BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00025964
         (797 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]    73   6e-20
emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]    67   4e-19
emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]    72   3e-18
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...    77   2e-16
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...    77   2e-16
ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488...    66   1e-15
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]    87   7e-15
emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera]    65   2e-14
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...    70   3e-14
gb|ACN32036.1| unknown [Zea mays]                                      83   1e-13
gb|ACL54615.1| unknown [Zea mays]                                      83   1e-13
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    82   3e-13
emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera]    51   4e-13
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]    80   8e-13
emb|CAN66999.1| hypothetical protein VITISV_019171 [Vitis vinifera]    78   3e-12
emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]    51   4e-12
emb|CAN78864.1| hypothetical protein VITISV_007439 [Vitis vinifera]    48   2e-11
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...    75   3e-11
emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera]    75   3e-11
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    74   5e-11

>emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]
          Length = 920

 Score = 72.8 bits (177), Expect(2) = 6e-20
 Identities = 63/190 (33%), Positives = 84/190 (44%), Gaps = 13/190 (6%)
 Frame = +2

Query: 2   SFENRLESYDNHGNTENSQFYVNLTTQSQVNTYRRGG---FNQAGRGRGSSQNTR----- 157
           +FE+RLE       +   Q   N  + S      RGG   FN  G G+G + N       
Sbjct: 66  AFEHRLEQ-----QSSIEQMSANYASSSN----NRGGGRKFN-GGCGQGYAPNNNNYTYX 115

Query: 158 ----GGRS-QGRTANYXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXX 322
               GGR+ QGR  N              CQ+C    HTA  C++R D++F         
Sbjct: 116 SHGXGGRNGQGRRQN------SSPSEKPQCQLCGKFGHTAQICYHRFDISF----QGGXT 165

Query: 323 XXXXTQQTGHNTNPSVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEY 502
               +   G+  N    VAS  NS        +D SWY DSGA++H+T +LGNL   S Y
Sbjct: 166 TTSPSLNNGNQNNILAMVASFSNSS-------ADESWYLDSGASHHLTQNLGNLTSTSPY 218

Query: 503 QGGDKVQLGN 532
            G D+V +GN
Sbjct: 219 TGTDRVTIGN 228



 Score = 51.6 bits (122), Expect(2) = 6e-20
 Identities = 32/85 (37%), Positives = 47/85 (55%)
 Frame = +3

Query: 537 QDQATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAFSAAVNKKHS 716
           +D+ T  VL +G L++GLY F +   +N +P       SSV  +    S FS+ +  K  
Sbjct: 253 KDRHTKMVLAQGKLENGLYKFPVF--SNKKPY------SSVNNASAFHSHFSSTIENKAE 304

Query: 717 LVVWHNRLGHPSMDIVKRALQGCNI 791
           L  WHNRLGH + DIV + +  CN+
Sbjct: 305 L--WHNRLGHVASDIVSKVMNTCNV 327


>emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]
          Length = 1087

 Score = 67.4 bits (163), Expect(2) = 4e-19
 Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 4/176 (2%)
 Frame = +2

Query: 17  LESYDNHGNTENSQFYVNLTTQSQVNTYRRGGFNQAGRGRGSSQN----TRGGRSQGRTA 184
           L ++++H   ++S   ++    S  N    G     GRG+G + N    T  G  +G   
Sbjct: 64  LLAFEHHLEQQSSIEQMSANYASSSNNRGGGRKFNGGRGQGYAPNNNNYTYRGHGRGGRN 123

Query: 185 NYXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHNTNP 364
                          CQ+C    HTA  C++  D++F             +   G+  N 
Sbjct: 124 GQGGRQNSNPSEKPQCQLCGKFGHTAQICYHXFDISF----QGGQTITSPSLNNGNQNNI 179

Query: 365 SVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLGN 532
              VAS  NS        +D SWY D GA++H+T +LGN    S Y G D+V +GN
Sbjct: 180 XAMVASSSNSP-------ADESWYLDFGASHHLTQNLGNXTSTSPYTGTDRVTIGN 228



 Score = 54.3 bits (129), Expect(2) = 4e-19
 Identities = 34/94 (36%), Positives = 50/94 (53%)
 Frame = +3

Query: 510 ETRCNLGMVQDQATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAF 689
           E   N+  V+D+ T  VL +G L++GLY F +   +N +P       SS+  +    S F
Sbjct: 235 EFHSNVFFVKDRHTKMVLAQGKLENGLYKFPMF--SNKKPY------SSINNASAFHSHF 286

Query: 690 SAAVNKKHSLVVWHNRLGHPSMDIVKRALQGCNI 791
            + V  K  L  WHNRLGH + DIV + +  CN+
Sbjct: 287 XSTVENKAEL--WHNRLGHAASDIVSKVMNTCNV 318


>emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]
          Length = 1079

 Score = 72.4 bits (176), Expect(2) = 3e-18
 Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
 Frame = +2

Query: 98  YRRGGFNQAGRGRGSSQNTRGGRSQG--RTANYXXXXXXXXXXXXXCQICHYNNHTADKC 271
           + RG F+   RGR   Q  RGG + G  R+ N              CQ+C    H+AD+C
Sbjct: 239 FGRGNFSP--RGRDGFQG-RGGFNNGGWRSWNTWNNNATANAEKPVCQVCMKIGHSADRC 295

Query: 272 FYRLDMNF----VPXXXXXXXXXXXTQ-QTGHNTNPSVHVASIGNSGNDIHQDMSDMSWY 436
           +YR D +F     P           TQ Q G+  N  V +A+  N        + D +WY
Sbjct: 296 YYRYDPSFQGPHTPGFTPSFQKSPQTQIQGGNKPNMQVLMATPEN--------ICDTNWY 347

Query: 437 PDSGATNHVTYDLGNLNIASEYQGGDKVQLGN 532
           PDSGA+NHVT +  NL   + Y G ++V++GN
Sbjct: 348 PDSGASNHVTTNANNLVEHTPYYGNEQVRVGN 379



 Score = 46.2 bits (108), Expect(2) = 3e-18
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
 Frame = +3

Query: 540 DQATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAFSA-------- 695
           DQ +  V+L G LK GLY+F+     +SQ +   + PS V  S+   S  S         
Sbjct: 380 DQVSKIVVLEGKLKGGLYAFD-----SSQIQLKKSAPSQVSLSQSVTSHQSGLRANCQVS 434

Query: 696 -------AVNKKHSLVVWHNRLGHPSMDIVKRALQGCNI 791
                  + N   ++ +WH+RLGHPS  IV+  +  C +
Sbjct: 435 IHVSDLQSQNGSSTVGIWHDRLGHPSFKIVQTVMSLCKL 473


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 1313

 Score = 77.0 bits (188), Expect(2) = 2e-16
 Identities = 57/186 (30%), Positives = 82/186 (44%), Gaps = 4/186 (2%)
 Frame = +2

Query: 2   SFENRLESYDNHGNTENSQFYVNLTTQSQVNTYRRGGFNQAGRG-RGSSQNTRGGRSQGR 178
           +FE +L+     G  E  Q   N+  +      R G   +  RG RGSS+  R   S GR
Sbjct: 176 NFETKLDLM--RGGGEQHQGSANMAGRGGRGNQRGGSGGRGQRGGRGSSRGGRASWSGGR 233

Query: 179 TAN---YXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTG 349
            +N   Y             CQ+C    HTA +C++R + +FVP            +  G
Sbjct: 234 QSNQGGYIRRSNNSSDERPVCQVCFKKGHTAARCWHRFEEDFVPDE----------KLAG 283

Query: 350 HNTNPSVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLG 529
             TN S HV               D +WY D+GAT+H+T +L  L+I  +Y GGD++   
Sbjct: 284 AATN-SYHV---------------DTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTA 327

Query: 530 NGSGPS 547
           +GS  S
Sbjct: 328 SGSDNS 333



 Score = 35.8 bits (81), Expect(2) = 2e-16
 Identities = 27/83 (32%), Positives = 39/83 (46%)
 Frame = +3

Query: 522 NLGMVQDQATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAFSAAV 701
           N  +++D+ T  +LL+G    GLY             AT  I +++            AV
Sbjct: 341 NFFVIKDKDTKNILLKGRCHKGLYPI----------PATSTIKNAL-----------GAV 379

Query: 702 NKKHSLVVWHNRLGHPSMDIVKR 770
             K S+  WHNRLGHPS  IV++
Sbjct: 380 --KPSMSRWHNRLGHPSSFIVRQ 400


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 969

 Score = 77.0 bits (188), Expect(2) = 2e-16
 Identities = 57/186 (30%), Positives = 82/186 (44%), Gaps = 4/186 (2%)
 Frame = +2

Query: 2   SFENRLESYDNHGNTENSQFYVNLTTQSQVNTYRRGGFNQAGRG-RGSSQNTRGGRSQGR 178
           +FE +L+     G  E  Q   N+  +      R G   +  RG RGSS+  R   S GR
Sbjct: 176 NFETKLDLM--RGGGEQHQGSANMAGRGGRGNQRGGSGGRGQRGGRGSSRGGRASWSGGR 233

Query: 179 TAN---YXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTG 349
            +N   Y             CQ+C    HTA +C++R + +FVP            +  G
Sbjct: 234 QSNQGGYIRRSNNSSDERPVCQVCFKKGHTAARCWHRFEEDFVPDE----------KLAG 283

Query: 350 HNTNPSVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLG 529
             TN S HV               D +WY D+GAT+H+T +L  L+I  +Y GGD++   
Sbjct: 284 AATN-SYHV---------------DTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTA 327

Query: 530 NGSGPS 547
           +GS  S
Sbjct: 328 SGSDNS 333



 Score = 35.8 bits (81), Expect(2) = 2e-16
 Identities = 27/83 (32%), Positives = 39/83 (46%)
 Frame = +3

Query: 522 NLGMVQDQATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAFSAAV 701
           N  +++D+ T  +LL+G    GLY             AT  I +++            AV
Sbjct: 341 NFFVIKDKDTKNILLKGRCHKGLYPI----------PATSTIKNAL-----------GAV 379

Query: 702 NKKHSLVVWHNRLGHPSMDIVKR 770
             K S+  WHNRLGHPS  IV++
Sbjct: 380 --KPSMSRWHNRLGHPSSFIVRQ 400


>ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488260 [Cicer arietinum]
          Length = 752

 Score = 66.2 bits (160), Expect(2) = 1e-15
 Identities = 49/169 (28%), Positives = 68/169 (40%)
 Frame = +2

Query: 2   SFENRLESYDNHGNTENSQFYVNLTTQSQVNTYRRGGFNQAGRGRGSSQNTRGGRSQGRT 181
           +FENR+E  +N  N   +    NL +Q+   + + G      RG     N RGGR +GR+
Sbjct: 252 AFENRMEQLNNFSNLSMNAS-ANLASQTHFRSNKSGT-----RGNWRGSNFRGGRGRGRS 305

Query: 182 ANYXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHNTN 361
                           CQ+C+   HT  +CFYR D ++             +     N  
Sbjct: 306 K-------------PTCQVCNKIGHTTVQCFYRFDKSYT-----------CSNHYAENNK 341

Query: 362 PSVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQG 508
              H A I +  +       D  WY DSGA NHVT+    L   SE  G
Sbjct: 342 QENHSAFIASPYHG-----QDYEWYFDSGANNHVTHQNEKLQDLSESNG 385



 Score = 43.5 bits (101), Expect(2) = 1e-15
 Identities = 26/83 (31%), Positives = 41/83 (49%)
 Frame = +3

Query: 543 QATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAFSAAVNKKHSLV 722
           ++ G  LL+G +KDGLY  + +   NSQ      I  SV   K+N               
Sbjct: 382 ESNGNALLKGKVKDGLYQLSSA---NSQVNKDSCIYMSV---KEN--------------- 420

Query: 723 VWHNRLGHPSMDIVKRALQGCNI 791
            WH +LGHP+  ++++ L+ CN+
Sbjct: 421 -WHRKLGHPNNKVLEKVLKNCNV 442


>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score = 87.0 bits (214), Expect = 7e-15
 Identities = 64/196 (32%), Positives = 82/196 (41%), Gaps = 19/196 (9%)
 Frame = +2

Query: 11  NRLESYDNHGNTENSQFYVNLTTQSQVNTYRRGGFNQAGRGRGSSQNTRG-GRSQGRTAN 187
           N    Y N G +  S +  N    S      + G NQ  RG       RG GR+QG    
Sbjct: 124 NYTSQYSNRGXS--SSWNSNGYPSSGFQNXNQFGGNQXTRGSFVHNRGRGRGRAQG---- 177

Query: 188 YXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHNTNPS 367
                         CQ+C+   HT  +CFYR D NF                +G     S
Sbjct: 178 ---------GIKPQCQLCNKFGHTVHRCFYRYDPNF-HGNMPANGPTPGVLGSGARNGAS 227

Query: 368 VHVASIGNSG-----NDIHQDMSDMS-------------WYPDSGATNHVTYDLGNLNIA 493
             ++S GN          +QD S+M              W+PDSGATNHVT+DLGNLN  
Sbjct: 228 GSISSAGNVNLTEYDAQENQDYSEMEAMVATPEDLQNCCWFPDSGATNHVTHDLGNLNSG 287

Query: 494 SEYQGGDKVQLGNGSG 541
           +EY G  K+ +GNG+G
Sbjct: 288 AEYNGNSKIHMGNGTG 303


>emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera]
          Length = 763

 Score = 65.5 bits (158), Expect(2) = 2e-14
 Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 7/169 (4%)
 Frame = +2

Query: 38  GNTENSQFYVNLTTQSQVNTYRRGGFNQAGRG--RGSSQNTRGGRSQGRTANYXXXXXXX 211
           G   N+QF  N         + RG F+  GRG  +G      GGR    T N        
Sbjct: 102 GFISNNQFSPN---------FGRGNFSPRGRGGFQGXGHFNNGGRRSWNTWN---NNVIA 149

Query: 212 XXXXXXCQICHYNNHTADKCFYRLDMNFV-PXXXXXXXXXXXTQQT----GHNTNPSVHV 376
                 CQ+C    H+ D+C+Y+ D +F  P           + QT    G+  N  V +
Sbjct: 150 NAEKMVCQLCMKIGHSVDRCYYKYDPSFQGPRTLGFTPSFQRSPQTQVQGGNKPNMQVLM 209

Query: 377 ASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQ 523
           A++ N        + D +WYPDSGA+ HVT +  NL   + Y G ++V+
Sbjct: 210 ATLEN--------ICDTNWYPDSGASXHVTANANNLVEHTXYYGNEQVR 250



 Score = 40.4 bits (93), Expect(2) = 2e-14
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
 Frame = +3

Query: 540 DQATGGVLLRGTLKDGLYSFNLSKCN-NSQPKATYAIPSSVQFSKKNPSA---FSAAV-- 701
           DQ +  V++ G LKDG+Y+F+ S         +  ++  SV   + +P A    S  V  
Sbjct: 253 DQVSKIVVMEGKLKDGMYAFDSSXIQLQKYAPSQVSLSQSVTSHQSDPRANCQVSVHVSD 312

Query: 702 ----NKKHSLVVWHNRLGHPSMDIVKRAL 776
               N   ++ +WH+RL HPS  IV+  +
Sbjct: 313 LQSHNGSXTIGLWHDRLSHPSFKIVQTVM 341


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1180

 Score = 69.7 bits (169), Expect(2) = 3e-14
 Identities = 51/170 (30%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
 Frame = +2

Query: 65  VNLTTQSQVNTYRRG---GFNQAGRGRGSSQNT------RGGRSQGR---TANYXXXXXX 208
           + L  +   N   RG   G  Q GRG G+  N       RGG++ GR     +Y      
Sbjct: 210 MKLRQEHSANLAHRGRGRGQQQQGRGCGNQGNQQQQQCGRGGKNCGRGRGNTSYQRQGGN 269

Query: 209 XXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHNTNPSVHVASIG 388
                  CQ+C+   HT   C+YR D +FVP                         AS G
Sbjct: 270 NTDNRPKCQLCYKRGHTVIDCWYRYDEDFVPDEKYAGT-----------------AASYG 312

Query: 389 NSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLGNGS 538
                      D +WY D+GAT+H+T +L  L I  +Y+G D+VQ  NG+
Sbjct: 313 ----------VDSNWYVDTGATDHITGELEKLTIRDKYKGQDQVQAANGA 352



 Score = 35.4 bits (80), Expect(2) = 3e-14
 Identities = 25/85 (29%), Positives = 39/85 (45%)
 Frame = +3

Query: 540 DQATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAFSAAVNKKHSL 719
           DQA   +LLRG  +  L+                 +PSS   + ++  A +A      SL
Sbjct: 353 DQAMKEILLRGRCRGRLFP----------------LPSSSPSAHQDKEALAATTP---SL 393

Query: 720 VVWHNRLGHPSMDIVKRALQGCNIP 794
             WH RLGHPS  I ++ ++  ++P
Sbjct: 394 ERWHCRLGHPSYAIAEKVVRNHDLP 418


>gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 60/193 (31%), Positives = 82/193 (42%), Gaps = 4/193 (2%)
 Frame = +2

Query: 2   SFENRLESYDNHGNTENSQFYVNLTTQSQVNTYRRGGFNQAGRG-RGSSQNTRGGRSQ-- 172
           SFE R E +   G   +      +   ++V +   G F Q GRG RG     RGGRSQ  
Sbjct: 216 SFETRQEYHTAVGQISS------VNNANRVPSRGGGAFGQNGRGGRG-----RGGRSQPG 264

Query: 173 -GRTANYXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTG 349
            G                  CQIC   NH A +C++R D  +                  
Sbjct: 265 RGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQAYQAE--------------- 309

Query: 350 HNTNPSVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLG 529
                    +++  +    H+   D +WY DSGAT+H+T DL  L     Y GGDK+Q+ 
Sbjct: 310 ---------STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVA 360

Query: 530 NGSGPSHRGSTSQ 568
           NG+G SH  S+SQ
Sbjct: 361 NGAGSSHEASSSQ 373


>gb|ACL54615.1| unknown [Zea mays]
          Length = 376

 Score = 82.8 bits (203), Expect = 1e-13
 Identities = 60/193 (31%), Positives = 82/193 (42%), Gaps = 4/193 (2%)
 Frame = +2

Query: 2   SFENRLESYDNHGNTENSQFYVNLTTQSQVNTYRRGGFNQAGRG-RGSSQNTRGGRSQ-- 172
           SFE R E +   G   +      +   ++V +   G F Q GRG RG     RGGRSQ  
Sbjct: 216 SFETRQEYHTAVGQISS------VNNANRVPSRGGGAFGQNGRGGRG-----RGGRSQPG 264

Query: 173 -GRTANYXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTG 349
            G                  CQIC   NH A +C++R D  +                  
Sbjct: 265 RGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQAYQAE--------------- 309

Query: 350 HNTNPSVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLG 529
                    +++  +    H+   D +WY DSGAT+H+T DL  L     Y GGDK+Q+ 
Sbjct: 310 ---------STVKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRERYTGGDKIQVA 360

Query: 530 NGSGPSHRGSTSQ 568
           NG+G SH  S+SQ
Sbjct: 361 NGAGSSHEASSSQ 373


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 81.6 bits (200), Expect = 3e-13
 Identities = 53/182 (29%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
 Frame = +2

Query: 2   SFENRLESYDNHGNTENSQFYVNLTTQSQVNTYRRGGFN--QAGRGRGSSQNTRGGRSQG 175
           S+ENR+      G++   Q   N  +  +  ++ R G      GRGRG   +  G +S G
Sbjct: 206 SYENRMHLQT--GSSSLMQSSANARSPGRGMSWGRSGGRGFSRGRGRGRGPSRGGFQSFG 263

Query: 176 RTANYXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHN 355
           R  NY             CQ+C    HTA  C+YR D N+VP                  
Sbjct: 264 RGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQR--------------- 308

Query: 356 TNPSVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLGNG 535
                      ++ +  HQ+ S++ WY D+GAT+H+T DL  L +  +Y G D++   NG
Sbjct: 309 -----------SANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANG 357

Query: 536 SG 541
           +G
Sbjct: 358 TG 359


>emb|CAN68496.1| hypothetical protein VITISV_010947 [Vitis vinifera]
          Length = 1539

 Score = 51.2 bits (121), Expect(2) = 4e-13
 Identities = 30/102 (29%), Positives = 49/102 (48%)
 Frame = +2

Query: 230 CQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHNTNPSVHVASIGNSGNDIH 409
           CQ+C    HT  KC++R D+ +             T     + + S   A +  + N  H
Sbjct: 554 CQLCGKFGHTVVKCYHRFDITY-----------QGTNGVSSSQDSSPLQAMLAATPN--H 600

Query: 410 QDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLGNG 535
           QD    SW+ D+GAT+H+++    L+    Y G D+V +G+G
Sbjct: 601 QD----SWFFDTGATHHLSHSAQTLSHVQPYSGADQVTIGDG 638



 Score = 50.1 bits (118), Expect(2) = 4e-13
 Identities = 30/83 (36%), Positives = 39/83 (46%)
 Frame = +3

Query: 540 DQATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAFSAAVNKKHSL 719
           DQ T   LL+G L+DGLY F  S        +T+A  S+       P A           
Sbjct: 647 DQVTKQTLLKGWLRDGLYEFPSSS-------STHAFVSTSSVPALTPGA----------- 688

Query: 720 VVWHNRLGHPSMDIVKRALQGCN 788
            +WH+RLGHP   I+ +AL  CN
Sbjct: 689 -IWHSRLGHPXXPILSKALASCN 710


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score = 80.1 bits (196), Expect = 8e-13
 Identities = 62/185 (33%), Positives = 82/185 (44%), Gaps = 7/185 (3%)
 Frame = +2

Query: 2   SFENRLESYDNHGNTENSQFYVNLTTQSQVNTYRRGG---FNQAGRGRGSSQN----TRG 160
           +FE+RLE       +   Q   N  + S      RGG   FN  GRG+G S N    T  
Sbjct: 216 AFEHRLEQ-----QSSIEQMSANYASSSN----NRGGGRKFN-GGRGQGYSPNNNNYTYR 265

Query: 161 GRSQGRTANYXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQ 340
           GR +G                  CQ+C    HTA  C++R D++F             + 
Sbjct: 266 GRGRGGRNGQGGRQNSSPSEKPQCQLCGKFGHTAQICYHRFDISF----QGGQTTISHSL 321

Query: 341 QTGHNTNPSVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKV 520
             G+  N    VAS  N+        +D SWY DSGA++H+T +LGNL   S Y G DKV
Sbjct: 322 NNGNQNNIPAMVASASNNP-------ADESWYLDSGASHHLTQNLGNLTSTSPYTGTDKV 374

Query: 521 QLGNG 535
            +GNG
Sbjct: 375 TIGNG 379


>emb|CAN66999.1| hypothetical protein VITISV_019171 [Vitis vinifera]
          Length = 955

 Score = 78.2 bits (191), Expect = 3e-12
 Identities = 62/193 (32%), Positives = 83/193 (43%), Gaps = 21/193 (10%)
 Frame = +2

Query: 26  YDNHGNTE--NSQFYVNLTTQSQVNTYRRGGFNQAGRGRGSSQNTRG-GRSQGRTANYXX 196
           Y N G++   NS  Y +   Q++     + G NQ  RG       RG GR+QG       
Sbjct: 131 YSNRGSSSSWNSNGYPSSGFQNR----NQFGGNQVTRGSFVHNRGRGRGRAQG------- 179

Query: 197 XXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHNTNPSVHV 376
                      CQ+C+   HT  +CFYR D NF                +G        +
Sbjct: 180 ------GIKPQCQLCNKFGHTVHRCFYRYDPNF-HGNMXANGPTPGVLGSGARNGAXGSI 232

Query: 377 ASIGNSGNDIH-----QDMSDMS-------------WYPDSGATNHVTYDLGNLNIASEY 502
           +S GN     +     QD S+M              W+PDS ATNHVT+DLGNLN  +EY
Sbjct: 233 SSAGNVNLTEYDAQEDQDYSEMEAMVATXEDLQNCCWFPDSRATNHVTHDLGNLNSGAEY 292

Query: 503 QGGDKVQLGNGSG 541
            G  K+ +GN +G
Sbjct: 293 NGNSKIHMGNETG 305


>emb|CAN67247.1| hypothetical protein VITISV_008682 [Vitis vinifera]
          Length = 1270

 Score = 51.2 bits (121), Expect(2) = 4e-12
 Identities = 31/83 (37%), Positives = 40/83 (48%)
 Frame = +3

Query: 540 DQATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAFSAAVNKKHSL 719
           DQ T   LL+G LKDGLY F  S        +T+A  S+       P A           
Sbjct: 329 DQVTKQTLLKGWLKDGLYEFPSSS-------STHAFVSTSSIPALTPGA----------- 370

Query: 720 VVWHNRLGHPSMDIVKRALQGCN 788
            +WH+RLGHP+  I+ +AL  CN
Sbjct: 371 -IWHSRLGHPAAPILSKALAFCN 392



 Score = 47.0 bits (110), Expect(2) = 4e-12
 Identities = 27/102 (26%), Positives = 48/102 (47%)
 Frame = +2

Query: 230 CQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHNTNPSVHVASIGNSGNDIH 409
           CQ+C    HT  KC++R D+ +                +  +++P   + +I       H
Sbjct: 236 CQLCGKFGHTVVKCYHRFDITYQGTNGV---------SSSQDSSPLQAMLTIAPD----H 282

Query: 410 QDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLGNG 535
           QD    SW+ D+GAT+H+++    L+    Y G D+V + +G
Sbjct: 283 QD----SWFFDTGATHHLSHSAQTLSHVQPYSGADQVTIADG 320


>emb|CAN78864.1| hypothetical protein VITISV_007439 [Vitis vinifera]
          Length = 1014

 Score = 48.1 bits (113), Expect(2) = 2e-11
 Identities = 42/142 (29%), Positives = 57/142 (40%), Gaps = 7/142 (4%)
 Frame = +2

Query: 56  QFYVNLTTQSQVNTYRRGG---FNQAGRGRGSSQN----TRGGRSQGRTANYXXXXXXXX 214
           Q + N  + S      RGG   FN  GRG+G + N    T  GR +G             
Sbjct: 93  QMFANYVSSSN----NRGGGRKFN-GGRGQGYAPNNNNYTYRGRGRGGRNGQGGRQNSNP 147

Query: 215 XXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHNTNPSVHVASIGNS 394
                CQ+C    HTA  C+++ D++F             +   G+  N    VAS  NS
Sbjct: 148 SEKPQCQLCGKFGHTAQICYHKFDISF----QGGQITTSPSLNNGNQNNIPTVVASSSNS 203

Query: 395 GNDIHQDMSDMSWYPDSGATNH 460
                   +D SWY DSGA N+
Sbjct: 204 -------PTDESWYLDSGANNN 218



 Score = 47.8 bits (112), Expect(2) = 2e-11
 Identities = 33/95 (34%), Positives = 48/95 (50%)
 Frame = +3

Query: 510 ETRCNLGMVQDQATGGVLLRGTLKDGLYSFNLSKCNNSQPKATYAIPSSVQFSKKNPSAF 689
           E   N+  V+D+ T  VL +G L+ GLY F +   +N +P       S +  +    S F
Sbjct: 222 EFHSNVFFVKDRHTKMVLAQGKLEHGLYKFPVF--SNKKPY------SXINNASAFHSHF 273

Query: 690 SAAVNKKHSLVVWHNRLGHPSMDIVKRALQGCNIP 794
           S+ V  K  L  WHNRLGH + DIV +  +   +P
Sbjct: 274 SSTVENKAEL--WHNRLGHVASDIVSKLAKSHRLP 306


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
          Length = 1621

 Score = 75.1 bits (183), Expect = 3e-11
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 15/182 (8%)
 Frame = +2

Query: 41  NTENSQFYVNLTTQSQVNTYRRGGFNQAGRG-----RGSSQ----------NTRGGRSQG 175
           N E  Q       +  VN   RGGF+  GRG     +G S+          N  GGR +G
Sbjct: 292 NFEARQAIYRGAQEVTVNVANRGGFSHGGRGNSNGGQGGSRGGGGGGHGRGNGGGGRGRG 351

Query: 176 RTANYXXXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHN 355
           RT                CQ+C    HTA  C+YR D ++VP                  
Sbjct: 352 RTPG-------GVDKRPICQVCFKRGHTAADCWYRYDEDYVPD----------------- 387

Query: 356 TNPSVHVASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLGNG 535
              + HVA+   +   +     D +WY D+GAT+HVT +L  L +  +Y GG+++   +G
Sbjct: 388 ---AKHVAAAAVNSYGV-----DTNWYIDTGATDHVTGELDKLTMKEKYNGGEQIHTASG 439

Query: 536 SG 541
           +G
Sbjct: 440 AG 441


>emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera]
          Length = 1139

 Score = 74.7 bits (182), Expect = 3e-11
 Identities = 48/147 (32%), Positives = 66/147 (44%)
 Frame = +2

Query: 95  TYRRGGFNQAGRGRGSSQNTRGGRSQGRTANYXXXXXXXXXXXXXCQICHYNNHTADKCF 274
           T     +   GRGRG  +N +GGR     +               CQ+C    HTA  C+
Sbjct: 227 TLNNNNYTYRGRGRGG-RNGQGGRQNSSPSE-----------KPQCQLCGKFGHTAQICY 274

Query: 275 YRLDMNFVPXXXXXXXXXXXTQQTGHNTNPSVHVASIGNSGNDIHQDMSDMSWYPDSGAT 454
           +R D++F             +   G+  N    VAS  NS        +D SWY DSG +
Sbjct: 275 HRFDISF----QGGQTTTSHSLNNGNQNNIPTMVASASNSP-------ADESWYLDSGTS 323

Query: 455 NHVTYDLGNLNIASEYQGGDKVQLGNG 535
           +H+T +LGNL   S Y G D+V +GNG
Sbjct: 324 HHLTQNLGNLTSTSLYTGTDRVTIGNG 350


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 74.3 bits (181), Expect = 5e-11
 Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 9/176 (5%)
 Frame = +2

Query: 41  NTENSQFYVNLTTQSQVNTYRRGGFNQAGRGR--GSSQNTRGG-------RSQGRTANYX 193
           N E  Q       +  VN   RGGF+  GRG   G    +RGG       R  G   +  
Sbjct: 206 NFEARQAIYRGAQEVTVNVANRGGFSHGGRGNSNGGQGGSRGGGGGGGHGRGNGGGGHGR 265

Query: 194 XXXXXXXXXXXXCQICHYNNHTADKCFYRLDMNFVPXXXXXXXXXXXTQQTGHNTNPSVH 373
                       CQ+C    HTA  C+YR D ++VP                     + H
Sbjct: 266 GRTPGGVDKRPICQVCFKRGHTAADCWYRYDEDYVPD--------------------AKH 305

Query: 374 VASIGNSGNDIHQDMSDMSWYPDSGATNHVTYDLGNLNIASEYQGGDKVQLGNGSG 541
           VA+   +   +     D +WY D+GAT+HVT +L  L +  +Y GG+++   +G+G
Sbjct: 306 VAAAAVNSYGV-----DTNWYIDTGATDHVTGELDKLTMKEKYNGGEQIHTASGAG 356