BLASTX nr result
ID: Rehmannia26_contig00017521
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00017521
(1227 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 151 6e-34
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 141 5e-31
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 137 9e-30
ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia... 136 2e-29
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 135 3e-29
ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621... 132 2e-28
ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein A... 131 5e-28
ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626... 131 6e-28
ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein A... 131 6e-28
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 129 2e-27
ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein A... 127 7e-27
ref|XP_004298219.1| PREDICTED: uncharacterized protein LOC101304... 127 7e-27
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 127 1e-26
gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japo... 126 2e-26
ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group] g... 126 2e-26
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 125 3e-26
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 125 4e-26
ref|XP_006494016.1| PREDICTED: uncharacterized protein LOC102608... 124 6e-26
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 121 7e-25
ref|XP_002466618.1| hypothetical protein SORBIDRAFT_01g011130 [S... 121 7e-25
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 151 bits (381), Expect = 6e-34
Identities = 93/305 (30%), Positives = 146/305 (47%), Gaps = 2/305 (0%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
KY + + SF KS+L A+ V+ +G+ I DG+ T IW PW+ + S
Sbjct: 897 KYFPRSNFLEARVSPNMSFTCKSILSARAVIQKGMCRVIGDGRDTTIWGDPWVPSLERYS 956
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSF 361
E +N+ WN E++N F P E+ AI + Q D +W
Sbjct: 957 IAATEGVSEDDGPQKVCELISNDRWNVELLNTLFQPWESTAIQRIPVALQKKPDQWMWMM 1016
Query: 362 TKDLKFSVKSAY--QMLREKKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKC 535
+K+ +F+V+SAY ++L ++K+ +L +K IW KI K+K F WK
Sbjct: 1017 SKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKLWQK------IWKAKIPPKVKLFSWKA 1070
Query: 536 IHNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDK 715
IHN L + KRGM+I+ C CGE+ ET EH ++ CD + R W ++PL I+
Sbjct: 1071 IHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPL---RIHTGN 1127
Query: 716 MKVGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQKKWFSDLEVISFALQEW 895
++ G + V + + L I W +W RN W F+KK + EV+ A++
Sbjct: 1128 IEAGSFRIWVESLLDTHKDTEWWALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAVRGV 1187
Query: 896 NEFDK 910
EF++
Sbjct: 1188 MEFEE 1192
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 141 bits (356), Expect = 5e-31
Identities = 83/289 (28%), Positives = 145/289 (50%), Gaps = 7/289 (2%)
Frame = +2
Query: 53 SFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNF---HSPSPVGIEDAHNQLTWV 223
SF W+S++ AK +L+ G+R I G TR+W+ PW+ +F + S + I D H +V
Sbjct: 785 SFGWRSIMAAKPLLLSGLRRTIGSGMLTRVWEDPWIPSFPPRPAKSILNIRDTH---LYV 841
Query: 224 NQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSFTKDLKFSVKSAYQM 403
N L+ +W + + P + I+ + + D WSFTK ++VKS Y
Sbjct: 842 NDLIDPVTKQWKLGRLQELVDPSDIPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGYWA 901
Query: 404 LREKKSEDHCEAE---GSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCIHNILPSAVQLNK 574
R+ S C+ S+ ++ + +W +K K KHF W+C+ L + +L
Sbjct: 902 ARD-LSRPTCDLPFQGPSVSALQAQ-----VWKIKTTRKFKHFEWQCLSGCLATNQRLFS 955
Query: 575 RGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDKMKVGEWWNAVCQI 754
R + E +C CG E E+I H LF C +++IW L+P+ S + + ++ +
Sbjct: 956 RHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRNSLFYNFDFLLSR 1015
Query: 755 KGNFE-GRNRIQLSTYILWWLWKTRNAWKFQKKWFSDLEVISFALQEWN 898
F+ + +++ +ILW++WK+RN + F+ S ++ FA+QE N
Sbjct: 1016 GKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQEAN 1064
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 137 bits (345), Expect = 9e-30
Identities = 86/318 (27%), Positives = 150/318 (47%), Gaps = 19/318 (5%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
+Y +K N S SF WKS+ +A+ ++ QG+R I +G++ +W PW+ + +
Sbjct: 888 RYFSKSDPLNAPLGSRPSFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKA 947
Query: 182 PVGIEDAH-------NQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNK 340
++ +H N + V L+ + +WN +V+ F E I++ + + +
Sbjct: 948 AQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETR 1007
Query: 341 DHMVWSFTKDLKFSVKSAYQMLRE---KKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNK 511
D W +++ +SVKS Y ++ E +++ + SLD + ++ IW L + K
Sbjct: 1008 DRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVLQPSLDPIFQQ-----IWKLDVPPK 1062
Query: 512 LKHFLWKCIHNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPL- 688
+ HFLW+C++N L A L R + E C C ET+ H LF C A+ W ++PL
Sbjct: 1063 IHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLP 1122
Query: 689 -----DWSGIYHDKMKVGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQKKW 853
+W+ M + + K E + L +ILW LWK RN F+ +
Sbjct: 1123 APPGGEWAESLFRNMH-----HVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGRE 1177
Query: 854 FSDLEVISFALQE---WN 898
F+ +VI A ++ WN
Sbjct: 1178 FTAPQVILKATEDMDAWN 1195
>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
thaliana] gi|7269807|emb|CAB79667.1| putative protein
[Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
putative reverse transcriptase/RNA-dependent DNA
polymerase [Arabidopsis thaliana]
gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
[Arabidopsis thaliana]
Length = 575
Score = 136 bits (343), Expect = 2e-29
Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 16/314 (5%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
+Y +K N S SF+WKS+ ++ +L QG R + +G+ IW H WL + + +
Sbjct: 91 RYFHKSDPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASA 150
Query: 182 PVGIEDAHNQ-------LTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNK 340
+ ++ Q + V+ L+ ++ EW +++ F E + I + +
Sbjct: 151 ALRMQRVPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRIL 210
Query: 341 DHMVWSFTKDLKFSVKSAYQMLRE---KKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNK 511
D W +T ++VKS Y +L + K+S +E SL+ + ++ IW + K
Sbjct: 211 DSYTWDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQK-----IWKSQTSPK 265
Query: 512 LKHFLWKCIHNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLA--P 685
++HFLWKC+ N LP A L R + E C C ET+ H LF C A+ W ++ P
Sbjct: 266 IQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIP 325
Query: 686 LDWSGIYHDKMKVGEWWNAVCQI-KGNFEGRNRIQLSTYILWWLWKTRNAWKFQKKWFSD 862
+ G + D + V +W V + GN + QL ++LW LWK RN F+ + F+
Sbjct: 326 IPLGGEWADSIYVNLYW--VFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNA 383
Query: 863 LEVISFA---LQEW 895
EV+ A L+EW
Sbjct: 384 QEVLRRAEDDLEEW 397
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 773
Score = 135 bits (340), Expect = 3e-29
Identities = 90/310 (29%), Positives = 142/310 (45%), Gaps = 10/310 (3%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
KY K L + A S S+ WKS+L ++ +G+++ +G + ++W WL
Sbjct: 343 KYFPKERLLDAKATSQSSYAWKSILHGTKLISRGLKYIAGNGNNIQLWKDNWLPLNPPRP 402
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSF 361
PVG D+ V+ L+ + WN +++ K + I + + D + W +
Sbjct: 403 PVGTCDSIYSQLKVSDLLIEGR--WNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIY 460
Query: 362 TKDLKFSVKSAYQMLREKKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCIH 541
T D +SVKS Y +LR+ + H S + + + IW K+KHF W+ H
Sbjct: 461 THDGNYSVKSGYHLLRKLSQQQHASLP-SPNEVSAQTVFTNIWKQNAPPKIKHFWWRSAH 519
Query: 542 NILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIW-----KLAPLD--WSG 700
N LP+A L +R + + C+ CGE SE + H LF C +K IW KL P D S
Sbjct: 520 NALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLCPGDSLMSN 579
Query: 701 IYHDKMKVGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQKKWFSDLEVISF 880
++ ++ + K N R + L +I W +WK RN F K +S + I
Sbjct: 580 SFNQNLESIQ--------KLNQSARKDVSLFPFIGWRIWKMRNDLIFNNKRWSIPDSIQK 631
Query: 881 AL---QEWNE 901
AL Q+W E
Sbjct: 632 ALIDQQQWKE 641
>ref|XP_006485449.1| PREDICTED: uncharacterized protein LOC102621413 [Citrus sinensis]
Length = 2303
Score = 132 bits (333), Expect = 2e-28
Identities = 77/283 (27%), Positives = 139/283 (49%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
+Y + S+ SF+W+S+L + V+ +G R+ I +G + ++ W+ +
Sbjct: 865 RYFKSCSFLDAKPGSNPSFIWRSILWGRQVIQKGARWRIGNGSNILVYKDNWIPRPDTFK 924
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSF 361
P+ T V +LM D NN WN +N+ F ++ EAI+ + + D M+W +
Sbjct: 925 PISPPTLPIDTT-VGELMDDENN-WNVAKLNQHFMQEDTEAILKIPLPRSQKVDEMMWHY 982
Query: 362 TKDLKFSVKSAYQMLREKKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCIH 541
K ++SVKS YQ+ + K+ D GS K+ + +WS+++ K+K F+W+
Sbjct: 983 DKHGEYSVKSGYQIALKLKAPDEPSNSGS-----NSKRWKAVWSMELPEKMKIFMWRAAR 1037
Query: 542 NILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDKMK 721
N+LP+A L KR + +C+GC E ET+ H L C A++IW A S + +
Sbjct: 1038 NLLPTAENLWKRKCLKDPICQGCNREVETVRHALLDCKAARKIWYHAT---SSVQISNAQ 1094
Query: 722 VGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQKK 850
+ + ++ + G+ + + + W +W RN F+ K
Sbjct: 1095 NQDILEFIYEVWSTW-GKTKAEQTIAFCWAIWFARNKRIFEGK 1136
>ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 420
Score = 131 bits (330), Expect = 5e-28
Identities = 81/303 (26%), Positives = 140/303 (46%), Gaps = 5/303 (1%)
Frame = +2
Query: 23 LFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWL---WNFHSPSPV-- 187
+ K+ DS+ W+SL+K +L QGVRF I G S +W+ PWL + F S V
Sbjct: 1 MLEATVKAGDSYAWRSLMKGVDLLKQGVRFQIGTGSSVSVWNDPWLPRPYTFKPYSGVME 60
Query: 188 GIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSFTK 367
G+ED V L+ + + W +++ + F E E I + + D ++W F K
Sbjct: 61 GLEDL-----MVGDLIDPDTSTWMVDLLEELFYADEVEMIRKIPLSIRSPDDRLIWHFDK 115
Query: 368 DLKFSVKSAYQMLREKKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCIHNI 547
+SV+S Y + ++ + S K + +W +++ K+K F+W+ + NI
Sbjct: 116 HGLYSVRSGYHLAGGVNADQSRGSSSS--PAGSNKTWKQVWKVRVLPKVKSFVWRLMRNI 173
Query: 548 LPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDKMKVG 727
LP+ V L+K+ E LC C E+ET H C A + ++PL H +
Sbjct: 174 LPTKVALSKKICMEEQLCPFCRTENETALHLFKECSGAACMLIISPLGLRARNHGANNME 233
Query: 728 EWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQKKWFSDLEVISFALQEWNEFD 907
EW + + ++++ +LW LW RN +Q F + +++++ E+
Sbjct: 234 EWVVGMMDVLTT----GQVEMFFMLLWALWVERNNMVWQGTSFDPINTVTWSMLLLQEYQ 289
Query: 908 KLH 916
LH
Sbjct: 290 NLH 292
>ref|XP_006491472.1| PREDICTED: uncharacterized protein LOC102626455 [Citrus sinensis]
Length = 1452
Score = 131 bits (329), Expect = 6e-28
Identities = 81/283 (28%), Positives = 141/283 (49%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
+Y +N S+ SF+W+S+L V+ +GVR+ I DGK ++ W+ +
Sbjct: 982 RYYKNSTFWNAKVGSNPSFIWRSILWGSQVIKKGVRWRIGDGKKVLVYKDKWIPRPATFQ 1041
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSF 361
P+ + ++ T V L+ D+ N+W + + + F ++ EAI+ + +D ++W F
Sbjct: 1042 PISPKTLPHE-TVVADLI-DSENKWRVDRLEQHFMKEDIEAILKILLPSGKEEDEVLWHF 1099
Query: 362 TKDLKFSVKSAYQMLREKKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCIH 541
K ++SVKS YQ+ + + E+ S R+ K W L + K+K F+W+ +
Sbjct: 1100 DKKGEYSVKSGYQLALNQNFPNEPESSNSSSRLWKIP-----WMLDLPEKVKIFMWRALK 1154
Query: 542 NILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDKMK 721
NILP+A L KR E +C+ C + ET+ H L C A++IW LAPL + K
Sbjct: 1155 NILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAPLI---VQPSKDH 1211
Query: 722 VGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQKK 850
++++A+ Q + +L W +W RN + F+ K
Sbjct: 1212 NQDFFSAI-QEMWSRSSTAEAELMIVYCWVIWSARNKFIFEGK 1253
>ref|XP_006483194.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 765
Score = 131 bits (329), Expect = 6e-28
Identities = 81/283 (28%), Positives = 141/283 (49%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
+Y +N S+ SF+W+S+L V+ +GVR+ I DGK ++ W+ +
Sbjct: 295 RYYKNSTFWNAKVGSNPSFIWRSILWGSQVIKKGVRWRIGDGKKVLVYKDKWIPRPATFQ 354
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSF 361
P+ + ++ T V L+ D+ N+W + + + F ++ EAI+ + +D ++W F
Sbjct: 355 PISPKTLPHE-TVVADLI-DSENKWRVDRLEQHFMKEDIEAILKILLPSGKEEDEVLWHF 412
Query: 362 TKDLKFSVKSAYQMLREKKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCIH 541
K ++SVKS YQ+ + + E+ S R+ K W L + K+K F+W+ +
Sbjct: 413 DKKGEYSVKSGYQLALNQNFPNEPESSNSSSRLWKIP-----WMLDLPEKVKIFMWRALK 467
Query: 542 NILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDKMK 721
NILP+A L KR E +C+ C + ET+ H L C A++IW LAPL + K
Sbjct: 468 NILPTAENLWKRRSLQEPICQRCKLQVETVSHVLIECKAARKIWDLAPLI---VQPSKDH 524
Query: 722 VGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQKK 850
++++A+ Q + +L W +W RN + F+ K
Sbjct: 525 NQDFFSAI-QEMWSRSSTAEAELMIVYCWVIWSARNKFIFEGK 566
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 129 bits (325), Expect = 2e-27
Identities = 83/305 (27%), Positives = 151/305 (49%), Gaps = 7/305 (2%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
+Y ++ + K++ S+ W+S+L + +L++G R + +G ST +W PW+++
Sbjct: 890 RYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSVWMDPWIYDNDPRL 949
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSF 361
P+ + N V+ L+ + + + + F P + E I+ ++ D VW
Sbjct: 950 PLQKHFSVNLDLRVHDLINVEDRCRRRDRLEELFYPADIEIIVKRNPVVSMD-DFWVWLH 1008
Query: 362 TKDLKFSVKSAYQMLREKKSED---HCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWK 532
+K ++SVKS Y + + + + S + ++++ IWS K+K FLW+
Sbjct: 1009 SKSGEYSVKSGYWLAFQTNKPELIREARVQPSTNGLKEK-----IWSTLTSPKIKLFLWR 1063
Query: 533 CIHNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHD 712
+ + LP A Q+ +RGM I+ C+ CGEE E+I H LF C A+++W L+ + S
Sbjct: 1064 ILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFGFQ 1123
Query: 713 KMKVGEWWNAVCQIKGNFEGRNRIQLS-TYILWWLWKTRNAWKFQKKWFSDL---EVISF 880
+ + ++KG +I+ S ++LW LWK R+ F+ FS L E I
Sbjct: 1124 NSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIRD 1183
Query: 881 ALQEW 895
+QEW
Sbjct: 1184 DVQEW 1188
>ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 968
Score = 127 bits (320), Expect = 7e-27
Identities = 87/290 (30%), Positives = 132/290 (45%), Gaps = 6/290 (2%)
Frame = +2
Query: 53 SFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWL---WNFHSPSPVGIEDAHNQLTWV 223
SF+W L+ K ++ G+R+ I G +IW WL W+F +P ++ V
Sbjct: 501 SFVWPGLVWGKDLMCAGIRWRIGSGDLVKIWGDKWLPTPWSFKVVTPCFMDPNAR----V 556
Query: 224 NQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSFTKDLKFSVKSAYQM 403
+QLM W+ + + F P + E I++ + D VW F+ D +FSVKS Y
Sbjct: 557 SQLMSQPGM-WDMNFIKQHFLPVDVEKILAVPLCDGNGGDVAVWHFSDDGRFSVKSGYWF 615
Query: 404 LREKKSEDHCEAEGSLD-RMRKRKQ*RTIWSLKIKNKLKHFLWKCIHNILPSAVQLNKRG 580
E K + + GS IW L + NK+K FLW+ H LP +L KR
Sbjct: 616 GMEMKRLEKGSSSGSGHVNSNSINIWSLIWDLLVPNKVKLFLWRACHAFLPCVERLFKRN 675
Query: 581 MDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDKMKVGEWWN--AVCQI 754
+ C CGE ET+ H L C AK++WK W G+Y ++ + + + +
Sbjct: 676 ICSHSGCGRCGEGEETVVHSLCWCRVAKKVWKCT--YWRGVY-KSWQISSFADLFGLVAM 732
Query: 755 KGNFEGRNRIQLSTYILWWLWKTRNAWKFQKKWFSDLEVISFALQEWNEF 904
+GN + +L I WWLWK RN KK +++ L+ EF
Sbjct: 733 EGNIK---NTELFALICWWLWKDRNEVFHGKKGLEPRQIVEKCLEWQREF 779
>ref|XP_004298219.1| PREDICTED: uncharacterized protein LOC101304768 [Fragaria vesca
subsp. vesca]
Length = 1687
Score = 127 bits (320), Expect = 7e-27
Identities = 77/264 (29%), Positives = 131/264 (49%), Gaps = 5/264 (1%)
Frame = +2
Query: 53 SFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWL---WNFHSPSPVGIEDAHNQLTWV 223
SF+W+SL+ K +L G+R+ + +G + RIW+ WL W+F +P ++ T V
Sbjct: 909 SFIWRSLVWGKKLLCAGIRWRVGNGTAIRIWEDKWLPSPWSFRVVTPRFMDSN----TRV 964
Query: 224 NQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSFTKDLKFSVKSAYQM 403
+ LM + + W+ + F P +A+ I+S + ++ D +W +T D ++VKS Y +
Sbjct: 965 STLMT-SPSMWDVIFIQTHFLPVDADKILSIPVCERSGSDVAIWHYTNDGYYTVKSGYWL 1023
Query: 404 LRE-KKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCIHNILPSAVQLNKRG 580
E K+ + G IW L + NK+K FLW+ H LP +L KR
Sbjct: 1024 AMELKQVGKSTSSSGEKGETNSNSVWSIIWGLSVPNKVKLFLWRACHAFLPCVERLFKRK 1083
Query: 581 MDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDKMKVGEWWNAVCQIKG 760
+ +C CG SE++ H L+ C A+++WK + W K + + + ++
Sbjct: 1084 VCSSDICSRCGGASESVLHSLWACRIAQKVWKYS---WLAGVVKLWKFQSFSDLLHRVA- 1139
Query: 761 NFEGRNR-IQLSTYILWWLWKTRN 829
EG N+ + L + WW+WK RN
Sbjct: 1140 -MEGTNKELDLFGLVCWWIWKCRN 1162
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1715
Score = 127 bits (318), Expect = 1e-26
Identities = 83/289 (28%), Positives = 137/289 (47%), Gaps = 5/289 (1%)
Frame = +2
Query: 53 SFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFH---SPSPVGIEDAHNQLTWV 223
S+ W S+ + K +L QG+R + DG++T+IW+ PWL + P+ ED V
Sbjct: 1249 SYGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLPTLPPRPARGPILDEDMK-----V 1303
Query: 224 NQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSFTKDLKFSVKSAYQM 403
L ++N EW+ I P++ + S + +D W++T++ +++V+S Y +
Sbjct: 1304 ADLWRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWV 1363
Query: 404 LREKKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCIHNILPSAVQLNKRGM 583
+ E L+ KQ IW LKI K+KHF+W+C+ L + QL R +
Sbjct: 1364 ATHVNLTEE-EIINPLEGDVPLKQ--EIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNI 1420
Query: 584 DIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDKMKVGEWWNAVCQIK-- 757
+ C+ C ETI H +F C A+ +W+ A S + E + Q K
Sbjct: 1421 PADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKN 1480
Query: 758 GNFEGRNRIQLSTYILWWLWKTRNAWKFQKKWFSDLEVISFALQEWNEF 904
N N + + +I+W LWK+RN + FQ+ +V A QE E+
Sbjct: 1481 QNLPILNGL-MPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEW 1528
>gb|EAZ40645.1| hypothetical protein OsJ_25114 [Oryza sativa Japonica Group]
Length = 560
Score = 126 bits (316), Expect = 2e-26
Identities = 70/278 (25%), Positives = 135/278 (48%), Gaps = 2/278 (0%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
KY +F+ ++ S+ W+S+ + L G+ + + +G + IW PW+ + H+
Sbjct: 126 KYYPSGNIFSAKKCANMSYTWRSICRGLLTLRDGMIWRVGNGAAINIWSDPWIPSDHTRR 185
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSF 361
P+ N +T V +L+ + W+ E++ + F P++ I + + +++ D + W +
Sbjct: 186 PI-TPRGRNLVTRVEELIDPSTGSWDVELLTQTFWPEDVNMIRTIPVHIEMD-DMLAWHY 243
Query: 362 TKDLKFSVKSAYQMLREKKSEDHCEAEGSLDRMRKRKQ*--RTIWSLKIKNKLKHFLWKC 535
+ FSVKSAY++ R+ + + L ++ + +W +++ K+KHF+W+
Sbjct: 244 DEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQLPGKVKHFIWRF 303
Query: 536 IHNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDK 715
HNIL V L +RGMD++ C C +E H F C + K++W+ L+ I +
Sbjct: 304 SHNILALRVNLQQRGMDLDSRCIICNRMNEDAGHLFFKCKKVKKVWQENNLE---ILRQE 360
Query: 716 MKVGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRN 829
+ V + N + I L++ LW W RN
Sbjct: 361 LAEKRSGREVMETVFNRPAK-EILLASITLWQWWSERN 397
>ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa
Japonica Group]
Length = 1453
Score = 126 bits (316), Expect = 2e-26
Identities = 70/278 (25%), Positives = 135/278 (48%), Gaps = 2/278 (0%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
KY +F+ ++ S+ W+S+ + L G+ + + +G + IW PW+ + H+
Sbjct: 1019 KYYPSGNIFSAKKCANMSYTWRSICRGLLTLRDGMIWRVGNGAAINIWSDPWIPSDHTRR 1078
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSF 361
P+ N +T V +L+ + W+ E++ + F P++ I + + +++ D + W +
Sbjct: 1079 PI-TPRGRNLVTRVEELIDPSTGSWDVELLTQTFWPEDVNMIRTIPVHIEMD-DMLAWHY 1136
Query: 362 TKDLKFSVKSAYQMLREKKSEDHCEAEGSLDRMRKRKQ*--RTIWSLKIKNKLKHFLWKC 535
+ FSVKSAY++ R+ + + L ++ + +W +++ K+KHF+W+
Sbjct: 1137 DEKGLFSVKSAYKVQRDGELQRRKRGSAGLSNGSTEREMYWKKVWKMQLPGKVKHFIWRF 1196
Query: 536 IHNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDK 715
HNIL V L +RGMD++ C C +E H F C + K++W+ L+ I +
Sbjct: 1197 SHNILALRVNLQQRGMDLDSRCIICNRMNEDAGHLFFKCKKVKKVWQENNLE---ILRQE 1253
Query: 716 MKVGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRN 829
+ V + N + I L++ LW W RN
Sbjct: 1254 LAEKRSGREVMETVFNRPAK-EILLASITLWQWWSERN 1290
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 125 bits (315), Expect = 3e-26
Identities = 79/305 (25%), Positives = 141/305 (46%), Gaps = 5/305 (1%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWL-WNFHSP 178
+Y K + + S S+ W+S++ A+ ++ +G+ + G S +W+ PW+ F P
Sbjct: 672 RYFRKSNPLDSIKSYSPSYGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRP 731
Query: 179 SPVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWS 358
+ G L V L+ +N WN +++ + F P++ I + I +D + W
Sbjct: 732 AKYGGSIVDPSLK-VKSLIDSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWH 790
Query: 359 FTKDLKFSVKSAYQMLREKKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCI 538
FTK ++VKS Y R +E L ++ IW ++ KL+HFLW+ +
Sbjct: 791 FTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAY-----IWKVQCPPKLRHFLWQIL 845
Query: 539 HNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWS-GIYHDK 715
+P + L KRG+ + C CG E+I H LF C A++IW L+ + + GI+
Sbjct: 846 SGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSN 905
Query: 716 MKVGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQKKWFSDLEVISFALQE- 892
+ +I + +I+W++WK RN F+ +E++ A++E
Sbjct: 906 SIFTNLDHLFWRIPSGVDSAP----YPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEA 961
Query: 893 --WNE 901
W E
Sbjct: 962 QSWQE 966
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 125 bits (314), Expect = 4e-26
Identities = 78/306 (25%), Positives = 145/306 (47%), Gaps = 5/306 (1%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
+Y + + S S+ W+S+L + +L+QG+R I +G+ T +W WL + +
Sbjct: 887 RYFSNSDFLSATRGSRPSYAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRR 946
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTK--IFKQVNKDHMVW 355
P+ N V+QL+ + WN ++ F ++ E I+ + FK+ D W
Sbjct: 947 PLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWKDVEIILKQRPLFFKE---DSFCW 1003
Query: 356 SFTKDLKFSVKSAYQMLREK---KSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFL 526
+ + +SVK+ Y+ L ++ + + + S++ + + IW+L K++ FL
Sbjct: 1004 LHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDK-----IWNLHTAPKIRIFL 1058
Query: 527 WKCIHNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIY 706
WK +H +P +L RG+ + C C E+ETI H LF C A+++W + L +G
Sbjct: 1059 WKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSE 1118
Query: 707 HDKMKVGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQKKWFSDLEVISFAL 886
+ + N + +S +ILW+LWK RNA F+ K ++ A
Sbjct: 1119 FSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAY 1178
Query: 887 QEWNEF 904
+ ++E+
Sbjct: 1179 EAYHEW 1184
>ref|XP_006494016.1| PREDICTED: uncharacterized protein LOC102608298 [Citrus sinensis]
Length = 1570
Score = 124 bits (312), Expect = 6e-26
Identities = 79/287 (27%), Positives = 140/287 (48%), Gaps = 6/287 (2%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
+Y N S+ SF+W+S+L + V+ +G R+ I +G+S + WL P
Sbjct: 802 RYFQHKDFMNARLGSNPSFIWRSILWGRQVISKGSRWRIGNGQSIMLHKENWL-----PR 856
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNE---WNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMV 352
P+ + + L+ + NE WN ++++ F +AEAI+ + ++ KD ++
Sbjct: 857 PLTFKPISKPSLPADALVAELINEEHTWNEGLIHRHFAKIDAEAIVRILLPRRPMKDEVI 916
Query: 353 WSFTKDLKFSVKSAYQMLREKKSEDHCEAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWK 532
W + + ++SVKS YQ+ K + + + Q IW L + K++ F W+
Sbjct: 917 WHYDRKCQYSVKSGYQIALNLKFPAKPTSSATSEN-----QWNAIWLLTLPEKIRIFAWR 971
Query: 533 CIHNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHD 712
N+LPSA L KR + E LC+ C ++ ETI H L C K+IWK+ + D
Sbjct: 972 AAKNLLPSAENLWKRKVIQEPLCQFCNKKLETIFHALVGCKVVKKIWKITR------FED 1025
Query: 713 KMKVG---EWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWKFQ 844
+K + + + ++K ++ I+L ILW +W +N+W F+
Sbjct: 1026 DLKDSVEQDMLSLLIELKLR-RSKDDIELLVTILWMIWNAQNSWIFK 1071
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 121 bits (303), Expect = 7e-25
Identities = 83/287 (28%), Positives = 131/287 (45%), Gaps = 8/287 (2%)
Frame = +2
Query: 2 KYLNKVGLFNVVAKSSDSFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPS 181
KY F S+ S+ W+S+ K VL G+ + + DG IW PW+ S
Sbjct: 1089 KYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRGWSRK 1148
Query: 182 PVGIEDAHNQLTWVNQLMKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSF 361
P+ A N +T V +L+ W+ +++++ F ++ AI S + ++ +D + W F
Sbjct: 1149 PMTPRGA-NLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEM-EDVLAWHF 1206
Query: 362 TKDLKFSVKSAYQMLRE---KKSEDHCEA-----EGSLDRMRKRKQ*RTIWSLKIKNKLK 517
F+VKSAY++ RE + S + C G D +K +W L + K+K
Sbjct: 1207 DARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKK------LWKLGVPGKIK 1260
Query: 518 HFLWKCIHNILPSAVQLNKRGMDIEVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWS 697
HFLW+ HN L L+ RGMD++ C CG +E H F C K++W+ L+
Sbjct: 1261 HFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLEEL 1320
Query: 698 GIYHDKMKVGEWWNAVCQIKGNFEGRNRIQLSTYILWWLWKTRNAWK 838
++ G+ N + I E N + LW WK RN K
Sbjct: 1321 RSMLEQQTSGK--NVLQSIYCRPE--NERTSAIVCLWQWWKERNEEK 1363
>ref|XP_002466618.1| hypothetical protein SORBIDRAFT_01g011130 [Sorghum bicolor]
gi|241920472|gb|EER93616.1| hypothetical protein
SORBIDRAFT_01g011130 [Sorghum bicolor]
Length = 463
Score = 121 bits (303), Expect = 7e-25
Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 2/262 (0%)
Frame = +2
Query: 53 SFLWKSLLKAKYVLVQGVRFCIADGKSTRIWDHPWLWNFHSPSPVGIEDAHNQLTWVNQL 232
S+ W+S+L V+ G+ + + DG IW PW+ P + H+ +T V +L
Sbjct: 2 SYSWRSILNGLKVVKMGMIWRVGDGVGLNIWSEPWIPRDSGRKPFTLR-GHHIITEVAEL 60
Query: 233 MKDNNNEWNTEIVNKFFGPQEAEAIMSTKIFKQVNKDHMVWSFTKDLKFSVKSAYQMLRE 412
+ +W+ +V F ++AE I++ ++ Q + + W + K FSVKSAY++ R+
Sbjct: 61 INPVTRQWDELLVRDIFWEEDAEVILALPVY-QGRSNMVAWHYDKHGVFSVKSAYKVARD 119
Query: 413 KKSEDHC-EAEGSLDRMRKRKQ*RTIWSLKIKNKLKHFLWKCIHNILPSAVQLNKRGMDI 589
+H + + + +W L NK+KHFLW+ +HN P L +RGM+I
Sbjct: 120 TYIRNHTSQGQQGGSNPGPLSLWKRVWKLSCPNKIKHFLWRFLHNSHPLRDNLIRRGMEI 179
Query: 590 EVLCEGCGEESETIEHFLFHCDRAKRIWKLAPLDWSGIYHDKMKVGEWWNAVCQIKGNFE 769
C C + E H F C A+++W+L G+ ++ + ++ + ++
Sbjct: 180 VPRCPVCNQVGEDGGHLFFKCGMARQVWELL-----GLSTEREVLANFYTPIDVVEFILR 234
Query: 770 GRNRIQLSTYI-LWWLWKTRNA 832
+L + LW+ W RNA
Sbjct: 235 ASESRKLMMIVALWYTWSERNA 256