BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00011274
         (737 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   149   9e-34
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...   147   4e-33
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]             141   2e-31
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]              141   2e-31
gb|EMJ08780.1| hypothetical protein PRUPE_ppa018489mg, partial [...   132   2e-28
gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japo...   130   6e-28
gb|ABA94593.2| retrotransposon protein, putative, unclassified [...   130   6e-28
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   129   8e-28
gb|AAC28197.1| contains similarity to reverse transcriptases [Ar...   125   1e-26
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   124   3e-26
gb|EPS61587.1| hypothetical protein M569_13207, partial [Genlise...   123   5e-26
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   123   5e-26
gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japo...   123   7e-26
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   123   7e-26
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...   123   7e-26
ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [S...   122   9e-26
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...   122   1e-25
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...   121   2e-25
gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse ...   120   5e-25
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   120   5e-25

>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  149 bits (376), Expect = 9e-34
 Identities = 77/244 (31%), Positives = 133/244 (54%)
 Frame = -1

Query: 737  KQASDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKI 558
            K  SDH  LLLDS+P      + F F++ W     +   ++R+W     G+ +    + +
Sbjct: 824  KIGSDHRPLLLDSNPKMLNKTRLFRFEQMWTTHEEYSDVIQRSWPPAFGGSAMRSWNRNL 883

Query: 557  GKCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIVLAKAYKEEER 378
              C  AL  WSKE+ +N +  + +    +  +  +   +   +   L   + K + ++E 
Sbjct: 884  LSCGKALKMWSKEKFSNPSVQVADLLSDIEKLHQSNPPDAHHQINILTDQVTKLWTQDEM 943

Query: 377  YWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYN 198
            YW Q++R+NWL+ GD+NS FFH  T+QRR+ N+I  +    G    S  D+  +  DY+ 
Sbjct: 944  YWHQRSRVNWLKLGDQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEADVALQFLDYFT 1003

Query: 197  SLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPL 18
            +L+Q+  P+    +L+ +  +++A MN++L+  V   E+KKA+FDL   KAPG DG S +
Sbjct: 1004 ALYQSNGPQQWEEVLDFVDTAVTAEMNKILSSPVSLLEVKKAVFDLGATKAPGPDGFSGI 1063

Query: 17   FFQH 6
            F+Q+
Sbjct: 1064 FYQN 1067


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score =  147 bits (371), Expect = 4e-33
 Identities = 85/241 (35%), Positives = 124/241 (51%)
 Frame = -1

Query: 731 ASDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIGK 552
           ASDH  ++         GK+ F FDKRWI        + + W  D  G +  Q  +K+  
Sbjct: 3   ASDHSPVIATIADKIPRGKQNFRFDKRWIGKDGLLEAISQGWNLD-SGFREGQFVEKLTN 61

Query: 551 CRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIVLAKAYKEEERYW 372
           CR A+  W K       + I++ K  L  +       +  E  +L + L +AY++EE+YW
Sbjct: 62  CRRAISKWRKSLIPFGRQTIEDLKAELD-VAQRDDDRSREEITELTLRLKEAYRDEEQYW 120

Query: 371 SQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYNSL 192
            QK+R  W++ GD NSKFFH  T QRR  NRI  +   +G      +DI+     Y+ +L
Sbjct: 121 YQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWSIEDDDIQNIAVSYFQNL 180

Query: 191 FQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPLFF 12
           F T NP+V    L  +   I+  +N +LT    + E++ ALF + P KAPG DGM+ LFF
Sbjct: 181 FTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFMIHPEKAPGPDGMTALFF 240

Query: 11  Q 9
           Q
Sbjct: 241 Q 241


>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
          Length = 1270

 Score =  141 bits (356), Expect = 2e-31
 Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 3/246 (1%)
 Frame = -1

Query: 734 QASDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIG 555
           + SDH  +L+     +   + +F FDKR++   +    + R W     GT +  V  ++ 
Sbjct: 181 RGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNI-SVADRLR 239

Query: 554 KCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIV---LAKAYKEE 384
            CR +L +W K+   NS   I   +  L   K    V  W  + ++ ++   LAKAY+EE
Sbjct: 240 ACRKSLSSWKKQNNLNSLDKINQLEAALE--KEQSLV--WPIFQRVSVLKKDLAKAYREE 295

Query: 383 ERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDY 204
           E YW QK+R  WLR G++NSK+FH    Q R+  RIE +   +G +  S     +    Y
Sbjct: 296 EAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAY 355

Query: 203 YNSLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMS 24
           + +LF+++NP        G+   +S  MN+ L  +V   EIK+A+F + P  APG DGMS
Sbjct: 356 FGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMS 415

Query: 23  PLFFQH 6
            LFFQH
Sbjct: 416 ALFFQH 421


>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
          Length = 1254

 Score =  141 bits (356), Expect = 2e-31
 Identities = 84/246 (34%), Positives = 128/246 (52%), Gaps = 3/246 (1%)
 Frame = -1

Query: 734 QASDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIG 555
           + SDH  +L+     +   + +F FDKR++   +    + R W     GT +  V  ++ 
Sbjct: 184 RGSDHRPVLIKLMSSQDSYRGQFRFDKRFLFKEDVKEAIIRTWSRGKHGTNI-SVADRLR 242

Query: 554 KCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIV---LAKAYKEE 384
            CR +L +W K+   NS   I   +  L   K    V  W  + ++ ++   LAKAY+EE
Sbjct: 243 ACRKSLSSWKKQNNLNSLDKINQLEAALE--KEQSLV--WPIFQRVSVLKKDLAKAYREE 298

Query: 383 ERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDY 204
           E YW QK+R  WLR G++NSK+FH    Q R+  RIE +   +G +  S     +    Y
Sbjct: 299 EAYWKQKSRQKWLRSGNRNSKYFHAAVKQNRQRKRIEKLKDVNGNMQTSEAAKGEVAAAY 358

Query: 203 YNSLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMS 24
           + +LF+++NP        G+   +S  MN+ L  +V   EIK+A+F + P  APG DGMS
Sbjct: 359 FGNLFKSSNPSGFTDWFSGLVPRVSEVMNESLVGEVSAQEIKEAVFSIKPASAPGPDGMS 418

Query: 23  PLFFQH 6
            LFFQH
Sbjct: 419 ALFFQH 424


>gb|EMJ08780.1| hypothetical protein PRUPE_ppa018489mg, partial [Prunus persica]
          Length = 1146

 Score =  132 bits (331), Expect = 2e-28
 Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 5/244 (2%)
 Frame = -1

Query: 728 SDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIGKC 549
           SDH  L+L   P        F F+  W    +    ++R W  DI G     +   +G C
Sbjct: 128 SDHSPLVLYFAPKIQRRAGGFKFEAYWADEHDCGTIIQRGWKNDIVGDSFAALSANLGVC 187

Query: 548 RVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTE-----WVKLRIVLAKAYKEE 384
           R  L  WSKE+  N+   I    + LS ++     EN+       W ++ ++    +  E
Sbjct: 188 REELQKWSKEKFPNNLSRINLLMKSLSNLQSGPLEENYRHQESAIWDEMSVL----WSRE 243

Query: 383 ERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDY 204
           E YW Q++R+NWL  GD N+KFFH  T+QRR+ N+IE + K++G   +  + I +E   +
Sbjct: 244 ETYWKQRSRLNWLSAGDANTKFFHTTTLQRRQRNKIETLLKSEGNCISGDQAIREEFGIF 303

Query: 203 YNSLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMS 24
           + +LF++  P     IL  +  SI+ + N+ LT      E++ A+  L   KAPG DG  
Sbjct: 304 FGNLFKSGGPRNWGGILNCVHASITEAQNKRLTDPFSMEEVRTAVKQLGSLKAPGPDGFP 363

Query: 23  PLFF 12
            LF+
Sbjct: 364 GLFY 367


>gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japonica Group]
          Length = 1102

 Score =  130 bits (326), Expect = 6e-28
 Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 6/246 (2%)
 Frame = -1

Query: 728  SDHC--LLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIG 555
            SDHC   L L  +  +   KK   ++  W   P+    V+ +W+     + L  +   + 
Sbjct: 638  SDHCPISLQLSQEMKQPARKKILHYEICWEREPSLPEVVQESWVEAGTKSDLGDISAALR 697

Query: 554  KCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIV---LAKAYKEE 384
            K   +L +WSK +  N  + +Q  +++L+ +     +E + +   +R     + +    E
Sbjct: 698  KVMASLHSWSKVKFKNIGRELQKARKKLAEL-----LETYADSAAVRQASDHMNELLYRE 752

Query: 383  ERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDY 204
            E  W Q++RINWL+EGD+N++FFH   V R K NRI+++  + GT+  S   +EQ   +Y
Sbjct: 753  EMLWLQRSRINWLKEGDRNTRFFHSKAVWRAKKNRIQSLKDSAGTVHRSATAMEQLATEY 812

Query: 203  YNSLFQTTNPEVDHHILEGIPQS-ISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGM 27
            +  ++ + +P +DH I+    QS +SA MN+ L   + + EI  A+F + P KAPG DG 
Sbjct: 813  FQEVY-SADPSLDHSIVSSFFQSKVSAQMNEALCSDLTEEEISTAIFQIGPLKAPGPDGF 871

Query: 26   SPLFFQ 9
            S  F+Q
Sbjct: 872  SAKFYQ 877


>gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1469

 Score =  130 bits (326), Expect = 6e-28
 Identities = 76/246 (30%), Positives = 130/246 (52%), Gaps = 6/246 (2%)
 Frame = -1

Query: 728  SDHC--LLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIG 555
            SDHC   L L  +  +   KK   ++  W   P+    V+ +W+     + L  +   + 
Sbjct: 631  SDHCPISLQLSQEMKQPARKKILHYEICWEREPSLPEVVQESWVEAGTKSDLGDISAALR 690

Query: 554  KCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIV---LAKAYKEE 384
            K   +L +WSK +  N  + +Q  +++L+ +     +E + +   +R     + +    E
Sbjct: 691  KVMASLHSWSKVKFKNIGRELQKARKKLAEL-----LETYADSAAVRQASDHMNELLYRE 745

Query: 383  ERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDY 204
            E  W Q++RINWL+EGD+N++FFH   V R K NRI+++  + GT+  S   +EQ   +Y
Sbjct: 746  EMLWLQRSRINWLKEGDRNTRFFHSKAVWRAKKNRIQSLKDSAGTVHRSATAMEQLATEY 805

Query: 203  YNSLFQTTNPEVDHHILEGIPQS-ISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGM 27
            +  ++ + +P +DH I+    QS +SA MN+ L   + + EI  A+F + P KAPG DG 
Sbjct: 806  FQEVY-SADPSLDHSIVSSFFQSKVSAQMNEALCSDLTEEEISTAIFQIGPLKAPGPDGF 864

Query: 26   SPLFFQ 9
            S  F+Q
Sbjct: 865  SAKFYQ 870


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  129 bits (325), Expect = 8e-28
 Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 3/244 (1%)
 Frame = -1

Query: 728  SDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAW---LTDIKGTQLYQVQQKI 558
            SDH  +++D        + +F +D+R   + +F   V+R W    +D  G       +K+
Sbjct: 582  SDHAPVIIDIAEEVCTKRGQFRYDRRHFQFEDFVDSVQRGWNRGRSDSHGGYY----EKL 637

Query: 557  GKCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIVLAKAYKEEER 378
              CR  L  W +  +TN+A+ I+  K R+   + +  + + T  ++LR  L +AY++EE 
Sbjct: 638  HCCRQELAKWKRRTKTNTAEKIETLKYRVDAAERDHTLPHQTI-LRLRQDLNQAYRDEEL 696

Query: 377  YWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYN 198
            YW  K+R  W+  GD+N+ FF+  T  R+  NRI+ IT A G      + I +  E+Y+ 
Sbjct: 697  YWHLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFA 756

Query: 197  SLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPL 18
             LF TT       I+ GI   ++  MN  L   V D E++ A+F +  ++APG DG +  
Sbjct: 757  DLFTTTQTSDWEEIISGIAPKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAA 816

Query: 17   FFQH 6
            F+ H
Sbjct: 817  FYHH 820


>gb|AAC28197.1| contains similarity to reverse transcriptases [Arabidopsis
           thaliana] gi|7267156|emb|CAB77868.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 1077

 Score =  125 bits (314), Expect = 1e-26
 Identities = 77/243 (31%), Positives = 117/243 (48%), Gaps = 1/243 (0%)
 Frame = -1

Query: 734 QASDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIG 555
           + SDH  L+   D  +   K  F +D+     P   + +   W    K     +V  ++ 
Sbjct: 197 EGSDHRPLVTSFDHVQKKTKNIFRYDRTLKDNPEISKLMNETW----KSNPSAKVDYRLH 252

Query: 554 KCRVALINWSKEQRTNSAKIIQNCKERLS-GIKVNGCVENWTEWVKLRIVLAKAYKEEER 378
            CR AL+NWSKE   NS K I + + +L   +  +   ++  + +   ++LA  Y++EE 
Sbjct: 253 LCRAALLNWSKEHHLNSQKEILSLRVQLEEALTDDAATQDSVDLLNQNLLLA--YRKEET 310

Query: 377 YWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYN 198
           +W Q++R  WL  GDKNS FFH  T  RR  N I  I  + GT      +I + I DY+ 
Sbjct: 311 FWKQRSRNLWLALGDKNSCFFHAATNSRRAINTISVIENSAGTSVYEDSEIIETISDYFQ 370

Query: 197 SLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPL 18
            +F +   +    + E +   I+  MN  L       EIK+A   + P+KAPG DG S  
Sbjct: 371 DIFTSQEGDRTSVVAEALSPCITTDMNNTLISLPTVAEIKQACLSIHPDKAPGRDGFSAS 430

Query: 17  FFQ 9
           FFQ
Sbjct: 431 FFQ 433


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score =  124 bits (311), Expect = 3e-26
 Identities = 67/220 (30%), Positives = 110/220 (50%)
 Frame = -1

Query: 668 FVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIGKCRVALINWSKEQRTNSAKIIQ 489
           F +DKRW+    F   +   W      T    ++ KI  CR  +  W +  + +SA  IQ
Sbjct: 240 FKYDKRWVQREGFKDLLCNFWSQQSTKTNALMME-KIASCRREISKWKRVSKPSSAVRIQ 298

Query: 488 NCKERLSGIKVNGCVENWTEWVKLRIVLAKAYKEEERYWSQKARINWLREGDKNSKFFHV 309
             + +L         +   E  +L+  L++ Y  EE++W +K+RI W+R GD+N+K+FH 
Sbjct: 299 ELQFKLDAATKQIPFDR-RELARLKKELSQEYNNEEQFWQEKSRIMWMRNGDRNTKYFHA 357

Query: 308 YTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYNSLFQTTNPEVDHHILEGIPQSIS 129
            T  RR  NRI+ +   +G    S ED+ +  E Y+  LF + +       LE +   +S
Sbjct: 358 ATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKKLFASEDVGYTVEELENLTPLVS 417

Query: 128 ASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPLFFQ 9
             MN  L   +   E+++A F ++P+K PG DGM+   +Q
Sbjct: 418 DQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQ 457


>gb|EPS61587.1| hypothetical protein M569_13207, partial [Genlisea aurea]
          Length = 475

 Score =  123 bits (309), Expect = 5e-26
 Identities = 79/247 (31%), Positives = 125/247 (50%), Gaps = 7/247 (2%)
 Frame = -1

Query: 728 SDHCLLLLDSDPPRA----MGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQK 561
           SDH  L + S PP A       +RF F+ RW+  P  D  +  AW T  +G     +Q K
Sbjct: 217 SDHAPLWIQSAPPSAGDGLRKSRRFRFEARWMQLPGCDSTIRTAW-TSSQGPPS-TLQPK 274

Query: 560 IGKCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVK-LRIVLAKAYKEE 384
           +G  R++L+ W + Q +     I+  +  L+ I V+   + +    K L+  LA   ++E
Sbjct: 275 LGTTRISLLKWYQHQISPIKANIKRVETELATIAVSTRDDIFMAREKQLQCELAGYLQQE 334

Query: 383 ERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDY 204
           E +W Q+++ +WL +GD+N+ +FH     RR+ NRI +I  +DG    S   I   I DY
Sbjct: 335 ELFWKQRSKTHWLAKGDRNTAYFHACASGRRECNRISSIMDSDGRQQDSPHGIHSAILDY 394

Query: 203 YNSLFQTT--NPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDG 30
           +N +F +T   PE+       I   ++ SM  +L+      E+  A+  + P  APG DG
Sbjct: 395 FNRIFSSTMPPPELLAATTRSISNRLTDSMKTMLSVPFTKEEVWPAIKQMKPLSAPGPDG 454

Query: 29  MSPLFFQ 9
             P+FFQ
Sbjct: 455 FPPIFFQ 461


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  123 bits (309), Expect = 5e-26
 Identities = 78/241 (32%), Positives = 117/241 (48%)
 Frame = -1

Query: 734 QASDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIG 555
           + SDH  L+     P     K F FD+R          V+  W    + + LY    KI 
Sbjct: 162 EGSDHRPLVTYFGAPPLKRSKPFRFDRRLREKEEIRALVKEVWELARQDSVLY----KIS 217

Query: 554 KCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIVLAKAYKEEERY 375
           +CR ++I W+KEQ +NSAK I+  ++ L    ++  + + +    +   L  AY++EE +
Sbjct: 218 RCRQSIIKWTKEQNSNSAKAIKKAQQALESA-LSADIPDPSLIGSITQELEAAYRQEELF 276

Query: 374 WSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYNS 195
           W Q +R+ WL  GD+N  +FH  T  RR  N +  I    G      E I   I  Y+ +
Sbjct: 277 WKQWSRVQWLNSGDRNKGYFHATTRTRRMLNNLSVIEDGSGQEFHEEEQIASTISSYFQN 336

Query: 194 LFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPLF 15
           +F T+N      + E +   IS+  N+ L       EIK+ALF +S +KAPG DG S  F
Sbjct: 337 IFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFSISADKAPGPDGFSASF 396

Query: 14  F 12
           F
Sbjct: 397 F 397


>gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japonica Group]
          Length = 1494

 Score =  123 bits (308), Expect = 7e-26
 Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 2/242 (0%)
 Frame = -1

Query: 728  SDHCLLLLDSDPPRAMGKKRFV--FDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIG 555
            SDH  LLL+        ++  +  F+  W    +F+     +W        L  V+ K+ 
Sbjct: 468  SDHVPLLLEKGGNMQQRRRSKINCFEAVWERVKSFNSIEHESWDDGGLAKNLGDVRTKLA 527

Query: 554  KCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIVLAKAYKEEERY 375
                 L  WS+++  N  K I+ C+  L  +++ G  ++  +  +L+I L +    EE +
Sbjct: 528  YTMENLKRWSRDKIGNIKKSIERCRRELEEMRMRGREDSEPDVHRLKIFLQELLHREEIW 587

Query: 374  WSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYNS 195
            W Q++RI WL+EGD+N+++FH+    R + N I+ + ++DG +C+  E++ +    ++  
Sbjct: 588  WKQRSRITWLKEGDRNTRYFHLKASWRARKNLIKKLRRSDGMMCSKEEELGEIARSFFRD 647

Query: 194  LFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPLF 15
            L+          +L      I+  MN +LT    D EI  ALF + P KAPG DG    F
Sbjct: 648  LYTKDESLNPGELLNMFEPKITDEMNGMLTKPFTDEEISDALFQIGPLKAPGPDGFPARF 707

Query: 14   FQ 9
            FQ
Sbjct: 708  FQ 709


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score =  123 bits (308), Expect = 7e-26
 Identities = 70/242 (28%), Positives = 123/242 (50%)
 Frame = -1

Query: 728  SDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIGKC 549
            SDH  +L+  +       K F FD R I  P F R V+ +W T+ + ++   + ++I  C
Sbjct: 375  SDHKPVLVHFNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTN-RNSRSTPITERISSC 433

Query: 548  RVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIVLAKAYKEEERYWS 369
            R A+         NS + I+  +  L+    +    +     +L+  LAKA+ +EE YW 
Sbjct: 434  RQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWK 493

Query: 368  QKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYNSLF 189
            QK+R  W++EGD+N+ +FH  T  R   NR+  I    G +    ++I    +D++ ++F
Sbjct: 494  QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIF 553

Query: 188  QTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPLFFQ 9
             T   +V          +++ ++N  LT +  DTEI  A+  +  +KAPG DG++  F++
Sbjct: 554  STNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYK 613

Query: 8    HC 3
            +C
Sbjct: 614  NC 615


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score =  123 bits (308), Expect = 7e-26
 Identities = 70/242 (28%), Positives = 123/242 (50%)
 Frame = -1

Query: 728  SDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIGKC 549
            SDH  +L+  +       K F FD R I  P F R V+ +W T+ + ++   + ++I  C
Sbjct: 601  SDHKPVLVHFNESFPRRSKLFRFDNRLIDIPTFKRIVQTSWRTN-RNSRSTPITERISSC 659

Query: 548  RVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIVLAKAYKEEERYWS 369
            R A+         NS + I+  +  L+    +    +     +L+  LAKA+ +EE YW 
Sbjct: 660  RQAMARLKHASNLNSEQRIKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWK 719

Query: 368  QKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYNSLF 189
            QK+R  W++EGD+N+ +FH  T  R   NR+  I    G +    ++I    +D++ ++F
Sbjct: 720  QKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMFTGDKEIGNHAQDFFTNIF 779

Query: 188  QTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPLFFQ 9
             T   +V          +++ ++N  LT +  DTEI  A+  +  +KAPG DG++  F++
Sbjct: 780  STNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYK 839

Query: 8    HC 3
            +C
Sbjct: 840  NC 841


>ref|XP_002450418.1| hypothetical protein SORBIDRAFT_05g005061 [Sorghum bicolor]
           gi|241936261|gb|EES09406.1| hypothetical protein
           SORBIDRAFT_05g005061 [Sorghum bicolor]
          Length = 753

 Score =  122 bits (307), Expect = 9e-26
 Identities = 73/248 (29%), Positives = 121/248 (48%), Gaps = 8/248 (3%)
 Frame = -1

Query: 728 SDHCLLLLDSDPPR-----AMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQ 564
           SDHC +LL   P           K F ++  W         +E+ W        +  ++ 
Sbjct: 222 SDHCPILLSHVPDERNEGGGCQGKPFRYELMWETNERLSSLIEQIWKNGQHCNSVKDMKD 281

Query: 563 KIGKCRVALINWSKEQRTNSAKIIQNCKERLSGIKVN---GCVENWTEWVKLRIVLAKAY 393
           K+      L +W  +      K ++  K+RL  ++ +     V    + +  RI+L    
Sbjct: 282 KLFHLGEELKSWGGKTFGVVRKELRVQKKRLEQLRADPSRNTVSEEEQKIVNRIILLNY- 340

Query: 392 KEEERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEI 213
            +EE  W Q++RI WL EGD N+KFFH    +RR  NRI+ + + DG+ C + +++ Q +
Sbjct: 341 -QEEIMWRQRSRITWLHEGDSNTKFFHQRASRRRIRNRIDKLNRPDGSECTNVDELHQMV 399

Query: 212 EDYYNSLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLD 33
            D+Y +LF++      + +L+ IP+ ++  MN  L     +TE+K ALF + P K+PG D
Sbjct: 400 VDFYRNLFESEGTSNMNLVLDHIPRKVTDDMNLFLCAPFNETEVKNALFQMFPTKSPGPD 459

Query: 32  GMSPLFFQ 9
           G    FFQ
Sbjct: 460 GFPAHFFQ 467


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
           Arabidopsis thaliana retrotransposon Ta11-1
           gi|976278|gb|AAA75254.1| reverse transcriptase
           [Arabidopsis thaliana]
          Length = 1333

 Score =  122 bits (306), Expect = 1e-25
 Identities = 75/243 (30%), Positives = 115/243 (47%)
 Frame = -1

Query: 737 KQASDHCLLLLDSDPPRAMGKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKI 558
           K+ SDH  +L+     +   +  F FDKR  + PN    + +AW    +   L  V  K+
Sbjct: 219 KRGSDHRPVLVRLTKTKEEYRGNFRFDKRLFNQPNVKETIVQAWNGSQRNENLL-VLDKL 277

Query: 557 GKCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIVLAKAYKEEER 378
             CR AL  W KE   NS+  I   +  L   + +G       +  L+  L KA  +EE 
Sbjct: 278 KHCRSALSRWKKENNINSSTRITQARAALELEQSSGFPRADLVF-SLKNDLCKANHDEEV 336

Query: 377 YWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDYYN 198
           +WSQK+R  W+  GDKN+ FFH      R    I+ +   +G       +     E Y++
Sbjct: 337 FWSQKSRAKWMHSGDKNTSFFHASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFS 396

Query: 197 SLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMSPL 18
            LF++T+P     + E     ++ SMN  L   V   EI++A+F +  + APG+DG +  
Sbjct: 397 DLFKSTDPSSFVDLFEDYQPRVTESMNNTLIAAVSKNEIREAVFAIRSSSAPGVDGFTGF 456

Query: 17  FFQ 9
           FFQ
Sbjct: 457 FFQ 459


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score =  121 bits (304), Expect = 2e-25
 Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 6/247 (2%)
 Frame = -1

Query: 731  ASDHCLLLLDSDPPRAMG-----KKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQ 567
            +SDHC LL ++DPP + G     K+RF+F+  W+        VER WL  +       V 
Sbjct: 504  SSDHCPLLFENDPPMSRGGNWRRKRRFLFEDMWLTHEGCRGVVERQWLFGVNS-----VV 558

Query: 566  QKIGKCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWT-EWVKLRIVLAKAYK 390
             K+ +    L  W++E   +  K + + +E L  ++      N   +  ++  +L    +
Sbjct: 559  GKLEQVAGGLKRWNQETFGSVKKKVASLREELDVLQRQPPTSNIICKRNEVECLLDGVLE 618

Query: 389  EEERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIE 210
             EE  W Q+AR++W + GD+N++FFH    QR +SNRI  I   D    +   DI     
Sbjct: 619  REELLWKQRARVSWFKCGDRNTQFFHQTAKQRGRSNRICGILGEDNRWRSDVTDIGCVFV 678

Query: 209  DYYNSLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDG 30
             Y+ +LF      +D  I E +   + A+  + L       EI+ AL D++P+K+PG DG
Sbjct: 679  SYFRNLFTAGGGSMDETIFEAVTSRVDATSKKSLDQVYRREEIELALKDMNPSKSPGSDG 738

Query: 29   MSPLFFQ 9
            M   FFQ
Sbjct: 739  MPARFFQ 745


>gb|AAG13524.1|AC068924_29 putative non-LTR retroelement reverse transcriptase [Oryza sativa
           Japonica Group]
          Length = 1382

 Score =  120 bits (301), Expect = 5e-25
 Identities = 77/251 (30%), Positives = 130/251 (51%), Gaps = 10/251 (3%)
 Frame = -1

Query: 731 ASDHCLLLLDSDPPRAMGKKR------FVFDKRWIHWPNFDREVERAWLTDIKG-TQLYQ 573
           +SDH  + +D    R  G++R      F F+  W+   ++   VE +W     G   L  
Sbjct: 226 SSDHYAISIDLSR-RNHGQRRIPIQQGFRFEAAWLRAEDYREVVENSWRISSAGCVGLRG 284

Query: 572 VQQKIGKCRVALINWSKEQRTNSAKIIQNCKERLSGIK---VNGCVENWTEWVKLRIVLA 402
           V   + +  V+L +WSK    +  + I   + +L  ++   VN  V    + ++ +  L 
Sbjct: 285 VWSVLQQVAVSLKDWSKASFGSVRRKILKMERKLKSLRQSPVNDVVIQEEKLIEQQ--LC 342

Query: 401 KAYKEEERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIE 222
           + +++EE    Q++R++WLREGD+N+ FFH     RR++NRI+ + + DG+ C S E I+
Sbjct: 343 ELFEKEEIMARQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGIK 402

Query: 221 QEIEDYYNSLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAP 42
           +  E +Y +LF +   +    +L+ IP  +   +N  L  Q  + EIK ALF +   KAP
Sbjct: 403 RMAEVFYENLFSSEPCDSMEEVLDAIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAP 462

Query: 41  GLDGMSPLFFQ 9
           G DG   LF+Q
Sbjct: 463 GPDGFPALFYQ 473


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  120 bits (301), Expect = 5e-25
 Identities = 78/245 (31%), Positives = 121/245 (49%), Gaps = 5/245 (2%)
 Frame = -1

Query: 728 SDHCLLLLDSDPPRAM--GKKRFVFDKRWIHWPNFDREVERAWLTDIKGTQLYQVQQKIG 555
           SDH  LLL +    +   G K F F+  W+      + VE AW     G+    +  ++ 
Sbjct: 222 SDHAPLLLKTGVNDSFRRGNKLFKFEAMWLSKEECGKIVEEAW----NGSAGEDITNRLD 277

Query: 554 KCRVALINWSKEQRTNSAKIIQNCKERLSGIKVNGCVENWTEWVKLRIV---LAKAYKEE 384
           +   +L  W+ +   N  K  +     L+G++      +  E  + RIV   L + ++ E
Sbjct: 278 EVSRSLSTWATKTFGNLKKRKKEALTLLNGLQQRDPDASTLE--QCRIVSGDLDEIHRLE 335

Query: 383 ERYWSQKARINWLREGDKNSKFFHVYTVQRRKSNRIENITKADGTICASTEDIEQEIEDY 204
           E YW  +AR N +R+GDKN+K+FH    QR++ N I  +   +G      E+I   ++ Y
Sbjct: 336 ESYWHARARANEIRDGDKNTKYFHHKASQRKRRNTINELLDENGVWKKGREEICGVVQHY 395

Query: 203 YNSLFQTTNPEVDHHILEGIPQSISASMNQVLTCQVEDTEIKKALFDLSPNKAPGLDGMS 24
           +  LF T +P      LEG+   +S  MN  L       E+K+ALF + PNKAPG+DG+ 
Sbjct: 396 FEGLFATDSPVNMELALEGLSHCVSTDMNTALLMLPSGDEVKEALFAMHPNKAPGIDGLH 455

Query: 23  PLFFQ 9
            LFFQ
Sbjct: 456 ALFFQ 460