BLASTX nr result
ID: Rehmannia26_contig00017557
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00017557
(873 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN83181.1| hypothetical protein VITISV_013310 [Vitis vinifera] 98 3e-18
gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-ty... 96 2e-17
emb|CAN63777.1| hypothetical protein VITISV_043745 [Vitis vinifera] 96 2e-17
gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymera... 93 1e-16
gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group] 91 4e-16
gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subc... 91 4e-16
gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japoni... 89 2e-15
gb|AAM08523.1|AC068654_25 Putative retroelement [Oryza sativa Ja... 89 2e-15
gb|ABB46643.2| retrotransposon protein, putative, Ty1-copia subc... 89 2e-15
gb|AAM08718.1|AC116601_11 Putative gag-pol polyprotein [Oryza sa... 89 2e-15
emb|CAN71808.1| hypothetical protein VITISV_011726 [Vitis vinifera] 89 3e-15
emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group] 88 4e-15
gb|ABF94836.1| retrotransposon protein, putative, unclassified [... 88 4e-15
gb|ABF93543.1| retrotransposon protein, putative, unclassified [... 88 4e-15
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 88 4e-15
emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis] 87 6e-15
gb|ABA98847.1| retrotransposon protein, putative, unclassified [... 87 6e-15
gb|AAW57789.1| putative polyprotein [Oryza sativa Japonica Group] 87 8e-15
emb|CAE04585.2| OSJNBb0006N15.2 [Oryza sativa Japonica Group] 87 1e-14
gb|EOY19086.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) ... 86 1e-14
>emb|CAN83181.1| hypothetical protein VITISV_013310 [Vitis vinifera]
Length = 455
Score = 98.2 bits (243), Expect = 3e-18
Identities = 88/271 (32%), Positives = 130/271 (47%), Gaps = 26/271 (9%)
Frame = +1
Query: 133 RSYLHFTCPFLF*ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGLKFFLGQINF------- 288
R L F C ++F LYQMD+KS FLNG N + + G + F NF
Sbjct: 41 RMLLAFACF----KDFVLYQMDVKSAFLNGFINEEVYVEQPPGFQSF----NFPNHVFRL 92
Query: 289 ---IKGL-----VWFKTSTPHMV**S*LFLLNGFTTGKVYTTLFVFEKGQDCLLVQIY-- 438
+ GL W++ + + L GF GK+ TLF+ K D LLVQIY
Sbjct: 93 KKTLYGLKQAXRAWYERLSKFJ-------LKKGFKMGKIDXTLFIKTKXNDMLLVQIYVD 145
Query: 439 DIIYSATNEVLYKIFSKLLQGKFKMIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH 618
DII+ ATN L + FSK + +F+M MMGELNFFI +Q++Q ++G +I +KY ++ ++
Sbjct: 146 DIIFGATNVSLCEEFSKCMHSEFEMSMMGELNFFIGLQIKQLKEGTFINQAKYIRDLLKR 205
Query: 619 *RRKNHLNL---YDYHVKID-KG*GRHIG*QTNSRYVHLLLLL----P*TRHSICLTSIC 774
+ + +K+D G+ I + LL L P +SICL C
Sbjct: 206 FNMEEAKTMKTPMSSSIKLDMDXKGKLINSTMYRGMIGSLLYLTASRPDIMYSICL---C 262
Query: 775 STSKTIPTNLIKVPLKEIFKYLKGTSSYDLY 867
+ ++ P +K I +YLKG L+
Sbjct: 263 ARFQSCPKESHLSAVKRILRYLKGIMDIGLW 293
Score = 73.2 bits (178), Expect = 1e-10
Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF-*MVQI 229
K RLVAQ QEEGID++ETFAPVA LEAI +LLA +CFK + + + +
Sbjct: 11 KARLVAQGFNQEEGIDYEETFAPVARLEAIRMLLAFACFKDFVLYQMDVKSAFLNGFINE 70
Query: 230 EVYKKKTIGV*NFF*AKLI--L*KALYGLKQVPRIWYDSLS 346
EVY ++ G +F + L K LYGLKQ R WY+ LS
Sbjct: 71 EVYVEQPPGFQSFNFPNHVFRLKKTLYGLKQAXRAWYERLS 111
>gb|ABD32582.1| Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase
aspartic, catalytic [Medicago truncatula]
Length = 1715
Score = 95.9 bits (237), Expect = 2e-17
Identities = 83/242 (34%), Positives = 123/242 (50%), Gaps = 12/242 (4%)
Frame = +1
Query: 184 LYQMDIKSNFLNGS-NRSL*KKNNRG---LKFFLGQINFIKGLVWFKTSTPHMV**S*LF 351
LYQMD+KS FLNG + K G LK K L K + F
Sbjct: 1312 LYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNF 1371
Query: 352 LL-NGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFKMIMM 522
L+ N F G+V TTLF +D L+VQIY DII+ +TN L K FSKL+Q +F+M MM
Sbjct: 1372 LIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMM 1431
Query: 523 GELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKN----HLNLYDYHVKIDKG*GRHI 690
GEL FF+ IQ+ Q ++G Y+ +KYTKE ++ + ++ + ++ + G +
Sbjct: 1432 GELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVV 1491
Query: 691 G*QTNSRYVHLLLLLP*TRHSICLT-SICSTSKTIPTNLIKVPLKEIFKYLKGTSSYDLY 867
+ + LL L +R I + +C+ ++ P +K IF+YLKGT++ L
Sbjct: 1492 DQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLL 1551
Query: 868 IR 873
R
Sbjct: 1552 YR 1553
Score = 69.7 bits (169), Expect = 1e-09
Identities = 80/257 (31%), Positives = 116/257 (45%), Gaps = 13/257 (5%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF-*MVQI 229
K RLVAQ Q+EGID+ ETFAPVA LEAI +LL+++ I + + + +++
Sbjct: 1269 KARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEE 1328
Query: 230 EVYKKKTIGV*NFF*AKLI--L*KALYGLKQVPRIWYDSLSFSC*MVLQQVKFIPLSLF- 400
EVY K+ G + + L K+LYGLKQ PR WYD LS + + +LF
Sbjct: 1329 EVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFR 1388
Query: 401 --LKKG-KIVYLYKFMISFIVLLMKFCTRYFLSCCKVNXXXXXXXXXXXXLKFKFNNAKK 571
LKK IV +Y I F C + F + L + N +K+
Sbjct: 1389 RTLKKDILIVQIYVDDIIFGSTNASLC-KEFSKLMQDEFEMSMMGELKFFLGIQINQSKE 1447
Query: 572 VVIFHTQSIQK---KK*GXXXXXXXXXXXXXXXXLTKVEEGISVDKQI-RGMF--IYFYY 733
V H K KK L+K + G VD+++ RGM + +
Sbjct: 1448 GVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLT 1507
Query: 734 SHRLDIPYALRLYARLQ 784
+ R DI +++ L AR Q
Sbjct: 1508 ASRPDILFSVCLCARFQ 1524
>emb|CAN63777.1| hypothetical protein VITISV_043745 [Vitis vinifera]
Length = 898
Score = 95.9 bits (237), Expect = 2e-17
Identities = 70/187 (37%), Positives = 101/187 (54%), Gaps = 17/187 (9%)
Frame = +1
Query: 133 RSYLHFTCPFLF*ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGLKFFLGQINFIK----- 294
R L F C ++F LYQMD+KS FLNG N + + G + F + K
Sbjct: 715 RMLLAFACF----KDFILYQMDVKSXFLNGFINEEVYXEQPPGFQSFNFPNHVFKLKKAL 770
Query: 295 -GL-----VWFKTSTPHMV**S*LFLLNGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIY 450
GL W++ + + GF GK+ TTLF+ K +D LLVQIY DII+
Sbjct: 771 YGLKQAPRAWYERLSKFLX-------KKGFKMGKIDTTLFIKTKEKDMLLVQIYVDDIIF 823
Query: 451 SATNEVLYKIFSKLLQGKFKMIMMGELNFFIEIQVQQCQKGGYIPYSKYTK---EEVRH* 621
ATN+ L + FSK + +F+M MMGELNFF+ +Q++Q ++G +I +KY K +E +H
Sbjct: 824 GATNBSLCEDFSKCMHSEFEMSMMGELNFFLGLQIKQLKEGTFINQAKYIKDLLQEXQHG 883
Query: 622 RRKNHLN 642
R + N
Sbjct: 884 RSQGDEN 890
Score = 73.2 bits (178), Expect = 1e-10
Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF-*MVQI 229
K RLVAQ QE ID++ETFAPVA LEAI +LLA +CFK + + + +
Sbjct: 685 KARLVAQGYNQEXXIDYEETFAPVARLEAIRMLLAFACFKDFILYQMDVKSXFLNGFINE 744
Query: 230 EVYKKKTIGV*NFF*AKLI--L*KALYGLKQVPRIWYDSLS 346
EVY ++ G +F + L KALYGLKQ PR WY+ LS
Sbjct: 745 EVYXEQPPGFQSFNFPNHVFKLKKALYGLKQAPRAWYERLS 785
>gb|ABE88110.1| Reverse transcriptase (RNA-dependent DNA polymerase), putative
[Medicago truncatula]
Length = 1654
Score = 92.8 bits (229), Expect = 1e-16
Identities = 82/242 (33%), Positives = 122/242 (50%), Gaps = 12/242 (4%)
Frame = +1
Query: 184 LYQMDIKSNFLNGS-NRSL*KKNNRG---LKFFLGQINFIKGLVWFKTSTPHMV**S*LF 351
LYQMD+KS LNG + K G LK K L K + F
Sbjct: 1251 LYQMDVKSALLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNF 1310
Query: 352 LL-NGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFKMIMM 522
L+ N F G+V TTLF +D L+VQIY DII+ +TN L K FSKL+Q +F+M MM
Sbjct: 1311 LIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMM 1370
Query: 523 GELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKN----HLNLYDYHVKIDKG*GRHI 690
GEL FF+ IQ+ Q ++G Y+ +KYTKE ++ + ++ + ++ + G +
Sbjct: 1371 GELKFFLVIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMYTPMHPTCTLSKEDTGTVV 1430
Query: 691 G*QTNSRYVHLLLLLP*TRHSICLT-SICSTSKTIPTNLIKVPLKEIFKYLKGTSSYDLY 867
+ + LL L +R I + +C+ ++ P +K IF+YLKGT++ L
Sbjct: 1431 DQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKIIFRYLKGTTNLGLL 1490
Query: 868 IR 873
R
Sbjct: 1491 YR 1492
Score = 70.5 bits (171), Expect = 8e-10
Identities = 80/257 (31%), Positives = 117/257 (45%), Gaps = 13/257 (5%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF-*MVQI 229
K RLVAQ Q+EGID+ ETFAPVA LEAI +LL+++ I + + + + +++
Sbjct: 1208 KARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSALLNGVIEE 1267
Query: 230 EVYKKKTIGV*NFF*AKLI--L*KALYGLKQVPRIWYDSLSFSC*MVLQQVKFIPLSLF- 400
EVY K+ G + + L K+LYGLKQ PR WYD LS + + +LF
Sbjct: 1268 EVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFR 1327
Query: 401 --LKKG-KIVYLYKFMISFIVLLMKFCTRYFLSCCKVNXXXXXXXXXXXXLKFKFNNAKK 571
LKK IV +Y I F C + F + L + N +K+
Sbjct: 1328 RTLKKDILIVQIYVDDIIFGSTNASLC-KEFSKLMQDEFEMSMMGELKFFLVIQINQSKE 1386
Query: 572 VVIFHTQSIQK---KK*GXXXXXXXXXXXXXXXXLTKVEEGISVDKQI-RGMF--IYFYY 733
V H K KK L+K + G VD+++ RGM + +
Sbjct: 1387 GVYVHQTKYTKELLKKFKLEDCKVMYTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLT 1446
Query: 734 SHRLDIPYALRLYARLQ 784
+ R DI +++ L AR Q
Sbjct: 1447 ASRPDILFSVCLCARFQ 1463
>gb|AAM94552.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1584
Score = 91.3 bits (225), Expect = 4e-16
Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 20/251 (7%)
Frame = +1
Query: 175 NFKLYQMDIKSNFLNGSNRSL*-----------KKNNRGLKFFLGQINFIKGLVWFKTST 321
+ KL+QMD+KS FLNG L K N K K L K +
Sbjct: 1176 DIKLFQMDVKSAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLS-------KALYGLKQAP 1228
Query: 322 PHMV**S*LFLLN-GFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKL 492
FLL+ F GKV TTLF G D + QIY DII+ +TNEV K F +
Sbjct: 1229 RAWYERLRYFLLSKDFKIGKVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDM 1288
Query: 493 LQGKFKMIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNL-----YDYH 657
+ +F+M M+GELNFF+ +Q++Q + G ++ +KY K+ ++ ++ + + H
Sbjct: 1289 MSREFEMSMIGELNFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGH 1348
Query: 658 VKIDKG*GRHIG*QTNSRYVHLLLLLP*TRHSICLT-SICSTSKTIPTNLIKVPLKEIFK 834
+ +DKG G+ + + + LL L +R I + +C+ + P V +K I +
Sbjct: 1349 LDLDKG-GKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILR 1407
Query: 835 YLKGTSSYDLY 867
YLK +S+ L+
Sbjct: 1408 YLKHSSTIGLW 1418
Score = 62.0 bits (149), Expect = 3e-07
Identities = 49/117 (41%), Positives = 59/117 (50%), Gaps = 18/117 (15%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAH-SCFK----KISSFTKWILNPIF* 217
K RLVAQ Q EG+DF ETFAPVA LEAI ILLA SCF ++ + ++ I
Sbjct: 1136 KARLVAQGFTQVEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAE 1195
Query: 218 MVQIE-------------VYKKKTIGV*NFF*AKLIL*KALYGLKQVPRIWYDSLSF 349
+V +E VYK L KALYGLKQ PR WY+ L +
Sbjct: 1196 LVFVEQPPGFEDPKNPNHVYK---------------LSKALYGLKQAPRAWYERLRY 1237
>gb|ABG66113.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2112
Score = 91.3 bits (225), Expect = 4e-16
Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 20/251 (7%)
Frame = +1
Query: 175 NFKLYQMDIKSNFLNGSNRSL*-----------KKNNRGLKFFLGQINFIKGLVWFKTST 321
+ KL+QMD+KS FLNG L K N K K L K +
Sbjct: 1176 DIKLFQMDVKSAFLNGEIAELVFVEQPPGFEDPKNPNHVYKLS-------KALYGLKQAP 1228
Query: 322 PHMV**S*LFLLN-GFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKL 492
FLL+ F GKV TTLF G D + QIY DII+ +TNEV K F +
Sbjct: 1229 RAWYERLRYFLLSKDFKIGKVNTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGDM 1288
Query: 493 LQGKFKMIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNL-----YDYH 657
+ +F+M M+GELNFF+ +Q++Q + G ++ +KY K+ ++ ++ + + H
Sbjct: 1289 MSREFEMSMIGELNFFLGLQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGH 1348
Query: 658 VKIDKG*GRHIG*QTNSRYVHLLLLLP*TRHSICLT-SICSTSKTIPTNLIKVPLKEIFK 834
+ +DKG G+ + + + LL L +R I + +C+ + P V +K I +
Sbjct: 1349 LDLDKG-GKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILR 1407
Query: 835 YLKGTSSYDLY 867
YLK +S+ L+
Sbjct: 1408 YLKHSSTIGLW 1418
Score = 62.0 bits (149), Expect = 3e-07
Identities = 49/117 (41%), Positives = 59/117 (50%), Gaps = 18/117 (15%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAH-SCFK----KISSFTKWILNPIF* 217
K RLVAQ Q EG+DF ETFAPVA LEAI ILLA SCF ++ + ++ I
Sbjct: 1136 KARLVAQGFTQVEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAE 1195
Query: 218 MVQIE-------------VYKKKTIGV*NFF*AKLIL*KALYGLKQVPRIWYDSLSF 349
+V +E VYK L KALYGLKQ PR WY+ L +
Sbjct: 1196 LVFVEQPPGFEDPKNPNHVYK---------------LSKALYGLKQAPRAWYERLRY 1237
>gb|AAO37957.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108712101|gb|ABF99896.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1969
Score = 89.4 bits (220), Expect = 2e-15
Identities = 76/247 (30%), Positives = 115/247 (46%), Gaps = 15/247 (6%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGL---KFFLGQINFIKGLVWFKTSTPHMV** 339
+ FKL+QMD+KS FLNG + K G KF K L K +
Sbjct: 1386 KGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYER 1445
Query: 340 S*LFLL-NGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFK 510
FLL NGF G V TLF G D LLVQIY DII+ ++ L FS ++ +F+
Sbjct: 1446 LKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFE 1505
Query: 511 MIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNLYDYHVKIDKG*GRHI 690
M MMGEL FF+ +Q++Q ++G ++ +KY+KE ++ + +
Sbjct: 1506 MSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDED 1565
Query: 691 G*QTNSR--------YVHLLLLLP*TRHSICLTSICSTSKTIPTNLIKVPLKEIFKYLKG 846
G + + R ++L P S+CL C+ + P + +K IF+Y+K
Sbjct: 1566 GEEVDQREYRSMIGSLLYLTASRPDIHFSVCL---CARFQASPRTSHRQAVKRIFRYIKS 1622
Query: 847 TSSYDLY 867
T Y ++
Sbjct: 1623 TLEYGIW 1629
Score = 73.6 bits (179), Expect = 9e-11
Identities = 50/106 (47%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +2
Query: 35 GTSLMIKGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF 214
G+ + K RLVAQ Q EG+DF+ETFAPVA LEAI ILLA + K F + +
Sbjct: 1341 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1400
Query: 215 -*MVQIEVYKKKTIGV*N--FF*AKLIL*KALYGLKQVPRIWYDSL 343
+++ EVY K+ G N F L KALYGLKQ PR WY+ L
Sbjct: 1401 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERL 1446
>gb|AAM08523.1|AC068654_25 Putative retroelement [Oryza sativa Japonica Group]
gi|31429833|gb|AAP51828.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1522
Score = 89.4 bits (220), Expect = 2e-15
Identities = 61/161 (37%), Positives = 89/161 (55%), Gaps = 7/161 (4%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGLK---FFLGQINFIKGLVWFKTSTPHMV** 339
+ FKLYQMD+KS FLNG + K G + F K L K +
Sbjct: 1113 KGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPKHVFKLSKALYGLKQAPRAWYDR 1172
Query: 340 S*LFLLN-GFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFK 510
FLL GFT GKV TLFV + G + L VQIY DII+ + L F++++ +FK
Sbjct: 1173 LKNFLLTKGFTIGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHALVVDFAEIMHREFK 1232
Query: 511 MIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKN 633
M MMGEL++F+ +Q++Q +G ++ +KYTK+ +R + +N
Sbjct: 1233 MSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMEN 1273
Score = 67.0 bits (162), Expect = 9e-09
Identities = 47/100 (47%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF-*MVQI 229
K LVAQ Q EG+DFDETFA VA +EAI +LLA + K + + + +Q
Sbjct: 1074 KAGLVAQGFTQVEGLDFDETFANVAIIEAIRLLLAFATSKGFKLYQMDVKSAFLNGFIQE 1133
Query: 230 EVYKKKTIGV*NFF*AKLI--L*KALYGLKQVPRIWYDSL 343
EVY K+ G N K + L KALYGLKQ PR WYD L
Sbjct: 1134 EVYVKQPPGFENPDFPKHVFKLSKALYGLKQAPRAWYDRL 1173
>gb|ABB46643.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1604
Score = 89.0 bits (219), Expect = 2e-15
Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 20/251 (7%)
Frame = +1
Query: 175 NFKLYQMDIKSNFLNGSNRSL*-----------KKNNRGLKFFLGQINFIKG-LVWFKTS 318
+ KL+QMD+KS FLNG L K N K + W++
Sbjct: 1047 DIKLFQMDVKSAFLNGEIAELVFVEQPLGFEDPKNPNHVYKLSKALYGLKQAPRAWYERL 1106
Query: 319 TPHMV**S*LFLLNGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKL 492
+ L F GKV TTLF G D + QIY DII+ +TNEV K F +
Sbjct: 1107 RDFL-------LSKYFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGNM 1159
Query: 493 LQGKFKMIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNL-----YDYH 657
+ +F+M M+GEL+FF+ +Q++Q + G ++ +KY K+ ++ ++ ++ + H
Sbjct: 1160 MSREFEMSMIGELSFFLGVQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKSIKTPIATNGH 1219
Query: 658 VKIDKG*GRHIG*QTNSRYVHLLLLLP*TRHSICLT-SICSTSKTIPTNLIKVPLKEIFK 834
+ +D+G G+ + + + LL L +R I + +C+ + P V +K I +
Sbjct: 1220 LDLDEG-GKPVDLKLYRSMIGSLLFLTASRPDIIFSVCMCARFQAAPKECHLVAVKRILR 1278
Query: 835 YLKGTSSYDLY 867
YLK +S+ L+
Sbjct: 1279 YLKHSSTIGLW 1289
Score = 62.0 bits (149), Expect = 3e-07
Identities = 49/115 (42%), Positives = 59/115 (51%), Gaps = 18/115 (15%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAH-SCFK----KISSFTKWILNPIF* 217
K RLVAQ Q+EG+DF ETFAPVA LEAI ILLA SCF ++ + ++ I
Sbjct: 1007 KPRLVAQGFTQDEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAE 1066
Query: 218 MVQIE-------------VYKKKTIGV*NFF*AKLIL*KALYGLKQVPRIWYDSL 343
+V +E VYK L KALYGLKQ PR WY+ L
Sbjct: 1067 LVFVEQPLGFEDPKNPNHVYK---------------LSKALYGLKQAPRAWYERL 1106
>gb|AAM08718.1|AC116601_11 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1627
Score = 89.0 bits (219), Expect = 2e-15
Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 20/251 (7%)
Frame = +1
Query: 175 NFKLYQMDIKSNFLNGSNRSL*-----------KKNNRGLKFFLGQINFIKG-LVWFKTS 318
+ KL+QMD+KS FLNG L K N K + W++
Sbjct: 1047 DIKLFQMDVKSAFLNGEIAELVFVEQPLGFEDPKNPNHVYKLSKALYGLKQAPRAWYERL 1106
Query: 319 TPHMV**S*LFLLNGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKL 492
+ L F GKV TTLF G D + QIY DII+ +TNEV K F +
Sbjct: 1107 RDFL-------LSKYFKIGKVDTTLFTKIIGDDFFVCQIYVDDIIFGSTNEVFCKEFGNM 1159
Query: 493 LQGKFKMIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNL-----YDYH 657
+ +F+M M+GEL+FF+ +Q++Q + G ++ +KY K+ ++ ++ ++ + H
Sbjct: 1160 MSREFEMSMIGELSFFLGVQIKQLKDGTFVSQTKYIKDLLKRFGLEDAKSIKTPIATNGH 1219
Query: 658 VKIDKG*GRHIG*QTNSRYVHLLLLLP*TRHSICLT-SICSTSKTIPTNLIKVPLKEIFK 834
+ +D+G G+ + + + LL L +R I + +C+ + P V +K I +
Sbjct: 1220 LDLDEG-GKPVDLKLYRSMIGSLLFLTASRPDIIFSVCMCARFQAAPKECHLVAVKRILR 1278
Query: 835 YLKGTSSYDLY 867
YLK +S+ L+
Sbjct: 1279 YLKHSSTIGLW 1289
Score = 62.0 bits (149), Expect = 3e-07
Identities = 49/115 (42%), Positives = 59/115 (51%), Gaps = 18/115 (15%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAH-SCFK----KISSFTKWILNPIF* 217
K RLVAQ Q+EG+DF ETFAPVA LEAI ILLA SCF ++ + ++ I
Sbjct: 1007 KPRLVAQGFTQDEGLDFGETFAPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAE 1066
Query: 218 MVQIE-------------VYKKKTIGV*NFF*AKLIL*KALYGLKQVPRIWYDSL 343
+V +E VYK L KALYGLKQ PR WY+ L
Sbjct: 1067 LVFVEQPLGFEDPKNPNHVYK---------------LSKALYGLKQAPRAWYERL 1106
>emb|CAN71808.1| hypothetical protein VITISV_011726 [Vitis vinifera]
Length = 553
Score = 88.6 bits (218), Expect = 3e-15
Identities = 65/167 (38%), Positives = 92/167 (55%), Gaps = 9/167 (5%)
Frame = +1
Query: 133 RSYLHFTCPFLF*ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGLKFFLGQINFIK----- 294
R L F C ++F LYQM++KS FLNG N + + G + F + K
Sbjct: 237 RMLLAFACF----KDFVLYQMNMKSAFLNGFINEEVFVEQPLGFQSFNFPNHVFKLKKAL 292
Query: 295 -GLVWFKTSTPHMV**S*LFLLNGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNE 465
GL S + S L F GK+ TTLF+ K D LLVQIY D+I+ ATN
Sbjct: 293 YGLKQAPRSWYERL--SKFLLKKCFKMGKIDTTLFIKIKENDMLLVQIYIDDVIFGATNV 350
Query: 466 VLYKIFSKLLQGKFKMIMMGELNFFIEIQVQQCQKGGYIPYSKYTKE 606
L + FSK + +F+M MMGELNFF+E+Q++Q ++G +I +KY ++
Sbjct: 351 SLCEEFSKCMYSEFEMSMMGELNFFLELQIKQLKEGTFINQAKYIRD 397
Score = 74.3 bits (181), Expect = 5e-11
Identities = 50/108 (46%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKI--------SSFTKWILNP 208
K RLVAQ QEE ID++ETFAPVA LEAI +LLA +CFK S+F +N
Sbjct: 207 KARLVAQGFNQEEVIDYEETFAPVARLEAIRMLLAFACFKDFVLYQMNMKSAFLNGFINE 266
Query: 209 IF*MVQIEVYKKKTIGV*NFF*AKLI--L*KALYGLKQVPRIWYDSLS 346
EV+ ++ +G +F + L KALYGLKQ PR WY+ LS
Sbjct: 267 -------EVFVEQPLGFQSFNFPNHVFKLKKALYGLKQAPRSWYERLS 307
>emb|CAE03600.2| OSJNBb0004A17.2 [Oryza sativa Japonica Group]
Length = 2256
Score = 88.2 bits (217), Expect = 4e-15
Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 15/247 (6%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGL---KFFLGQINFIKGLVWFKTSTPHMV** 339
+ FKL+QMD+KS FLNG + K G KF K L K +
Sbjct: 1365 KGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYER 1424
Query: 340 S*LFLL-NGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFK 510
FLL NGF G V TLF G D LLVQIY DII+ ++ L FS ++ +F+
Sbjct: 1425 LKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFE 1484
Query: 511 MIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNLYDYHVKIDKG*GRHI 690
M MMGEL FF+ +Q++Q ++G ++ +KY+KE ++ + +
Sbjct: 1485 MSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDED 1544
Query: 691 G*QTNSR--------YVHLLLLLP*TRHSICLTSICSTSKTIPTNLIKVPLKEIFKYLKG 846
G + + R ++L P S+CL C+ + P + +K +F+Y+K
Sbjct: 1545 GEEVDQREYRSMIGSLLYLTASRPDIHFSVCL---CARFQASPRTSHRQAVKRMFRYIKS 1601
Query: 847 TSSYDLY 867
T Y ++
Sbjct: 1602 TLEYGIW 1608
Score = 73.6 bits (179), Expect = 9e-11
Identities = 50/106 (47%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +2
Query: 35 GTSLMIKGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF 214
G+ + K RLVAQ Q EG+DF+ETFAPVA LEAI ILLA + K F + +
Sbjct: 1320 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1379
Query: 215 -*MVQIEVYKKKTIGV*N--FF*AKLIL*KALYGLKQVPRIWYDSL 343
+++ EVY K+ G N F L KALYGLKQ PR WY+ L
Sbjct: 1380 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERL 1425
>gb|ABF94836.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1948
Score = 88.2 bits (217), Expect = 4e-15
Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 15/247 (6%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGL---KFFLGQINFIKGLVWFKTSTPHMV** 339
+ FKL+QMD+KS FLNG + K G KF K L K +
Sbjct: 1365 KGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYER 1424
Query: 340 S*LFLL-NGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFK 510
FLL NGF G V TLF G D LLVQIY DII+ ++ L FS ++ +F+
Sbjct: 1425 LKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFE 1484
Query: 511 MIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNLYDYHVKIDKG*GRHI 690
M MMGEL FF+ +Q++Q ++G ++ +KY+KE ++ + +
Sbjct: 1485 MSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDED 1544
Query: 691 G*QTNSR--------YVHLLLLLP*TRHSICLTSICSTSKTIPTNLIKVPLKEIFKYLKG 846
G + + R ++L P S+CL C+ + P + +K +F+Y+K
Sbjct: 1545 GEEVDQREYRSMIGSLLYLTASRPDIHFSVCL---CARFQASPRTSHRQAVKRMFRYIKS 1601
Query: 847 TSSYDLY 867
T Y ++
Sbjct: 1602 TLEYGIW 1608
Score = 73.6 bits (179), Expect = 9e-11
Identities = 50/106 (47%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +2
Query: 35 GTSLMIKGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF 214
G+ + K RLVAQ Q EG+DF+ETFAPVA LEAI ILLA + K F + +
Sbjct: 1320 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1379
Query: 215 -*MVQIEVYKKKTIGV*N--FF*AKLIL*KALYGLKQVPRIWYDSL 343
+++ EVY K+ G N F L KALYGLKQ PR WY+ L
Sbjct: 1380 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERL 1425
>gb|ABF93543.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 2124
Score = 88.2 bits (217), Expect = 4e-15
Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 15/247 (6%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGL---KFFLGQINFIKGLVWFKTSTPHMV** 339
+ FKL+QMD+KS FLNG + K G KF K L K +
Sbjct: 1365 KGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYER 1424
Query: 340 S*LFLL-NGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFK 510
FLL NGF G V TLF G D LLVQIY DII+ ++ L FS ++ +F+
Sbjct: 1425 LKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFE 1484
Query: 511 MIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNLYDYHVKIDKG*GRHI 690
M MMGEL FF+ +Q++Q ++G ++ +KY+KE ++ + +
Sbjct: 1485 MSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDED 1544
Query: 691 G*QTNSR--------YVHLLLLLP*TRHSICLTSICSTSKTIPTNLIKVPLKEIFKYLKG 846
G + + R ++L P S+CL C+ + P + +K +F+Y+K
Sbjct: 1545 GEEVDQREYRSMIGSLLYLTASRPDIHFSVCL---CARFQASPRTSHRQAVKRMFRYIKS 1601
Query: 847 TSSYDLY 867
T Y ++
Sbjct: 1602 TLEYGIW 1608
Score = 73.6 bits (179), Expect = 9e-11
Identities = 50/106 (47%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +2
Query: 35 GTSLMIKGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF 214
G+ + K RLVAQ Q EG+DF+ETFAPVA LEAI ILLA + K F + +
Sbjct: 1320 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1379
Query: 215 -*MVQIEVYKKKTIGV*N--FF*AKLIL*KALYGLKQVPRIWYDSL 343
+++ EVY K+ G N F L KALYGLKQ PR WY+ L
Sbjct: 1380 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERL 1425
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa Japonica
Group]
Length = 2145
Score = 88.2 bits (217), Expect = 4e-15
Identities = 75/247 (30%), Positives = 115/247 (46%), Gaps = 15/247 (6%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGL---KFFLGQINFIKGLVWFKTSTPHMV** 339
+ FKL+QMD+KS FLNG + K G KF K L K +
Sbjct: 1386 KGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYER 1445
Query: 340 S*LFLL-NGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFK 510
FLL NGF G V TLF G D LLVQIY DII+ ++ L FS ++ +F+
Sbjct: 1446 LKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFE 1505
Query: 511 MIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNLYDYHVKIDKG*GRHI 690
M MMGEL FF+ +Q++Q ++G ++ +KY+KE ++ + +
Sbjct: 1506 MSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDED 1565
Query: 691 G*QTNSR--------YVHLLLLLP*TRHSICLTSICSTSKTIPTNLIKVPLKEIFKYLKG 846
G + + R ++L P S+CL C+ + P + +K +F+Y+K
Sbjct: 1566 GEEVDQREYRSMIGSLLYLTASRPDIHFSVCL---CARFQASPRTSHRQAVKRMFRYIKS 1622
Query: 847 TSSYDLY 867
T Y ++
Sbjct: 1623 TLEYGIW 1629
Score = 73.6 bits (179), Expect = 9e-11
Identities = 50/106 (47%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +2
Query: 35 GTSLMIKGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF 214
G+ + K RLVAQ Q EG+DF+ETFAPVA LEAI ILLA + K F + +
Sbjct: 1341 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1400
Query: 215 -*MVQIEVYKKKTIGV*N--FF*AKLIL*KALYGLKQVPRIWYDSL 343
+++ EVY K+ G N F L KALYGLKQ PR WY+ L
Sbjct: 1401 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERL 1446
>emb|CCI55376.1| PH01B035L11.21 [Phyllostachys edulis]
Length = 2029
Score = 87.4 bits (215), Expect = 6e-15
Identities = 73/258 (28%), Positives = 121/258 (46%), Gaps = 26/258 (10%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGL---KFFLGQINFIKGL--------VWFKT 315
+ FKLYQMD+KS FLNG + + G K+ K L W++
Sbjct: 1572 KGFKLYQMDVKSAFLNGLIEEEVYVRQPPGFENPKYPNHVFKLSKALYGLKQAPRAWYER 1631
Query: 316 STPHMV**S*LFLLNGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSK 489
++ L +GF GKV TLF+ G D LLVQIY DII+ ++ L FS
Sbjct: 1632 LKSYL-------LSHGFEMGKVDKTLFIRRHGSDFLLVQIYVDDIIFGGSSHTLVSQFSD 1684
Query: 490 LLQGKFKMIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKN------------ 633
++ +F+M MMGEL+FF+ Q++Q ++G ++ KYT++ ++ +
Sbjct: 1685 VMSSEFEMSMMGELSFFLGFQIKQTREGTFLHQGKYTRDLLKRFDMSDGKPVSTPMASTA 1744
Query: 634 HLNLYDYHVKIDKG*GRHIG*QTNSRYVHLLLLLP*TRHSICLTSICSTSKTIPTNLIKV 813
+L+ + +D+ R + ++L P S+CL C+ + P +
Sbjct: 1745 YLDPDEDGEPVDQKEFRSM----IGSLLYLTASRPDIHFSVCL---CARFQASPRVSHRQ 1797
Query: 814 PLKEIFKYLKGTSSYDLY 867
+K IF+YL+ T Y ++
Sbjct: 1798 AVKRIFRYLRATIDYGIW 1815
Score = 70.5 bits (171), Expect = 8e-10
Identities = 47/106 (44%), Positives = 61/106 (57%), Gaps = 3/106 (2%)
Frame = +2
Query: 35 GTSLMIKGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF 214
G + K RLVAQ Q EG+DF+ETFAPVA LEAI ILLA + K + + +
Sbjct: 1527 GVIIRNKARLVAQGFSQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLYQMDVKSAFL 1586
Query: 215 -*MVQIEVYKKKTIGV*N--FF*AKLIL*KALYGLKQVPRIWYDSL 343
+++ EVY ++ G N + L KALYGLKQ PR WY+ L
Sbjct: 1587 NGLIEEEVYVRQPPGFENPKYPNHVFKLSKALYGLKQAPRAWYERL 1632
>gb|ABA98847.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1417
Score = 87.4 bits (215), Expect = 6e-15
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 7/161 (4%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGLK---FFLGQINFIKGLVWFKTSTPHMV** 339
+ FKLYQMD+KS FLNG + K G + F K L K +
Sbjct: 1008 KGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDR 1067
Query: 340 S*LFLL-NGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFK 510
FLL GFT GKV TLFV + G + L VQIY DII+ + L F++ ++ +F+
Sbjct: 1068 LKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHALVVDFAETMRREFE 1127
Query: 511 MIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKN 633
M MMGEL++F+ +Q++Q +G ++ +KYTK+ +R + +N
Sbjct: 1128 MSMMGELSYFLRLQIKQTPQGTFVHQTKYTKDLLRRLKMEN 1168
Score = 70.9 bits (172), Expect = 6e-10
Identities = 48/100 (48%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF-*MVQI 229
K RLVAQ Q E +DFDETFAPVA +EAI +LLA + K + + + +Q
Sbjct: 969 KTRLVAQGFTQVESLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQE 1028
Query: 230 EVYKKKTIGV*N--FF*AKLIL*KALYGLKQVPRIWYDSL 343
EVY K+ G N F L KALYGLKQ PR WYD L
Sbjct: 1029 EVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRL 1068
>gb|AAW57789.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1799
Score = 87.0 bits (214), Expect = 8e-15
Identities = 75/247 (30%), Positives = 114/247 (46%), Gaps = 15/247 (6%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGL---KFFLGQINFIKGLVWFKTSTPHMV** 339
+ FKL+QMD+KS FLNG + K G KF K L K +
Sbjct: 1390 KGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYER 1449
Query: 340 S*LFLL-NGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFK 510
FLL NGF G V TLF G D LLVQIY DII+ ++ L F ++ +F+
Sbjct: 1450 LKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFDVMSREFE 1509
Query: 511 MIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKNHLNLYDYHVKIDKG*GRHI 690
M MMGEL FF+ +Q++Q ++G ++ +KY+KE ++ + +
Sbjct: 1510 MSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDED 1569
Query: 691 G*QTNSR--------YVHLLLLLP*TRHSICLTSICSTSKTIPTNLIKVPLKEIFKYLKG 846
G + + R ++L P S+CL C+ + P + +K IF+Y+K
Sbjct: 1570 GEEVDQREYRSMIGSLLYLTASRPDIHFSVCL---CARFQASPRTSHRQAVKRIFRYIKS 1626
Query: 847 TSSYDLY 867
T Y ++
Sbjct: 1627 TLEYGIW 1633
Score = 73.6 bits (179), Expect = 9e-11
Identities = 50/106 (47%), Positives = 62/106 (58%), Gaps = 3/106 (2%)
Frame = +2
Query: 35 GTSLMIKGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF 214
G+ + K RLVAQ Q EG+DF+ETFAPVA LEAI ILLA + K F + +
Sbjct: 1345 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1404
Query: 215 -*MVQIEVYKKKTIGV*N--FF*AKLIL*KALYGLKQVPRIWYDSL 343
+++ EVY K+ G N F L KALYGLKQ PR WY+ L
Sbjct: 1405 NGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERL 1450
>emb|CAE04585.2| OSJNBb0006N15.2 [Oryza sativa Japonica Group]
Length = 1134
Score = 86.7 bits (213), Expect = 1e-14
Identities = 59/161 (36%), Positives = 88/161 (54%), Gaps = 7/161 (4%)
Frame = +1
Query: 172 ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGLK---FFLGQINFIKGLVWFKTSTPHMV** 339
+ FKLYQMD+KS FLNG + K G + F K L K +
Sbjct: 784 KGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDR 843
Query: 340 -S*LFLLNGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIYSATNEVLYKIFSKLLQGKFK 510
FL GFT GKV TLFV + G + L VQIY DII+ + L F++ ++ +F+
Sbjct: 844 LKNFFLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHALVVDFAETMRREFE 903
Query: 511 MIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVRH*RRKN 633
M MMGEL++F+ +Q++Q +G ++ +KYTK+ +R + +N
Sbjct: 904 MSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMEN 944
Score = 73.9 bits (180), Expect = 7e-11
Identities = 49/100 (49%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Frame = +2
Query: 53 KGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF-*MVQI 229
K RLVAQ Q EG+DFDETFAPVA +EAI +LLA + K + + + +Q
Sbjct: 745 KARLVAQGFTQVEGLDFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQE 804
Query: 230 EVYKKKTIGV*N--FF*AKLIL*KALYGLKQVPRIWYDSL 343
EVY K+ G N F L KALYGLKQ PR WYD L
Sbjct: 805 EVYVKQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRL 844
>gb|EOY19086.1| Cysteine-rich RLK (RECEPTOR-like protein kinase) 8, putative
[Theobroma cacao]
Length = 275
Score = 86.3 bits (212), Expect = 1e-14
Identities = 59/175 (33%), Positives = 93/175 (53%), Gaps = 14/175 (8%)
Frame = +1
Query: 133 RSYLHFTCPFLF*ENFKLYQMDIKSNFLNGS-NRSL*KKNNRGLKFFLGQINFIK----- 294
R L F C F+ NFKLYQMD+KS FLNG + + G + F + +K
Sbjct: 76 RLLLAFAC-FM---NFKLYQMDVKSAFLNGFIQEEVYVEQPPGFEDFEKPDHVLKLHKAL 131
Query: 295 ------GLVWFKTSTPHMV**S*LFLLNGFTTGKVYTTLFVFEKGQDCLLVQIY--DIIY 450
W++ + +V G+ G + TTLF+ + D ++ QIY DI++
Sbjct: 132 YELKQAPRAWYERLSKFLV-------EKGYVRGNIDTTLFIKKYLNDLIVFQIYVDDIVF 184
Query: 451 SATNEVLYKIFSKLLQGKFKMIMMGELNFFIEIQVQQCQKGGYIPYSKYTKEEVR 615
TNE L K F+K +QG+F M MMGEL +F+ +Q++Q +KG +I +Y ++ ++
Sbjct: 185 CVTNEALCKNFAKEMQGEFDMSMMGELKYFLGLQIKQSEKGIFINQERYIQDMLK 239
Score = 70.5 bits (171), Expect = 8e-10
Identities = 48/107 (44%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Frame = +2
Query: 35 GTSLMIKGRLVAQR*CQEEGIDFDETFAPVAHLEAICILLAHSCFKKISSFTKWILNPIF 214
G + K RLVAQ QEE ID+ ETFAPVA +EAI +LLA +CF + + +
Sbjct: 40 GNVVRNKARLVAQGYNQEERIDYVETFAPVARIEAIRLLLAFACFMNFKLYQMDVKSAFL 99
Query: 215 -*MVQIEVYKKKTIGV*NFF*AK--LIL*KALYGLKQVPRIWYDSLS 346
+Q EVY ++ G +F L L KALY LKQ PR WY+ LS
Sbjct: 100 NGFIQEEVYVEQPPGFEDFEKPDHVLKLHKALYELKQAPRAWYERLS 146