BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00020260
         (474 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263694.1| PREDICTED: uncharacterized protein LOC100260...    83   4e-14
emb|CAN67263.1| hypothetical protein VITISV_022611 [Vitis vinifera]    83   4e-14
ref|XP_006490148.1| PREDICTED: DNA-directed RNA polymerase III s...    80   4e-13
ref|XP_006421620.1| hypothetical protein CICLE_v10005426mg [Citr...    80   4e-13
ref|XP_002510979.1| DNA binding protein, putative [Ricinus commu...    75   7e-12
ref|XP_004240014.1| PREDICTED: uncharacterized protein LOC101254...    72   1e-10
ref|XP_006355616.1| PREDICTED: DNA-directed RNA polymerase III s...    69   5e-10
gb|EOY30295.1| DNA-directed RNA polymerase III subunit RPC4, put...    68   1e-09
gb|EOY22841.1| DNA binding protein, putative isoform 2 [Theobrom...    67   2e-09
ref|XP_006362806.1| PREDICTED: uncharacterized protein LOC102600...    66   4e-09
ref|XP_006428587.1| hypothetical protein CICLE_v10012311mg [Citr...    63   5e-08
ref|XP_002278210.2| PREDICTED: uncharacterized protein LOC100256...    63   5e-08
ref|XP_004144123.1| PREDICTED: uncharacterized protein LOC101209...    62   8e-08
ref|NP_196500.1| RNA polymerase III RPC4 [Arabidopsis thaliana] ...    62   1e-07
ref|XP_004514516.1| PREDICTED: DNA-directed RNA polymerase III s...    60   4e-07
ref|XP_004514515.1| PREDICTED: DNA-directed RNA polymerase III s...    60   4e-07
ref|XP_004495578.1| PREDICTED: DNA-directed RNA polymerase III s...    60   4e-07
ref|XP_006288444.1| hypothetical protein CARUB_v10001705mg [Caps...    59   5e-07
ref|XP_002873399.1| DNA-directed RNA polymerase III RPC4 family ...    59   7e-07
ref|XP_002516293.1| DNA binding protein, putative [Ricinus commu...    58   1e-06

>ref|XP_002263694.1| PREDICTED: uncharacterized protein LOC100260717 [Vitis vinifera]
           gi|297745083|emb|CBI38675.3| unnamed protein product
           [Vitis vinifera]
          Length = 348

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 66/167 (39%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
 Frame = +3

Query: 24  DSDRPAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRTKTE 203
           +S   +PRKVRFAPK+PPRR  K                  Q L R VNE L R   K E
Sbjct: 5   ESSSVSPRKVRFAPKSPPRRKPKTTAPQPVVAEEEDEAKRAQYLLRRVNEKLRRQGPKVE 64

Query: 204 KKSSEQVAFD-GAATTGG-IRTFGKQKERTDASKSKG------TVDSTE--------TLD 335
           K SS QV F  GAAT    IRTFG  ++  ++ KS G      T D  E        T  
Sbjct: 65  KTSSVQVVFGPGAATPSDTIRTFGVHRDG-NSDKSSGMELKVSTPDHEEIAVSSPSTTKP 123

Query: 336 DEQNLXXXXXXXXXXXXXXXXXXNSDY-NSYYPTTIPFRRPNSGDPE 473
           DE N                     DY +SYYPTT+P R+P+SGDPE
Sbjct: 124 DETNGYFADATDDSAQIRKRYKEPWDYVHSYYPTTLPLRKPHSGDPE 170


>emb|CAN67263.1| hypothetical protein VITISV_022611 [Vitis vinifera]
          Length = 348

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 67/167 (40%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
 Frame = +3

Query: 24  DSDRPAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRTKTE 203
           +S   +PRKVRFAPK+PPRR  K                  Q L R VNE L R   K E
Sbjct: 5   ESSSVSPRKVRFAPKSPPRRKPKTTAPQPVVAEEEDEAKRAQYLLRRVNEKLRRQGPKVE 64

Query: 204 KKSSEQVAFD-GAATTGG-IRTFGKQKERTDASKSKG------TVDSTE--------TLD 335
           K SS QV F  GAAT    IRTFG  ++  ++ KS G      T D  E        T  
Sbjct: 65  KTSSVQVVFGPGAATPSDTIRTFGVHRDG-NSDKSSGMELKVSTPDHEEIAVSSXSTTKP 123

Query: 336 DEQNLXXXXXXXXXXXXXXXXXXNSDY-NSYYPTTIPFRRPNSGDPE 473
           DE N                     DY +SYYPTT+P R+P+SGDPE
Sbjct: 124 DETNGXFADATDDSAQIRKRYKEPWDYVHSYYPTTLPLRKPHSGDPE 170


>ref|XP_006490148.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           [Citrus sinensis]
          Length = 324

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 22/172 (12%)
 Frame = +3

Query: 24  DSDRPAP--RKVRFAPKAPPRRN----TKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTR 185
           D D+P+   RKVRFAPKAPP       T P  +              Q L R+ NE   R
Sbjct: 4   DPDKPSGSGRKVRFAPKAPPPSRQPKVTAPTPVPRPESKHEDPEAEAQRLLRQFNEANAR 63

Query: 186 GRTKTEKKSSEQVAFD-GAATTGGIRTFGKQKERTDASKSKGT----VDSTE-------- 326
            R K EKKSS QVAF  G +++  I++FG ++E    S +KGT    +DST         
Sbjct: 64  RRPKVEKKSS-QVAFGAGDSSSPSIKSFGPRRE---VSSAKGTESEIIDSTSDERQIVNF 119

Query: 327 ---TLDDEQNLXXXXXXXXXXXXXXXXXXNSDYNSYYPTTIPFRRPNSGDPE 473
              T  ++++                     +Y++YYPTT+P+R+PNSGDPE
Sbjct: 120 SPVTAREDRSAPISSDASSTQKIKEDYKEPWNYDTYYPTTLPWRKPNSGDPE 171


>ref|XP_006421620.1| hypothetical protein CICLE_v10005426mg [Citrus clementina]
           gi|557523493|gb|ESR34860.1| hypothetical protein
           CICLE_v10005426mg [Citrus clementina]
          Length = 324

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 61/172 (35%), Positives = 84/172 (48%), Gaps = 22/172 (12%)
 Frame = +3

Query: 24  DSDRPAP--RKVRFAPKAPPRRN----TKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTR 185
           D D+P+   RKVRFAPKAPP       T P  +              Q L R+ NE   R
Sbjct: 4   DPDKPSGSGRKVRFAPKAPPPSRQPKVTAPTPVPRPESKHEDPEAEAQRLLRQFNEANAR 63

Query: 186 GRTKTEKKSSEQVAFD-GAATTGGIRTFGKQKERTDASKSKGT----VDSTE-------- 326
            R K EKKSS QVAF  G +++  I++FG ++E    S +KGT    +DST         
Sbjct: 64  RRPKVEKKSS-QVAFGAGDSSSPSIKSFGPRRE---VSSAKGTESEIIDSTSDERQIVNF 119

Query: 327 ---TLDDEQNLXXXXXXXXXXXXXXXXXXNSDYNSYYPTTIPFRRPNSGDPE 473
              T  ++++                     +Y++YYPTT+P+R+PNSGDPE
Sbjct: 120 SPATAREDRSAPISSDASSTQKIKEDYKEPWNYDTYYPTTLPWRKPNSGDPE 171


>ref|XP_002510979.1| DNA binding protein, putative [Ricinus communis]
           gi|223550094|gb|EEF51581.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 328

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 60/168 (35%), Positives = 78/168 (46%), Gaps = 18/168 (10%)
 Frame = +3

Query: 21  MDSDRPAP--RKVRFAPKAPPRRN---TKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTR 185
           MD ++P+P  RKV+F PKAP +R    T P                 Q L R+ NE+  R
Sbjct: 1   MDDEQPSPSQRKVKFTPKAPSQRRPRRTVPKTEVNGVDNNEDEAVQAQKLMRKFNENFRR 60

Query: 186 GRTKTEKKSSEQVAFD-GAATTGGIRTFGKQK-ERTDASKSKGTVD----------STET 329
              + EKKS+ QVAF  GA ++  IRTFG  K E   +S  K + D          ST+ 
Sbjct: 61  QGPRVEKKSTVQVAFGPGATSSTSIRTFGVSKGENPVSSGIKDSTDDDGKIVISSLSTDK 120

Query: 330 LDDEQNLXXXXXXXXXXXXXXXXXXNSDYN-SYYPTTIPFRRPNSGDP 470
            D+  N                     DY+ +YYPTT+P RRP SGDP
Sbjct: 121 EDEIINCASEDIDALPLKIKKDYREPWDYDRTYYPTTLPLRRPYSGDP 168


>ref|XP_004240014.1| PREDICTED: uncharacterized protein LOC101254492 [Solanum
           lycopersicum]
          Length = 373

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
 Frame = +3

Query: 21  MDSDRP----APRKVRFAPKAPPRR---NTKPAKIXXXXXXXXXXXXXQQSLRREVNEHL 179
           MD D P    + RKV+FAPK PPRR   N    K               +++ R+VNE L
Sbjct: 1   MDPDLPLSSSSTRKVKFAPKGPPRRKKQNPAQPKNEADGNEDRDDNEAAEAVLRKVNERL 60

Query: 180 TRGRTKTEKKSSEQVAF-DGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDD-EQNLX 353
           TR + KTEKK++ +VAF  G A+    +T GK +E T    S  T+   E+ D+ + +  
Sbjct: 61  TRQKPKTEKKAAVEVAFAHGVASPTSTKTSGKSRELTVNQDS--TLKDNESCDNMDIDSL 118

Query: 354 XXXXXXXXXXXXXXXXXNSD---------------YNSYYPTTIPFRRPNSGDPE 473
                            NSD               ++S YP T+P RRP +GDPE
Sbjct: 119 PTLPSSTGPDLAEMSVNNSDSLLKRKKEYKEPWDYHHSNYPVTLPLRRPYAGDPE 173


>ref|XP_006355616.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           [Solanum tuberosum]
          Length = 368

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 59/175 (33%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
 Frame = +3

Query: 21  MDSDRP----APRKVRFAPKAPPRR---NTKPAKIXXXXXXXXXXXXXQQSLRREVNEHL 179
           MD D P    + RKV+FAPK PPRR   N    K               +++ R+VNE L
Sbjct: 1   MDPDLPLSSSSTRKVKFAPKGPPRRKKQNPAQPKNEADGNEDRDDNEAAEAILRKVNERL 60

Query: 180 TRGRTKTEKKSSEQVAF-DGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDD-EQNLX 353
           TR + KTEKK   +VAF  G A+    +TFGK +E T    S  T+   E+ D+ + +  
Sbjct: 61  TRQKPKTEKK--VEVAFTHGVASPTSTKTFGKSRELTVNQDS--TLKDNESCDNMDIDSL 116

Query: 354 XXXXXXXXXXXXXXXXXNSD---------------YNSYYPTTIPFRRPNSGDPE 473
                            NSD               ++S YP T+P RRP +GDPE
Sbjct: 117 PTLPSSTGPDLAEMSVNNSDSLLKRKKEYKEPWDYHHSNYPVTLPLRRPYAGDPE 171


>gb|EOY30295.1| DNA-directed RNA polymerase III subunit RPC4, putative [Theobroma
           cacao]
          Length = 294

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 52/153 (33%), Positives = 71/153 (46%), Gaps = 3/153 (1%)
 Frame = +3

Query: 24  DSDRPAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRTKTE 203
           D+   APRK+RFAPKAPPR+  K  ++             +  L+R +N+   + + K E
Sbjct: 5   DNKTNAPRKMRFAPKAPPRQAPK-LEVKTEVVEDTDAVQARDLLQR-LNQTSAKTKPKVE 62

Query: 204 KK-SSEQVAFDGAATTGGIRTFGKQK--ERTDASKSKGTVDSTETLDDEQNLXXXXXXXX 374
           KK +S QVAF     +  ++ FG  K   RT      G V  T  L +E+          
Sbjct: 63  KKVASSQVAFGHGGASASMKLFGVSKGASRTSRETLNGVVH-TPGLREEKEYREPW---- 117

Query: 375 XXXXXXXXXXNSDYNSYYPTTIPFRRPNSGDPE 473
                       DY SYYP T+P RRP SG+PE
Sbjct: 118 ------------DYYSYYPVTLPMRRPYSGNPE 138


>gb|EOY22841.1| DNA binding protein, putative isoform 2 [Theobroma cacao]
          Length = 328

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 56/174 (32%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
 Frame = +3

Query: 21  MDSDRPAP--RKVRFAPKAPPR-RNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGR 191
           MD D P+   RKVRFAPKAP   R  K                  Q L    NE+ TR R
Sbjct: 1   MDQDGPSSGRRKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQAQYLLGRFNENQTRQR 60

Query: 192 TKTEKKSSEQVAF-DGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDDEQNLXXXXXX 368
            K EKKSS Q++F  GA ++  +R +G Q+  T    S  + DS +   D+ +       
Sbjct: 61  PKVEKKSSAQISFGPGAPSSNLLRAYGSQRGGT----SGKSTDSRQRSPDDNDGQIIGSF 116

Query: 369 XXXXXXXXXXXXNSD-------------------YNSYYPTTIPFRRPNSGDPE 473
                       +SD                   +++YYP T+P RRP SGDPE
Sbjct: 117 PSASKEDRTDICSSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPE 170


>ref|XP_006362806.1| PREDICTED: uncharacterized protein LOC102600766 [Solanum tuberosum]
          Length = 283

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 49/154 (31%), Positives = 65/154 (42%), Gaps = 3/154 (1%)
 Frame = +3

Query: 21  MDSDR---PAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGR 191
           MDSD     APRKVRFAPK PPRR  K                  + L +  NE   + +
Sbjct: 1   MDSDSFATKAPRKVRFAPKGPPRRAQKTVLPKPENVEADGDAAKAEELMQRFNEASAKVK 60

Query: 192 TKTEKKSSEQVAFDGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDDEQNLXXXXXXX 371
            K EKK   QVAF    ++  ++++G    +   S S G +   E +  E          
Sbjct: 61  HKVEKKGPTQVAFGYGGSSSSLKSYG-HYNKVSGSMSDGGIGG-ERVQKEYTEPW----- 113

Query: 372 XXXXXXXXXXXNSDYNSYYPTTIPFRRPNSGDPE 473
                        DY + YP T+P RRP SG+PE
Sbjct: 114 -------------DYYTNYPVTLPVRRPYSGNPE 134


>ref|XP_006428587.1| hypothetical protein CICLE_v10012311mg [Citrus clementina]
           gi|568853572|ref|XP_006480425.1| PREDICTED:
           uncharacterized protein LOC102622464 [Citrus sinensis]
           gi|557530644|gb|ESR41827.1| hypothetical protein
           CICLE_v10012311mg [Citrus clementina]
          Length = 303

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 45/147 (30%), Positives = 67/147 (45%), Gaps = 2/147 (1%)
 Frame = +3

Query: 39  APRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRR-EVNEHLTRGRTKTEKK-S 212
           A RK+++APKAPPRR  K A++                L+R   N+   +GR K EKK +
Sbjct: 12  ATRKIKYAPKAPPRRVPK-AEVKTEMVENADAAQAMDLLQRFNANQGALKGRPKVEKKVA 70

Query: 213 SEQVAFDGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDDEQNLXXXXXXXXXXXXXX 392
             Q+AF     +  I+++G  K  + +S+ +G+  +         L              
Sbjct: 71  PSQIAFGQGGASTFIKSYGIPKGGSSSSRGQGSAVNGGAHASGTRLGKEYQEPW------ 124

Query: 393 XXXXNSDYNSYYPTTIPFRRPNSGDPE 473
                 DY SYYP ++P RRP SG PE
Sbjct: 125 ------DYYSYYPVSLPLRRPYSGSPE 145


>ref|XP_002278210.2| PREDICTED: uncharacterized protein LOC100256088 [Vitis vinifera]
          Length = 289

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 6/156 (3%)
 Frame = +3

Query: 24  DSDRPAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRTKTE 203
           +S   A RKVRFAPKAP  R    + +                L R  NE   +G+ K E
Sbjct: 8   NSTAAATRKVRFAPKAP--RRVPKSVVPKSEVAEDDDAAQANELMRHFNEASMKGKPKAE 65

Query: 204 KK-SSEQVAFDGAATTGGIRTFGKQKERTDASK-----SKGTVDSTETLDDEQNLXXXXX 365
           KK +  QVAF     +  IR++G  +  T++S+     S G +  +   D ++       
Sbjct: 66  KKLAPTQVAFGYGGASASIRSYGTPRGATNSSRYQDPASGGGLYGSGLSDHKEYKEPW-- 123

Query: 366 XXXXXXXXXXXXXNSDYNSYYPTTIPFRRPNSGDPE 473
                          DY +YYP T+P RRP SG+PE
Sbjct: 124 ---------------DYYTYYPVTLPLRRPYSGNPE 144


>ref|XP_004144123.1| PREDICTED: uncharacterized protein LOC101209454 [Cucumis sativus]
           gi|449500539|ref|XP_004161125.1| PREDICTED:
           uncharacterized LOC101209454 [Cucumis sativus]
          Length = 293

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
 Frame = +3

Query: 39  APRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRTKTEKKSSE 218
           APRK++FAPKAP RR  KP                 + L +  NE   R + +  +K++ 
Sbjct: 12  APRKLKFAPKAPVRRIPKPE--VKAEVAEDADAAQARDLLKRFNESTQRAKQRVGRKAAP 69

Query: 219 -QVAFDGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDDEQNLXXXXXXXXXXXXXXX 395
            QVAF    ++  +R++G  K         GT+ ++ + +  +                 
Sbjct: 70  TQVAFGSGGSSSTLRSYGVSKAGNRPRNEDGTLPASTSKEYVEPW--------------- 114

Query: 396 XXXNSDYNSYYPTTIPFRRPNSGDPE 473
                DY SYYP T+P RRP SG+P+
Sbjct: 115 -----DYYSYYPVTLPLRRPYSGNPD 135


>ref|NP_196500.1| RNA polymerase III RPC4 [Arabidopsis thaliana]
           gi|9955525|emb|CAC05464.1| putative protein [Arabidopsis
           thaliana] gi|332004001|gb|AED91384.1| RNA polymerase III
           RPC4 [Arabidopsis thaliana]
          Length = 272

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 45/147 (30%), Positives = 60/147 (40%)
 Frame = +3

Query: 33  RPAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRTKTEKKS 212
           +P  RK++FAPKAPP+R  KP ++                L R VNE   R     +K  
Sbjct: 4   KPPVRKMKFAPKAPPKRVPKP-EVKPEVVEDNSNSAQASELLRRVNERSLRKPKADKKVP 62

Query: 213 SEQVAFDGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDDEQNLXXXXXXXXXXXXXX 392
           + QVA+ G             +     ++S G   ST T + E                 
Sbjct: 63  ASQVAWLGGVVNS-------TRSNKYLNRSNGAYGSTSTQEIEYKEPW------------ 103

Query: 393 XXXXNSDYNSYYPTTIPFRRPNSGDPE 473
                 DY SYYP T+P RRP +GDPE
Sbjct: 104 ------DYYSYYPITLPMRRPYAGDPE 124


>ref|XP_004514516.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like
           isoform X2 [Cicer arietinum]
          Length = 315

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 50/171 (29%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
 Frame = +3

Query: 24  DSDRPAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEH-------LT 182
           ++ RP PRKV++ PK    R TK                 Q S+  +   H       + 
Sbjct: 7   ETPRP-PRKVKYTPKKLKPRETK--------IQSRCGADEQNSVETQARVHRLNLEAPVA 57

Query: 183 RGRTKTEKKSSEQVAFDGAATTG-GIRTFGKQKERTDASKSK-------GTVDSTETLDD 338
           R  TK EK+SS QVAF    ++   ++TF     +T  SKSK       G+   +  + D
Sbjct: 58  RRETKVEKQSSLQVAFGPKGSSSPSLKTFSSGNSKTSGSKSKISANEKNGSTHYSTAIVD 117

Query: 339 EQNLXXXXXXXXXXXXXXXXXXNSDY------NSYYPTTIPFRRPNSGDPE 473
           + N                     DY      NS YP T+P R+P SGDPE
Sbjct: 118 QSNTCVIDVADDDTTDSSDGKIKKDYKDPWDLNSNYPITLPLRKPYSGDPE 168


>ref|XP_004514515.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like
           isoform X1 [Cicer arietinum]
          Length = 316

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 50/171 (29%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
 Frame = +3

Query: 24  DSDRPAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEH-------LT 182
           ++ RP PRKV++ PK    R TK                 Q S+  +   H       + 
Sbjct: 7   ETPRP-PRKVKYTPKKLKPRETK--------IQSRCGADEQNSVETQARVHRLNLEAPVA 57

Query: 183 RGRTKTEKKSSEQVAFDGAATTG-GIRTFGKQKERTDASKSK-------GTVDSTETLDD 338
           R  TK EK+SS QVAF    ++   ++TF     +T  SKSK       G+   +  + D
Sbjct: 58  RRETKVEKQSSLQVAFGPKGSSSPSLKTFSSGNSKTSGSKSKISANEKNGSTHYSTAIVD 117

Query: 339 EQNLXXXXXXXXXXXXXXXXXXNSDY------NSYYPTTIPFRRPNSGDPE 473
           + N                     DY      NS YP T+P R+P SGDPE
Sbjct: 118 QSNTCVIDVADDDTTDSSDGKIKKDYKDPWDLNSNYPITLPLRKPYSGDPE 168


>ref|XP_004495578.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cicer
           arietinum]
          Length = 298

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 46/154 (29%), Positives = 64/154 (41%), Gaps = 2/154 (1%)
 Frame = +3

Query: 18  SMDSDRPAPRKVRFAPKAPPRRNTK-PAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRT 194
           + DS  PAPRKV+FAPKA PR+  K   K               + L R  NE+  + R 
Sbjct: 4   NFDSKPPAPRKVKFAPKALPRKVPKIEVKSEVAEEDNATAAADAKELLRRFNENAMKARM 63

Query: 195 KTEKK-SSEQVAFDGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDDEQNLXXXXXXX 371
           K EKK S+ Q+AF     +   +++   K  +  S  +    +     + Q         
Sbjct: 64  KVEKKVSASQIAFGFGGESVSRKSYNIPKSESKTSFGENLAFNGVKEKEYQEPW------ 117

Query: 372 XXXXXXXXXXXNSDYNSYYPTTIPFRRPNSGDPE 473
                        D NS YP  +P R+P SGDPE
Sbjct: 118 -------------DMNSNYPIALPLRKPYSGDPE 138


>ref|XP_006288444.1| hypothetical protein CARUB_v10001705mg [Capsella rubella]
           gi|482557150|gb|EOA21342.1| hypothetical protein
           CARUB_v10001705mg [Capsella rubella]
          Length = 271

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 45/147 (30%), Positives = 58/147 (39%)
 Frame = +3

Query: 33  RPAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRTKTEKKS 212
           +P  RK+RFAPKAPP+R  KP ++                L R V E   R     +K  
Sbjct: 4   KPPARKMRFAPKAPPKRVPKP-EVKPEVVENDSNSAQAMELLRRVTERSLRKPKGDKKVP 62

Query: 213 SEQVAFDGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDDEQNLXXXXXXXXXXXXXX 392
           + QVA+ G             +     + S G   ST T + E                 
Sbjct: 63  ASQVAWMGGVVNSS-------RSNKYLNGSTGAYGSTSTQEIEYKEPW------------ 103

Query: 393 XXXXNSDYNSYYPTTIPFRRPNSGDPE 473
                 DY SYYP T+P RRP +GDPE
Sbjct: 104 ------DYYSYYPITLPLRRPYAGDPE 124


>ref|XP_002873399.1| DNA-directed RNA polymerase III RPC4 family protein [Arabidopsis
           lyrata subsp. lyrata] gi|297319236|gb|EFH49658.1|
           DNA-directed RNA polymerase III RPC4 family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 271

 Score = 58.9 bits (141), Expect = 7e-07
 Identities = 46/147 (31%), Positives = 61/147 (41%)
 Frame = +3

Query: 33  RPAPRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRTKTEKKS 212
           +P  RK++FAPKAPP+R  KP ++                L R VNE     R+  + K+
Sbjct: 4   KPPVRKMKFAPKAPPKRVPKP-EVKPEVVENDSNSAQALELLRRVNE-----RSLRKPKA 57

Query: 213 SEQVAFDGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDDEQNLXXXXXXXXXXXXXX 392
            ++V     A  GG+            S S G   ST T + E                 
Sbjct: 58  DKKVPASRVAWMGGV--VNSTTSNKYLSGSNGAYGSTSTQEIEYKEPW------------ 103

Query: 393 XXXXNSDYNSYYPTTIPFRRPNSGDPE 473
                 DY SYYP T+P RRP +GDPE
Sbjct: 104 ------DYYSYYPITLPMRRPYAGDPE 124


>ref|XP_002516293.1| DNA binding protein, putative [Ricinus communis]
           gi|223544779|gb|EEF46295.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 286

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 3/153 (1%)
 Frame = +3

Query: 21  MDSDRPA--PRKVRFAPKAPPRRNTKPAKIXXXXXXXXXXXXXQQSLRREVNEHLTRGRT 194
           M+S  P   PRK+++ PKAPPRR  KP                   L ++  E   R + 
Sbjct: 1   MESKPPQDPPRKLKYMPKAPPRRPPKPE--VKSEKAEDEDATQAMKLMKQFQERSMRAKP 58

Query: 195 KTEKK-SSEQVAFDGAATTGGIRTFGKQKERTDASKSKGTVDSTETLDDEQNLXXXXXXX 371
           K EKK  + Q+AF   A +  I+++   K     + ++G+  +      E          
Sbjct: 59  KAEKKVQASQIAFGFGAASPSIKSYAAPKVGAAVNHNQGSSVNGGAYSSELGEKEYIEPW 118

Query: 372 XXXXXXXXXXXNSDYNSYYPTTIPFRRPNSGDP 470
                        +Y SYYP T+P RRP SG+P
Sbjct: 119 -------------NYYSYYPVTLPLRRPYSGNP 138