BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00026193
         (838 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polyme...   209   1e-51
ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polyme...   200   5e-49
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              198   2e-48
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   198   2e-48
emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]   184   3e-44
ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Popu...   183   6e-44
ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Popu...   183   6e-44
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   179   1e-42
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   176   7e-42
gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus no...   173   8e-41
gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus pe...   173   8e-41
gb|EOY15730.1| RNA-dependent RNA polymerase family protein, puta...   168   2e-39
ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabid...   166   1e-38
dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]           166   1e-38
ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabid...   165   2e-38
gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]            165   2e-38
ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Popu...   161   2e-37
ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polyme...   160   7e-37
ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polyme...   159   9e-37
ref|XP_002883965.1| RNA-dependent RNA polymerase family protein ...   159   9e-37

>ref|XP_006353487.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            tuberosum]
          Length = 1110

 Score =  209 bits (532), Expect = 1e-51
 Identities = 109/197 (55%), Positives = 142/197 (72%), Gaps = 2/197 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            YDA+DAPK+GNKV +P  L+VD FPH +++    SY S SVLG+IYD V+ FK+E     
Sbjct: 908  YDAIDAPKSGNKVYIPKRLKVDKFPHFLQK--KESYHSTSVLGEIYDRVEKFKAEEPAAV 965

Query: 183  EIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEA 362
            EI K+S F+V IP+  + +W+ RY NYR EM +ALN+  ESKND A++VIKKYKQLLYEA
Sbjct: 966  EIKKLSAFEVGIPDTCLRLWEERYRNYRFEMKEALNTSSESKNDLADQVIKKYKQLLYEA 1025

Query: 363  PDMEESPKDSEVIYDEAISIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGP- 536
            PDMEES + +  +Y++A++IY VTYDYA   G V KCGFAW+VAG+ALC L A   A   
Sbjct: 1026 PDMEESIRSTTDMYNDALAIYCVTYDYAKAIGDVRKCGFAWKVAGAALCKLHAELHAKEH 1085

Query: 537  KEKPIVILPSVLRDLLN 587
             +K + + PS+L  LLN
Sbjct: 1086 NQKVMAMSPSILHKLLN 1102


>ref|XP_004241116.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Solanum
            lycopersicum]
          Length = 1011

 Score =  200 bits (509), Expect = 5e-49
 Identities = 99/195 (50%), Positives = 140/195 (71%), Gaps = 1/195 (0%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            YDALDAPK+G KV +P+ L+ + FPH+ME+G   SY S S+LGQIYD V ++  E +   
Sbjct: 820  YDALDAPKSGKKVSIPHYLKANKFPHYMEKGNSCSYHSTSILGQIYDHVDSYPDEDLCIT 879

Query: 183  EIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEA 362
            EI K+ CF+V IP+  + +W+ RY+ Y+K+M +A+N   E +  + NEVIKKYK LLY A
Sbjct: 880  EISKLPCFEVEIPQRCMTLWRGRYEEYKKDMTRAMNFDCELRITSCNEVIKKYKMLLYGA 939

Query: 363  PDMEESPKDSEVIYDEAISIYHVTYDYA-MGHGVEKCGFAWRVAGSALCSLCAWKLAGPK 539
             + E++ + +E I+DEA++IYHVTYD A + + +EKCGFAW+VAGSALC + A      K
Sbjct: 940  VEFEQTVRKTEDIFDEALAIYHVTYDNARITYSIEKCGFAWKVAGSALCRIHAMY---RK 996

Query: 540  EKPIVILPSVLRDLL 584
            EK + ILPSVL+++L
Sbjct: 997  EKDLPILPSVLQEIL 1011


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  198 bits (504), Expect = 2e-48
 Identities = 104/197 (52%), Positives = 135/197 (68%), Gaps = 2/197 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            YDALDAPK+G KV V  EL+ + FPH M  G +SSY S S+LGQIYD V++F+ E    K
Sbjct: 738  YDALDAPKSGMKVNVSKELKAEKFPHFM--GRESSYHSTSILGQIYDAVESFQPENQSTK 795

Query: 183  EIWKMSCFDVP-IPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYE 359
            EIW++  F++  +P+  +  WK RYD YR EMA AL  G E+K++ A EVI KYKQ+LY 
Sbjct: 796  EIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYG 855

Query: 360  APDMEESPKDSEVIYDEAISIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWKLAGP 536
            A + EESP++ E I+DEA++IYHVTY++ + G  V  C F WRVAG ALC L   KL   
Sbjct: 856  AAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKLG-- 913

Query: 537  KEKPIVILPSVLRDLLN 587
             EK +V +PSVLR + N
Sbjct: 914  -EKSMVCVPSVLRQVFN 929


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  198 bits (504), Expect = 2e-48
 Identities = 104/197 (52%), Positives = 135/197 (68%), Gaps = 2/197 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            YDALDAPK+G KV V  EL+ + FPH M  G +SSY S S+LGQIYD V++F+ E    K
Sbjct: 752  YDALDAPKSGMKVNVSKELKAEKFPHFM--GRESSYHSTSILGQIYDAVESFQPENQSTK 809

Query: 183  EIWKMSCFDVP-IPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYE 359
            EIW++  F++  +P+  +  WK RYD YR EMA AL  G E+K++ A EVI KYKQ+LY 
Sbjct: 810  EIWRLPLFNIDAVPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYG 869

Query: 360  APDMEESPKDSEVIYDEAISIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWKLAGP 536
            A + EESP++ E I+DEA++IYHVTY++ + G  V  C F WRVAG ALC L   KL   
Sbjct: 870  AAEFEESPRNLEDIFDEALAIYHVTYEFVINGARVSYCNFPWRVAGRALCKLYTVKLG-- 927

Query: 537  KEKPIVILPSVLRDLLN 587
             EK +V +PSVLR + N
Sbjct: 928  -EKSMVCVPSVLRQVFN 943


>emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
          Length = 1202

 Score =  184 bits (468), Expect = 3e-44
 Identities = 101/196 (51%), Positives = 128/196 (65%), Gaps = 1/196 (0%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            YDALDAPK+G KV V  EL+ + FPH M  G +SSY S S+LGQIYD V++F+ E    K
Sbjct: 1021 YDALDAPKSGMKVNVSKELKAEKFPHFM--GRESSYHSTSILGQIYDAVESFQPENQSTK 1078

Query: 183  EIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEA 362
            +          +P+  +  WK RYD YR EMA AL  G E+K++ A EVI KYKQ+LY A
Sbjct: 1079 DA---------VPQACLRSWKDRYDQYRSEMAAALQHGGETKDEYAAEVINKYKQILYGA 1129

Query: 363  PDMEESPKDSEVIYDEAISIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWKLAGPK 539
             + EESP+  E I+DEA++IYHVTY++A+ G  V  C F WRVAG ALC L   KL    
Sbjct: 1130 AEFEESPRKLEDIFDEALAIYHVTYEFAINGARVSYCNFPWRVAGRALCKLYTVKLG--- 1186

Query: 540  EKPIVILPSVLRDLLN 587
            EK +V +PSVLR + N
Sbjct: 1187 EKSMVCVPSVLRQVFN 1202


>ref|XP_006380470.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334280|gb|ERP58267.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 877

 Score =  183 bits (465), Expect = 6e-44
 Identities = 92/196 (46%), Positives = 130/196 (66%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNK-VPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQ 179
            YDALDAPK G + + VP  L+ + FPH M +    +YRS S+LG+IYD V+A++   +  
Sbjct: 685  YDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSS 744

Query: 180  KEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYE 359
             ++WK+ CFD  + E+Y+  WK  Y  YRKEM  AL +G+ES ND ANEVI+KYK+ LYE
Sbjct: 745  NDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYE 803

Query: 360  APDMEESPKDSEVIYDEAISIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGP 536
            A +   S +  E I++EA+++Y V+Y++A   G V  C FAWRVAG ALC+L   K  G 
Sbjct: 804  AAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG- 862

Query: 537  KEKPIVILPSVLRDLL 584
             E+P++  PS L+ +L
Sbjct: 863  -ERPMICSPSALKGIL 877


>ref|XP_006380469.1| hypothetical protein POPTR_0007s06560g [Populus trichocarpa]
            gi|550334279|gb|ERP58266.1| hypothetical protein
            POPTR_0007s06560g [Populus trichocarpa]
          Length = 899

 Score =  183 bits (465), Expect = 6e-44
 Identities = 92/196 (46%), Positives = 130/196 (66%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNK-VPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQ 179
            YDALDAPK G + + VP  L+ + FPH M +    +YRS S+LG+IYD V+A++   +  
Sbjct: 707  YDALDAPKKGGRRIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSS 766

Query: 180  KEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYE 359
             ++WK+ CFD  + E+Y+  WK  Y  YRKEM  AL +G+ES ND ANEVI+KYK+ LYE
Sbjct: 767  NDVWKLPCFDDEVHELYLVKWKELYGQYRKEMRNALKAGEES-NDKANEVIRKYKEFLYE 825

Query: 360  APDMEESPKDSEVIYDEAISIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGP 536
            A +   S +  E I++EA+++Y V+Y++A   G V  C FAWRVAG ALC+L   K  G 
Sbjct: 826  AAEFNLSKRRDEEIFEEAMALYQVSYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG- 884

Query: 537  KEKPIVILPSVLRDLL 584
             E+P++  PS L+ +L
Sbjct: 885  -ERPMICSPSALKGIL 899


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  179 bits (453), Expect = 1e-42
 Identities = 94/194 (48%), Positives = 125/194 (64%), Gaps = 1/194 (0%)
 Frame = +3

Query: 3    YDALDAPKTGNK-VPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQ 179
            YDALDAPK G K + VP  L+  T PH MERG  +SY S S+LGQI+D    ++ E VP 
Sbjct: 866  YDALDAPKKGGKKIEVPKHLKAGTLPHFMERG-KNSYVSTSILGQIFDTANMYQEE-VPN 923

Query: 180  KEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYE 359
             E+ K+ CF+  +PE     WK  Y+ YRK+M  A+    ++KN AA   IKKYK++LY 
Sbjct: 924  IEVQKLPCFEEELPEYIFMKWKFLYELYRKDMVDAMQLDPDAKNIAAEATIKKYKEILYG 983

Query: 360  APDMEESPKDSEVIYDEAISIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGPK 539
            A ++E SP+ +E +Y EA++IY VTYD+AM   V  CGFAW+VAGSAL  L A K     
Sbjct: 984  AEELEGSPRSNEEVYQEALAIYQVTYDHAMSRSVRNCGFAWKVAGSALFKLYAIK---HS 1040

Query: 540  EKPIVILPSVLRDL 581
            E+    LPSV+R++
Sbjct: 1041 ERSFHCLPSVMREI 1054


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  176 bits (447), Expect = 7e-42
 Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 2/195 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEA-VPQ 179
            YDALDAPK G+KV +PNELR D FPH+MER  +  ++S S+LG IYD V++  +E   P 
Sbjct: 792  YDALDAPKKGDKVYLPNELRPDIFPHYMER--EKKFKSTSILGLIYDFVKSQTTEEPTPS 849

Query: 180  KEIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLY 356
             EI K+ CF D P+ E ++E  +  YDNYR EM +A+ +    K+++ANEVI++YKQ  Y
Sbjct: 850  SEISKLPCFEDEPVSEFHMEKCRRWYDNYRSEMTQAMKT---DKDESANEVIQRYKQEFY 906

Query: 357  EAPDMEESPKDSEVIYDEAISIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGP 536
             A   E+S K  E +Y +A+++Y + YDYA+  GV KCGF W+VAG  LC     K    
Sbjct: 907  GAAGFEDSKKSLEELYPQALTLYKIVYDYAIHAGVSKCGFVWKVAGPVLCRFYLMKKM-- 964

Query: 537  KEKPIVILPSVLRDL 581
            +EK +V  PSVL++L
Sbjct: 965  QEKSLVCAPSVLKEL 979


>gb|EXB59780.1| putative RNA-dependent RNA polymerase 3 [Morus notabilis]
          Length = 521

 Score =  173 bits (438), Expect = 8e-41
 Identities = 99/214 (46%), Positives = 131/214 (61%), Gaps = 20/214 (9%)
 Frame = +3

Query: 3   YDALDAPKTGNK-------------------VPVPNELRVDTFPHHMERGLDSSYRSISV 125
           YDALDAPK G K                   V VP EL+ + FPH+ME+   +S+ S S+
Sbjct: 312 YDALDAPKQGGKQQDLAKFFEAYAALELSFQVEVPRELKPNRFPHYMEK--QNSFHSRSI 369

Query: 126 LGQIYDMVQAFKSEAVPQKEIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDES 305
           LG IYD V A++ E    KEI+K+  F+V +PE  +  WKA Y +YR +M  AL + D  
Sbjct: 370 LGWIYDEVDAYQLEDHSNKEIFKLPHFEVEVPEACLTKWKAHYKDYRDDMCDALLAKDVG 429

Query: 306 KNDAANEVIKKYKQLLYEAPDMEESPKDSEVIYDEAISIYHVTYDYAMG-HGVEKCGFAW 482
           K +AA EV +KYK+LLY A ++EES K  E IY+EA++IYHV YDYA+    V  C FAW
Sbjct: 430 KTEAAEEVKRKYKRLLYGAEELEESTKKMEEIYNEALAIYHVCYDYAISQRKVSYCSFAW 489

Query: 483 RVAGSALCSLCAWKLAGPKEKPIVILPSVLRDLL 584
            +AGSAL  L A+K  G  E+    LPSVL+++L
Sbjct: 490 NIAGSALLKLHAFKKIG--ERAFFCLPSVLKEVL 521


>gb|EMJ05474.1| hypothetical protein PRUPE_ppa001584mg [Prunus persica]
          Length = 798

 Score =  173 bits (438), Expect = 8e-41
 Identities = 95/197 (48%), Positives = 133/197 (67%), Gaps = 3/197 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            Y+ALDAPK G KV VP EL+ + FPH+MER   +SY+S S+LG IYD V A+++E    K
Sbjct: 607  YEALDAPKKGGKVVVPGELKSNLFPHYMERV--NSYKSTSILGLIYDTVNAYQAEDASIK 664

Query: 183  EIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGD-ESKNDAANEVIKKYKQLLY- 356
            E+ K+  FDV +PE  ++ W+  Y +YR EM+ A+   D +SKN+AA++V++KYK++LY 
Sbjct: 665  EVKKLPMFDVEVPEECLKKWREHYQHYRSEMSSAMQDDDRDSKNNAADKVLRKYKEILYG 724

Query: 357  EAPDMEESPKDSEVIYDEAISIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAG 533
             A D+E S +    I+DEA++IY VTYD+A+  G V KC FAW+VAGSALC     K   
Sbjct: 725  GAEDLENSTRPLHEIFDEALAIYRVTYDHAISQGAVGKCCFAWKVAGSALCKYYMNKQGA 784

Query: 534  PKEKPIVILPSVLRDLL 584
               + I    SVL+DL+
Sbjct: 785  ---RTIEASFSVLKDLV 798


>gb|EOY15730.1| RNA-dependent RNA polymerase family protein, putative isoform 1
           [Theobroma cacao]
          Length = 328

 Score =  168 bits (426), Expect = 2e-39
 Identities = 92/198 (46%), Positives = 130/198 (65%), Gaps = 5/198 (2%)
 Frame = +3

Query: 3   YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
           Y++LDAPKTG K+ VP ELR D FPH++ER    S++S S+LG+IYD V+++  E +P+K
Sbjct: 135 YESLDAPKTGKKIEVPRELRADAFPHYLER--QKSFKSASILGKIYDFVKSY-GEELPRK 191

Query: 183 EIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGD----ESKNDAANEVIKKYKQL 350
           E+ K+ CFDV  P+   E W   Y  YR++M + L + D    E ++ AAN V  KYKQ 
Sbjct: 192 EVRKLPCFDVGFPQDCREKWTELYKQYREDMTQTLQTLDGKSKELRDVAANAVYNKYKQE 251

Query: 351 LYEAPDMEESPKDSEVIYDEAISIYHVTYDYAMG-HGVEKCGFAWRVAGSALCSLCAWKL 527
           LY    +E+  +  + IY EA++IY+++YDYA+    V KCGFAW+VAGSAL SL A   
Sbjct: 252 LYGGAVLEQRQRPLDQIYKEALAIYNISYDYAIRIDDVGKCGFAWKVAGSALLSLYA--- 308

Query: 528 AGPKEKPIVILPSVLRDL 581
           +   EK +   PSVL++L
Sbjct: 309 SEQGEKTLSCAPSVLKEL 326


>ref|NP_179583.3| probable RNA-dependent RNA polymerase 5 [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| probable RNA-dependent RNA
            polymerase 5 [Arabidopsis thaliana]
          Length = 977

 Score =  166 bits (420), Expect = 1e-38
 Identities = 89/195 (45%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV-PQ 179
            YDALDAPK G+KV +PN+L+ D FPH+MER  D  ++S S+LG I+D V++  +E   P 
Sbjct: 788  YDALDAPKKGDKVYLPNKLKPDIFPHYMER--DKKFQSTSILGLIFDFVKSQTTEEPSPS 845

Query: 180  KEIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLY 356
             EI K+ CF D P+ E +++  +  YDNYR EM +A+ +    K+++ANEVI++YKQ  Y
Sbjct: 846  SEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMKT---DKDESANEVIQRYKQEFY 902

Query: 357  EAPDMEESPKDSEVIYDEAISIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGP 536
             A   E+S K  E +Y +A+++Y + YDYA+  GV KC F W+VAG  LC     K    
Sbjct: 903  GAAGFEDSKKSLEELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKKM-- 960

Query: 537  KEKPIVILPSVLRDL 581
            +EK +V  PSVL++L
Sbjct: 961  QEKCLVCAPSVLKEL 975


>dbj|BAF01243.1| hypothetical protein [Arabidopsis thaliana]
          Length = 339

 Score =  166 bits (420), Expect = 1e-38
 Identities = 89/195 (45%), Positives = 128/195 (65%), Gaps = 2/195 (1%)
 Frame = +3

Query: 3   YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAV-PQ 179
           YDALDAPK G+KV +PN+L+ D FPH+MER  D  ++S S+LG I+D V++  +E   P 
Sbjct: 150 YDALDAPKKGDKVYLPNKLKPDIFPHYMER--DKKFQSTSILGLIFDFVKSQTTEEPSPS 207

Query: 180 KEIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLY 356
            EI K+ CF D P+ E +++  +  YDNYR EM +A+ +    K+++ANEVI++YKQ  Y
Sbjct: 208 SEISKLPCFEDEPVSEFHMQKCRLWYDNYRTEMTQAMKT---DKDESANEVIQRYKQEFY 264

Query: 357 EAPDMEESPKDSEVIYDEAISIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGP 536
            A   E+S K  E +Y +A+++Y + YDYA+  GV KC F W+VAG  LC     K    
Sbjct: 265 GAAGFEDSKKSLEELYPQALALYKIVYDYAIHAGVSKCRFVWKVAGPVLCRFYLNKKM-- 322

Query: 537 KEKPIVILPSVLRDL 581
           +EK +V  PSVL++L
Sbjct: 323 QEKCLVCAPSVLKEL 337


>ref|NP_179581.2| probable RNA-dependent RNA polymerase 3 [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| probable RNA-dependent RNA
            polymerase 3 [Arabidopsis thaliana]
          Length = 992

 Score =  165 bits (418), Expect = 2e-38
 Identities = 88/196 (44%), Positives = 124/196 (63%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            YDALDAPK G KV +P +L +  FPH+MER     +RS S+LG I+D V +  +E  P  
Sbjct: 799  YDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPS 858

Query: 183  EIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESK-NDAANEVIKKYKQLLY 356
            EI K+  F D P+P+ +++ + + Y+NYR EM++A+   D+ K N   NEVI++YKQ  Y
Sbjct: 859  EISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFY 918

Query: 357  EAPDMEESPKDSEVIYDEAISIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGP 536
             A   E+S K  E +Y +A+++Y+V YDYA+  GV KC FAW VAG  LC    + L   
Sbjct: 919  GAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYLKKT 975

Query: 537  KEKPIVILPSVLRDLL 584
            K+K +V   SVL+ LL
Sbjct: 976  KDKSVVASTSVLKKLL 991


>gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
          Length = 966

 Score =  165 bits (418), Expect = 2e-38
 Identities = 88/196 (44%), Positives = 124/196 (63%), Gaps = 2/196 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            YDALDAPK G KV +P +L +  FPH+MER     +RS S+LG I+D V +  +E  P  
Sbjct: 773  YDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPS 832

Query: 183  EIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESK-NDAANEVIKKYKQLLY 356
            EI K+  F D P+P+ +++ + + Y+NYR EM++A+   D+ K N   NEVI++YKQ  Y
Sbjct: 833  EISKLWYFEDEPVPKSHMDKFTSWYENYRSEMSQAMMETDKVKRNQLTNEVIQRYKQDFY 892

Query: 357  EAPDMEESPKDSEVIYDEAISIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGP 536
             A   E+S K  E +Y +A+++Y+V YDYA+  GV KC FAW VAG  LC    + L   
Sbjct: 893  GAAGFEDSNKSLEELYPQALALYNVVYDYAIQEGVAKCTFAWNVAGPVLCK---FYLKKT 949

Query: 537  KEKPIVILPSVLRDLL 584
            K+K +V   SVL+ LL
Sbjct: 950  KDKSVVASTSVLKKLL 965


>ref|XP_002310028.1| hypothetical protein POPTRDRAFT_654879 [Populus trichocarpa]
          Length = 189

 Score =  161 bits (408), Expect = 2e-37
 Identities = 83/187 (44%), Positives = 118/187 (63%), Gaps = 1/187 (0%)
 Frame = +3

Query: 27  TGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQKEIWKMSCF 206
           T  ++ VP  L+ + FPH M +    +YRS S+LG+IYD V+A++   +   ++WK+ CF
Sbjct: 6   TLKQIEVPEGLKAELFPHFMGKNEKKTYRSTSILGKIYDKVKAYEDMDLSSNDVWKLPCF 65

Query: 207 DVPIPEIYVEMWKARYDNYRKEMAKALNSGDESKNDAANEVIKKYKQLLYEAPDMEESPK 386
           D  + E  +  WK  Y  YR EM  AL +G E KN+ ANEVIKKYK++LYEA +   S +
Sbjct: 66  DGEVHESCLVKWKGLYGQYRTEMRNALQAGKE-KNNEANEVIKKYKEILYEAAEFNLSRR 124

Query: 387 DSEVIYDEAISIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAGPKEKPIVILP 563
             E I++EA ++Y VTY++A   G V  C FAWRVAG ALC+L   K  G  E+P++  P
Sbjct: 125 RDEEIFEEARALYQVTYNHAKSQGVVGNCSFAWRVAGLALCTLYVLKNQG--ERPMICSP 182

Query: 564 SVLRDLL 584
           S L+ +L
Sbjct: 183 SALKGIL 189


>ref|XP_006572940.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 988

 Score =  160 bits (404), Expect = 7e-37
 Identities = 90/196 (45%), Positives = 129/196 (65%), Gaps = 3/196 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            Y+ALDAPK+G KV VPN+L  + FPH+ME+  D S+ S S+LG IYD V+ +    +   
Sbjct: 796  YEALDAPKSGRKVQVPNDLIAELFPHYMEK--DKSFTSTSILGLIYDEVEIWLENDMVG- 852

Query: 183  EIWKMSCFDVPIPEIYVEMWKARYDNYRKEMAKALNSGDESK-NDAANEVIKKYKQLLY- 356
            EIWK+ CFDV +P   +E WK +Y+ YRK+M  ALN  D+SK ++ A EV +KYK+  Y 
Sbjct: 853  EIWKLPCFDVEVPPSCLEKWKTKYEEYRKDMTDALNLKDKSKSHEEAAEVNRKYKEEFYG 912

Query: 357  EAPDMEESPKDSEVIYDEAISIYHVTYDYAM-GHGVEKCGFAWRVAGSALCSLCAWKLAG 533
               +ME   K    I++EA+++Y+V+Y+YAM    V++CGFAW++AGSAL  L   K   
Sbjct: 913  PTLEMEGCLKSIGDIFNEALAVYNVSYEYAMLKKEVKRCGFAWKIAGSALTRLYIIK--- 969

Query: 534  PKEKPIVILPSVLRDL 581
              EK +   PSV+R++
Sbjct: 970  QNEKALNCDPSVVREI 985


>ref|XP_004288887.1| PREDICTED: probable RNA-dependent RNA polymerase 3-like [Fragaria
            vesca subsp. vesca]
          Length = 1405

 Score =  159 bits (403), Expect = 9e-37
 Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 3/197 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            Y ALDA K G KV VP EL+V  FPH+M  G + SY S S+LG IY+ V   ++E    K
Sbjct: 1214 YTALDAAKKGVKVDVPKELKVSCFPHYM--GKNRSYPSTSILGSIYNRVDEHQTEDRSLK 1271

Query: 183  EIWKMSCFDV-PIPEIYVEMWKARYDNYRKEMAKALNSGD-ESKNDAANEVIKKYKQLLY 356
            E+ K+  FD   +P+  ++ W   +  YRKEMA AL+  D +SKN +A+ VI+KY+++LY
Sbjct: 1272 EVEKLPAFDENEVPDACLDKWAELHRQYRKEMASALDDDDKQSKNQSADVVIRKYRKILY 1331

Query: 357  EAPDMEESPKDSEVIYDEAISIYHVTYDYAMGHG-VEKCGFAWRVAGSALCSLCAWKLAG 533
            EA D EES +  E IY+EA +IYHV YD+A   G V+ C FAWRVAG ALC L A     
Sbjct: 1332 EANDFEESRRPIEEIYNEAHAIYHVCYDHAKRVGNVKVCSFAWRVAGKALCQLHA---RN 1388

Query: 534  PKEKPIVILPSVLRDLL 584
              E+   I+ SVL ++L
Sbjct: 1389 NNERFCTIVSSVLMEIL 1405


>ref|XP_002883965.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329805|gb|EFH60224.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 934

 Score =  159 bits (403), Expect = 9e-37
 Identities = 83/195 (42%), Positives = 122/195 (62%), Gaps = 2/195 (1%)
 Frame = +3

Query: 3    YDALDAPKTGNKVPVPNELRVDTFPHHMERGLDSSYRSISVLGQIYDMVQAFKSEAVPQK 182
            YDALDAPK G KV +P +L +  FPH+MER     +RS S+LG I+D V +  +E  P  
Sbjct: 741  YDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNAEEPPPS 800

Query: 183  EIWKMSCF-DVPIPEIYVEMWKARYDNYRKEMAKALNSGDE-SKNDAANEVIKKYKQLLY 356
            EI K+  F D P+P+ +++ + + Y+NYR EM++A+   D+  K   ANEVI++YKQ  Y
Sbjct: 801  EISKLWYFEDEPVPKSHMDKFTSWYENYRAEMSQAMEETDKVKKKQLANEVIQRYKQDFY 860

Query: 357  EAPDMEESPKDSEVIYDEAISIYHVTYDYAMGHGVEKCGFAWRVAGSALCSLCAWKLAGP 536
             A   E+S K  E +Y +A+++Y++ YD+A   GV KC F W+VAG     LC + L   
Sbjct: 861  GAARFEDSNKSLEELYPQALALYNIVYDFAFPEGVSKCAFVWKVAGPV---LCRFYLKKT 917

Query: 537  KEKPIVILPSVLRDL 581
            +EK +V   SVL+ +
Sbjct: 918  QEKLVVASTSVLKKI 932