BLASTX nr result
ID: Rehmannia26_contig00028254
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00028254
(614 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACG30078.1| PPR2 [Zea mays] 39 4e-07
ref|NP_001169349.1| pentatricopeptide repeat 2 [Zea mays] gi|309... 39 5e-07
ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays] gi|195... 39 8e-07
ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [S... 38 1e-06
>gb|ACG30078.1| PPR2 [Zea mays]
Length = 580
Score = 39.3 bits (90), Expect(3) = 4e-07
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Frame = -1
Query: 500 AI*LINDLSTAEWMKCLVICQA*CILFTISTLIKASVDLCYFELVESHYNQVADDSM--- 330
A+ L+ND MK +CQ ++T ST+IKA VD F+L ++ Y +A+ S+
Sbjct: 280 ALQLLND------MKSSPLCQP--DVYTYSTIIKACVDAARFDLTDAMYKDMAERSISPN 331
Query: 329 -----------GSRGNMRDGE----DLIRILDCARKYDI*TMNSILS 234
G G + D E D++ + C K D+ TMN ILS
Sbjct: 332 TVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSC--KPDVWTMNIILS 376
Score = 30.0 bits (66), Expect(3) = 4e-07
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 609 GWTGQPDEACQLFVEMVRRKIVSNIRTLDSLV-AFCRSNLTDK 484
G +GQP A QLF EM+++ +L+ A+CRS L D+
Sbjct: 237 GRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDE 279
Score = 30.0 bits (66), Expect(3) = 4e-07
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 17/51 (33%)
Frame = -3
Query: 222 RGEIELMED-----------------GISICAFGEKRIYNKMTFAMEFMIK 121
RGE+ELME I I A+G++R+Y+KM+ ME M K
Sbjct: 381 RGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRK 431
>ref|NP_001169349.1| pentatricopeptide repeat 2 [Zea mays] gi|30961817|gb|AAP37977.1|
PPR2 [Zea mays] gi|224028857|gb|ACN33504.1| unknown [Zea
mays] gi|414883415|tpg|DAA59429.1| TPA:
pentatricopeptide repeat 2 [Zea mays]
Length = 571
Score = 38.9 bits (89), Expect(3) = 5e-07
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Frame = -1
Query: 500 AI*LINDLSTAEWMKCLVICQA*CILFTISTLIKASVDLCYFELVESHYNQVADDSM--- 330
A+ L+ND MK +CQ ++T ST+IKA +D F+L ++ Y +A+ S+
Sbjct: 271 ALQLLND------MKSSPLCQP--DVYTYSTIIKACIDAARFDLTDAMYKDMAERSISPN 322
Query: 329 -----------GSRGNMRDGE----DLIRILDCARKYDI*TMNSILS 234
G G + D E D++ + C K D+ TMN ILS
Sbjct: 323 TVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSC--KPDVWTMNIILS 367
Score = 30.0 bits (66), Expect(3) = 5e-07
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 609 GWTGQPDEACQLFVEMVRRKIVSNIRTLDSLV-AFCRSNLTDK 484
G +GQP A QLF EM+++ +L+ A+CRS L D+
Sbjct: 228 GRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDE 270
Score = 30.0 bits (66), Expect(3) = 5e-07
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 17/51 (33%)
Frame = -3
Query: 222 RGEIELMED-----------------GISICAFGEKRIYNKMTFAMEFMIK 121
RGE+ELME I I A+G++R+Y+KM+ ME M K
Sbjct: 372 RGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRK 422
>ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays] gi|195613946|gb|ACG28803.1|
PPR2 [Zea mays]
Length = 562
Score = 39.3 bits (90), Expect(3) = 8e-07
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Frame = -1
Query: 500 AI*LINDLSTAEWMKCLVICQA*CILFTISTLIKASVDLCYFELVESHYNQVADDSM--- 330
A+ L+ND MK +CQ ++T ST+IKA VD F+L ++ Y +A+ S+
Sbjct: 262 ALQLLND------MKSSPLCQP--DVYTYSTIIKACVDAARFDLTDTMYKDMAERSISPN 313
Query: 329 -----------GSRGNMRDGE----DLIRILDCARKYDI*TMNSILS 234
G G + D E D++ + C K D+ TMN ILS
Sbjct: 314 TVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSC--KPDVWTMNIILS 358
Score = 30.0 bits (66), Expect(3) = 8e-07
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 17/51 (33%)
Frame = -3
Query: 222 RGEIELMED-----------------GISICAFGEKRIYNKMTFAMEFMIK 121
RGE+ELME I I A+G++R+Y+KM+ ME M K
Sbjct: 363 RGEVELMERWYEKFRGYGVEPETRTLNILIGAYGKRRMYDKMSAVMEHMRK 413
Score = 28.9 bits (63), Expect(3) = 8e-07
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 609 GWTGQPDEACQLFVEMVRRKIVSNIRTLDSLV-AFCRSNLTDK 484
G +GQP A QLF EM+++ +L+ A+CRS L D+
Sbjct: 219 GRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSCLLDE 261
>ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
gi|241924727|gb|EER97871.1| hypothetical protein
SORBIDRAFT_02g001400 [Sorghum bicolor]
Length = 560
Score = 38.1 bits (87), Expect(3) = 1e-06
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Frame = -1
Query: 500 AI*LINDLSTAEWMKCLVICQA*CILFTISTLIKASVDLCYFELVESHYNQVADDSM--- 330
A+ L+ND MK +CQ ++T ST+IKA VD F+L++ Y +A+ S+
Sbjct: 260 ALQLLND------MKGSPLCQP--DVYTYSTIIKACVDATRFDLIDVMYKDMAERSIAPN 311
Query: 329 -----------GSRGNMRDGEDLIR-ILD-CARKYDI*TMNSILS 234
G G + D E ++ +LD A K D+ TMN ILS
Sbjct: 312 TVTQNIVLSGYGKAGRLDDMEKVLSDMLDSTACKPDVWTMNIILS 356
Score = 30.8 bits (68), Expect(3) = 1e-06
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 17/51 (33%)
Frame = -3
Query: 222 RGEIELMED-----------------GISICAFGEKRIYNKMTFAMEFMIK 121
+G++ELME I I A+G+KR+Y+KM+ ME+M K
Sbjct: 361 KGQVELMEKWYEKFRSYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMRK 411
Score = 28.5 bits (62), Expect(3) = 1e-06
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -3
Query: 609 GWTGQPDEACQLFVEMVRRKIVSNIRTLDSLV-AFCRSNLTD 487
G +GQP A QLF EM+++ +L+ A+CRS L D
Sbjct: 217 GRSGQPARAHQLFDEMLQQGCQPTPGLYTALIGAYCRSGLLD 258