BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00025479
         (855 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...   215   1e-53
gb|EMJ11427.1| hypothetical protein PRUPE_ppa015539mg [Prunus pe...   191   7e-52
emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulga...   209   1e-51
emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...   209   1e-51
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   207   3e-51
ref|XP_004954924.1| PREDICTED: uncharacterized protein LOC101756...   206   9e-51
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   202   1e-49
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   200   5e-49
gb|ABF97084.1| retrotransposon protein, putative, unclassified [...   200   6e-49
gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza ...   200   6e-49
gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [...   199   1e-48
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   199   1e-48
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   199   1e-48
ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein A...   196   1e-47
gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus pe...   195   2e-47
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...   195   2e-47
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   194   4e-47
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   193   8e-47
ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein A...   192   1e-46
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...   192   1e-46

>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score =  215 bits (548), Expect = 1e-53
 Identities = 103/224 (45%), Positives = 148/224 (66%)
 Frame = +1

Query: 184  GFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADD 363
            G V P+RG+RQGDP+SP+LF+++++AFS +++Q   +K I G + S+  P I+H+ FADD
Sbjct: 632  GSVTPSRGLRQGDPLSPFLFILVADAFSQMVKQKVVSKEIHGAKASRNGPEISHLLFADD 691

Query: 364  ALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKE 543
            +LLF  A   +    + +L+ Y  ASGQKINY+KS V FS   S + +  +  +L+  + 
Sbjct: 692  SLLFTRATRQECLTIVDILNKYEAASGQKINYEKSEVSFSRGVSCEKKEELITLLHMRQV 751

Query: 544  QRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYV 723
             R  K+LG+P   GRSKK +F+  +D   K++  WK   LS AGKEVLIK+VI ALP Y+
Sbjct: 752  DRHQKYLGIPALCGRSKKVLFRELLDRMWKKLRGWKEKLLSRAGKEVLIKAVIQALPTYL 811

Query: 724  MS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            M  YKLP  +  E++  ++RFWWG + D   KMHW+SW KMC P
Sbjct: 812  MGVYKLPVAVIQEIHSAMARFWWGGKGD-ERKMHWLSWEKMCKP 854



 Score = 70.9 bits (172), Expect = 6e-10
 Identities = 32/79 (40%), Positives = 51/79 (64%)
 Frame = +2

Query: 14  KQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEARGLC 193
           K  MA+KLDM+KAYDRVEW F++ +L  MGF   +V+ +++C+++ S++F+++G   G  
Sbjct: 575 KGLMAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLVMSCVATVSYSFIINGRVCGSV 634

Query: 194 VQQEGLDKGIQYPPIFFSL 250
               GL +G    P  F L
Sbjct: 635 TPSRGLRQGDPLSPFLFIL 653


>gb|EMJ11427.1| hypothetical protein PRUPE_ppa015539mg [Prunus persica]
          Length = 787

 Score =  191 bits (486), Expect(2) = 7e-52
 Identities = 92/224 (41%), Positives = 141/224 (62%)
 Frame = +1

Query: 184 GFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADD 363
           G+V P RG+RQGDP+SPYLFL+ +EA S+LI QA++  L+ G+ + + A  ++H+FFADD
Sbjct: 220 GYVIPQRGLRQGDPLSPYLFLLCAEALSSLILQAERRNLLHGVNLCRGATSVSHLFFADD 279

Query: 364 ALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKE 543
           + LF  AN         +   Y   SGQKI+ +KS V FS N     +  +  VL   + 
Sbjct: 280 SFLFLRANQQDCEQMSIIFQKYEMVSGQKIHLEKSCVSFSNNMDRTDQDNLAAVLGVRRV 339

Query: 544 QRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYV 723
            +   +LGLP  +GRS+++ F    +   K++  WKA  LS AGKE+L+K V  A+P Y+
Sbjct: 340 DQHDVYLGLPTHVGRSRRQCFNSLKERIWKKIQGWKAKLLSFAGKEILLKVVAQAVPIYM 399

Query: 724 MS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
           M+ + +P  + +E+ +V++ +WWG + DG  K+HW+SW K+CLP
Sbjct: 400 MNCFLIPKCLCDEIQQVMAHYWWGEQ-DGQRKIHWLSWNKLCLP 442



 Score = 40.0 bits (92), Expect(2) = 7e-52
 Identities = 14/31 (45%), Positives = 25/31 (80%)
 Frame = +2

Query: 8   GSKQFMAIKLDMAKAYDRVEWNFVKVVLNKM 100
           G + ++A+K+DM+KAYDR EW+F++ ++  M
Sbjct: 188 GRQGYLALKIDMSKAYDRAEWSFLEALMKGM 218


>emb|CCA66054.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  209 bits (531), Expect = 1e-51
 Identities = 100/222 (45%), Positives = 145/222 (65%)
 Frame = +1

Query: 184  GFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADD 363
            G V PARG+RQGDP+SPYLF+++++AFS +I++  ++K + G + S++ P I+H+FFADD
Sbjct: 629  GSVVPARGLRQGDPLSPYLFIMVADAFSKMIQRKVQDKQLHGAKASRSGPEISHLFFADD 688

Query: 364  ALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKE 543
            +LLF  AN  +    + +L+ Y  ASGQKINY+KS V +S   S   +  +  +LN  + 
Sbjct: 689  SLLFTRANRQECTIIVDILNQYELASGQKINYEKSEVSYSRGVSVSQKDELTNILNMRQV 748

Query: 544  QRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYV 723
             R  K+LG+P   GRSKK +F   +D   K++  WK   LS AGKEVL+KSVI A+P Y+
Sbjct: 749  DRHEKYLGIPSISGRSKKAIFDSLIDRIWKKLQGWKEKLLSRAGKEVLLKSVIQAIPTYL 808

Query: 724  MS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMC 849
            M  YK P  I  ++   ++RFWWG+  D   K+HW +W  MC
Sbjct: 809  MGVYKFPVFIIQKIQSAMARFWWGS-SDTQRKIHWKNWDSMC 849



 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 34/81 (41%), Positives = 52/81 (64%)
 Frame = +2

Query: 2   RKGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEA 181
           RKG+   +A+KLDM+KAYDRVEW F++ +L  MGF   +V+ I+  +SS +++F+++G  
Sbjct: 571 RKGT---IAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLIMEFVSSVTYSFIINGSV 627

Query: 182 RGLCVQQEGLDKGIQYPPIFF 244
            G  V   GL +G    P  F
Sbjct: 628 CGSVVPARGLRQGDPLSPYLF 648


>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  209 bits (531), Expect = 1e-51
 Identities = 97/222 (43%), Positives = 147/222 (66%)
 Frame = +1

Query: 184  GFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADD 363
            G V PARG+R GDP+SPYLF++I++AFS +I++  + K + G + S++ PVI+H+FFAD 
Sbjct: 629  GSVTPARGLRHGDPLSPYLFILIADAFSKMIQKKVQEKQLHGAKASRSGPVISHLFFADV 688

Query: 364  ALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKE 543
            +LLF  A+  +    + +L+ Y +ASGQKINYDKS V FS   S   +  +  +L   + 
Sbjct: 689  SLLFTRASRQECAIIVEILNLYEQASGQKINYDKSEVSFSKGVSIAQKEELSNILQMKQV 748

Query: 544  QRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYV 723
            +R +K+LG+P   GRS+  +F   +D   K++  WK   LS AGKE+L+KSVI A+P Y+
Sbjct: 749  ERHMKYLGIPSITGRSRTAIFDSLMDRIWKKLQGWKEKLLSRAGKEILLKSVIQAIPTYL 808

Query: 724  MS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMC 849
            M  YKLPC I  +++  ++RFWWG+  D   ++HW +W  +C
Sbjct: 809  MGVYKLPCSIIQKIHSAMARFWWGS-SDTQRRIHWKNWDSLC 849



 Score = 70.5 bits (171), Expect = 7e-10
 Identities = 38/94 (40%), Positives = 56/94 (59%)
 Frame = +2

Query: 2   RKGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEA 181
           RKG+   +A+KLDM+KAYDRVEW F++ +L  MGF   +V+ I++C+SS S++F+++G  
Sbjct: 571 RKGT---IAMKLDMSKAYDRVEWGFLRKLLLTMGFDGRWVNLIMSCVSSVSYSFIINGGV 627

Query: 182 RGLCVQQEGLDKGIQYPPIFFSLFLRHFLISLNK 283
            G      GL  G    P  F L    F   + K
Sbjct: 628 CGSVTPARGLRHGDPLSPYLFILIADAFSKMIQK 661


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  207 bits (528), Expect = 3e-51
 Identities = 101/225 (44%), Positives = 146/225 (64%)
 Frame = +1

Query: 181  KGFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFAD 360
            +G + P+RG+RQGDPISPYLFL+ ++AFS L+ +A   K I G +I + APV++H+FFAD
Sbjct: 627  EGSLSPSRGLRQGDPISPYLFLLCADAFSTLLSKAASEKKIHGAQICRGAPVVSHLFFAD 686

Query: 361  DALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMK 540
            D++LF +A+  +      ++  Y  ASGQ++N  K+ V FS +   + R  I  VL   +
Sbjct: 687  DSILFTKASVQECSMVADIISKYERASGQQVNLSKTEVVFSRSVDRERRSAIVNVLGVKE 746

Query: 541  EQRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNY 720
              R+ K+LGLP  IGRSKK  F    +   K++  WK   LS  GKEVLIKSV  A+P Y
Sbjct: 747  VDRQEKYLGLPTIIGRSKKVTFACIKERIWKKLQGWKEKLLSRPGKEVLIKSVAQAIPTY 806

Query: 721  VMS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            +MS + LP G+ +E++ +++RFWWG+  D + KMHW SW  +C P
Sbjct: 807  MMSVFSLPSGLIDEIHSLLARFWWGS-SDTNRKMHWHSWDTLCYP 850



 Score = 72.4 bits (176), Expect = 2e-10
 Identities = 39/86 (45%), Positives = 51/86 (59%)
 Frame = +2

Query: 26  AIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEARGLCVQQE 205
           A+KLDM+KAYDRVEW F++ V+ KMGF   ++  ++ACISS SF F V+G   G      
Sbjct: 575 ALKLDMSKAYDRVEWCFLERVMKKMGFCDGWIDRVMACISSVSFTFNVNGVVEGSLSPSR 634

Query: 206 GLDKGIQYPPIFFSLFLRHFLISLNK 283
           GL +G    P  F L    F   L+K
Sbjct: 635 GLRQGDPISPYLFLLCADAFSTLLSK 660


>ref|XP_004954924.1| PREDICTED: uncharacterized protein LOC101756955 [Setaria italica]
          Length = 1203

 Score =  206 bits (524), Expect = 9e-51
 Identities = 95/220 (43%), Positives = 143/220 (65%)
 Frame = +1

Query: 196  PARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADDALLF 375
            P+RG+RQGDP+SPYLFL+++E  S +I +A++   + G+++ + AP I+H+ FADD+L+ 
Sbjct: 495  PSRGLRQGDPLSPYLFLMVAEGLSCMIRKAEERGDLIGVKVCRDAPTISHLLFADDSLIL 554

Query: 376  CEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKEQRKI 555
             +A+   A    S+L+ YC +SGQKI+  KSS++FS NT  D +  +C +LN M E    
Sbjct: 555  MQADKNNADCLASILNRYCASSGQKISEAKSSIYFSANTEADQKTEVCQILNIMTESLND 614

Query: 556  KHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYVMS*Y 735
            K+LGLP  +G  +   F++ +D    R+  WK   LSL GKE+LIKS+  A+P Y M  +
Sbjct: 615  KYLGLPALVGLDRSNCFRHLIDRVNTRINGWKEKTLSLGGKEILIKSIAQAVPVYAMMVF 674

Query: 736  KLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            ++P  I   +   IS++WWG+ DD   +MHW  W KMCLP
Sbjct: 675  QIPKSICKGITNAISQYWWGD-DDEHRRMHWQEWWKMCLP 713


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  202 bits (514), Expect = 1e-49
 Identities = 94/220 (42%), Positives = 146/220 (66%)
 Frame = +1

Query: 196  PARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADDALLF 375
            P RG+RQGDP+SPYLFL+ +E FS L+ + ++   + G+RI + AP ++H+ FADD+L+ 
Sbjct: 885  PGRGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLIL 944

Query: 376  CEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKEQRKI 555
            C AN  +A    ++L  Y E SGQ IN DKS+V FS NTS   +R +   LN  +E    
Sbjct: 945  CRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNE 1004

Query: 556  KHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYVMS*Y 735
            ++LGLP+ +GRS+ ++F Y  +   +R+  WK   LS AGKE+LIK+V  A+P + M  +
Sbjct: 1005 RYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCF 1064

Query: 736  KLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            +L   + +++ K+I+++WW N++   +KMHW+SW K+ LP
Sbjct: 1065 ELTKDLCDQISKMIAKYWWSNQEK-DNKMHWLSWNKLTLP 1103



 Score = 64.7 bits (156), Expect = 4e-08
 Identities = 35/94 (37%), Positives = 52/94 (55%)
 Frame = +2

Query: 2    RKGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEA 181
            R G   + A KLDM+KAYDRVEW+F+  ++ K+GF   +V+ I+ C+S+ ++   V+GE 
Sbjct: 820  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 879

Query: 182  RGLCVQQEGLDKGIQYPPIFFSLFLRHFLISLNK 283
                    GL +G    P  F L    F   L+K
Sbjct: 880  SESFSPGRGLRQGDPLSPYLFLLCAEGFSALLSK 913


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  200 bits (509), Expect = 5e-49
 Identities = 94/220 (42%), Positives = 145/220 (65%)
 Frame = +1

Query: 196  PARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADDALLF 375
            P RG+RQGDP+SPYLFL+ +E FS L+ + ++   + G+RI + AP ++H+ FADD+L+ 
Sbjct: 858  PERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLIL 917

Query: 376  CEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKEQRKI 555
            C AN  +A    ++L  Y E SGQ IN DKS+V FS NTS   +  +   LN  +E    
Sbjct: 918  CRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNE 977

Query: 556  KHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYVMS*Y 735
            K+LGLP+ +GRS+ ++F Y  +   +R+  WK   LS AGKE+LIK+V  A+P + M  +
Sbjct: 978  KYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCF 1037

Query: 736  KLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            +L   + +++ K+I+++WW N++   +KMHW+SW K+ LP
Sbjct: 1038 ELTKDLCDQISKMIAKYWWSNQEK-DNKMHWLSWNKLTLP 1076



 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 35/94 (37%), Positives = 53/94 (56%)
 Frame = +2

Query: 2    RKGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEA 181
            R G   + A KLDM+KAYDRVEW+F+  ++ K+GF   +V+ I+ C+S+ ++   V+GE 
Sbjct: 793  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 852

Query: 182  RGLCVQQEGLDKGIQYPPIFFSLFLRHFLISLNK 283
                  + GL +G    P  F L    F   L+K
Sbjct: 853  SESFSPERGLRQGDPLSPYLFLLCAEGFSALLSK 886


>gb|ABF97084.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  200 bits (508), Expect = 6e-49
 Identities = 93/220 (42%), Positives = 149/220 (67%)
 Frame = +1

Query: 196  PARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADDALLF 375
            P+RG+RQGDP+SPYLFL+++E  S++++ A+    + G+R+ + AP+I+H+ FADD+L+ 
Sbjct: 447  PSRGLRQGDPLSPYLFLLVAEGLSSMLQGAENRGDLVGIRVCREAPMISHLLFADDSLIL 506

Query: 376  CEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKEQRKI 555
             +A+   A +  ++LD YC+ SGQKI+  KSS+FFS NT+ + +  +CG L+ M E    
Sbjct: 507  MQADKNNADHLKAILDIYCQNSGQKISEAKSSIFFSRNTAVEDKAAVCGSLDIMTEALND 566

Query: 556  KHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYVMS*Y 735
            K+LGLP  IG  K + F++ +D    R+   K   LS  GKEVLIKS+  A+P + MS +
Sbjct: 567  KYLGLPAMIGVDKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSVF 626

Query: 736  KLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            ++P  I + + + I+RFWWG+ D+   ++HW +W +MC+P
Sbjct: 627  RIPKKICDCISEAIARFWWGD-DENHRRIHWKAWWRMCIP 665


>gb|AAK52166.1|AC084831_20 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1185

 Score =  200 bits (508), Expect = 6e-49
 Identities = 93/220 (42%), Positives = 149/220 (67%)
 Frame = +1

Query: 196  PARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADDALLF 375
            P+RG+RQGDP+SPYLFL+++E  S++++ A+    + G+R+ + AP+I+H+ FADD+L+ 
Sbjct: 447  PSRGLRQGDPLSPYLFLLVAEGLSSMLQGAENRGDLVGIRVCREAPMISHLLFADDSLIL 506

Query: 376  CEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKEQRKI 555
             +A+   A +  ++LD YC+ SGQKI+  KSS+FFS NT+ + +  +CG L+ M E    
Sbjct: 507  MQADKNNADHLKAILDIYCQNSGQKISEAKSSIFFSRNTAVEDKAAVCGSLDIMTEALND 566

Query: 556  KHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYVMS*Y 735
            K+LGLP  IG  K + F++ +D    R+   K   LS  GKEVLIKS+  A+P + MS +
Sbjct: 567  KYLGLPAMIGVDKSDCFRHLIDRVNNRINGRKEKMLSTGGKEVLIKSIAQAIPVFAMSVF 626

Query: 736  KLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            ++P  I + + + I+RFWWG+ D+   ++HW +W +MC+P
Sbjct: 627  RIPKKICDCISEAIARFWWGD-DENHRRIHWKAWWRMCIP 665


>gb|EMJ08998.1| hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
          Length = 920

 Score =  199 bits (506), Expect = 1e-48
 Identities = 91/220 (41%), Positives = 143/220 (65%)
 Frame = +1

Query: 196 PARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADDALLF 375
           P+RG+RQGDP+SPYLFL++S+ FS  + +      I G+++++ +PV++H+ FADD+L F
Sbjct: 210 PSRGLRQGDPLSPYLFLLVSDVFSKNLSKCISGGWIKGIKMAQRSPVLSHLLFADDSLFF 269

Query: 376 CEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKEQRKI 555
             A+      F+ LL+ YC ASGQ +N++KS ++FS NT  +L+ TI  +L         
Sbjct: 270 LRADVTNCRRFMHLLNRYCAASGQLVNHEKSCLYFSSNTPAELKTTIGSILAVEGTDNPG 329

Query: 556 KHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYVMS*Y 735
            +LG+P   GRSKK    Y  +  K ++L WK + LSLAGKEVLIK++ +A+P + M  +
Sbjct: 330 NYLGMPTMWGRSKKAAMNYVKERVKDKILGWKQSSLSLAGKEVLIKAIATAIPTFPMQCF 389

Query: 736 KLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
           K   G+ +E+   +++FWWG + +  +K+HW SW  +CLP
Sbjct: 390 KFTKGLCDEINSEMAKFWWG-KPNSDTKIHWKSWSALCLP 428



 Score = 69.7 bits (169), Expect = 1e-09
 Identities = 36/93 (38%), Positives = 57/93 (61%)
 Frame = +2

Query: 5   KGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEAR 184
           +GS+  + +K+DM KAYDRVEW+F++ +L K+GF   +V  I+AC+SS S++ L++G+  
Sbjct: 146 RGSRHELGLKVDMNKAYDRVEWDFLEALLCKLGFCDHWVRLIMACVSSVSYSVLINGKPG 205

Query: 185 GLCVQQEGLDKGIQYPPIFFSLFLRHFLISLNK 283
                  GL +G    P  F L    F  +L+K
Sbjct: 206 PTFRPSRGLRQGDPLSPYLFLLVSDVFSKNLSK 238


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  199 bits (505), Expect = 1e-48
 Identities = 93/220 (42%), Positives = 144/220 (65%)
 Frame = +1

Query: 196  PARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADDALLF 375
            P RG+RQGDP+SPYLFL+ +E FS L+ + ++   + G+RI + AP ++H+ FADD+L+ 
Sbjct: 830  PERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLIL 889

Query: 376  CEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKEQRKI 555
            C AN  +A    ++L  Y E SGQ IN DKS+V FS NTS   +  +   LN  +E    
Sbjct: 890  CRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNE 949

Query: 556  KHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYVMS*Y 735
            K+LGLP+ +GRS+ ++F Y  +   +R+  WK   LS AGKE+LIK+V   +P + M  +
Sbjct: 950  KYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCF 1009

Query: 736  KLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            +L   + +++ K+I+++WW N++   +KMHW+SW K+ LP
Sbjct: 1010 ELTKDLCDQISKMIAKYWWSNQEK-DNKMHWLSWNKLTLP 1048



 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 35/94 (37%), Positives = 53/94 (56%)
 Frame = +2

Query: 2    RKGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEA 181
            R G   + A KLDM+KAYDRVEW+F+  ++ K+GF   +V+ I+ C+S+ ++   V+GE 
Sbjct: 765  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 824

Query: 182  RGLCVQQEGLDKGIQYPPIFFSLFLRHFLISLNK 283
                  + GL +G    P  F L    F   L+K
Sbjct: 825  SESFSPERGLRQGDPLSPYLFLLCAEGFSALLSK 858


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  199 bits (505), Expect = 1e-48
 Identities = 93/220 (42%), Positives = 144/220 (65%)
 Frame = +1

Query: 196  PARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADDALLF 375
            P RG+RQGDP+SPYLFL+ +E FS L+ + ++   + G+RI + AP ++H+ FADD+L+ 
Sbjct: 826  PERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLIL 885

Query: 376  CEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKEQRKI 555
            C AN  +A    ++L  Y E SGQ IN DKS+V FS NTS   +  +   LN  +E    
Sbjct: 886  CRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNE 945

Query: 556  KHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYVMS*Y 735
            K+LGLP+ +GRS+ ++F Y  +   +R+  WK   LS AGKE+LIK+V   +P + M  +
Sbjct: 946  KYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCF 1005

Query: 736  KLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            +L   + +++ K+I+++WW N++   +KMHW+SW K+ LP
Sbjct: 1006 ELTKDLCDQISKMIAKYWWSNQEK-DNKMHWLSWNKLTLP 1044



 Score = 66.2 bits (160), Expect = 1e-08
 Identities = 35/94 (37%), Positives = 53/94 (56%)
 Frame = +2

Query: 2    RKGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEA 181
            R G   + A KLDM+KAYDRVEW+F+  ++ K+GF   +V+ I+ C+S+ ++   V+GE 
Sbjct: 761  RSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGEL 820

Query: 182  RGLCVQQEGLDKGIQYPPIFFSLFLRHFLISLNK 283
                  + GL +G    P  F L    F   L+K
Sbjct: 821  SESFSPERGLRQGDPLSPYLFLLCAEGFSALLSK 854


>ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 786

 Score =  196 bits (497), Expect = 1e-47
 Identities = 96/220 (43%), Positives = 142/220 (64%)
 Frame = +1

Query: 178 GKGFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFA 357
           GK F  P RG+RQGDP+SPYLFLIISE  S  + +A ++K + G+++ +  P ++H+FFA
Sbjct: 63  GKSFF-PGRGLRQGDPLSPYLFLIISEVLSVRLTRAVQDKSLLGIKLCRRGPTLSHMFFA 121

Query: 358 DDALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGM 537
           DDAL F +A        + +   YC+ASGQ IN +KSS +FS NT + + R +  ++   
Sbjct: 122 DDALFFLKATLGNVCRLMEIFKEYCKASGQLINGEKSSAYFSPNTPDQMSRLLGELMGFA 181

Query: 538 KEQRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPN 717
           + +   K+LGLP   GRSKKE   Y VD  +++++ WK   LS AGKE+LIKSV +A+P 
Sbjct: 182 EVEDPGKYLGLPTLWGRSKKEAVGYIVDRVQRKLVGWKQRSLSWAGKEILIKSVATAIPA 241

Query: 718 YVMS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSW 837
           Y M+ +K P G+ + +   +S FWWG+   G +++HW SW
Sbjct: 242 YPMACFKFPKGVCDTINSALSNFWWGSTSTG-NRIHWKSW 280



 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 33/94 (35%), Positives = 53/94 (56%)
 Frame = +2

Query: 2   RKGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEA 181
           ++G    + +KLDM KAYDRVEW+F+K  L + GF+  +V+ I+AC+SS SF+ +++G  
Sbjct: 3   KEGGNNELGLKLDMNKAYDRVEWDFLKAALIRFGFAQSWVNLIMACVSSVSFSIVLNGCP 62

Query: 182 RGLCVQQEGLDKGIQYPPIFFSLFLRHFLISLNK 283
                   GL +G    P  F +      + L +
Sbjct: 63  GKSFFPGRGLRQGDPLSPYLFLIISEVLSVRLTR 96


>gb|EMJ04543.1| hypothetical protein PRUPE_ppa020282mg [Prunus persica]
          Length = 1496

 Score =  195 bits (496), Expect = 2e-47
 Identities = 93/224 (41%), Positives = 143/224 (63%)
 Frame = +1

Query: 184  GFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADD 363
            G+V P RG+RQGDP+SPYLFL+ +EA S+LI QA++  L+ G+ + + AP ++H+FFADD
Sbjct: 988  GYVIPQRGLRQGDPLSPYLFLLCAEALSSLILQAERRNLLHGVNLCRGAPSVSHLFFADD 1047

Query: 364  ALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKE 543
            + LF  A+         +   Y   SGQKI+ +KS V FS+N     +  +  VL   + 
Sbjct: 1048 SFLFLRADQQDCEQLSIIFQKYEMVSGQKIHLEKSCVSFSINMDRTDQDNLAAVLGVRRV 1107

Query: 544  QRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYV 723
             +   +LGLP  +GRS+++ F    +   K++  WKA  LS AGKE+L+K V  A+P Y+
Sbjct: 1108 DQHDVYLGLPTHVGRSRRQCFNSLKERIWKKIQGWKAKLLSFAGKEILLKVVAQAVPIYM 1167

Query: 724  MS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
            M+ + +P  + NE+ +V++R+WW  + DG  K+HW+SW K+CLP
Sbjct: 1168 MNCFLIPKCLCNEIQQVMARYWWVEQ-DGQRKIHWLSWNKLCLP 1210



 Score = 76.6 bits (187), Expect = 1e-11
 Identities = 31/82 (37%), Positives = 57/82 (69%)
 Frame = +2

Query: 5    KGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEAR 184
            +G + ++A+K+DM+KAYDRVEW+F++ ++  MGF+P ++  I+ C+++ S++F+++G   
Sbjct: 928  QGRQGYLALKIDMSKAYDRVEWSFLEALMKGMGFAPRWIQLIMECVTTVSYSFMLNGNPV 987

Query: 185  GLCVQQEGLDKGIQYPPIFFSL 250
            G  + Q GL +G    P  F L
Sbjct: 988  GYVIPQRGLRQGDPLSPYLFLL 1009


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score =  195 bits (495), Expect = 2e-47
 Identities = 95/222 (42%), Positives = 139/222 (62%)
 Frame = +1

Query: 184  GFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADD 363
            G + P+RG+RQGDPISPYLFLI++E  S LI +A++ + I G+ I++ AP ++H+F+ADD
Sbjct: 913  GKIKPSRGLRQGDPISPYLFLIVAEGLSALIRKAEREQQIHGVAIARGAPSVSHLFYADD 972

Query: 364  ALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKE 543
            +LLFC+A         ++   Y  ASGQKIN DKS++ FS  +   ++     +L+    
Sbjct: 973  SLLFCDATVTDCMALKNIFSTYEAASGQKINKDKSAICFSPKSPAAIKEACSAILDMPVV 1032

Query: 544  QRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYV 723
                ++LGLP   G+ KK++FQ   D    RV  W+   LS AGKEVLIK+V  A+PNY 
Sbjct: 1033 PCHERYLGLPTVSGKDKKKLFQSLPDRVWNRVHGWEGKLLSKAGKEVLIKTVAQAIPNYT 1092

Query: 724  MS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMC 849
            MS ++LP G  + + K ++RFWWG   +G   +HW  W  +C
Sbjct: 1093 MSVFQLPAGTSDAINKCVARFWWGK--EGGKGIHWRRWSDLC 1132



 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 35/96 (36%), Positives = 51/96 (53%)
 Frame = +2

Query: 5    KGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEAR 184
            K S+Q +A+KLDM KAYDRVEW F++ ++  MGF   FV  I+ C+ S +++ L+ G   
Sbjct: 853  KDSRQKIALKLDMTKAYDRVEWGFLQRMMEVMGFPDRFVFLIMDCVKSVTYSVLLQGAPF 912

Query: 185  GLCVQQEGLDKGIQYPPIFFSLFLRHFLISLNKLRR 292
            G      GL +G    P  F +        + K  R
Sbjct: 913  GKIKPSRGLRQGDPISPYLFLIVAEGLSALIRKAER 948


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  194 bits (492), Expect = 4e-47
 Identities = 92/225 (40%), Positives = 145/225 (64%)
 Frame = +1

Query: 181  KGFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFAD 360
            +G V P+RG+RQGDP+SPYLF++ +E  S L  +A++  ++ G+R+++ +P +NH+ FAD
Sbjct: 565  QGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFAD 624

Query: 361  DALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMK 540
            D + FC+ N        ++L  Y  ASGQ IN  KS++ FS  T +D++R +   L    
Sbjct: 625  DTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSAITFSSKTPQDIKRRVKLSLRIDN 684

Query: 541  EQRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNY 720
            E    K+LGLP   GR K+++F   VD  ++R  +W   FLS AGK++L+K+V+S++P+Y
Sbjct: 685  EGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWSIRFLSSAGKQILLKAVLSSMPSY 744

Query: 721  VMS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCLP 855
             M  +KLP  +  ++  V++RFWW ++ D   KM WVSW K+ LP
Sbjct: 745  AMMCFKLPASLCKQIQSVLTRFWWDSKPD-KRKMAWVSWDKLTLP 788



 Score = 77.0 bits (188), Expect = 8e-12
 Identities = 34/83 (40%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
 Frame = +2

Query: 8   GSKQF--MAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEA 181
           G+K++  MAIK DM+KAYDR++WNF++ VL ++GF   ++ W++ C+ + S++FL++G  
Sbjct: 505 GAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSP 564

Query: 182 RGLCVQQEGLDKGIQYPPIFFSL 250
           +G  V   GL +G    P  F L
Sbjct: 565 QGSVVPSRGLRQGDPLSPYLFIL 587


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  193 bits (490), Expect = 8e-47
 Identities = 91/223 (40%), Positives = 140/223 (62%)
 Frame = +1

Query: 181  KGFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFAD 360
            KG + P RG+RQGDP+SPYLF++ +E     I +A++  LI+G++++  +P ++H+ FAD
Sbjct: 408  KGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVATPSPAVSHLLFAD 467

Query: 361  DALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMK 540
            D+L FC+AN  Q    + +L  Y   SGQ+IN+ KSS+ F     + ++  I  +L    
Sbjct: 468  DSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHKVEDSIKADIKLILGIHN 527

Query: 541  EQRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNY 720
                  +LGLP ++G SK +VF +  D  + R+  W A FLS  GKEV+IKSV + LP Y
Sbjct: 528  LGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSKGGKEVMIKSVAATLPRY 587

Query: 721  VMS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMC 849
            VMS ++LP  I ++L   +++FWW +  D S  MHW++W K+C
Sbjct: 588  VMSCFRLPKAITSKLTSAVAKFWWSSNGD-SRGMHWMAWDKLC 629



 Score = 87.8 bits (216), Expect = 4e-15
 Identities = 39/94 (41%), Positives = 61/94 (64%)
 Frame = +2

Query: 17  QFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEARGLCV 196
           +FMAIK DM+KAYD+VEWNF++ +L KMGF   ++SWI+ CI++  +  L++G+ +GL +
Sbjct: 353 KFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLII 412

Query: 197 QQEGLDKGIQYPPIFFSLFLRHFLISLNKLRRIN 298
            + GL +G    P  F L     + ++ K  R N
Sbjct: 413 PERGLRQGDPLSPYLFILCTEVLIANIRKAERQN 446


>ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
            vesca subsp. vesca]
          Length = 1152

 Score =  192 bits (489), Expect = 1e-46
 Identities = 94/222 (42%), Positives = 139/222 (62%)
 Frame = +1

Query: 184  GFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADD 363
            G + P RG+RQGD ISPYLFL+ +E  S +I+QA+ N  I G+++   AP I+H++FADD
Sbjct: 383  GKLIPTRGLRQGDAISPYLFLLCAEVLSRMIKQAETNGEIQGVKVCTDAPSISHLYFADD 442

Query: 364  ALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKE 543
            + +F  A          +   Y   SGQ+INY+KSSV FS N     +  +  VL   + 
Sbjct: 443  SFIFSRAEERDMLCMKDIFVTYETMSGQQINYEKSSVSFSRNVPLWKQHDLAAVLGVQRV 502

Query: 544  QRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYV 723
            +   K+LGLP  +  SK E F+Y +D  +KR   W+   LS  GKEVL+K+VI ++P YV
Sbjct: 503  ENHEKYLGLPTELSYSKDEAFRYLIDRVRKRTQGWRDKTLSGVGKEVLLKAVIQSIPTYV 562

Query: 724  MS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMC 849
            MS ++LP  + NE++++++RFWWG   D   K+HW++W K+C
Sbjct: 563  MSCFELPRHLCNEMHQLMARFWWGEFGD-ERKIHWIAWDKLC 603



 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 40/83 (48%), Positives = 53/83 (63%)
 Frame = +2

Query: 2   RKGSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEA 181
           R G     A+KLDM+KAYDRVEW F++ VL K+GF   FV WI+ CI++ S++FLV+GE 
Sbjct: 322 RSGKVGLCALKLDMSKAYDRVEWCFLEKVLGKLGFGDTFVRWIMHCITTVSYSFLVNGEP 381

Query: 182 RGLCVQQEGLDKGIQYPPIFFSL 250
            G  +   GL +G    P  F L
Sbjct: 382 CGKLIPTRGLRQGDAISPYLFLL 404


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 653

 Score =  192 bits (489), Expect = 1e-46
 Identities = 93/223 (41%), Positives = 140/223 (62%)
 Frame = +1

Query: 184 GFVCPARGIRQGDPISPYLFLIISEAFSNLIEQAKKNKLISGLRISKTAPVINHIFFADD 363
           G + P RG+RQGDP+SPYLF++ +E  S LI+QA++N ++ G+++ K AP ++H+ FADD
Sbjct: 217 GPIYPGRGLRQGDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADD 276

Query: 364 ALLFCEANSVQAFNFISLLDNYCEASGQKINYDKSSVFFSVNTSEDLRRTICGVLNGMKE 543
           + LF  AN  +      +LD Y  AS Q IN  KS ++FS N     + T+  +L   + 
Sbjct: 277 SFLFFRANENETRALKDILDTYANASDQLINMQKSEIYFSRNVPVTKKNTLSNMLWVSEG 336

Query: 544 QRKIKHLGLPLTIGRSKKEVFQYAVDVAKKRVLNWKANFLSLAGKEVLIKSVISALPNYV 723
               K+LGLP  IGRSKK +F Y  D    R+    +  LS AGKEVLIKSV  A+P+Y 
Sbjct: 337 IGIRKYLGLPSMIGRSKKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQAIPSYC 396

Query: 724 MS*YKLPCGIYNELYKVISRFWWGNRDDGSSKMHWVSWGKMCL 852
           MS + LP  I +++ K+++ FWWG +++G   + W+SW ++ +
Sbjct: 397 MSVFLLPHSIADDIEKMLNSFWWGMKNEGRGGIRWMSWERLTM 439



 Score = 63.2 bits (152), Expect = 1e-07
 Identities = 29/81 (35%), Positives = 48/81 (59%)
 Frame = +2

Query: 8   GSKQFMAIKLDMAKAYDRVEWNFVKVVLNKMGFSPIFVSWILACISSSSFAFLVSGEARG 187
           G K   A+K+D++K YDRV+WN++  ++ KMGF+PI++ W+   ++  S+  LV+ +  G
Sbjct: 158 GIKGEAALKIDISKTYDRVDWNYLFSIMEKMGFNPIWIKWMRMSVTMVSYHVLVNDDRVG 217

Query: 188 LCVQQEGLDKGIQYPPIFFSL 250
                 GL +G    P  F L
Sbjct: 218 PIYPGRGLRQGDPLSPYLFIL 238