BLASTX nr result
ID: Rehmannia26_contig00026591
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00026591
(317 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ... 75 9e-12
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 74 3e-11
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 74 3e-11
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 69 5e-10
gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japo... 69 6e-10
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 69 6e-10
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 69 8e-10
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 69 8e-10
gb|EEC81662.1| hypothetical protein OsI_25211 [Oryza sativa Indi... 69 8e-10
gb|AAP53315.2| retrotransposon protein, putative, unclassified [... 69 8e-10
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 67 2e-09
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 67 3e-09
gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 10003... 66 5e-09
ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding sub... 66 5e-09
gb|EPS58897.1| hypothetical protein M569_15915, partial [Genlise... 65 9e-09
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 65 1e-08
gb|EEE57938.1| hypothetical protein OsJ_08648 [Oryza sativa Japo... 65 1e-08
gb|EEC74135.1| hypothetical protein OsI_09205 [Oryza sativa Indi... 65 1e-08
gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japo... 64 2e-08
ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g... 64 2e-08
>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
gi|3184275|gb|AAC18922.1| putative reverse transcriptase
[Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
H domain-containing protein [Arabidopsis thaliana]
Length = 365
Score = 75.1 bits (183), Expect = 9e-12
Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KL + KIKHFLWRC L T+ +LR R ++ D ICQ C E ETI H+ F+C + V
Sbjct: 39 KLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSV 98
Query: 136 WKLANV----SWDIPDEGIEFREWWSNICTLEKTDL--GKDRIALSTYILW 2
W+ AN+ W P F + + + L KT DR L +I+W
Sbjct: 99 WRSANIIIGNQWGPPS---SFEDNLNRLIQLSKTQTTNSLDRF-LPFWIMW 145
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 73.6 bits (179), Expect = 3e-11
Identities = 34/60 (56%), Positives = 42/60 (70%)
Frame = -2
Query: 298 KIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANV 119
KIK FLWR S LP + Q+ RRGM +D CQ+CGEE E+I HV F C+ A+QVW L+ V
Sbjct: 1056 KIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGV 1115
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 73.6 bits (179), Expect = 3e-11
Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Frame = -2
Query: 298 KIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANV 119
KIK FLWR + LP + Q+ RRGM++D CQ+CG+E E+ HV F C+ A+QVW L+ V
Sbjct: 830 KIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWALSGV 889
Query: 118 SWDIPDEGIEFREWWSNI---CTLEKTDLGKDRIALS-TYILW 2
P+ G + ++NI L+K L D + S ++LW
Sbjct: 890 --PTPEFGFQNASIFANIQFLFELKKMILVPDLVKRSWPWVLW 930
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 69.3 bits (168), Expect = 5e-10
Identities = 32/67 (47%), Positives = 40/67 (59%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
+L I KIKHF+WRC L T+ QLR R + D CQ C ETI H+ F C+ A+ V
Sbjct: 1390 RLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVV 1449
Query: 136 WKLANVS 116
W+ AN S
Sbjct: 1450 WRSANFS 1456
>gb|EEE54600.1| hypothetical protein OsJ_01823 [Oryza sativa Japonica Group]
Length = 639
Score = 68.9 bits (167), Expect = 6e-10
Identities = 31/66 (46%), Positives = 39/66 (59%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KLG+ KIKHFLWR + L L+ RGM+VD C MCG E H+FF C K+V
Sbjct: 247 KLGVPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKV 306
Query: 136 WKLANV 119
W+ N+
Sbjct: 307 WQALNL 312
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 68.9 bits (167), Expect = 6e-10
Identities = 31/66 (46%), Positives = 39/66 (59%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KLG+ KIKHFLWR + L L+ RGM+VD C MCG E H+FF C K+V
Sbjct: 1280 KLGVPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKV 1339
Query: 136 WKLANV 119
W+ N+
Sbjct: 1340 WQALNL 1345
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 68.6 bits (166), Expect = 8e-10
Identities = 31/66 (46%), Positives = 38/66 (57%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KLG+ KIKHFLWR + L L RGM+VD C MCG E H+FF C K+V
Sbjct: 1307 KLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKV 1366
Query: 136 WKLANV 119
W+ N+
Sbjct: 1367 WQALNL 1372
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 68.6 bits (166), Expect = 8e-10
Identities = 31/66 (46%), Positives = 38/66 (57%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KLG+ KIKHFLWR + L L RGM+VD C MCG E H+FF C K+V
Sbjct: 1252 KLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKV 1311
Query: 136 WKLANV 119
W+ N+
Sbjct: 1312 WQALNL 1317
>gb|EEC81662.1| hypothetical protein OsI_25211 [Oryza sativa Indica Group]
Length = 561
Score = 68.6 bits (166), Expect = 8e-10
Identities = 31/66 (46%), Positives = 38/66 (57%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KLG+ KIKHFLWR + L L RGM+VD C MCG E H+FF C K+V
Sbjct: 247 KLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKV 306
Query: 136 WKLANV 119
W+ N+
Sbjct: 307 WQALNL 312
>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 68.6 bits (166), Expect = 8e-10
Identities = 31/66 (46%), Positives = 38/66 (57%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KLG+ KIKHFLWR + L L RGM+VD C MCG E H+FF C K+V
Sbjct: 1248 KLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKV 1307
Query: 136 WKLANV 119
W+ N+
Sbjct: 1308 WQALNL 1313
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 67.4 bits (163), Expect = 2e-09
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Frame = -2
Query: 298 KIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANV 119
KIKHF WR + LPT+ L+RR + D+ CQ CGE E + H+ F C +K++W+ A++
Sbjct: 509 KIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHI 568
Query: 118 SWDIPDEGIEFREWWSNICTLEK-TDLGKDRIALSTYILW 2
P + + + N+ +++K + ++L +I W
Sbjct: 569 KL-CPGDSLMSNSFNQNLESIQKLNQSARKDVSLFPFIGW 607
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana]
Length = 1662
Score = 66.6 bits (161), Expect = 3e-09
Identities = 32/68 (47%), Positives = 38/68 (55%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KL I KIK+ LWR LPT +L RGM++D C C E ETI HV F C A +
Sbjct: 1364 KLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASI 1423
Query: 136 WKLANVSW 113
W L+N W
Sbjct: 1424 WGLSNFPW 1431
>gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 100033-105622 [Arabidopsis thaliana]
Length = 1557
Score = 65.9 bits (159), Expect = 5e-09
Identities = 30/53 (56%), Positives = 38/53 (71%)
Frame = -2
Query: 298 KIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQ 140
KIK FLWR + LP + Q+ RRGMNVD CQ+CG+E E+I HV F C+ A+Q
Sbjct: 1328 KIKLFLWRILSAALPVADQILRRGMNVDPCCQICGQEGESINHVLFTCSVARQ 1380
>ref|XP_003612608.1| Replication protein A 70 kDa DNA-binding subunit [Medicago
truncatula] gi|355513943|gb|AES95566.1| Replication
protein A 70 kDa DNA-binding subunit [Medicago
truncatula]
Length = 1723
Score = 65.9 bits (159), Expect = 5e-09
Identities = 26/61 (42%), Positives = 42/61 (68%)
Frame = -2
Query: 313 LGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVW 134
L + K+K FLWR ++ LPT ++L+ RG+N + C +C E E MH+FF+CT+++Q W
Sbjct: 1423 LKVPPKVKTFLWRSCRNALPTRVRLQDRGVNCTKTCALCENEDEDSMHLFFYCTKSRQCW 1482
Query: 133 K 131
+
Sbjct: 1483 Q 1483
>gb|EPS58897.1| hypothetical protein M569_15915, partial [Genlisea aurea]
Length = 363
Score = 65.1 bits (157), Expect = 9e-09
Identities = 29/73 (39%), Positives = 43/73 (58%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
K+ + +I F WR ++ILP L RR + +D C++CGE RET H F C ++ V
Sbjct: 78 KVKLPVRILTFGWRFGKNILPLKDNLTRRKICLDSTCEICGEGRETWFHAFISCPFSQAV 137
Query: 136 WKLANVSWDIPDE 98
W+L SW+I D+
Sbjct: 138 WRLGGTSWNITDQ 150
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 64.7 bits (156), Expect = 1e-08
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
Frame = -2
Query: 298 KIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQVWKLANV 119
KI+ FLW+ +P +LR RG+ D+ C MC E ETI H+ F C A+QVW + ++
Sbjct: 1053 KIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHL 1112
Query: 118 SWDIPDEGIEF-REWWSNICTL----EKTDLGKDRIALSTYILW 2
S G EF ++N+ L ++ DL +S +ILW
Sbjct: 1113 S----SAGSEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILW 1152
>gb|EEE57938.1| hypothetical protein OsJ_08648 [Oryza sativa Japonica Group]
Length = 521
Score = 64.7 bits (156), Expect = 1e-08
Identities = 30/65 (46%), Positives = 36/65 (55%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KLG+ KIKHFLWR + L L RGM+VD C MCG+ E H+ F C K+
Sbjct: 159 KLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGQYNEDAGHLLFKCKPVKKW 218
Query: 136 WKLAN 122
WK N
Sbjct: 219 WKERN 223
>gb|EEC74135.1| hypothetical protein OsI_09205 [Oryza sativa Indica Group]
Length = 521
Score = 64.7 bits (156), Expect = 1e-08
Identities = 30/65 (46%), Positives = 36/65 (55%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
KLG+ KIKHFLWR + L L RGM+VD C MCG+ E H+ F C K+
Sbjct: 159 KLGVPGKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGQYNEDAGHLLFKCKPVKKW 218
Query: 136 WKLAN 122
WK N
Sbjct: 219 WKERN 223
>gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japonica Group]
Length = 560
Score = 63.9 bits (154), Expect = 2e-08
Identities = 25/66 (37%), Positives = 42/66 (63%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
K+ + K+KHF+WR + +IL + L++RGM++D C +C E H+FF C + K+V
Sbjct: 289 KMQLPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRCIICNRMNEDAGHLFFKCKKVKKV 348
Query: 136 WKLANV 119
W+ N+
Sbjct: 349 WQENNL 354
>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
Japonica Group]
Length = 1453
Score = 63.9 bits (154), Expect = 2e-08
Identities = 25/66 (37%), Positives = 42/66 (63%)
Frame = -2
Query: 316 KLGIKNKIKHFLWRCNQSILPTSIQLRRRGMNVDEICQMCGEERETIMHVFFHCTRAKQV 137
K+ + K+KHF+WR + +IL + L++RGM++D C +C E H+FF C + K+V
Sbjct: 1182 KMQLPGKVKHFIWRFSHNILALRVNLQQRGMDLDSRCIICNRMNEDAGHLFFKCKKVKKV 1241
Query: 136 WKLANV 119
W+ N+
Sbjct: 1242 WQENNL 1247