BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00023301
         (2657 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1357   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1356   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1355   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1353   0.0  
gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1351   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1351   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1348   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1333   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1331   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1320   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1312   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1310   0.0  
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]      1291   0.0  
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...  1280   0.0  
gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlise...  1279   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1266   0.0  
ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1259   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1259   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1245   0.0  
gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [L...  1242   0.0  

>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1357 bits (3512), Expect = 0.0
 Identities = 659/885 (74%), Positives = 750/885 (84%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLK S+TPPDSYP Y+ID E + R  DYEKV PHAFVHFA   SA  AL AAG  ELIL 
Sbjct: 44   RLKISATPPDSYPTYDIDAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILG 103

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDFLVD
Sbjct: 104  KKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVD 163

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            PFNG CK+ FTKDTAFSF+GE + A+IKCNF+IEFL REI EIK  +DF SL++L QLAS
Sbjct: 164  PFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLAS 223

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   K
Sbjct: 224  SPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEK 283

Query: 721  ALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHK 900
            A+ Y   RRVP++    R  L V+DEPDFG+ M DPFFC Q  EGISFKV+FLVNAV+HK
Sbjct: 284  AMAYFSFRRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHK 342

Query: 901  GIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLLE 1080
            GI+NQHQM+ +FF LLRSR EEVN  ALKHM SYK PV DA + L  +QKWLL NPKLLE
Sbjct: 343  GIVNQHQMTNEFFYLLRSRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLE 402

Query: 1081 RPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNK 1260
            R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+
Sbjct: 403  RTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNR 462

Query: 1261 NVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAW 1440
            NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAW
Sbjct: 463  NVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAW 522

Query: 1441 FFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERN 1620
            FFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERN 582

Query: 1621 GYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRT 1800
            GYVFSDGIGM+S  LA+EVAEKL ++ +PP AYQIRYAGYKGV+A WP   DG  L LR 
Sbjct: 583  GYVFSDGIGMISADLAIEVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRP 642

Query: 1801 SMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLED 1980
            SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVD 702

Query: 1981 TDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPS 2160
            +D+AFDV+T SC + G+TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPS
Sbjct: 703  SDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 2161 GRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPC 2340
            GRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG +FS+ +K LQVVKGLV IAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPC 822

Query: 2341 LHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 2520
            LHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS
Sbjct: 823  LHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 2521 KRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            K+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNA
Sbjct: 883  KKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNA 927


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1356 bits (3509), Expect = 0.0
 Identities = 658/885 (74%), Positives = 751/885 (84%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLK SSTPPDSYP Y+ID E +QR ++YEKV PHAFVHFA   SA  AL AAG  ELIL 
Sbjct: 44   RLKISSTPPDSYPTYDIDAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILG 103

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDFLVD
Sbjct: 104  KKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVD 163

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            PFNG CK+ FTKDTAFSF+GE + A+IKCNF+IEFL REI EIK  +DF SL++L QLAS
Sbjct: 164  PFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLAS 223

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   K
Sbjct: 224  SPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEK 283

Query: 721  ALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHK 900
            A+ Y   RRVP++    R  L V+DEPDFG+ M DPFFC Q  EGISF+VLFLVNAV+HK
Sbjct: 284  AMAYFSFRRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHK 342

Query: 901  GIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLLE 1080
            GI+NQHQM+ +FF LLRS  EEVN+ ALKHM SYK PV DA + L  +QKWLL NPKLL+
Sbjct: 343  GIVNQHQMANEFFYLLRSHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLD 402

Query: 1081 RPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNK 1260
            R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+
Sbjct: 403  RTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNR 462

Query: 1261 NVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAW 1440
            NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAW
Sbjct: 463  NVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAW 522

Query: 1441 FFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERN 1620
            FFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERN 582

Query: 1621 GYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRT 1800
            GYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR 
Sbjct: 583  GYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRP 642

Query: 1801 SMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLED 1980
            SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVD 702

Query: 1981 TDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPS 2160
            +D+AFDV+T SC + G+TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPS
Sbjct: 703  SDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 2161 GRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPC 2340
            GRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG +FS+ +K LQVVKGLV IAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPC 822

Query: 2341 LHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 2520
            LHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS
Sbjct: 823  LHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 2521 KRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            K+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNA
Sbjct: 883  KKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNA 927


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1355 bits (3508), Expect = 0.0
 Identities = 657/885 (74%), Positives = 750/885 (84%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLK SSTPPDSYP +++D E +QR  DYEKV PHAFVHFA   SA  AL AAG  ELIL 
Sbjct: 44   RLKISSTPPDSYPTFDVDAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILG 103

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             KPL VSLGPENP+ LN++RRTT+P+K SDV +E+GV+ S+++FVVGWRGPRTGVDFLVD
Sbjct: 104  KKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVD 163

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            PFNG CK+ FTKDTAFSF+GE + A+IKCNF+IEFL REI EIK  +DF SL++LLQLAS
Sbjct: 164  PFNGACKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLAS 223

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   K
Sbjct: 224  SPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEK 283

Query: 721  ALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHK 900
            A+ Y    RVP++    R  L V+DEPDFG+ M DPFFC Q  EGISFKV+FLVNAV+HK
Sbjct: 284  AMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHK 342

Query: 901  GIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLLE 1080
            GI+NQHQM+ +FF LLRS  EEVN  ALKHM SYK PV DA + L  ++KWLL NPKLLE
Sbjct: 343  GIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLE 402

Query: 1081 RPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNK 1260
            R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+
Sbjct: 403  RTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNR 462

Query: 1261 NVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAW 1440
            NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAW
Sbjct: 463  NVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAW 522

Query: 1441 FFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERN 1620
            FFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERN 582

Query: 1621 GYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRT 1800
            GYVFSDGIGM+S  LAVEVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR 
Sbjct: 583  GYVFSDGIGMISADLAVEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRP 642

Query: 1801 SMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLED 1980
            SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVD 702

Query: 1981 TDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPS 2160
            +D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPS
Sbjct: 703  SDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 2161 GRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPC 2340
            GRWLMGCLDELG LE GQCFIQVS PSLE  F+KHG +FS+ +K LQVVKGLV IAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPC 822

Query: 2341 LHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 2520
            LHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS
Sbjct: 823  LHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 2521 KRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            K+SWIPM+Y   E +++ R V H DII+FF+KNMV ESLG ICNA
Sbjct: 883  KKSWIPMNYEPAEVKQMGRQVNHMDIIDFFSKNMVQESLGEICNA 927


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1353 bits (3503), Expect = 0.0
 Identities = 657/885 (74%), Positives = 750/885 (84%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLK SSTPPDSYP Y+ID E +QR ++YEKV PHAFVHFA   SA  AL AAG  ELIL 
Sbjct: 44   RLKISSTPPDSYPTYDIDAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILG 103

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDF VD
Sbjct: 104  KKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVD 163

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            PFNG CK+ FTKDTAFSF+GE + A+IKCNF+IEF+ REI EIK  +DF SL++LLQLAS
Sbjct: 164  PFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLAS 223

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   K
Sbjct: 224  SPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEK 283

Query: 721  ALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHK 900
            A+ Y    RVP++    R  L V+DEPDFG+ M DPFFC Q  EGISFKV+FLVNAV+HK
Sbjct: 284  AMAYFSFHRVPMVEMCNRKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHK 342

Query: 901  GIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLLE 1080
            GI+NQHQM+ +FF LLRSR EEVN+ ALKHM SYK PV DA + L  +QKWLL NPKLL+
Sbjct: 343  GIVNQHQMTNEFFYLLRSRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLD 402

Query: 1081 RPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNK 1260
            R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+
Sbjct: 403  RTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNR 462

Query: 1261 NVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAW 1440
            NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAW
Sbjct: 463  NVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAW 522

Query: 1441 FFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERN 1620
            FFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS +VNS+LPDIERN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERN 582

Query: 1621 GYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRT 1800
            GYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR 
Sbjct: 583  GYVFSDGIGMISADLAIEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRP 642

Query: 1801 SMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLED 1980
            SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S LD+ML D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVD 702

Query: 1981 TDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPS 2160
            +D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPS
Sbjct: 703  SDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 2161 GRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPC 2340
            GRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG +FS+ ++ LQVVKGLV IAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPC 822

Query: 2341 LHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 2520
            LHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS
Sbjct: 823  LHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 2521 KRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            K+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNA
Sbjct: 883  KKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNA 927


>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1351 bits (3497), Expect = 0.0
 Identities = 656/885 (74%), Positives = 747/885 (84%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLK SSTPPDSYP Y+ID E +QR ++YEKV PHAFVHFA   SA  AL AAG  EL+L 
Sbjct: 44   RLKISSTPPDSYPTYDIDAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLG 103

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+ +FVVGWRGPRTGVDFLVD
Sbjct: 104  KKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVD 163

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            PFNG CK+ FTKDT FSF+GE + A+IKCNF+IEFL REI EIK  +DF SL++LLQLAS
Sbjct: 164  PFNGTCKILFTKDTVFSFRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLAS 223

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   K
Sbjct: 224  SPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEK 283

Query: 721  ALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHK 900
            A+ Y    RVP++    R  L V+DEPDFG+ M DPFFC Q  EGISFKVLFL NAV+HK
Sbjct: 284  AMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHK 342

Query: 901  GIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLLE 1080
            GI+NQHQM  +FF LLRS  EEVN  ALKHM SYK PV DA + L  +QKWLL NPKLLE
Sbjct: 343  GIVNQHQMINEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLE 402

Query: 1081 RPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNK 1260
            R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+
Sbjct: 403  RTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNR 462

Query: 1261 NVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAW 1440
            NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAW
Sbjct: 463  NVLTYYAATIVREITSNSNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAW 522

Query: 1441 FFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERN 1620
            FFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERN 582

Query: 1621 GYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRT 1800
            GYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR 
Sbjct: 583  GYVFSDGIGMISADLAIEVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRP 642

Query: 1801 SMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLED 1980
            SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M++ LD+ML D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVD 702

Query: 1981 TDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPS 2160
            +D+AFDV+T SC + G+TAA+MLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPS
Sbjct: 703  SDVAFDVITASCAEAGNTAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 2161 GRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPC 2340
            GRWLMGCLDELG LE GQCFIQVS PSLE  FVKHGS+FS+ +K LQVVKGLV IAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPC 822

Query: 2341 LHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 2520
            LHPGDVRILEAVD P L HL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDEN+IPPS
Sbjct: 823  LHPGDVRILEAVDVPSLSHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPS 882

Query: 2521 KRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            K+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNA
Sbjct: 883  KKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNA 927


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1351 bits (3497), Expect = 0.0
 Identities = 656/886 (74%), Positives = 760/886 (85%), Gaps = 1/886 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTSSTPP+SYP++EI DT  I+R +DY+KVEPHAFVHF    +AT ALDAAG+ EL L
Sbjct: 44   RLKTSSTPPESYPDFEIIDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFL 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
             GKPLKVSLGPE P HLN++RRTT P+K  DV +E+G++ SR+E+  GWRGP +GVDFLV
Sbjct: 104  HGKPLKVSLGPETPFHLNQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+G CK  FTKDTAFSFKG  K AVIKCNF++EFL REI E++  RD  SLI+LLQL+
Sbjct: 164  DPFDGTCKFLFTKDTAFSFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLS 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            SSP +YYRTADDDI+E+VPFDLLDDDDPWIRTTDFT SGAIGRCN+YRIS+ PRYG  L 
Sbjct: 224  SSPFVYYRTADDDIEETVPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLK 283

Query: 718  KALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMH 897
            KA++YLR RRV V+ +SP+ +L V+DEPDFG+PM DPFFCIQ+KEGI F+V+FLVNAVMH
Sbjct: 284  KAMDYLRARRVNVLEDSPKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMH 343

Query: 898  KGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLL 1077
            KGIINQHQ+S+KFFDLLRS+ +++N  ALKH+CSY+HPV+DA++ L+LV KWLL NPKLL
Sbjct: 344  KGIINQHQLSDKFFDLLRSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLL 403

Query: 1078 ERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLN 1257
            + P+E++DIVEVRRL+ITP+KAYCLPPEVELSNRVLRNY+ ++DRFLRVTFMDE M T+N
Sbjct: 404  KSPKELDDIVEVRRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTIN 463

Query: 1258 KNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSA 1437
             NVL YYV P+ + ITSNS PQ+T +FKRVK IL +GFYLCGRKYSFLAFSSNQLRDRSA
Sbjct: 464  ANVLNYYVAPIVKVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSA 523

Query: 1438 WFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIER 1617
            WFFAEDK T V  IK+WMGKFTNRN+AKCAARMGQCFSSTYATVEVPS +V  +LPDI+R
Sbjct: 524  WFFAEDKKTSVRAIKSWMGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEV-KELPDIKR 582

Query: 1618 NGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLR 1797
            NGY FSDGIG +   LA+EVAEKL++    P AYQIRYAG KGV+A WP+  DG  L  R
Sbjct: 583  NGYDFSDGIGKIVPDLAMEVAEKLKLE-GTPSAYQIRYAGCKGVVACWPSDNDGIRLSWR 641

Query: 1798 TSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLE 1977
             SM KF S+HTILEICSWTRFQPGFLNRQIVTLLSAL V D IFW+MQE+M+S+L++ML 
Sbjct: 642  PSMNKFLSDHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLT 701

Query: 1978 DTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVP 2157
            DTD+AFDV+  SC +QG+TAAIMLSAGFKPQTEPHL+GMLT IRAAQ   LREKARIFVP
Sbjct: 702  DTDVAFDVLIASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVP 761

Query: 2158 SGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNP 2337
            SGRWLMGCLDELGVLE GQCFIQVS PSLE  F+KHGSRFS  +K L+V+KG+VAIAKNP
Sbjct: 762  SGRWLMGCLDELGVLEQGQCFIQVSSPSLENCFLKHGSRFSA-QKNLKVIKGIVAIAKNP 820

Query: 2338 CLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 2517
            CLHPGDVRILEAVDAP L HL DCLVFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPP
Sbjct: 821  CLHPGDVRILEAVDAPGLEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPP 880

Query: 2518 SKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            SK+SW PM Y + EA+ L R+V   DII+FFTKNMVNE+LG ICNA
Sbjct: 881  SKQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNA 926


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1348 bits (3488), Expect = 0.0
 Identities = 654/885 (73%), Positives = 747/885 (84%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLK S+TPPDSYP Y++D   + R  DYEKV PHAFVHFA   SA  AL AAG   LIL 
Sbjct: 44   RLKISATPPDSYPTYDVDAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILG 103

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             KPL VSLGPENP+ LN++RRTT+P+K SDV VE+GV+ S+++FVVGWRGPRTGVDF VD
Sbjct: 104  KKPLIVSLGPENPYRLNQRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVD 163

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            PFNG CK+ FTKDTAFSF+GE K A+IKCNF+IEF+ REI EIK ++DF SL++LLQLAS
Sbjct: 164  PFNGACKILFTKDTAFSFRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLAS 223

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGRCNTYRIS+RPR GP   K
Sbjct: 224  SPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEK 283

Query: 721  ALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHK 900
            A+ Y    RVP++    R  L V+DEPDFG+ M DPFFC Q  EGISFKV+FLVNAV+HK
Sbjct: 284  AMAYFSFHRVPMVEMCNRKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHK 342

Query: 901  GIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLLE 1080
            GI+NQHQM+ +FF LLRS  EEVN  ALKHM SYK PV DA + L  +QKWLL NPKLLE
Sbjct: 343  GIVNQHQMTNEFFYLLRSHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLE 402

Query: 1081 RPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNK 1260
            R  E++DIVEVRRL+ITP KAYCLPP VELSNRVLRNY+++ADRFLRVTFMDE M  LN+
Sbjct: 403  RTGELDDIVEVRRLVITPTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNR 462

Query: 1261 NVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAW 1440
            NVLTYY   + R ITSNSNPQRT +F+RVK IL+ GF+LCGRKYSFLAFS+NQLRDRSAW
Sbjct: 463  NVLTYYAATIVREITSNSNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAW 522

Query: 1441 FFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERN 1620
            FFAED    V  I +WMG+F+NRN+AKCAARMGQCFSSTYATVEVPS++VNS+LPDIERN
Sbjct: 523  FFAEDPKIRVPGIISWMGRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERN 582

Query: 1621 GYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRT 1800
            GYVFSDGIGM+S  LA+EVAEKL +S +PP AYQIRYAG KGV+A WP   DG  L LR 
Sbjct: 583  GYVFSDGIGMISADLALEVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRP 642

Query: 1801 SMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLED 1980
            SM+KF+SNHTILEICSWTRFQPGFLNRQIVTLLS+L+V+DGIFW MQ+ M+S L++ML D
Sbjct: 643  SMKKFDSNHTILEICSWTRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVD 702

Query: 1981 TDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPS 2160
            +D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML+SIRA+QLGDLR KARIFVPS
Sbjct: 703  SDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPS 762

Query: 2161 GRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPC 2340
            GRWLMGCLDELG LE GQCFIQVS PSLE  F+KHG +FS+ +K LQVVKGLV IAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPC 822

Query: 2341 LHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 2520
            LHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS
Sbjct: 823  LHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 2521 KRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            K+SWIPM+Y   E ++L R V H DII+FF+KNMV ESLG ICNA
Sbjct: 883  KKSWIPMNYEPAEVKQLGRQVNHMDIIDFFSKNMVQESLGEICNA 927


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1333 bits (3449), Expect = 0.0
 Identities = 643/886 (72%), Positives = 741/886 (83%), Gaps = 1/886 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTS TPP+SYPN+EI DT  IQR D Y +VEPHAFVHFA   SAT A +AAG  EL  
Sbjct: 44   RLKTSWTPPESYPNFEITDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFF 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
             G+P+KVSLGPENP HLN++RRTTIP+KLSDV VE+G + SR+EF+VGWRGP +GVDFLV
Sbjct: 104  NGRPVKVSLGPENPFHLNQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+G+CK  FT+DTAFSFKG  + AVI+C+F++EFL R+I EIK Y D   L++LLQLA
Sbjct: 164  DPFDGKCKFCFTRDTAFSFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLA 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            S+P ++YRTADDDI+  VPFDLLDDDDPWIRTTDFTPSGAIGRCN+YR+S+ PR+G  L 
Sbjct: 224  SAPSVWYRTADDDIEVLVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLK 283

Query: 718  KALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMH 897
            +AL +LR+RRV    +  R  L V  EP++ MPM DPFFCI ++EG+ F ++FLVNAVMH
Sbjct: 284  RALNFLRERRVQE--DCLRRPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMH 341

Query: 898  KGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLL 1077
            KGI NQHQ+S+ FFDLLR++P +VN  AL+H+CSYKHPV+DA K L+ VQ+WLL NPKL 
Sbjct: 342  KGIFNQHQLSDSFFDLLRNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLF 401

Query: 1078 ERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLN 1257
               ++++DIVE+RRL ITP +AYCLPPEVELSNRVLR Y++IAD+FLRVTFMDE + T+N
Sbjct: 402  RSSKQLDDIVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMN 461

Query: 1258 KNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSA 1437
             N LTYY  P+ R ITSNS  Q+T +FKRVK IL +GFYLCGRKYSFLAFSSNQLRDRSA
Sbjct: 462  ANTLTYYCAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSA 521

Query: 1438 WFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIER 1617
            WFFAED  T V+ I+NWMGKFTNRNIAKCAARMGQCFSSTYATVEVPS +    LPDIER
Sbjct: 522  WFFAEDGKTSVSKIRNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIER 581

Query: 1618 NGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLR 1797
            N Y+FSDGIGM++  LA EVAEKL++  +PPCAYQIRYAG KGV+A WP   DG  L LR
Sbjct: 582  NNYIFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLR 641

Query: 1798 TSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLE 1977
             SM KF SNHT LEICSWTRFQPGFLNRQI+TLLS L+V D IFW+MQ  MVS+L++M  
Sbjct: 642  VSMNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFM 701

Query: 1978 DTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVP 2157
            D D+AFDVVT SC +QG+TAAIMLSAGF P+TEPHL GMLT IRAAQL  LREK RIFVP
Sbjct: 702  DADVAFDVVTASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVP 761

Query: 2158 SGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNP 2337
            SGRWLMGCLDELGVLEHGQCFIQVS PSLE  F KHGSRFSE++KKLQVVKG V +AKNP
Sbjct: 762  SGRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNP 821

Query: 2338 CLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 2517
            CLHPGD+RILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP
Sbjct: 822  CLHPGDIRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 881

Query: 2518 SKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            SKRSW+PM Y A EA++L R V H DII+FF KNMVNE+LG ICNA
Sbjct: 882  SKRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNA 927


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1331 bits (3444), Expect = 0.0
 Identities = 644/885 (72%), Positives = 744/885 (84%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLKTSSTPPDSYP Y+ID E+++R ++Y KVEPHAFVHFA   SA +AL AA R EL L 
Sbjct: 44   RLKTSSTPPDSYPTYDIDVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLE 103

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             KPLKVSLGPENP ++N++RRT +P+K SDV VE+GV+ S ++FVVGWRGP +GV+FLVD
Sbjct: 104  EKPLKVSLGPENPFNMNKRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVD 163

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            PFNG CK+ FT+DTAF FKGE K AVIKCNF+IEFL REI EI   +DF SL++LLQL S
Sbjct: 164  PFNGTCKILFTRDTAFCFKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTS 223

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGR NTYRIS+RPR GP L K
Sbjct: 224  SPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKK 283

Query: 721  ALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHK 900
            A+ Y R+ RVPV+ +  R  L V+DEPDFG+ + +PFFC Q  EGISFKVLFLVNAV+ K
Sbjct: 284  AMNYFRESRVPVVEQGNRQMLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQK 343

Query: 901  GIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLLE 1080
            GI+NQHQM+ +FF LLR   E VN  ALKH+ SYK PV DA + L  VQKWL  NP LLE
Sbjct: 344  GIVNQHQMTAEFFSLLRKHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLE 403

Query: 1081 RPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNK 1260
            R  +++D+VEVRRL+ITP KAYCLPP VELSNRVLR Y++++DRFLRVTFMDE M  LN+
Sbjct: 404  RTGQLDDVVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNR 463

Query: 1261 NVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAW 1440
            NVLTYY   + R ITS+SNPQRT +F+RVK IL+ GFYLCGR+YSFLAFS+NQLRDRSAW
Sbjct: 464  NVLTYYAATIVREITSSSNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAW 523

Query: 1441 FFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERN 1620
            FFAE     V NI NWMGKF NRN+AKCAARMGQCFSSTYATVEV  ++VNS+LPDIERN
Sbjct: 524  FFAEAPEIRVPNIINWMGKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERN 583

Query: 1621 GYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRT 1800
            GYVFSDGIGMMS  L++EVA KLQ+S +PPCAYQIRYAG KGV+A WP  KDG  L LR 
Sbjct: 584  GYVFSDGIGMMSADLSIEVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRP 643

Query: 1801 SMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLED 1980
            SM+KF+SNHTILEICSWTR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+LD++L D
Sbjct: 644  SMKKFDSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVD 703

Query: 1981 TDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPS 2160
            +D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR K R+FVPS
Sbjct: 704  SDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPS 763

Query: 2161 GRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPC 2340
            GRWLMGCLDEL  LE GQCFIQVS PSLE  FVKHG +FSE +K LQV+KGLV IAKNPC
Sbjct: 764  GRWLMGCLDELRKLEQGQCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPC 823

Query: 2341 LHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 2520
            LHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS
Sbjct: 824  LHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 883

Query: 2521 KRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            K+SW+PMDYA  EA++L R V+H+DII+FF+KNMV ESLG ICNA
Sbjct: 884  KKSWMPMDYAPAEAKQLGRQVQHTDIIDFFSKNMVQESLGEICNA 928


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1320 bits (3415), Expect = 0.0
 Identities = 643/885 (72%), Positives = 739/885 (83%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLKTSSTPPDSYP Y+ID E ++R ++Y KVEPHAFVHFA   SA +AL AA R EL L 
Sbjct: 44   RLKTSSTPPDSYPTYDIDVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLE 103

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             KPLKVSLGPEN  ++NE+RRT +PYK SDV VE+GV+ S ++FVVGWRGP +GV+FLVD
Sbjct: 104  EKPLKVSLGPENTFNMNERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVD 163

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            PFNG+CK+ FT+DTAF FKGE K AVIKCNF+IEFL REI EI   +DF SL++LLQLAS
Sbjct: 164  PFNGKCKILFTRDTAFCFKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLAS 223

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SPL++YRTADDDI+ESV FDLLDDDD WIRTTD T SGAIGR NTYR+S+RPR GP   K
Sbjct: 224  SPLVFYRTADDDIEESVAFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKK 283

Query: 721  ALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHK 900
            A+ Y R+ RVPV+ E     L V++EPDFG  + +PFFC Q  EGISFKVLFLVNAV+HK
Sbjct: 284  AMNYFRESRVPVV-EQGEQMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHK 342

Query: 901  GIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLLE 1080
            GI+NQHQM+ +FF LLR   E VN  ALKH+ SYK PV DA + L  VQKWL NNP LLE
Sbjct: 343  GIVNQHQMTAEFFSLLRKHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLE 402

Query: 1081 RPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNK 1260
            R  +++D+VEVRRL+ITP KAYCLPP VELSNRVLR Y++I+DRFLRVTFMDE M  LN+
Sbjct: 403  RTGQLDDVVEVRRLVITPTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNR 462

Query: 1261 NVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAW 1440
            N LTYY   + R ITS+SNPQRT +F+RVK I+N GFYLCGR+YSFLAFS+NQLRDRSAW
Sbjct: 463  NALTYYAANIVREITSSSNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAW 522

Query: 1441 FFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERN 1620
            FFAE     V +I NWMGKF NRN+AKCAARMGQCFSSTYATVEV  ++VNS+LPDIERN
Sbjct: 523  FFAETPEIRVTSIINWMGKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERN 582

Query: 1621 GYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLRT 1800
            GYVFSDGIGMM+  L++EVA KLQ+S +PPCAYQIRYAG KGV+A WP  KDG  L LR 
Sbjct: 583  GYVFSDGIGMMTADLSIEVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRP 642

Query: 1801 SMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLED 1980
            SM+KF+SNHTILEICSWTR QPGFLNRQI+TLLS+LEV+D +FW MQ+ M+S+LD++L D
Sbjct: 643  SMKKFDSNHTILEICSWTRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVD 702

Query: 1981 TDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVPS 2160
            +D+AFDV+T SC + G+TAAIMLSAGFKPQ+EPHLRGML SIRAAQLGDLR K R+FV S
Sbjct: 703  SDVAFDVITASCAEAGNTAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTS 762

Query: 2161 GRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNPC 2340
            GRWLMGCLDELG LE GQCFIQVS PSLE  FVKHG  FSE +K LQVVKGLV IAKNPC
Sbjct: 763  GRWLMGCLDELGELEQGQCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPC 822

Query: 2341 LHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPS 2520
            LHPGDVRILEAVD P LHHL+DCLVFPQKGDRPH+NEASGSDLDGDLYFVTWDENLIPPS
Sbjct: 823  LHPGDVRILEAVDVPGLHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPS 882

Query: 2521 KRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            K+SW+PM YA  EA++L R V+H+DII+FF KNMV ESLG ICNA
Sbjct: 883  KKSWMPMAYAPAEAKQLGRQVQHTDIIDFFLKNMVQESLGEICNA 927


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1312 bits (3396), Expect = 0.0
 Identities = 630/886 (71%), Positives = 735/886 (82%), Gaps = 1/886 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTS TPP+SYPN+EI D   I R +DY +VEPHAFVHFA+  SAT A+DAA R EL L
Sbjct: 44   RLKTSWTPPESYPNFEITDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFL 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
              K LK SLGPENP  LN++RR T P+KLS V VE+G + SR+EF VGWRGP TGVDFLV
Sbjct: 104  NNKGLKASLGPENPFTLNQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+G C+  F+++TAFSFK   + AVIKC+F++EFL R+I EIK Y +   L++LLQLA
Sbjct: 164  DPFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLA 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            S+P ++YRTADDDI+ SVPFDLLDDDDPWIRTTDFT SGAIGRC++YR+S+ PR+GP L 
Sbjct: 224  SAPRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLR 283

Query: 718  KALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMH 897
            KA+++L++RRV   Y   R  + ++DEPDFGMPM DPFFCI +KEGI+F VLFLVNAVMH
Sbjct: 284  KAVDFLKERRVQEEYL--RRPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMH 341

Query: 898  KGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLL 1077
            KGI NQHQ+S  FFDLLR++P EVN  ALKH+  Y+ PV+DA+K L++ Q+WLL NPK  
Sbjct: 342  KGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFF 401

Query: 1078 ERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLN 1257
            +  ++++DI E+RRL+ITP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE + T+N
Sbjct: 402  KNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMN 461

Query: 1258 KNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSA 1437
             N L Y+  P+ R ITS S PQ+T +FKRV+ IL  GFYLCGR+YSFLAFSSNQLRDRSA
Sbjct: 462  SNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSA 521

Query: 1438 WFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIER 1617
            WFFAED+N  V  IK+WMGKFTN+NIAKCAARMGQCFSSTYAT+EVP  +VNS LPDI+R
Sbjct: 522  WFFAEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKR 581

Query: 1618 NGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLR 1797
            NGY FSDGIGM++  LA EVAEKL+   DPPCAYQIRYAG KGV+A WP   DG  L LR
Sbjct: 582  NGYDFSDGIGMITPDLAREVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLR 641

Query: 1798 TSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLE 1977
            +SM KF+SNHTILEICSWTRFQPGFLNRQI+TLLSAL V D +FW+MQE MVS+L++ML 
Sbjct: 642  SSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLV 701

Query: 1978 DTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVP 2157
            D+D+AFDV+T SC +QG+ AAIMLSAGFKPQ EPHLRGMLT +RAAQL  LREKARIFVP
Sbjct: 702  DSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVP 761

Query: 2158 SGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNP 2337
            SGRWLMGCLDELGVLE GQCFIQVS   LE  FVKHGS+FSE +K LQVVKG V IAKNP
Sbjct: 762  SGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNP 821

Query: 2338 CLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 2517
            CLHPGD+RILEAVDAP LHHL+DCLVFPQKG+RPH NEASGSDLDGDLYFVTWDENLIPP
Sbjct: 822  CLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPP 881

Query: 2518 SKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            SKRSWIPM Y A EA++L R V H DI+EFF KNM NE+LG ICNA
Sbjct: 882  SKRSWIPMQYDAAEAKQLTRPVNHQDIVEFFAKNMANENLGAICNA 927


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1310 bits (3390), Expect = 0.0
 Identities = 624/887 (70%), Positives = 743/887 (83%), Gaps = 2/887 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTS TPP+SYPN+EI D   I+R +DY +V PHAFVHFA+  SAT A++A+GR EL L
Sbjct: 44   RLKTSWTPPESYPNFEITDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFL 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
              K LKVSLGP+NP  LN++RRTT P+KLSDV  E+G + SR+EF VGWRGP +GVDFLV
Sbjct: 104  NNKALKVSLGPKNPFTLNQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+G CK  F+++TAFS K   + AVIKC+F++EFL R+I EI  Y +   L++LLQLA
Sbjct: 164  DPFDGTCKFCFSRNTAFSLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLA 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            S+P ++YRTADDDI+  VPFDLLDDDDPWIRTTDFT SGAIGRC++YR+S+ PR+G  L 
Sbjct: 224  SAPWVWYRTADDDIEAWVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLR 283

Query: 718  KALEYLRKRRVPVIYE-SPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVM 894
            KA++YL++RRV V+ E + R R+ + DEPDFGMPM DPFFCI +KEGI+F+VLFLVNAVM
Sbjct: 284  KAVKYLKERRVQVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVM 343

Query: 895  HKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKL 1074
            HKGI NQHQ+S  FFDLLR++  EVN  ALKH+C+Y+ PV++A++ L+ VQ+WLL NP L
Sbjct: 344  HKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNL 403

Query: 1075 LERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTL 1254
             + P+++ D+VE+RRL+ITP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE +  +
Sbjct: 404  FKNPKQLGDVVEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRM 463

Query: 1255 NKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRS 1434
            N NVL YYV P+ R ITSNS PQ+T +FKRV+ IL  GFYLCGR+YSFLAFS+NQLRD+S
Sbjct: 464  NSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQS 523

Query: 1435 AWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIE 1614
            AWFF+E++N  V ++K+WMGKFTNRNIAKCAARMGQCFSSTYAT+EVP  +VNS LPDIE
Sbjct: 524  AWFFSEERNISVLDVKSWMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIE 583

Query: 1615 RNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHL 1794
            RNGYVFSDGIG+++  LA EVAEKL++  DPPCAYQIRYAG KGV+A WP   DG  L L
Sbjct: 584  RNGYVFSDGIGIITPDLAREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSL 643

Query: 1795 RTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRML 1974
            R SM KF+SNHT LEICSWTRFQPGFLNRQI+TLLS L V D +FW+MQETMVS+L++M 
Sbjct: 644  RPSMNKFQSNHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMF 703

Query: 1975 EDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFV 2154
             ++D+AFDV+T SC DQG+ AAIMLSAGFKP  EPHLRGMLT +RAAQL DLREK RIFV
Sbjct: 704  VNSDVAFDVLTASCADQGNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFV 763

Query: 2155 PSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKN 2334
            PSGRWLMGCLDELG+LE GQCFIQVS  SLE+ F+KHG++FSE EK LQV+KG V IAKN
Sbjct: 764  PSGRWLMGCLDELGMLEQGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKN 823

Query: 2335 PCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 2514
            PCLHPGDVR+LEAVD P LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTWDENLIP
Sbjct: 824  PCLHPGDVRVLEAVDVPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIP 883

Query: 2515 PSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            PSKRSWIPM Y A EA+ L R V H DIIEFF KNMVN++LG ICNA
Sbjct: 884  PSKRSWIPMQYDAAEAKLLARPVNHQDIIEFFAKNMVNDNLGAICNA 930


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score = 1291 bits (3340), Expect = 0.0
 Identities = 623/886 (70%), Positives = 732/886 (82%), Gaps = 1/886 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTS TPP+SYPN+EI D+  IQR DDY+KVEPHAFVHFA   +AT A+DAAGR EL+ 
Sbjct: 44   RLKTSWTPPESYPNFEILDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVF 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
              + LKVSLGPENP++LN +RR T P+KLSDV +++G M SR+EF VGWRGP  GVDFLV
Sbjct: 104  NNQLLKVSLGPENPYYLNRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+G CK  F++DTAFSFKG  + AVIKC+F++EFL R+I EIK Y +   L+V LQLA
Sbjct: 164  DPFDGTCKFCFSRDTAFSFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLA 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            SSP ++YRTADD+I+ESVPFDLLDDDD WIRTTDFTPSGAIGRCNTYR+ +RPR+G  L 
Sbjct: 224  SSPRVWYRTADDEIEESVPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLK 283

Query: 718  KALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMH 897
            KAL+YLR++RVP+ Y   R  L + DEPDFG  M DPF+CI YKEGI F+++FLVNAVMH
Sbjct: 284  KALDYLREQRVPMDYV--RWPLRISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMH 341

Query: 898  KGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLL 1077
            KGI NQHQ+SE FF+LLR +P EVN  ALKH+ SY+ PV+DA+K L+ V  WLL NP L 
Sbjct: 342  KGIFNQHQLSEDFFNLLRDQPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILF 401

Query: 1078 ERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLN 1257
            + P++++DIVE+RRL+ITP KA+CL PEVELSNRVLR Y+ +ADRFLRVTFMDE M T+N
Sbjct: 402  KSPKQLDDIVEIRRLVITPTKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTIN 461

Query: 1258 KNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSA 1437
             NVLTYY   + R +TS    Q+T +FKRV+ IL +GFYLCGRKYSFLAFS+NQLRD SA
Sbjct: 462  ANVLTYYAASIVRDVTSTFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSA 521

Query: 1438 WFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIER 1617
            WFFAED  T V  I  WMGKFTNRNIAKCAARMGQCFSSTYATVEVPST+VN  LPDIER
Sbjct: 522  WFFAEDGKTSVLQILRWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIER 581

Query: 1618 NGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLR 1797
            NGYVFSDGIG ++  LA EVA+KL++  +PPCAYQIRYAG KGV+A WP   DG  L LR
Sbjct: 582  NGYVFSDGIGKITPDLAKEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLR 641

Query: 1798 TSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLE 1977
             SM KF S+HT LEICSWTRFQPGFLNRQI+TLLS   V D +FW MQ TMVS+L+++L 
Sbjct: 642  CSMNKFFSDHTTLEICSWTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILV 701

Query: 1978 DTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVP 2157
            DTD+AF+V+T SC++QG+ AAIMLSAGFKPQTEPHLRG+LT +RA+QL  LREKARIFVP
Sbjct: 702  DTDVAFEVLTSSCSEQGNAAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVP 761

Query: 2158 SGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNP 2337
            SGRWLMG LDELGVLE GQCFIQVS PS+E  F+KHGSRF+E +K  +V++GLV IAKNP
Sbjct: 762  SGRWLMGVLDELGVLEQGQCFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNP 821

Query: 2338 CLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 2517
            CLHPGD+RILEAVDAP LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTW++ LIPP
Sbjct: 822  CLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPP 881

Query: 2518 SKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
             K+SW PM Y  GE +E+ R+V H DII+FF KNMVNE LGTICNA
Sbjct: 882  GKKSWPPMQYDPGETKEIQREVNHKDIIDFFAKNMVNEHLGTICNA 927


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1280 bits (3313), Expect = 0.0
 Identities = 619/887 (69%), Positives = 725/887 (81%), Gaps = 2/887 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLKTS TPP+S+PN+EI+T  ++R DDY +VEPHAFVHF    S T A+DAAGR EL   
Sbjct: 44   RLKTSWTPPESFPNFEINTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFN 103

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             +PLKVSLGPENP+ LN +RRT  P+KLSDV VE+G +  ++EF   WRGP  GVDF+VD
Sbjct: 104  NEPLKVSLGPENPYFLNRRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVD 163

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            PF+G CK  FT DTAFSFKG  K AVIKC+F++EFL REI EIK Y D   L++LL+L S
Sbjct: 164  PFDGTCKFCFTMDTAFSFKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTS 223

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SP + YRTADDDI +SVPFDLLDDDDPWIRTTDFTPSGAIGRCN+YR+ + PR+G  L K
Sbjct: 224  SPWVSYRTADDDIDQSVPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKK 283

Query: 721  ALEYLRKRRVP--VIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVM 894
            A+ YLR+RRV    I   P+    +QDEPDFGM   +PFF IQY+EGISF+++FLVNAVM
Sbjct: 284  AMNYLRERRVKEVCIKWPPK----IQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVM 339

Query: 895  HKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKL 1074
            HKG +NQHQ+S+ FF LLRS+P+E+N  ALKH+CSY+ PV+DA + L++VQ WLL NPKL
Sbjct: 340  HKGTVNQHQLSDSFFHLLRSQPKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKL 399

Query: 1075 LERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTL 1254
            ++ P+ ++DI EVRRL+ITP KAYCLPPEVELSNRVLR Y+ +ADRFLRVTFMDE M  +
Sbjct: 400  VKDPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKI 459

Query: 1255 NKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRS 1434
            N NVL YYV P+ + ITSNS  Q+T +FKR + ILN+GFYLCGRKY+FLAFSSNQLRDRS
Sbjct: 460  NSNVLNYYVAPIVKEITSNSFLQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRS 519

Query: 1435 AWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIE 1614
            AWFFAE  N  V  I +WMGKF N+N+AKCAARMGQCFSSTYATVEV S++VN  +PDI+
Sbjct: 520  AWFFAECVNISVGKITSWMGKFNNKNVAKCAARMGQCFSSTYATVEVTSSEVND-IPDIK 578

Query: 1615 RNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHL 1794
            RNGYVFSDGIGM++  LA+EVAEKL++  +PPCAYQIR+AG KGV+A WP+  DG  L L
Sbjct: 579  RNGYVFSDGIGMITPDLALEVAEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSL 638

Query: 1795 RTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRML 1974
            RTSM KFES HT LEICSWTR+QPGFLNRQI+TLLS L VED IFWRMQE MV +L++ML
Sbjct: 639  RTSMNKFESKHTTLEICSWTRYQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQML 698

Query: 1975 EDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFV 2154
             DTD+AFDV+T SC +QG+ AAIMLSAGFKPQTEPHLRGMLT I+AAQL  LREKARIFV
Sbjct: 699  VDTDVAFDVLTASCAEQGNAAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFV 758

Query: 2155 PSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKN 2334
             SGRWLMG LDELGVLE GQCF+QVS P LE  F KHGS F++ E+ LQV+KG V IAKN
Sbjct: 759  HSGRWLMGVLDELGVLEQGQCFVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKN 818

Query: 2335 PCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 2514
            PCLHPGD+RILEAVDAP LHHL+DCLVFPQKGDRPHT+EASGSDLDGDLYFVTWDENLIP
Sbjct: 819  PCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIP 878

Query: 2515 PSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            PSK+SW+PM Y   EA+   R V   DII+FF KNM NE+LG ICNA
Sbjct: 879  PSKKSWMPMQYDPAEAKLQGRPVTQQDIIDFFVKNMTNENLGPICNA 925


>gb|EPS62146.1| hypothetical protein M569_12646, partial [Genlisea aurea]
          Length = 1195

 Score = 1279 bits (3309), Expect = 0.0
 Identities = 623/886 (70%), Positives = 720/886 (81%), Gaps = 1/886 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEIDTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELILR 180
            RLKTSS PPDSYPNY+ID   +Q  +DYE+ + HA+VHFA+   A  A DAA  G L + 
Sbjct: 38   RLKTSSLPPDSYPNYDIDISRVQGNNDYERAKRHAYVHFAIPKCAKLAADAAASGRLTMG 97

Query: 181  GKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLVD 360
             K L+V LGP+NPH +NE+RRT   YKL DV VEVG M+S+ EF VGWRGP +GVDF+VD
Sbjct: 98   QKQLRVGLGPQNPHRMNERRRTISSYKLFDVSVEVGSMKSQNEFYVGWRGPSSGVDFIVD 157

Query: 361  PFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLAS 540
            P+NG CK+QF +DTAFS   E +  V+KCNF+IEF PREIIEIK YRDF SLI++LQL S
Sbjct: 158  PYNGTCKIQFERDTAFSITDEDRLVVMKCNFKIEFTPREIIEIKRYRDFYSLIIMLQLFS 217

Query: 541  SPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLTK 720
            SPLIYYRTADDDI+++VPFDLL+DDDPWIRTTDFT +GAIGRCNTYRISVRP  GP L K
Sbjct: 218  SPLIYYRTADDDIEDAVPFDLLEDDDPWIRTTDFTSTGAIGRCNTYRISVRPLSGPQLLK 277

Query: 721  ALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMHK 900
            AL+YLR RRV V  E     + V DEP FG  M DPFFCIQ  +G+SFK+ FLVNAV+H 
Sbjct: 278  ALDYLRLRRVKVFDEFKGKHIRVMDEPGFGTLMSDPFFCIQNVKGLSFKITFLVNAVLHS 337

Query: 901  GIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLLE 1080
            GIIN HQM+E+FFDLLR++PEE+   AL H+   K PVYDA KAL+ VQKWLL NPKLLE
Sbjct: 338  GIINYHQMTEEFFDLLRTQPEELIVPALTHLSFSKRPVYDAVKALKAVQKWLLGNPKLLE 397

Query: 1081 RPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLNK 1260
            RP    D VEVRRLIITP +AYC+PPEVELSNRVLRNYR+++DRFLRVTFMDEAM  LNK
Sbjct: 398  RPMRNEDTVEVRRLIITPTRAYCIPPEVELSNRVLRNYRDLSDRFLRVTFMDEAMQILNK 457

Query: 1261 NVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSAW 1440
            N+L +Y   + R   SN  PQ+T MFKR+KDIL +GFYLCG KYSFLA+S+ QLRDRSAW
Sbjct: 458  NLLVFYPDRILREDNSNLIPQKTMMFKRIKDILMDGFYLCGMKYSFLAYSAGQLRDRSAW 517

Query: 1441 FFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIERN 1620
            FFAED    V NIK WMGKFT+RN+AKCAARMGQCFSSTYATVEVP   VN KL +++RN
Sbjct: 518  FFAEDSKIKVKNIKKWMGKFTDRNVAKCAARMGQCFSSTYATVEVPHGDVNFKLLEVKRN 577

Query: 1621 GYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDG-THLHLR 1797
            GYVFSDGIG +S  LA EVA+KLQ+S DPP AYQIRY GYKGVIA WP +KDG + L LR
Sbjct: 578  GYVFSDGIGTISPELASEVAKKLQLSADPPSAYQIRYGGYKGVIACWP-VKDGESRLSLR 636

Query: 1798 TSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLE 1977
             SM+KFES H +LEICSWT+F PGFLNRQI+TLL+AL V D IFW MQETM+ +L+RM+ 
Sbjct: 637  RSMKKFESEHAVLEICSWTKFLPGFLNRQIITLLTALGVPDDIFWNMQETMIQKLNRMIG 696

Query: 1978 DTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVP 2157
            D  +AFDV+T SC + GSTAA+MLSAGF+PQTEPHLRGML+SIRAAQ GDLREK RIFV 
Sbjct: 697  DAKIAFDVLTNSCAESGSTAAVMLSAGFRPQTEPHLRGMLSSIRAAQFGDLREKTRIFVS 756

Query: 2158 SGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNP 2337
            SGRWLMGCLDE GVLE GQCFIQ S  SL   FVKHGS FSE  K L+V++GLV +AKNP
Sbjct: 757  SGRWLMGCLDEAGVLEQGQCFIQASSFSLLNCFVKHGSSFSEISKSLKVIEGLVVVAKNP 816

Query: 2338 CLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 2517
            CLHPGD+RILEAVDAPEL HLHDCLVFP+KG+RPHT+EASGSDLDGD+YFVTWDENLIPP
Sbjct: 817  CLHPGDIRILEAVDAPELRHLHDCLVFPKKGERPHTDEASGSDLDGDVYFVTWDENLIPP 876

Query: 2518 SKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            SK+SW PM+Y +   REL R V H DI+EFF++NMVN++LGTICNA
Sbjct: 877  SKQSWPPMEYQSVPVRELSRQVTHLDIVEFFSRNMVNDNLGTICNA 922


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1266 bits (3275), Expect = 0.0
 Identities = 611/886 (68%), Positives = 715/886 (80%), Gaps = 1/886 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTS TPP+S PN+EI D   I+  DDY KVEPHAFVHFA   S T+ +DA GR +L  
Sbjct: 44   RLKTSWTPPESVPNFEISDAADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFF 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
              + LK SLGPEN  ++N++RRT IP+KL+DV +E+G +   +EF V W+GP  GVDF+V
Sbjct: 104  NNQALKASLGPENLFNMNKRRRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+G CK  F +DTAFSFKG  K AVI C+F+ EF  REI E KHY +    ++LL+L 
Sbjct: 164  DPFDGTCKFCFRRDTAFSFKGLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLV 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            SSP + YRTADDDI +SV FDLLDDDDPWIRTTDFTP+GAIGRCN YR+ + PR+G  L 
Sbjct: 224  SSPWVSYRTADDDIDQSVLFDLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLK 283

Query: 718  KALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMH 897
            KA+ YL++RRV  ++     R  +QDEP FG PM D  F I Y++ ISF +LFLVNAVMH
Sbjct: 284  KAMIYLKERRVQELFIKKPPR--IQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMH 341

Query: 898  KGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLL 1077
            KGI+NQHQ+SE FFDLLR++PEE+N  ALKH+CSYKHPV+DA K L+LVQ+WLL NPKL+
Sbjct: 342  KGILNQHQLSESFFDLLRNQPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLI 401

Query: 1078 ERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLN 1257
            + P+ ++DI EVRRL+ITP KAYCLPPEVELSNRVLR Y+ +ADRFLRVTFMDE M T+N
Sbjct: 402  KNPKRLDDIAEVRRLVITPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMN 461

Query: 1258 KNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSA 1437
             NV+  YV P+ + IT N+ PQ+T ++ R++ IL NGF+LCGRKYSFLAFSSNQLRDRSA
Sbjct: 462  SNVMNSYVAPIVKEITENTFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSA 521

Query: 1438 WFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIER 1617
            WFFAEDK   +  IKNWMG+FTNRN+AKCAARMGQCFSSTYATVEVPSTQVN +LPDIER
Sbjct: 522  WFFAEDKTISIQGIKNWMGRFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIER 581

Query: 1618 NGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLR 1797
            NGYVFSDGIG ++  LA+EVAEKL++  DPP AYQIRY G KGV+A WP+  DG  L LR
Sbjct: 582  NGYVFSDGIGRITPDLAMEVAEKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLR 641

Query: 1798 TSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLE 1977
             SM KF S+HT LEICSWTR QPGFLNRQI+TLLSAL V D IFW MQETMVS+L +ML 
Sbjct: 642  RSMNKFASDHTTLEICSWTRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLV 701

Query: 1978 DTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVP 2157
            DTD+AFDV+T SC +QG++AAIMLSAGFKPQTEPHLRGMLT I+AAQL  LREK RIFVP
Sbjct: 702  DTDVAFDVLTASCAEQGNSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVP 761

Query: 2158 SGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNP 2337
            SGRWLMGCLDELGVLE GQCF+QVS PSLE  F KHGSRF + +K LQV+KG V +AKNP
Sbjct: 762  SGRWLMGCLDELGVLEQGQCFVQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNP 821

Query: 2338 CLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 2517
            CLHPGD+RILEAVDAP LHHLHDCLVFPQKG RPHT+EASGSDLDGDLYFVTWDENLIPP
Sbjct: 822  CLHPGDIRILEAVDAPGLHHLHDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPP 881

Query: 2518 SKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
             K+SW PM+Y   EA+   R V   D+IEFF +NMVNE+LG ICNA
Sbjct: 882  RKKSWQPMEYEPAEAKLSGRSVTSQDLIEFFVRNMVNENLGAICNA 927


>ref|XP_006483358.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X3 [Citrus
            sinensis]
          Length = 1025

 Score = 1259 bits (3257), Expect = 0.0
 Identities = 609/887 (68%), Positives = 732/887 (82%), Gaps = 2/887 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTS TP +SYP++ + +T  +++ DDYEKVEPHAFVHFA+    T A+DAAGR EL L
Sbjct: 44   RLKTSCTPSESYPDFSVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFL 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
             G+ LKVSLGPENP  LN++ RT+ P+KL DV VE+G + SR+EF V WRGP +G DFLV
Sbjct: 104  NGQALKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+G CK  FT+D AF+ K   + AVIKC F++EFL REI  +K Y +F  + +LLQLA
Sbjct: 164  DPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLA 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            SSP ++YRTADDDI   VPFD+LDDDDPWIRTTDFTPSGAIGRCN+YRIS+  R+   L+
Sbjct: 224  SSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLS 283

Query: 718  KALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMH 897
            K + YL +RRV V  +S    + +++EPDF +PM DPFFCI Y+EGISF+++FLVNAVMH
Sbjct: 284  KVITYLGERRVQV--DSLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMH 341

Query: 898  KGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLL 1077
            KGIINQHQ+S+ FFDLLR +  EVN  ALKH+ SYK PV+DA K L+LVQ+WLL +P+L 
Sbjct: 342  KGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELY 401

Query: 1078 ERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLN 1257
            + P++++DIVEVRRL+ITP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE + T+N
Sbjct: 402  KGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMN 461

Query: 1258 KNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSA 1437
             NVL+Y++ P+ R IT NS  Q+T +FKRV+ IL+ GFYLCGRK+SFLAFSS+QLRD SA
Sbjct: 462  ANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSA 521

Query: 1438 WFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIER 1617
            WFF+ED  T V +IK WMG+FT++NIAKCAARMGQCFSSTYATVEVP T+V+ +LPDI+R
Sbjct: 522  WFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR 581

Query: 1618 NGYVFSDGIGMMSVSLAVEVAEKLQISTD-PPCAYQIRYAGYKGVIARWPNIKDGTHLHL 1794
            NGYVFSDGIG ++  LA+EVA+KL++  + PPCAYQIRYAG KGV+A WP   DG  + L
Sbjct: 582  NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSL 641

Query: 1795 RTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRML 1974
            R SM KF+S+HT LEICSWTRFQPGFLNRQI+TLLS L V D +FW MQ++M+S+L++ML
Sbjct: 642  RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701

Query: 1975 EDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFV 2154
             D+D+AF+V+T +C +QG+TAAIMLSAGF PQTEPHLRGMLT IRAAQL  LREKARIFV
Sbjct: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761

Query: 2155 PSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKN 2334
            P+GRWLMGCLDELGVLE GQCFIQVS P L   F KHGSRF+E  KKLQV+KG V IAKN
Sbjct: 762  PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKN 820

Query: 2335 PCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 2514
            PCLHPGD+RILEAVD PELHHL+DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP
Sbjct: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880

Query: 2515 PSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            PSK+SW PM+Y A EA+ L R V   DIIEFF K+MVNE+LGTICNA
Sbjct: 881  PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNA 927


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1259 bits (3257), Expect = 0.0
 Identities = 609/887 (68%), Positives = 732/887 (82%), Gaps = 2/887 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTS TP +SYP++ + +T  +++ DDYEKVEPHAFVHFA+    T A+DAAGR EL L
Sbjct: 44   RLKTSCTPSESYPDFSVTNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFL 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
             G+ LKVSLGPENP  LN++ RT+ P+KL DV VE+G + SR+EF V WRGP +G DFLV
Sbjct: 104  NGQALKVSLGPENPFRLNQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+G CK  FT+D AF+ K   + AVIKC F++EFL REI  +K Y +F  + +LLQLA
Sbjct: 164  DPFDGTCKFCFTRDIAFALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLA 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            SSP ++YRTADDDI   VPFD+LDDDDPWIRTTDFTPSGAIGRCN+YRIS+  R+   L+
Sbjct: 224  SSPRVWYRTADDDILVLVPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLS 283

Query: 718  KALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMH 897
            K + YL +RRV V  +S    + +++EPDF +PM DPFFCI Y+EGISF+++FLVNAVMH
Sbjct: 284  KVITYLGERRVQV--DSLSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMH 341

Query: 898  KGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLL 1077
            KGIINQHQ+S+ FFDLLR +  EVN  ALKH+ SYK PV+DA K L+LVQ+WLL +P+L 
Sbjct: 342  KGIINQHQLSDSFFDLLRGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELY 401

Query: 1078 ERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLN 1257
            + P++++DIVEVRRL+ITP KAYCLPPEVELSNRVLR Y+++ADRFLRVTFMDE + T+N
Sbjct: 402  KGPKQIDDIVEVRRLVITPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMN 461

Query: 1258 KNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSA 1437
             NVL+Y++ P+ R IT NS  Q+T +FKRV+ IL+ GFYLCGRK+SFLAFSS+QLRD SA
Sbjct: 462  ANVLSYFIAPIVRDITLNSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSA 521

Query: 1438 WFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIER 1617
            WFF+ED  T V +IK WMG+FT++NIAKCAARMGQCFSSTYATVEVP T+V+ +LPDI+R
Sbjct: 522  WFFSEDGKTSVLDIKKWMGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKR 581

Query: 1618 NGYVFSDGIGMMSVSLAVEVAEKLQISTD-PPCAYQIRYAGYKGVIARWPNIKDGTHLHL 1794
            NGYVFSDGIG ++  LA+EVA+KL++  + PPCAYQIRYAG KGV+A WP   DG  + L
Sbjct: 582  NGYVFSDGIGKITPDLAMEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSL 641

Query: 1795 RTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRML 1974
            R SM KF+S+HT LEICSWTRFQPGFLNRQI+TLLS L V D +FW MQ++M+S+L++ML
Sbjct: 642  RESMNKFQSHHTTLEICSWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQML 701

Query: 1975 EDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFV 2154
             D+D+AF+V+T +C +QG+TAAIMLSAGF PQTEPHLRGMLT IRAAQL  LREKARIFV
Sbjct: 702  VDSDVAFEVLTAACAEQGNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFV 761

Query: 2155 PSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKN 2334
            P+GRWLMGCLDELGVLE GQCFIQVS P L   F KHGSRF+E  KKLQV+KG V IAKN
Sbjct: 762  PAGRWLMGCLDELGVLEGGQCFIQVSEPFLGNCFSKHGSRFAET-KKLQVIKGFVVIAKN 820

Query: 2335 PCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 2514
            PCLHPGD+RILEAVD PELHHL+DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP
Sbjct: 821  PCLHPGDIRILEAVDHPELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 880

Query: 2515 PSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            PSK+SW PM+Y A EA+ L R V   DIIEFF K+MVNE+LGTICNA
Sbjct: 881  PSKKSWPPMEYNAAEAKTLTRPVDQRDIIEFFAKHMVNENLGTICNA 927


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1245 bits (3221), Expect = 0.0
 Identities = 613/886 (69%), Positives = 720/886 (81%), Gaps = 1/886 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTS TPP+SYPN+EI DT  IQRKD+Y+KVEPHAFVHFA   + T A+DAAGR EL  
Sbjct: 44   RLKTSWTPPESYPNFEITDTTVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAF 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
              + LKVSLGPENP++LN +RR T P+KL DV +E+G + S +EF+VGWRGP +GV+FLV
Sbjct: 104  NNQLLKVSLGPENPYYLNRRRRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+  CK  F++DTAFSFKG  + AVIKC+F++EFL REI E+K Y +    +VLLQLA
Sbjct: 164  DPFDCTCKFCFSRDTAFSFKGTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLA 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            SSP ++YRTADDD +++VPF LLDDDD WIRTTDFT SGAIGRCNTYR+ VRPR+G  L 
Sbjct: 224  SSPWVWYRTADDDFEKTVPFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLK 283

Query: 718  KALEYLRKRRVPVIYESPRHRLLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVMH 897
            KA++YLR+RRVPV  E  R +L ++DEPDFG  M D F+ I YKEGI F+++FLVNAV+H
Sbjct: 284  KAMDYLRERRVPV--EDLRSQLRIRDEPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLH 340

Query: 898  KGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKLL 1077
            KGI NQHQ+S  FF LLR++  EVN  ALKH+ SY+HPVYDA++ L+ V  WLL NPKL 
Sbjct: 341  KGIFNQHQLSMDFFRLLRNQSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLF 400

Query: 1078 ERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTLN 1257
            + P +++DIVE+RRL+ITP KAYCL PEVELSNRVLR Y+++ADRFLRVTFMDE M  +N
Sbjct: 401  KSPPQLDDIVEIRRLVITPTKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMN 460

Query: 1258 KNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRSA 1437
             NVLTYY   + R +TS S  Q+T +FKRVK IL +GFYLCGRKYSFLAFS+NQLRDR+A
Sbjct: 461  ANVLTYYNAAIVRDVTSTSFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAA 520

Query: 1438 WFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIER 1617
            WFFAED    V  I  WMGKFTNRNIAKCAARMGQCFSSTYATVEVPS QVN  LPDI+R
Sbjct: 521  WFFAEDGKINVLQIIGWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKR 580

Query: 1618 NGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHLR 1797
            NGY FSDGIG ++  LA+EVA+KL++  +PPCAYQIRYAG KGV+A WP   D   L LR
Sbjct: 581  NGYDFSDGIGKITPDLAMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLR 640

Query: 1798 TSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRMLE 1977
            +SM KF S+HT LEICSWTRFQPGFLNRQI+TLLS L V D +FW MQ +MVS+LD++L 
Sbjct: 641  SSMIKFFSHHTTLEICSWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLV 700

Query: 1978 DTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFVP 2157
            DTD AF+VV  SC +QG T AIMLSAGFKPQTEPHLRGMLT +RA+QL  LREK+RIF+ 
Sbjct: 701  DTDAAFEVVISSCGEQGHTPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIH 760

Query: 2158 SGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKNP 2337
            SGRWLMG LDELGVLE GQCFIQVS PSL+  F+KHGSRF+E +K  +V+KGLV IAKNP
Sbjct: 761  SGRWLMGVLDELGVLEQGQCFIQVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNP 820

Query: 2338 CLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPP 2517
            CLHPGD+RILEAVDAP LHHL+DCLVFPQKG+RPHTNEASGSDLDGDLYFVTW+E LIPP
Sbjct: 821  CLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPP 880

Query: 2518 SKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            SK+S  PM Y     REL R V H DIIEFF+KNMVNE LG+ICNA
Sbjct: 881  SKKSSQPMQYDLDAPRELNRSVTHKDIIEFFSKNMVNEHLGSICNA 926


>gb|AGU69384.1| RNA-dependendent RNA polymerase 6-like protein [Lotus japonicus]
          Length = 1201

 Score = 1242 bits (3214), Expect = 0.0
 Identities = 603/887 (67%), Positives = 724/887 (81%), Gaps = 2/887 (0%)
 Frame = +1

Query: 1    RLKTSSTPPDSYPNYEI-DTESIQRKDDYEKVEPHAFVHFAVKHSATSALDAAGRGELIL 177
            RLKTS TPP+SYP + + DT  ++R DDY+KVEPHAFVHFA+  S T ALDA+G  +L+ 
Sbjct: 44   RLKTSWTPPESYPEFNVADTALVKRTDDYKKVEPHAFVHFALPESVTEALDASGSCDLMW 103

Query: 178  RGKPLKVSLGPENPHHLNEKRRTTIPYKLSDVFVEVGVMRSREEFVVGWRGPRTGVDFLV 357
             GKPLKV  GP+NP+ LN++RR   P+KLSDV VE+G + S EEFVV WRGP  GV+ LV
Sbjct: 104  EGKPLKVISGPQNPYFLNQRRRKETPFKLSDVLVEIGTLVSPEEFVVAWRGPEKGVNLLV 163

Query: 358  DPFNGRCKLQFTKDTAFSFKGEVKSAVIKCNFRIEFLPREIIEIKHYRDFPSLIVLLQLA 537
            DPF+  C+L+F++DTAFS K   K AVIKC+F++EF+ R+I E++ Y D    +VLL LA
Sbjct: 164  DPFDRMCRLRFSRDTAFSIKQNEKKAVIKCDFKVEFMVRDIYEVRRYDDTSYRVVLLHLA 223

Query: 538  SSPLIYYRTADDDIKESVPFDLLDDDDPWIRTTDFTPSGAIGRCNTYRISVRPRYGPYLT 717
            SSPL++YRTADDDI+ESV FDLLDDDDPWIRTTDFTPSGAIGRCN YRIS+ PR+G  L 
Sbjct: 224  SSPLVWYRTADDDIEESVSFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLM 283

Query: 718  KALEYLRKRRVPVIYESPRHR-LLVQDEPDFGMPMLDPFFCIQYKEGISFKVLFLVNAVM 894
            KA+ YL  +RV    E P  R L +QDEP+FG+PM D FF I  +EGI+F ++FLVNAV+
Sbjct: 284  KAMAYLNFQRVQ---EFPLKRPLRIQDEPNFGVPMSDDFFYIHCQEGITFDIMFLVNAVI 340

Query: 895  HKGIINQHQMSEKFFDLLRSRPEEVNTVALKHMCSYKHPVYDAFKALELVQKWLLNNPKL 1074
            HKGI+N + +S++FF++LR++P+EVN  ALKH+CSYK PV+DA K L+ VQ+WLL NPKL
Sbjct: 341  HKGILNPYSLSDRFFEVLRNQPQEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKL 400

Query: 1075 LERPREMNDIVEVRRLIITPAKAYCLPPEVELSNRVLRNYRNIADRFLRVTFMDEAMMTL 1254
             +  ++ +DIVEVRRL+ITP +AYC+PPE ELSNRVLR YR +++RFLRVTFMDE M T+
Sbjct: 401  YQSSKQADDIVEVRRLVITPTRAYCVPPEHELSNRVLRRYREVSNRFLRVTFMDEGMQTI 460

Query: 1255 NKNVLTYYVGPMARGITSNSNPQRTTMFKRVKDILNNGFYLCGRKYSFLAFSSNQLRDRS 1434
            N N L YYV P+ + ITSNS PQ+T ++KRVK IL  GF+ C RKY+FLAFSSNQLRDRS
Sbjct: 461  NVNALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFHFCDRKYAFLAFSSNQLRDRS 520

Query: 1435 AWFFAEDKNTGVANIKNWMGKFTNRNIAKCAARMGQCFSSTYATVEVPSTQVNSKLPDIE 1614
            AWFFAED       I++WMG+F+NRN+AKCAARMGQCFSSTYATVEVP+T+VNS LPDIE
Sbjct: 521  AWFFAEDDKIKCDGIRDWMGRFSNRNVAKCAARMGQCFSSTYATVEVPATEVNSMLPDIE 580

Query: 1615 RNGYVFSDGIGMMSVSLAVEVAEKLQISTDPPCAYQIRYAGYKGVIARWPNIKDGTHLHL 1794
            RN YVFSDGIG+++  LA EVAEKL++    P AYQIRYAG+KGV+A WP   DG  L L
Sbjct: 581  RNKYVFSDGIGIITPDLAGEVAEKLKLDI-APSAYQIRYAGFKGVVASWPAKGDGIRLSL 639

Query: 1795 RTSMRKFESNHTILEICSWTRFQPGFLNRQIVTLLSALEVEDGIFWRMQETMVSRLDRML 1974
            RTSM KF+S+HT LEIC+WTRFQPGFLNRQI+TLLSALEV D +FW+MQE M+S+L++ML
Sbjct: 640  RTSMNKFQSSHTTLEICAWTRFQPGFLNRQIITLLSALEVSDEVFWKMQEVMISKLNQML 699

Query: 1975 EDTDMAFDVVTGSCTDQGSTAAIMLSAGFKPQTEPHLRGMLTSIRAAQLGDLREKARIFV 2154
             + D+AFDV+T SC + G+ AAIMLS GF PQTEPHL+GMLTSIRAAQL  LREK+RIFV
Sbjct: 700  VNADVAFDVLTKSCAEHGNAAAIMLSCGFSPQTEPHLKGMLTSIRAAQLWGLREKSRIFV 759

Query: 2155 PSGRWLMGCLDELGVLEHGQCFIQVSIPSLEESFVKHGSRFSENEKKLQVVKGLVAIAKN 2334
             SGRWLMG LDELGVLE GQCF+QVS PSLE  F KHGSRFSE  K LQVVKG V IAKN
Sbjct: 760  SSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSET-KSLQVVKGYVVIAKN 818

Query: 2335 PCLHPGDVRILEAVDAPELHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIP 2514
            PCLHPGDVRILEA+D+P+LHHL+DCLVFPQKGDRPHTNEASGSDLDGDLYFVTWD+NLIP
Sbjct: 819  PCLHPGDVRILEAIDSPDLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDDNLIP 878

Query: 2515 PSKRSWIPMDYAAGEARELPRDVRHSDIIEFFTKNMVNESLGTICNA 2655
            PSKRSWIPM+Y A E++   R V   DII+FF +NMVNE+LG ICNA
Sbjct: 879  PSKRSWIPMEYDAQESKLQTRKVTSRDIIDFFVRNMVNENLGAICNA 925