BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00022899
         (1845 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   600   e-169
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]   581   e-163
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   523   e-146
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   516   e-143
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  516   e-143
gb|AAB82754.1| retrofit [Oryza longistaminata]                        516   e-143
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   513   e-142
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]   511   e-142
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   507   e-141
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   506   e-140
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   505   e-140
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   505   e-140
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   504   e-140
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   501   e-139
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  500   e-139
ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624...   498   e-138
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   498   e-138
emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera]   494   e-137
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   494   e-137
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   493   e-137

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  600 bits (1547), Expect = e-169
 Identities = 295/534 (55%), Positives = 392/534 (73%), Gaps = 3/534 (0%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLPPG 1664
            TRSK GIFKP VY   ++ + EPN  QEA+   +WKEAM +E+ AL KNKTW++ +LP  
Sbjct: 726  TRSKNGIFKPXVYTVDLNVE-EPNTFQEAISHPKWKEAMDEEFRALMKNKTWSLVSLPTN 784

Query: 1663 RNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILTIA 1484
            R  +GCRWVFK+KRN DGSVSRYKARLVAKGY+Q+ G DF + FSPVVKPTT R++L IA
Sbjct: 785  RTSVGCRWVFKLKRNPDGSVSRYKARLVAKGYSQVPGFDFYETFSPVVKPTTIRVVLAIA 844

Query: 1483 LSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQ--VCKLHKALYGLKQAS 1310
            +S+ W +RQ+DV+NAFL+G L +  E+YM+QPPGF+   N+ Q  VCKLHKALYGLKQA 
Sbjct: 845  VSQSWCIRQLDVNNAFLNGELQE--EVYMDQPPGFDGKTNQEQKLVCKLHKALYGLKQAP 902

Query: 1309 KAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVTSLIDA 1130
            +AWF++L+  L   GF ++K+D SLF+R +  S            +TG+S  ++  LI  
Sbjct: 903  RAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELISR 962

Query: 1129 LNHFFPIKDLGKLHYFLGVEIHYTKDGML-LSQKRYAQDLLRKVQMTGSRGXXXXXXXXX 953
            L   F +KDLG+L YFLG+E+  T DG L LSQK+Y QDLL+K +M G++          
Sbjct: 963  LRGLFSLKDLGELSYFLGIEVKKTADGGLHLSQKKYIQDLLKKTKMDGAKSLPTPMLSGL 1022

Query: 952  XXSKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLR 773
              S   G+P  +   YR VVG+LQY+TITRPEI F+VNK+ QFMQ PLD HWKA+KR+LR
Sbjct: 1023 KLSAGMGDPIDNVFEYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKAVKRILR 1082

Query: 772  YISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQHTV 593
            Y++GT DLG+ L  S  +++ GF D+DW SD DDR+STSG+C+F+GK+L+SWSSKKQHT 
Sbjct: 1083 YLNGTTDLGIVLKPSETMNLVGFCDADWGSDVDDRRSTSGHCVFLGKSLVSWSSKKQHTT 1142

Query: 592  SRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQARTK 413
            SRSS+EAEYRSL    SE+LWLQ+LL+EL  +    PVIW DN+STV +SANP++ +RTK
Sbjct: 1143 SRSSTEAEYRSLASLTSEMLWLQSLLSELQTKMTMVPVIWCDNISTVSLSANPVLHSRTK 1202

Query: 412  HVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSAL 251
            H+E+DL+F+REKV  + ++V+H+P  DQ+AD  TKPL  +FF ++R +L V++L
Sbjct: 1203 HMELDLYFVREKVMERKLVVNHVPTEDQVADVFTKPLSFRFFDKLREKLTVASL 1256


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score =  581 bits (1498), Expect = e-163
 Identities = 283/540 (52%), Positives = 383/540 (70%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLPPG 1664
            TR+K+GI KPK+   F+ A  EP++V  AL  + WK+AM  EY+ALQ+N TW++  LP G
Sbjct: 918  TRAKSGIVKPKI---FIAAIREPSSVSAALQQDEWKKAMVAEYDALQRNNTWSLVPLPAG 974

Query: 1663 RNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILTIA 1484
            R  IGC+WV+K K N DG+V +YKARLVAKG+ Q AG DFT+ FSPVVKP+T R++ TIA
Sbjct: 975  RQAIGCKWVYKTKENPDGTVQKYKARLVAKGFHQQAGFDFTETFSPVVKPSTVRVVFTIA 1034

Query: 1483 LSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQASKA 1304
            LS+ W ++Q+DV+NAFL+G  D   E++M+QP GF   +N   VC+LHKALYGLKQA +A
Sbjct: 1035 LSRNWAIKQLDVNNAFLNG--DLQEEVFMQQPQGFIDEQNPNLVCRLHKALYGLKQAPRA 1092

Query: 1303 WFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVTSLIDALN 1124
            WFE+L   L S GF ++K+D SLF+R +PN             + G+    +TSLI  LN
Sbjct: 1093 WFEKLHRALLSFGFVSAKSDQSLFLRFTPNHITYVLVYVDDILVIGSDTAAITSLIAQLN 1152

Query: 1123 HFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXXXXXXXS 944
              F +KDLG++HYFLG+++ +T +G+ LSQ +Y +DLL+K +M   +             
Sbjct: 1153 SEFSLKDLGEVHYFLGIQVSHTNNGLHLSQTKYIRDLLQKTKMVHCKPARTPLPTGLKLR 1212

Query: 943  KFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLRYIS 764
               G+P  D   YR  VG+LQY+TITRPE++F+VNK+ QFMQNP + HWK +KR+LRY+ 
Sbjct: 1213 VGDGDPVEDLHGYRSTVGALQYVTITRPELSFSVNKVCQFMQNPTEEHWKVVKRILRYLQ 1272

Query: 763  GTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQHTVSRS 584
            GTL  GL L KS +L + GF D+DWASD DDR+STSG+C+F+G NLISW SKKQH VSRS
Sbjct: 1273 GTLQHGLHLKKSSNLDLIGFCDADWASDLDDRRSTSGHCVFLGPNLISWQSKKQHIVSRS 1332

Query: 583  SSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQARTKHVE 404
            S E EYRSL   ++E+ WL++LL+EL L   +PP++W DNLSTV +SANP++ ARTKH+E
Sbjct: 1333 SIEIEYRSLAGLVAEITWLRSLLSELQLPLAKPPLVWCDNLSTVLLSANPVLHARTKHIE 1392

Query: 403  IDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSALSSLELTGDV 224
            +DL+F+REKV  K + V H+P++DQ+AD LTK +    F   R++L +  LS+L L GDV
Sbjct: 1393 LDLYFVREKVIRKEVEVRHVPSADQLADVLTKTVSSTQFIEFRHKLRIENLSTLSLRGDV 1452


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  523 bits (1348), Expect = e-146
 Identities = 263/540 (48%), Positives = 363/540 (67%), Gaps = 9/540 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVY-------GAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWT 1685
            TR + G+ KPKVY       G F  +  EP ++ EAL D  WK+AM  EY AL KNKTW 
Sbjct: 777  TRLQQGVRKPKVYTDGTIRYGCFTSSG-EPYDLNEALGDVNWKDAMDIEYSALMKNKTWH 835

Query: 1684 ITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTA 1505
            +     GRNVIGC+WV+KIKR ADGS+ RYKARLVAKGY Q  G+D+ D FSPVVK  T 
Sbjct: 836  LVPPKKGRNVIGCKWVYKIKRKADGSLDRYKARLVAKGYKQQYGIDYDDTFSPVVKHATI 895

Query: 1504 RLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYG 1325
            R+IL+IA+S+GW L Q+DV NAFLHG+L++  E+YM+QPPG+E +     VCKL KALYG
Sbjct: 896  RIILSIAVSRGWSLCQLDVQNAFLHGVLEE--EVYMQQPPGYEDSTKLNYVCKLDKALYG 953

Query: 1324 LKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVT 1145
            LKQA +AW+ RL N L SLGF+ASKAD SLF     +             +  ++     
Sbjct: 954  LKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLVYVDDIIVASSTHKATE 1013

Query: 1144 SLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXX 965
            +L+  LN  F +KDLG L+YFLG+E++  +DG++L+Q +YA DLL+KV M+  +      
Sbjct: 1014 ALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSDCKPISTPL 1073

Query: 964  XXXXXXSKFQGNPSVDGQL--YRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKA 791
                  S  +G+P  +  +  YR +VG+LQYLT+TRP+I F+VNK+ QF+  P  LHW A
Sbjct: 1074 STSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAA 1133

Query: 790  MKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSS 611
            +KR+LRYI    +LGL + +S    V+ FSD+DWA   DDRKST G+ +F+G NL+SWS+
Sbjct: 1134 VKRILRYIKQCTNLGLHIHRSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLGSNLVSWSA 1193

Query: 610  KKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPI 431
            +KQ TVSRSS+E+EY++L +A +E++W+Q LL E+ ++S +   +W DNL   ++SANPI
Sbjct: 1194 RKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGAKYLSANPI 1253

Query: 430  IQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSAL 251
              ARTKH+E+D HF+R++V  K + + ++P  DQ+AD  TKPL  +     +  LN++ L
Sbjct: 1254 FHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLSVRLLENFKVNLNLTRL 1313


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  516 bits (1330), Expect = e-143
 Identities = 262/539 (48%), Positives = 357/539 (66%), Gaps = 11/539 (2%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYGAFVDADV---------EPNNVQEALCDNRWKEAMAKEYEALQKNKT 1691
            TR ++GI K KVY    D  V         EP +++EA+ +  WKEAM  EY AL +NKT
Sbjct: 279  TRLQSGIRKEKVY---TDGTVKWLNFTSSGEPQSLEEAVNNKHWKEAMDAEYMALIENKT 335

Query: 1690 WTITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPT 1511
            W +     GRNVI C+WV+K+KR ADGS+ RYKARLVAKG+ Q  G+D+ D FSPVVK  
Sbjct: 336  WHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAA 395

Query: 1510 TARLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKAL 1331
            T R++L++A+S+GW LRQ+DV NAFLHG+L++  E+YMEQPPG+E       VCKL KAL
Sbjct: 396  TIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEE--EVYMEQPPGYEKKSMPNYVCKLDKAL 453

Query: 1330 YGLKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQ 1151
            YGLKQA +AW+ RL   LS LGF  SKAD SLF                   +  +    
Sbjct: 454  YGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIMASSVPDA 513

Query: 1150 VTSLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXX 971
             ++L+  L+  F +KDLG LHYFLG+E+H  KDG++LSQ++YA DLLR+V M   +    
Sbjct: 514  TSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVST 573

Query: 970  XXXXXXXXSKFQGN--PSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHW 797
                    S  +G      D   YR VVG+LQYLT+TRP+I+F++NK+ QF+  P   HW
Sbjct: 574  PLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHW 633

Query: 796  KAMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISW 617
             A+KR+LRY+  T+D GL+  ++P L V+GFSD+DWA  PDDR+ST G+ +F+G NL+SW
Sbjct: 634  AAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSW 693

Query: 616  SSKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSAN 437
            S++KQ TVSRSS+EAEY++L +A +E++W+QTLL EL + S +   +W DNL   ++SAN
Sbjct: 694  SARKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSAN 753

Query: 436  PIIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 260
            PI  ARTKH+E+D HF+RE+V  K + + +I   DQ+AD  TK +  +     +N LN+
Sbjct: 754  PIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 812


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  516 bits (1330), Expect = e-143
 Identities = 260/540 (48%), Positives = 355/540 (65%), Gaps = 9/540 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVY-------GAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWT 1685
            TR ++GI K KVY       G F     EP N +EAL D  WK AM  EY+AL KN TW 
Sbjct: 900  TRLRSGIRKEKVYTDGTVKYGCFTSTG-EPQNDKEALGDKNWKAAMEAEYDALIKNDTWH 958

Query: 1684 ITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTA 1505
            +     G+NVIGC+WV+KIKR ADG++ RYKARLVAKG+ Q  G+D+ D FSPVVK  T 
Sbjct: 959  LVPYEKGQNVIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATI 1018

Query: 1504 RLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYG 1325
            R+IL+IA+S+GW LRQ+DV NAFLHG L++  E+YM+QPPGFE       VCKL KALYG
Sbjct: 1019 RIILSIAVSRGWSLRQLDVQNAFLHGFLEE--EVYMQQPPGFESFSKPNYVCKLDKALYG 1076

Query: 1324 LKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVT 1145
            LKQA +AW+ RL   L  LGF ASKAD SLF                   I  +++   T
Sbjct: 1077 LKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIIASSTEKATT 1136

Query: 1144 SLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXX 965
            +L+  LN  F +KDLG LHYFLG+E+    +G++L+Q++YA DLL++V M+  +      
Sbjct: 1137 ALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPL 1196

Query: 964  XXXXXXSKFQGNP--SVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKA 791
                  + ++G+P    D   YR +VG+LQYLT+TRP+I ++VNK+ QF+  P   HW A
Sbjct: 1197 SVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTA 1256

Query: 790  MKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSS 611
            +KR+LRY++    LGL + KS    V G+SD+DWA   DDRKST G+ +F+G NL+SWS+
Sbjct: 1257 VKRILRYLNQCTSLGLNIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSA 1316

Query: 610  KKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPI 431
            +KQ TVSRSS+EAEY+++ +  +E++W+QTLL EL + S +   IW DNL   ++SANP+
Sbjct: 1317 RKQPTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPV 1376

Query: 430  IQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSAL 251
              ARTKH+E+D HF+RE+V  K + +  +P+ DQ+AD  TK L  +     ++ LN++ L
Sbjct: 1377 FHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSVRLLEHFKHNLNLTRL 1436


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  516 bits (1328), Expect = e-143
 Identities = 257/540 (47%), Positives = 355/540 (65%), Gaps = 9/540 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVY-------GAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWT 1685
            TR ++GI K KVY       G F     EP N +EAL D  W++AM  EY AL KN TW 
Sbjct: 909  TRLRSGIRKEKVYTDGTVKYGCFSSTG-EPQNDKEALGDKNWRDAMETEYNALIKNDTWH 967

Query: 1684 ITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTA 1505
            +     G+N+IGC+WV+KIKR ADG++ RYKARLVAKG+ Q  G+D+ D FSPVVK  T 
Sbjct: 968  LVPYEKGQNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATI 1027

Query: 1504 RLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYG 1325
            R+IL+IA+S+GW LRQ+DV NAFLHG L++  E+YM+QPPGFE +     VCKL KALYG
Sbjct: 1028 RIILSIAVSRGWSLRQLDVQNAFLHGFLEE--EVYMQQPPGFESSSKPDYVCKLDKALYG 1085

Query: 1324 LKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVT 1145
            LKQA +AW+ RL   L  LGF ASKAD SLF                   +  +++   T
Sbjct: 1086 LKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDDIIVASSTEKATT 1145

Query: 1144 SLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXX 965
            +L+  LN  F +KDLG LHYFLG+E+    +G++L+Q++YA DLL++V M+  +      
Sbjct: 1146 ALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPL 1205

Query: 964  XXXXXXSKFQGNP--SVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKA 791
                  + ++G+P    D   YR +VG+LQYLT+TRP+I ++VNK+ QF+  P   HW A
Sbjct: 1206 SVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIA 1265

Query: 790  MKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSS 611
            +KR+LRY++    LGL + KS    V G+SD+DWA   DDRKST G+ +F+G NL+SWS+
Sbjct: 1266 VKRILRYLNQCTSLGLHIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSA 1325

Query: 610  KKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPI 431
            +KQ TVSRSS+EAEY+++ +  +E++W+QTLL EL + S +   IW DNL   ++SANP+
Sbjct: 1326 RKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGAKYLSANPV 1385

Query: 430  IQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSAL 251
              ARTKH+E+D HF+RE+V  K + +  +P+ DQ+AD  TK L        ++ LN++ L
Sbjct: 1386 FHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLLENFKHNLNLARL 1445


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  513 bits (1320), Expect = e-142
 Identities = 259/538 (48%), Positives = 355/538 (65%), Gaps = 10/538 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYG--------AFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTW 1688
            TR ++G+ K KVY         ++  A  EP N  EAL D  WK AM  EY+AL KNKTW
Sbjct: 915  TRLQSGVRKEKVYTDGTIKYKHSWFTASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTW 974

Query: 1687 TITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTT 1508
             +     GRN+IGC+WV+KIKR ADG++ RYKARLVAKG+ Q  G+D+ D FSPVVK  T
Sbjct: 975  HLVPPQRGRNIIGCKWVYKIKRKADGTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 1034

Query: 1507 ARLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALY 1328
             R+IL++A+SKGW LRQ+DV NAFLHG L++  E+YM QPPGFE     + VCKL KALY
Sbjct: 1035 IRIILSLAVSKGWSLRQLDVQNAFLHGYLEE--EVYMLQPPGFEDPTKPHHVCKLDKALY 1092

Query: 1327 GLKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQV 1148
            GLKQA +AWF RL   L  LGF+ SK D SLF     +             +  +S+   
Sbjct: 1093 GLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLVYVDDIIVASSSEKAT 1152

Query: 1147 TSLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXX 968
             +L+  L   F +KDLG+LHYFLG+E+   ++G++L+Q +YA DLL+KV M   +     
Sbjct: 1153 AALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTP 1212

Query: 967  XXXXXXXSKFQGN--PSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWK 794
                   S  +G+     D   YR VVG+LQYLT+TRP+I F+VNK+ QF+  P  +HW 
Sbjct: 1213 LSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWI 1272

Query: 793  AMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWS 614
            A+KR+LRY+     LGL++ KS    V+GFSD+DWA   DDR+ST G+ IF+G NL+SW+
Sbjct: 1273 AVKRILRYLKQCTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWN 1332

Query: 613  SKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANP 434
            ++KQ TVSRSS+E+EY+++ +A +E++W+QTLLAEL ++S +   IW DNL   ++SANP
Sbjct: 1333 ARKQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANP 1392

Query: 433  IIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 260
            +  ARTKH+E+D HF+RE+V  K + +  +  +DQ+AD  TKPL  +     ++ LN+
Sbjct: 1393 VFHARTKHIEVDYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLSVRLLENFKSNLNL 1450


>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
          Length = 1271

 Score =  511 bits (1316), Expect = e-142
 Identities = 258/539 (47%), Positives = 355/539 (65%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLPPG 1664
            TR+K GI K KVY  F     EP    +A+ D+ W  AM KE+ ALQ+N TW +   P  
Sbjct: 692  TRAKNGISKKKVY--FSSHISEPTTFTQAVKDSNWVLAMEKEFSALQRNNTWHLVPPPSN 749

Query: 1663 RNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILTIA 1484
             N+IGC+WV+K+K   DG+V RYKARLVA+G+TQ  G+++ + FSPVVK +T R+IL +A
Sbjct: 750  GNIIGCKWVYKLKYKPDGTVDRYKARLVAQGFTQTLGLBYFETFSPVVKASTIRIILAVA 809

Query: 1483 LSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQASKA 1304
            LS  W + Q+DV NAFLHG  D +  ++M+QPPGF  ++    VCKL+KALYGLKQA +A
Sbjct: 810  LSFNWSVHQLDVQNAFLHG--DLEEHVFMQQPPGFINSQYPSHVCKLNKALYGLKQAPRA 867

Query: 1303 WFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVTSLIDALN 1124
            W+ +L   L   GF+AS+AD+S+FI  S +             +TG+S  QV+S I  LN
Sbjct: 868  WYNKLSTSLLGWGFQASRADSSMFIHHSTHDVLILLIYVDDILVTGSSSAQVSSFITRLN 927

Query: 1123 HFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXXXXXXXS 944
              F ++DLG ++YFLG+E+  +     LSQ +Y QDLL +  M  S+            S
Sbjct: 928  SSFALRDLGYVNYFLGIEVVRSGTMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLGQTLS 987

Query: 943  KFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLRYIS 764
               G P  D  LYR  VG+LQYLT+TRP+I+FAVNK  QFM  P   HW A+KR+LRY+ 
Sbjct: 988  HLDGEPFSDATLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKRILRYLK 1047

Query: 763  GTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQHTVSRS 584
            GTL  G+Q+ +S  L + G++D+DWAS PDDR+ST GY IF+G NL+SWSS KQ  VSRS
Sbjct: 1048 GTLSYGIQMQQSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVSRS 1107

Query: 583  SSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQARTKHVE 404
            S+E+EYR+L  A SE++W+Q +L EL L S+ PP++W DN S   ++ANP+  ARTKH+E
Sbjct: 1108 SAESEYRALASATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHARTKHIE 1167

Query: 403  IDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSALSSLELTGD 227
            +DLHFIR+ V  K +++ ++P+++Q+AD  TK +    F   R +L+V   S + L GD
Sbjct: 1168 MDLHFIRDHVLRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSV-VPSPVSLRGD 1225


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  507 bits (1306), Expect = e-141
 Identities = 255/537 (47%), Positives = 357/537 (66%), Gaps = 8/537 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYG------AFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTI 1682
            TR ++GI K K+Y       +   +  EP  + EAL D  WKEAM  EY+AL KNKTW  
Sbjct: 496  TRLQSGIRKEKIYTDGTVRYSCFTSSGEPQTLHEALGDKNWKEAMDSEYQALMKNKTWHR 555

Query: 1681 TNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTAR 1502
                 G+N+I C+WV+K+KR ADGS+ RYKARLVAKG+ Q  G+D+ D F PVVK  T R
Sbjct: 556  VPSKKGQNIIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFRPVVKAATIR 615

Query: 1501 LILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGL 1322
             IL+IA+S+GW LRQ+DV NAFLHG+L++DV  +M QPPG+E  K+ Y VCKL KALYGL
Sbjct: 616  TILSIAISRGWTLRQLDVQNAFLHGVLEEDV--FMRQPPGYE-QKDGY-VCKLDKALYGL 671

Query: 1321 KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVTS 1142
            KQA +AW+ RL   L  LGF++SK+D SLF     +             +  +S +   +
Sbjct: 672  KQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVTIFMLVYVDDIIVASSSIVATNA 731

Query: 1141 LIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXX 962
            L+  LN  F +KDLG+LHYFLG+E+    DG++L+Q++YA D+L++V M+  +       
Sbjct: 732  LLKNLNQEFALKDLGRLHYFLGIEVKEVNDGIVLTQEKYAMDVLKRVNMSDCKAVNTPLS 791

Query: 961  XXXXXSKFQGNP--SVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAM 788
                 S  +GNP    D   YR +VG+LQYLT+TRP+++F+VNK+ Q++      HW A 
Sbjct: 792  ISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAATTKHWVAA 851

Query: 787  KRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSK 608
            KR+LRY+  T+ LGL++ KS  L V+ FSD+DWA   DDR+ST G+ +F+G NL+SWS++
Sbjct: 852  KRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIGPNLVSWSAR 911

Query: 607  KQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPII 428
            KQ TVSRSS+EAEY++L +A +E++W+QTLL EL ++  +   +W DN+   +M+ANP+ 
Sbjct: 912  KQATVSRSSTEAEYKALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGAKYMTANPVF 971

Query: 427  QARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVS 257
             ARTKH+E+D HF+RE+V  K + V +I   DQ+AD  TK L  +     RN LN++
Sbjct: 972  HARTKHIEVDYHFVRERVARKLLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNLT 1028


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  506 bits (1304), Expect = e-140
 Identities = 253/537 (47%), Positives = 358/537 (66%), Gaps = 8/537 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYG------AFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTI 1682
            TR ++GI K K+Y       +   +  EP  + EAL D  WKEAM  EY+AL KNKTW +
Sbjct: 896  TRLQSGIRKEKIYTDGTVRYSCFTSSGEPQTLHEALGDKNWKEAMDSEYQALMKNKTWHL 955

Query: 1681 TNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTAR 1502
                 G+N+I C+WV+K+KR ADGS+ RYKAR+VAKG+ Q  G+D+ D F+PVVK  T R
Sbjct: 956  VPSKKGQNIIDCKWVYKVKRKADGSLDRYKARVVAKGFKQRYGIDYEDTFNPVVKAATIR 1015

Query: 1501 LILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGL 1322
             IL+IA+S+GW LRQ+DV NAFLHG+L++DV  +M QPPG+E  K+ Y VCKL KALYGL
Sbjct: 1016 TILSIAISRGWTLRQLDVQNAFLHGVLEEDV--FMRQPPGYE-QKDGY-VCKLDKALYGL 1071

Query: 1321 KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVTS 1142
            KQA +AW+ RL   L  LGF++SK+D SLF     +             +  +S     +
Sbjct: 1072 KQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDIIVASSSIDATNA 1131

Query: 1141 LIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXX 962
            L+  LN  F +KDLG+LHYFLG+E+    +G++L+Q++YA D+L++V M+  +       
Sbjct: 1132 LLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSDCKAVNTPLS 1191

Query: 961  XXXXXSKFQGNP--SVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAM 788
                 S  +GNP    D   YR +VG+LQYLT+TRP+++F+VNK+ Q++  P   HW A 
Sbjct: 1192 ISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHAPTTKHWAAA 1251

Query: 787  KRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSK 608
            KR+LRY+  T+ LGL++ KS  L V+ FSD+DWA   DDR ST G+ +F+G NL+SWS++
Sbjct: 1252 KRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIGPNLVSWSAR 1311

Query: 607  KQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPII 428
            KQ TVSRSS+EAEY++L +  +E++W+QTLL EL +++ +   +W DN+   +M+ANP+ 
Sbjct: 1312 KQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGAKYMTANPVF 1371

Query: 427  QARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVS 257
             ARTKH+E+D HF+RE+V  K + V +I   DQ+AD  TK L  +     RN LN++
Sbjct: 1372 HARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVRQLEMFRNNLNLT 1428


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  505 bits (1301), Expect = e-140
 Identities = 255/530 (48%), Positives = 350/530 (66%), Gaps = 2/530 (0%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLPPG 1664
            TR ++GI K K             +++EA+ +  WKEAM  EY AL +NKTW +     G
Sbjct: 876  TRLQSGIRKEK-------------SLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKG 922

Query: 1663 RNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILTIA 1484
            RNVI C+WV+K+KR ADGS+ RYKARLVAKG+ Q  G+D+ D FSPVVK  T R++L++A
Sbjct: 923  RNVIDCKWVYKVKRKADGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLA 982

Query: 1483 LSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQASKA 1304
            +S+GW LRQ+DV NAFLHG+L++  E+YM+QPPG+E       VCKL KALYGLKQA +A
Sbjct: 983  VSRGWSLRQLDVKNAFLHGVLEE--EVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRA 1040

Query: 1303 WFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVTSLIDALN 1124
            W+ RL   LS LGF  SKAD SLF                   +  +     ++L+  L+
Sbjct: 1041 WYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIVASSVPDATSTLLQELS 1100

Query: 1123 HFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXXXXXXXS 944
              F +KDLG LHYFLG+E+H  KDG++LSQ++YA DLLR+V M   +            S
Sbjct: 1101 KDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLS 1160

Query: 943  KFQGN--PSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLRY 770
              +G      D   YR VVG+LQYLT+TRP+I+F++NK+ QF+  P   HW A+KR+LRY
Sbjct: 1161 VNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRY 1220

Query: 769  ISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQHTVS 590
            +  T+D GL+  ++P L V+GFSD+DWA  PDDR+ST G+ +F+G NL+SWS++KQ TVS
Sbjct: 1221 VKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVS 1280

Query: 589  RSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQARTKH 410
            RSS EAEY++L +A +E++W+QTLL EL + S +   +W DNL   ++SANPI  ARTKH
Sbjct: 1281 RSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKH 1340

Query: 409  VEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 260
            +E+D HF+RE+V  K + + +I   DQ+AD  TK +  +     +N LN+
Sbjct: 1341 IEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 1390


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  505 bits (1300), Expect = e-140
 Identities = 248/540 (45%), Positives = 354/540 (65%), Gaps = 9/540 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVY-------GAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWT 1685
            TR ++GI K KVY       G F     EP N +EAL D  W++AM  EY AL KN TW 
Sbjct: 912  TRLRSGIRKEKVYTNGTVKYGCFSSTG-EPQNDKEALGDKNWRDAMETEYNALIKNDTWH 970

Query: 1684 ITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTA 1505
            +     G+N+IGC+WV+K+KR ADG++ RYK RL+AKG+ Q  G+D+ D FSPVVK  T 
Sbjct: 971  LVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGIDYEDTFSPVVKAATI 1030

Query: 1504 RLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYG 1325
            R+IL+IA+S+GW LRQ+DV N FLHG L++  E+YM+QPPGFE +     VCKL+KALYG
Sbjct: 1031 RIILSIAVSRGWSLRQLDVQNDFLHGFLEE--EVYMQQPPGFESSSKPDYVCKLNKALYG 1088

Query: 1324 LKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVT 1145
            LKQA +AW+ RL   L+ LGF ASKAD SLF                   +  +++   T
Sbjct: 1089 LKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIVASSTEKATT 1148

Query: 1144 SLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXX 965
            +L+  LN  F +KDLG LHYFLG+E+    +G++L+Q++YA D+L++V M+  +      
Sbjct: 1149 ALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCKPVSTPL 1208

Query: 964  XXXXXXSKFQGNP--SVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKA 791
                  + ++G+P    D   YR +VG+LQYLT+TRP+I ++VNK+ QF+  P   HW A
Sbjct: 1209 SVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIA 1268

Query: 790  MKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSS 611
            +KR+LRY++    LGL + KS    V G+SD+D A   DDRKST G+ +F+G NL+SWS+
Sbjct: 1269 VKRILRYLNQCTSLGLHVHKSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSA 1328

Query: 610  KKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPI 431
            +KQ TVSRSS+EAEY+++ +  +E++W+QT+L EL + S +   IW DNL   ++SANP+
Sbjct: 1329 RKQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPV 1388

Query: 430  IQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSAL 251
              A+TKH+ +D HF+RE+V  K + +  +P+ DQ+AD  TK L  +     ++ LN++ L
Sbjct: 1389 FHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSARLLENFKHNLNLTRL 1448


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  504 bits (1297), Expect = e-140
 Identities = 258/541 (47%), Positives = 349/541 (64%), Gaps = 10/541 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYG--------AFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTW 1688
            TR ++GI K KVY          F+    EP N+ +AL DN WK+AM  E+ ALQ NKTW
Sbjct: 709  TRLQSGIRKEKVYTDGTVKYRTTFLTVTGEPENLDDALKDNNWKKAMDAEFMALQNNKTW 768

Query: 1687 TITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTT 1508
             +     GRNVI C+WV+KIKR  DGS+ RYKARLVAKG+ Q  G+D+ D FSPVVK  T
Sbjct: 769  HLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 828

Query: 1507 ARLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALY 1328
             R+IL+IA+SKGW +RQ+DV NAFLHG+L++  E+YM+QPPG+E +     VCKL KALY
Sbjct: 829  IRIILSIAVSKGWCMRQLDVQNAFLHGVLEE--EVYMKQPPGYEDSSLPGYVCKLDKALY 886

Query: 1327 GLKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQV 1148
            GLKQA +AW+ RL   L  +GF+ SKAD SLF     +             +T +    V
Sbjct: 887  GLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEAV 946

Query: 1147 TSLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXX 968
             +L+  L   F +KDLG LHYFLG+E+     G++L+Q +Y  DLLR+V M   +     
Sbjct: 947  PALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVSTP 1006

Query: 967  XXXXXXXSKFQGNP--SVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWK 794
                   S  +G+P    D   YR VVG+LQYLT+TRP+I F VNK+ QF+  P   HW 
Sbjct: 1007 LSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWA 1066

Query: 793  AMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWS 614
            A+KR+LRY+     LGL+L KS  + V+ +SD+DWA   DDR+ST G+ +F+G NL+SWS
Sbjct: 1067 AVKRILRYLKQCTRLGLKLSKSRSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWS 1126

Query: 613  SKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANP 434
            ++KQ TVSRSS+E+EY++L +A +E++W+QTLLAEL + S     +W DNL   ++SANP
Sbjct: 1127 ARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMAKLWCDNLGAKYLSANP 1186

Query: 433  IIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSA 254
            +  ARTKH+E+D HF+RE+V  K + +  +P  DQ+AD  TK L  +     +  LN+  
Sbjct: 1187 VFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKALSVRQLENFKYNLNLGK 1246

Query: 253  L 251
            L
Sbjct: 1247 L 1247


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  501 bits (1289), Expect = e-139
 Identities = 259/547 (47%), Positives = 353/547 (64%), Gaps = 19/547 (3%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVY-------GAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWT 1685
            TRS+ G+ +PK Y       G   +   EP+++QEAL    WK+AM KE+ AL  NKTW 
Sbjct: 356  TRSQHGVHRPKKYTDGTVRYGCLTETG-EPSSLQEALSSANWKQAMDKEFSALLHNKTWH 414

Query: 1684 ITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTA 1505
            +     G+N+I  +WV+KIK+ ADG++ RYKARLVAKG+ Q  G+D+ D FSPVVK  T 
Sbjct: 415  LVPPVKGKNIIDSKWVYKIKKKADGTIDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATI 474

Query: 1504 RLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYG 1325
            RL+L+IA+S+GW LRQ+DV NAFLHG LD+  E+YM QPPGFE  +  + +CKL KALYG
Sbjct: 475  RLVLSIAMSQGWSLRQLDVQNAFLHGYLDE--EVYMRQPPGFEDARQPHFLCKLDKALYG 532

Query: 1324 LKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVT 1145
            LKQA +AW+ RL   L  LGF +SKAD SLF     +             +  +S   V 
Sbjct: 533  LKQAPRAWYSRLSKKLQELGFSSSKADTSLFFYNKGHHKMFVLVYVDDIIVASSSSPAVN 592

Query: 1144 SLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXX 965
            +L+  L   F +KDLG LHYFLG+E+  T   +LLSQ+RY  +LL +V MT  +      
Sbjct: 593  ALLKDLEKDFALKDLGDLHYFLGIEVKRTPQTLLLSQERYTTELLERVNMTSCKPVSTPL 652

Query: 964  XXXXXXSKFQGN---PSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWK 794
                  S   G+   PS D   YR +VG+LQYLT+TRP+I+++VNK+ QF+Q P   HW 
Sbjct: 653  STAEKLSVEIGDELGPS-DVTQYRSIVGALQYLTLTRPDISYSVNKVCQFLQTPTTAHWS 711

Query: 793  AMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPD---------DRKSTSGYCIF 641
            A+KR+LRY+ GTLDLGL++ KS    V+ FSD+DWA   D         DR+ST G+ +F
Sbjct: 712  AVKRILRYLKGTLDLGLKIVKSSSNLVSAFSDADWAGSVDDRRSTGGFADRRSTGGFAVF 771

Query: 640  VGKNLISWSSKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNL 461
             G NLISWS++KQ TVSRSS+EAEY++L +A +E++W++ LL EL +       +W DNL
Sbjct: 772  FGDNLISWSARKQATVSRSSTEAEYKALANAAAEIIWVRKLLTELGILHPNAARLWCDNL 831

Query: 460  STVFMSANPIIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTR 281
               +M+ANP+  ARTKH+E+D HF+RE+V  K + +H + + DQ+AD  TKP+  Q    
Sbjct: 832  GATYMTANPVFHARTKHIEVDYHFVREQVAQKLLDIHFVSSQDQVADGFTKPISLQQLIG 891

Query: 280  MRNRLNV 260
             R+ LN+
Sbjct: 892  FRHNLNL 898


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  500 bits (1288), Expect = e-139
 Identities = 247/540 (45%), Positives = 352/540 (65%), Gaps = 9/540 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVY-------GAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWT 1685
            TR ++GI K KVY       G F     EP N +EAL D  W++AM  EY AL KN TW 
Sbjct: 912  TRLRSGIRKEKVYTNGTVKYGCFSSTG-EPQNDKEALGDKNWRDAMETEYNALIKNDTWH 970

Query: 1684 ITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTA 1505
            +     G+N+IGC+WV+K+KR ADG++ RYK RL+AKG+ Q  G+D+ D FSPVVK  T 
Sbjct: 971  LVPYEKGQNIIGCKWVYKVKRKADGTLDRYKTRLIAKGFKQRYGIDYEDTFSPVVKAATI 1030

Query: 1504 RLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYG 1325
            R+IL+IA+S+GW LRQ+DV N FL G L++  E+YM+QPPGFE +  R  VCKL+KALYG
Sbjct: 1031 RIILSIAVSRGWNLRQLDVQNDFLRGFLEE--EVYMQQPPGFESSSKRDYVCKLNKALYG 1088

Query: 1324 LKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVT 1145
            LKQA +AW+ RL   L+ LGF ASKAD SLF                   +  +++   T
Sbjct: 1089 LKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIVASSTEKATT 1148

Query: 1144 SLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXX 965
            +L+  LN  F +KDLG LHYFLG+E+    +G++L+Q++YA D+L++V M+         
Sbjct: 1149 ALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCTPVSTPL 1208

Query: 964  XXXXXXSKFQGNP--SVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKA 791
                  + ++G+P    D   YR +VG+LQYLT+TRP+I ++VNK+ QF+  P   HW A
Sbjct: 1209 SVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHAPTTSHWIA 1268

Query: 790  MKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSS 611
            +KR+LRY++     GL + KS    V G+SD+D A   DDRKST G+ +F+G NL+SWS+
Sbjct: 1269 VKRILRYLNQCTSPGLHVHKSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSA 1328

Query: 610  KKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPI 431
            +KQ TVSRSS+EAEY+++ +  +E++W+QT+L EL + S +   IW DNL   ++SANP+
Sbjct: 1329 RKQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIWCDNLGAKYLSANPV 1388

Query: 430  IQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSAL 251
              A+TKH+ +D HF+RE+V  K + +  +P+ DQ+AD  TK L  +     ++ LN++ L
Sbjct: 1389 FHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSARLLENFKHNLNLTRL 1448


>ref|XP_006465491.1| PREDICTED: uncharacterized protein LOC102624640 [Citrus sinensis]
          Length = 1682

 Score =  498 bits (1281), Expect = e-138
 Identities = 260/530 (49%), Positives = 348/530 (65%), Gaps = 2/530 (0%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVY-GAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLPP 1667
            TRSKAGIFKPK +  A +    EP +V  AL D +W +AM +E++ALQ N TW +     
Sbjct: 301  TRSKAGIFKPKSFLAALLAIPSEPTSVSAALSDPKWFKAMQEEFQALQNNHTWDLVLPSE 360

Query: 1666 GRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILTI 1487
               V+G +W+FKIK +ADG++SRYKARLVAKG+ Q  GVD+T+ FSPVVK +T R+IL++
Sbjct: 361  PIKVVGNKWIFKIKYHADGTISRYKARLVAKGFHQTQGVDYTETFSPVVKASTVRVILSL 420

Query: 1486 ALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGLKQASK 1307
            A+   W LRQVDV+NAFL+G+L +DV  YM QP GF        VCKL KALYGLKQA +
Sbjct: 421  AVMNKWELRQVDVNNAFLNGILVEDV--YMGQPEGFIDPSRPLHVCKLKKALYGLKQAPR 478

Query: 1306 AWFERLQNVLS-SLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVTSLIDA 1130
            AWFERL++ +    GF+ S++D SLF +   +             ITG+SD  V  +I  
Sbjct: 479  AWFERLKDAMVVKWGFQNSRSDNSLFYKWIGDQVIFVLVYVDDIIITGSSDKMVQQVITN 538

Query: 1129 LNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXXXXXX 950
            + + F +KDLGKL YFLG+E+  T  G+ LSQ +Y  D+L K  M               
Sbjct: 539  MQNAFALKDLGKLSYFLGIEVTKTASGIYLSQSKYIADILAKHNMADCSPVPTPMATGHY 598

Query: 949  XSKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLRY 770
             +K  G+   +   Y+  VG+LQY+T+TRPEI F+VNKLSQF+ +P   HW++ KRLLRY
Sbjct: 599  LTKGSGSVISNSSQYKSAVGALQYVTLTRPEIAFSVNKLSQFLASPTAEHWESCKRLLRY 658

Query: 769  ISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQHTVS 590
            + GT+  GL  +    + +  FSDSDWA D DDRKS +GY +++G NL+SWSSKKQ  VS
Sbjct: 659  LKGTIHFGLHFYHYGTMQINCFSDSDWACDKDDRKSVAGYAVYLGSNLVSWSSKKQAVVS 718

Query: 589  RSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQARTKH 410
            RSS+EAEYR+L  A +EV W+Q+LL ELH+     P++W DN S + ++ NP+  A+TKH
Sbjct: 719  RSSTEAEYRALAQATAEVTWIQSLLKELHIHLVTAPIMWCDNQSAIALAHNPVYHAKTKH 778

Query: 409  VEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 260
            VE+D+HFIR+KV  K I V  IP+ DQ AD LTK L    F  +R++LNV
Sbjct: 779  VELDIHFIRDKVTAKQITVQFIPSEDQNADVLTKALTFNQFHYLRSKLNV 828


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  498 bits (1281), Expect = e-138
 Identities = 252/541 (46%), Positives = 347/541 (64%), Gaps = 10/541 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVY--------GAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTW 1688
            TR + GI K KVY          F+    EP N+ +AL +  WK+AM  EYEAL  NKTW
Sbjct: 909  TRLQRGIRKEKVYTDGTVKYKNTFLTVTGEPKNLTDALQNTNWKKAMDIEYEALMNNKTW 968

Query: 1687 TITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTT 1508
             +     GRNVI C+WV+KIKR  DGS+ RYKARLVAKG+ Q  G+D+ D FSPVVK  T
Sbjct: 969  HLVPPKQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAAT 1028

Query: 1507 ARLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALY 1328
             R++L+IA+S+GW +RQ+DV NAFLHG L++  E+YM+QPPG+E       VCKL KALY
Sbjct: 1029 IRIVLSIAVSRGWCMRQLDVQNAFLHGFLEE--EVYMKQPPGYEDESFPGYVCKLDKALY 1086

Query: 1327 GLKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQV 1148
            GLKQA +AW+ RL   L  LGF+ SK D SLF                   +T +    V
Sbjct: 1087 GLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDDIIVTSSRQEAV 1146

Query: 1147 TSLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXX 968
            ++L+  L   F +KDLG LHYFLG+E++   D ++L+Q +YA DLLR+V M   +     
Sbjct: 1147 SALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLLRRVNMFDCKPVSTP 1206

Query: 967  XXXXXXXSKFQGN--PSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWK 794
                   S  +G+    +D   YR VVG+LQYLT+TRP+I F VNK+ QF+  P  +HW 
Sbjct: 1207 LSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWA 1266

Query: 793  AMKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWS 614
            A+KR+LRY+     LGL+L KS  + V+ +SD+DWA   DDR+ST G+ +F+G NL+SW 
Sbjct: 1267 AVKRILRYLKQCTKLGLKLCKSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVSWC 1326

Query: 613  SKKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANP 434
            ++KQ TVSRSS+E+EY++L +A +E++W+QTLL EL ++S     +W DNL   ++S+NP
Sbjct: 1327 ARKQATVSRSSTESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGAKYLSSNP 1386

Query: 433  IIQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNVSA 254
            +  ARTKH+E+D HF+RE+V  K + +  +P  DQ+AD  TK L  +     ++ LN+  
Sbjct: 1387 VFHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTKALPVRQLENFKHNLNLGR 1446

Query: 253  L 251
            L
Sbjct: 1447 L 1447


>emb|CAN63482.1| hypothetical protein VITISV_011510 [Vitis vinifera]
          Length = 1124

 Score =  494 bits (1273), Expect = e-137
 Identities = 250/487 (51%), Positives = 333/487 (68%), Gaps = 2/487 (0%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTITNLPPG 1664
            TRSK GIFKPKVY   ++ + EPN  QE +   +WKEAM +E+ AL KNKTW++ +LP  
Sbjct: 479  TRSKNGIFKPKVYTIDLNVE-EPNTFQETISHPKWKEAMDEEFRALMKNKTWSLVSLPSN 537

Query: 1663 RNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTARLILTIA 1484
            R  +GC+WVFK+KRN DGSVSRYKARLVAKGY Q+   DF+  FS VVKPTT R++L +A
Sbjct: 538  RTSVGCKWVFKLKRNPDGSVSRYKARLVAKGYFQVPSFDFSKTFSLVVKPTTIRVVLAVA 597

Query: 1483 LSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQ--VCKLHKALYGLKQAS 1310
            +S+ W +R +DV+NAFL+G L +  E+YM+Q PGF+   N+ Q  VCKLHK LYGLKQA 
Sbjct: 598  VSQSWSIRXLDVNNAFLNGELQE--EVYMDQXPGFDGRTNQEQKLVCKLHKTLYGLKQAP 655

Query: 1309 KAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVTSLIDA 1130
            +AWF++L+  L   GF ++K+D SLF+R +  S            +TG+S  ++  LI  
Sbjct: 656  RAWFDKLKISLQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVVTGSSSQEIHELISR 715

Query: 1129 LNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXXXXXX 950
            L+  F +KDL                G+ LS+K+Y QDLL+K +M G++           
Sbjct: 716  LSGLFSLKDLD--------------GGLHLSKKKYIQDLLKKTKMDGAKSLPTLMLSGLK 761

Query: 949  XSKFQGNPSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKAMKRLLRY 770
                 G+P  +   YR VVG+LQY+TITRPEI F+VNK+ QFMQ PLD HWK +KR+LRY
Sbjct: 762  LLTGTGDPIDNVFEYRSVVGALQYITITRPEIAFSVNKVCQFMQKPLDTHWKTVKRILRY 821

Query: 769  ISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSSKKQHTVS 590
            ++GT DLG+ L  S  +++ GF D DW SD DDR+STSG+C+F+G NL+SWSSKK HT+S
Sbjct: 822  LNGTTDLGIVLKPSETMNLVGFCDVDWGSDVDDRRSTSGHCVFLGXNLVSWSSKKLHTIS 881

Query: 589  RSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPIIQARTKH 410
            RSS+EAEYRSL    SE+LWLQ+LL+E   +      IW DN+STV +SANP + +RTKH
Sbjct: 882  RSSTEAEYRSLASLTSEMLWLQSLLSEFQTKMTMVSXIWCDNISTVSLSANPXLHSRTKH 941

Query: 409  VEIDLHF 389
            +E+DL+F
Sbjct: 942  MELDLYF 948


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  494 bits (1272), Expect = e-137
 Identities = 256/523 (48%), Positives = 347/523 (66%), Gaps = 9/523 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKV-------YGAFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWT 1685
            TR + GI KPK        YG       EP++V EAL D +W+ AM  E++ALQKN TWT
Sbjct: 896  TRLQHGISKPKQFTDGTVRYGNAAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWT 955

Query: 1684 ITNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTA 1505
            +      RN+I C+WVFK+K NADGS+ R KARLVAKG+ Q  G+D+ D FSPVVK +T 
Sbjct: 956  LVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPVVKHSTI 1015

Query: 1504 RLILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYG 1325
            RL+L++A+S+ W LRQ+DV NAFLHG+L++ V  YM+QPPGF    +    C L K+LYG
Sbjct: 1016 RLVLSLAVSQKWSLRQLDVQNAFLHGILEETV--YMKQPPGFADTTHPNYHCHLQKSLYG 1073

Query: 1324 LKQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVT 1145
            LKQ  +AW+ RL   L SLGF  SKAD SLFI  + ++            ITG+S   + 
Sbjct: 1074 LKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIIITGSSPHAID 1133

Query: 1144 SLIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXX 965
            +++  L   F IKDLG LHYFLG+E+H   DG+LL Q++YA+DLL++V M   +      
Sbjct: 1134 NVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRVGMECCKPVHTPV 1193

Query: 964  XXXXXXSKFQGN--PSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKA 791
                  S   G      +   YR VVG+LQYLT+TRP++++A+N++ QF+  P DLHW A
Sbjct: 1194 ATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLHAPTDLHWTA 1253

Query: 790  MKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSS 611
            +KR+LR I  T+ LGL +  S  L ++ FSD+DWA  PDDRKST GY +F+G NLISW+S
Sbjct: 1254 VKRILRNIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYALFLGPNLISWNS 1313

Query: 610  KKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPI 431
            KKQ TVSRSS+EAEY+++ +A +EV+WLQ+LL EL +R    P +W DNL   ++S+ PI
Sbjct: 1314 KKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLGATYLSSKPI 1373

Query: 430  IQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPL 302
              ARTKH+E+D HF+R++V +K + +  I  +DQ+AD  TK L
Sbjct: 1374 FNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKAL 1416


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  493 bits (1270), Expect = e-137
 Identities = 253/537 (47%), Positives = 350/537 (65%), Gaps = 9/537 (1%)
 Frame = -3

Query: 1843 TRSKAGIFKPKVYG------AFVDADVEPNNVQEALCDNRWKEAMAKEYEALQKNKTWTI 1682
            TR ++GI K KVY         + +  EP N+Q+AL +N WK AM  EY AL KN TW +
Sbjct: 895  TRLQSGIRKEKVYTDGTVKWGMLTSTGEPENLQDALQNNNWKCAMDAEYMALIKNNTWHL 954

Query: 1681 TNLPPGRNVIGCRWVFKIKRNADGSVSRYKARLVAKGYTQIAGVDFTDVFSPVVKPTTAR 1502
                 GRNVI C+WV+KIKR  DGS+ RYKARLVAKG+ Q  G+D+ D FSPVVK  T R
Sbjct: 955  VPPQQGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIR 1014

Query: 1501 LILTIALSKGWILRQVDVDNAFLHGLLDKDVEIYMEQPPGFEINKNRYQVCKLHKALYGL 1322
            +IL+IA+S+GW LRQ+DV NAFLHG+L++  E+YM+QPPG+E       VCKL KALYGL
Sbjct: 1015 IILSIAVSRGWCLRQLDVQNAFLHGVLEE--EVYMKQPPGYENPSTPDYVCKLDKALYGL 1072

Query: 1321 KQASKAWFERLQNVLSSLGFRASKADASLFIRVSPNSXXXXXXXXXXXXITGNSDLQVTS 1142
            KQA +AW+ RL   L  LGF+ SKAD SLF     +             +  +    V++
Sbjct: 1073 KQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDIIVVSSRKEAVSA 1132

Query: 1141 LIDALNHFFPIKDLGKLHYFLGVEIHYTKDGMLLSQKRYAQDLLRKVQMTGSRGXXXXXX 962
            L+  L   F +KDLG LHYFLG+E+     G+L+SQ++YA DLL++V M+  +       
Sbjct: 1133 LLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKRVNMSDCKSVATPLS 1192

Query: 961  XXXXXSKFQGN---PSVDGQLYRQVVGSLQYLTITRPEITFAVNKLSQFMQNPLDLHWKA 791
                    +G    P+ D   YR +VG+LQYLT+TR +I F+VNK+ QF+ NP   HW A
Sbjct: 1193 ASEKLIAGKGTILGPN-DATQYRSIVGALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAA 1251

Query: 790  MKRLLRYISGTLDLGLQLFKSPHLHVTGFSDSDWASDPDDRKSTSGYCIFVGKNLISWSS 611
            +KR+LRYI     LGL++ KS  + V+G+SD+DWA   DDR+ST G+ +++G NL+SW++
Sbjct: 1252 VKRILRYIKQCTGLGLRICKSSSMIVSGYSDADWAGCLDDRRSTGGFAVYLGDNLVSWNA 1311

Query: 610  KKQHTVSRSSSEAEYRSLGHAMSEVLWLQTLLAELHLRSNQPPVIWVDNLSTVFMSANPI 431
            KKQ TVSRSS+EAEY++L +A +E++W+QTLL EL++ S     +W DN+   ++S NP+
Sbjct: 1312 KKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKYLSFNPV 1371

Query: 430  IQARTKHVEIDLHFIREKVQNKTILVHHIPASDQIADALTKPLGGQFFTRMRNRLNV 260
              ARTKH+E+D HF+RE+V  K + V ++  +DQ+AD  TK L  +     +  LN+
Sbjct: 1372 FHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKALPVKQLENFKYNLNL 1428