BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00011271
         (3838 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]      1574   0.0  
gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...  1568   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...  1567   0.0  
gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1553   0.0  
ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1551   0.0  
ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1546   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...  1519   0.0  
ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1513   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...  1509   0.0  
gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlise...  1500   0.0  
gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tu...  1498   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1495   0.0  
gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobro...  1490   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1473   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]     1469   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]      1466   0.0  
gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solan...  1453   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1422   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...  1421   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...  1413   0.0  

>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score = 1574 bits (4076), Expect = 0.0
 Identities = 774/1119 (69%), Positives = 917/1119 (81%), Gaps = 4/1119 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI V GFP L+ AE VK+FLE  TG GTV ALEVK SK G R +A+VQF N   AE 
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKKFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEF 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I+ LAS    LY+G  YL+AW+   DI+Q PRT+V  M+ VTLNFGCQ S +KF+VL  +
Sbjct: 61   IIDLASKG--LYYGPSYLKAWEMKTDIVQ-PRTYVEHMDGVTLNFGCQISDKKFAVLG-S 116

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
            + VS+KFG G+KK++F L H S +Y+LQLSYENIWQ+VL+ P+GQ A+ LL+QLFGAPRI
Sbjct: 117  KDVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLLLQLFGAPRI 176

Query: 3025 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 2846
            YK+L DS +S+F+ETPDDQW+RTTDFTPS IG SS LCL+   G++LPNF +SF +YKES
Sbjct: 177  YKRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFRNGVQLPNFSESFFYYKES 236

Query: 2845 QDPFRLETGVPFAAN--LALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 2672
             + F L+TG  F+ +  LALVPIVH P G+ELPY+ILFK+  L+Q GC PG  L+ NFF+
Sbjct: 237  MNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFFQ 296

Query: 2671 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 2492
            LVDP+R +I  IEHALEKLYY+KECCYDPV WL EQY++Y   R+ P SP I+LDDGLVY
Sbjct: 297  LVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKGRQLPKSPPITLDDGLVY 356

Query: 2491 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 2312
            V RV +TP +VYF GPEVNVSNRVLR+Y + ++NFLRVSFVDEEW+K++STDL P+ + G
Sbjct: 357  VRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSFVDEEWEKIHSTDLLPRASTG 416

Query: 2311 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 2132
            +   RT +YERILSTL+ G IIG+K+F+FLAFSSSQLRDNS+WMFA   GL A+ IR WM
Sbjct: 417  N-GTRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 475

Query: 2131 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1952
            GDFR IRNVAKYAARLGQSF SS ETLSVG  EVE I D+    +GT Y+FSDGIGKISA
Sbjct: 476  GDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVACSLHGTNYIFSDGIGKISA 535

Query: 1951 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1772
            DFA RV IKCG +  TPS+FQIRYGGYKGVVAVDP SS+KLSLR SMLKY+S N KLDVL
Sbjct: 536  DFAHRVTIKCGLQY-TPSSFQIRYGGYKGVVAVDPYSSMKLSLRKSMLKYESNNIKLDVL 594

Query: 1771 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1592
             WSKYQPC+LNRQ++TLLSTLGV D V + KQ EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 595  GWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDAILHDSLKAQEALELMSPGE 654

Query: 1591 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 1412
            N+NILKEML CGY PD EPFLSMMLQTFR+SKLLDLR + RIF+P  R MMGCLDE+  L
Sbjct: 655  NTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPNGRTMMGCLDESRTL 714

Query: 1411 GYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 1232
             YGQVFVQFSGAGR  F+EES+   D+ S +C+++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 715  EYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNVVVAKNPCLHPGDIRVLRAVD 774

Query: 1231 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAPTS 1052
            V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ DLIPPRQV  MDY+PAPT+
Sbjct: 775  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLIPPRQVQSMDYTPAPTT 834

Query: 1051 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 872
            +LDHDVTIEEVEEYFTNYI+NDSLGIIANAH VFAD+E +MA+S+PC +LA+LFSIAVDF
Sbjct: 835  QLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVDF 894

Query: 871  PKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEV 692
            PKTGVPAEIP  LR KEYPDFM+KPDK +Y S ++IGKLF++VK+  P  +SI +FT++V
Sbjct: 895  PKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLFQKVKNKTPQASSIATFTRDV 954

Query: 691  ARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFD 512
            AR+SYD DM VDGF DY+DEAF YK+EYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFD
Sbjct: 955  ARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD 1014

Query: 511  RRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDH 332
            RRKD EAI  AVR LR E R+WFK+ ++ DD  AKASAWYHVTYH  +WG YN GLKRDH
Sbjct: 1015 RRKDAEAIGVAVRCLRKEARAWFKRRSDIDDMLAKASAWYHVTYHHTYWGLYNEGLKRDH 1074

Query: 331  YISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRL 221
            +ISFPWCVYD+LI+IKK  +R+     ++SL  + SR+L
Sbjct: 1075 FISFPWCVYDQLIQIKKAKARKRPVPHLSSLGSQLSRKL 1113


>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score = 1568 bits (4061), Expect = 0.0
 Identities = 773/1122 (68%), Positives = 918/1122 (81%), Gaps = 5/1122 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI V GFP L+ AE VK FLE  TG GTV ALEVK SK G R +A+VQF N   AEI
Sbjct: 1    MGKTIQVFGFPYLLSAEAVKTFLENHTGNGTVYALEVKQSKGGRRAFAKVQFANNKSAEI 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I+ LAS    LY+G  YL+AW+    I+Q PRT+V  M+ VTLNFGCQ S +KF+VL  +
Sbjct: 61   IIDLASKG--LYYGPSYLKAWEMKTYIVQ-PRTYVQHMDGVTLNFGCQISDKKFAVLG-S 116

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
            + VS+KFG G+KK++F L + S +Y+LQLSYENIWQ+VL+ P+GQ A+ LL+QL GAPRI
Sbjct: 117  KVVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLLLQLSGAPRI 176

Query: 3025 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 2846
            YK+L DS +S+F+ETPDDQW+RTTDFTPS IG SS LCL+   G+RLPNF +SF +YKES
Sbjct: 177  YKRLEDSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLEFHNGVRLPNFSESFFYYKES 236

Query: 2845 QDPFRLETGVPFAAN---LALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFF 2675
             +   L+TG  F+ +   LALVPIVH P G+ELPY+ILFK+  L+Q GC PG  L+ NFF
Sbjct: 237  ANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKISSLIQHGCFPGLALNFNFF 296

Query: 2674 RLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLV 2495
            +LVDP+R +I  IEHALEKLYY+KECCYDPV WL EQY++Y   R+ P SP+I+LDDGLV
Sbjct: 297  QLVDPRRRNIACIEHALEKLYYLKECCYDPVRWLTEQYDEYLKRRQLPKSPSITLDDGLV 356

Query: 2494 YVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAA 2315
            YV RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K++STDL P+ + 
Sbjct: 357  YVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIHSTDLLPRAST 416

Query: 2314 GDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRW 2135
            G+   RT +Y RILSTL+ G +IG+KKF+FLAFSSSQLRDNS+WMFA   GL A+ IR W
Sbjct: 417  GN-GVRTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTW 475

Query: 2134 MGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKIS 1955
            MG F+ IRNVAKYAARLGQSF SS ETLSVG  EVE I D+    +GT Y+FSDGIGKIS
Sbjct: 476  MGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTNYIFSDGIGKIS 535

Query: 1954 ADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDV 1775
            ADFARRVA+KCG +  TPS FQIRYGGYKGVVAVDP SS+KLSLR SMLKY+S N KLDV
Sbjct: 536  ADFARRVAVKCGLQY-TPSCFQIRYGGYKGVVAVDPYSSMKLSLRNSMLKYESNNIKLDV 594

Query: 1774 LSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPG 1595
            L WSKYQPC+LNRQ++TLLSTLGVKD VF+ KQ EAV QLD IL D L+AQEAL+LMSPG
Sbjct: 595  LGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDTLKAQEALELMSPG 654

Query: 1594 ENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGI 1415
            EN+NILKEML CGY PD EPFLSMMLQTFR+SKLLDLR ++RIF+P  R MMGCLDE+  
Sbjct: 655  ENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRT 714

Query: 1414 LGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAI 1235
            L YGQVFVQF+G GR  FYEES+   D+ ST+C++++EGNVVVAKNPCLHPGD+RVL+A+
Sbjct: 715  LEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGNVVVAKNPCLHPGDIRVLRAV 774

Query: 1234 DVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAPT 1055
            DV ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ DL+PPRQ  PMDY+PAP+
Sbjct: 775  DVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDPDLVPPRQFQPMDYTPAPS 834

Query: 1054 SRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVD 875
            ++LDHDVTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA+LFSIAVD
Sbjct: 835  TQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKQLAQLFSIAVD 894

Query: 874  FPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 695
            FPKTGVPAEIP  LR KEYPDFM+KPDK +Y S ++IGKLF++VKD  P  +SI +FT +
Sbjct: 895  FPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEKVIGKLFQKVKDKTPQASSIANFTMD 954

Query: 694  VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 515
            VAR+SYD DM V+GF DY+DEAF YK+EYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 955  VARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTF 1014

Query: 514  DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRD 335
            DRRKD +AI  AVRSLR E R+WFK+ ++ DD  AKASAWYHVTYH  +WG YN GLKRD
Sbjct: 1015 DRRKDADAIGVAVRSLRKEARTWFKRRSDIDDMLAKASAWYHVTYHHTYWGFYNEGLKRD 1074

Query: 334  HYISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNL 215
            H+ISFPWC+YD+LI+IKK  +R+     ++SL  + SR+L L
Sbjct: 1075 HFISFPWCIYDQLIQIKKAKARKKPVLHLSSLGNQLSRKLVL 1116


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score = 1567 bits (4057), Expect = 0.0
 Identities = 775/1122 (69%), Positives = 912/1122 (81%), Gaps = 4/1122 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI V GFP L+ AE VK FLE+ TG GTV ALEVK SK G R +A+VQF +   A+ 
Sbjct: 1    MGKTIQVFGFPYLLSAEVVKSFLEKYTGYGTVCALEVKQSKGGSRAFAKVQFADNISADK 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I+ LA+   RLYFGS YL+AW+   DI+Q  R +V +M+ +TLNFGCQ S +KF+VL   
Sbjct: 61   IITLANN--RLYFGSSYLKAWEMKTDIVQL-RAYVDQMDGITLNFGCQISDDKFAVLGST 117

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
            E VS++FG G+KK  F L   S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 118  E-VSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176

Query: 3025 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 2846
            YK+L +S +S+F+ETPDDQW+RTTDF PS IG SS LCLQ   G+RLPNF++SF  Y E 
Sbjct: 177  YKRLENSCYSFFKETPDDQWVRTTDFPPSWIGLSSSLCLQFRRGVRLPNFEESFFHYAER 236

Query: 2845 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 2672
            ++   L+TG  F  +   ALVP V PP G+ +PY+ILFK+  LVQ GC+PGP L+  FFR
Sbjct: 237  ENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSLVQHGCIPGPALNVYFFR 296

Query: 2671 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 2492
            LVDP+R ++  IEHALEKLYYIKECCYDPV WL EQY+ Y   R+ P SP+I+LDDGLVY
Sbjct: 297  LVDPRRRNVACIEHALEKLYYIKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356

Query: 2491 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 2312
            V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YSTDL PK + G
Sbjct: 357  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416

Query: 2311 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 2132
                RT +YERILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA   GL A+ IR WM
Sbjct: 417  S-GVRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRAWM 475

Query: 2131 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1952
            GDF  I+NVAKYAARLGQSF SS ETLSV   E+E I D++   +GT YVFSDGIGKIS 
Sbjct: 476  GDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISG 533

Query: 1951 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1772
            DFA RVA KCG +  TPSAFQIRYGGYKGVV VDPDSS+KLSLR SM KY+S+N KLDVL
Sbjct: 534  DFAHRVASKCGLQY-TPSAFQIRYGGYKGVVGVDPDSSMKLSLRKSMSKYESDNIKLDVL 592

Query: 1771 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1592
             WSKYQPC+LNRQ+ITLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 593  GWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652

Query: 1591 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 1412
            N+NILK ML CGYKPD EPFLSMMLQTFR+SKLLDLR ++RIF+P  R MMGCLDE+  L
Sbjct: 653  NTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRTMMGCLDESRTL 712

Query: 1411 GYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 1232
             YGQVFVQF+GAG G F ++ +   ++ ST+ N++++GNVVVAKNPCLHPGD+RVLKA++
Sbjct: 713  EYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVVVAKNPCLHPGDIRVLKAVN 772

Query: 1231 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAPTS 1052
            VRALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ D+IPPRQV PM+Y PAP+ 
Sbjct: 773  VRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSI 832

Query: 1051 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 872
            +LDHDVTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA LFSIAVDF
Sbjct: 833  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 892

Query: 871  PKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEV 692
            PKTGVPAEIP  LR KEYPDFMDKPDK SY S R+IGKLFR+VKD AP  +SI +FT++V
Sbjct: 893  PKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFRKVKDKAPQASSIATFTRDV 952

Query: 691  ARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFD 512
            ARRSYD DMEVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTFD
Sbjct: 953  ARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTFD 1012

Query: 511  RRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDH 332
            RRKD EAIS AVR+LR E R+WFK+ N+ DD   KASAWYHVTYHP +WG YN GLKR H
Sbjct: 1013 RRKDAEAISVAVRALRKEARAWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRAH 1072

Query: 331  YISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNLR 212
            +ISFPWCVYD+LI+IKKD +R     +++SL  + S RL L+
Sbjct: 1073 FISFPWCVYDQLIQIKKDKARNRPVLNLSSLRAQLSHRLVLK 1114


>gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1115

 Score = 1553 bits (4020), Expect = 0.0
 Identities = 769/1123 (68%), Positives = 911/1123 (81%), Gaps = 5/1123 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI V GFP+L+ AE VK FLE+ TG GT+ ALEVK SK G R +A+VQFV+   A+ 
Sbjct: 1    MGKTIQVFGFPNLLSAEVVKLFLEKHTGYGTICALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I+ LAS   RLYFGS YL+AW+   DI+Q  R +V  M+ +TLNFGCQ S +KF+VL   
Sbjct: 61   IINLASK--RLYFGSSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISEDKFAVLGST 117

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
            E VS+KFG G+KK  F L   S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 118  E-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176

Query: 3025 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 2846
            YK+L +S +S+F+ETPDDQW+RTTDFTPS IG SS LCLQ   G+ LPNFQ+SF  Y E 
Sbjct: 177  YKRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 236

Query: 2845 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 2672
            ++   L+TG  F  +   ALVP V PP G+ +PY+ILFK+  LVQ GC+PGP L+  FFR
Sbjct: 237  ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFR 296

Query: 2671 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 2492
            LVDP+R ++  IE ALEKLYY+KECCYDPV WL EQY+ Y   R+ P SP+I+LDDGLVY
Sbjct: 297  LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 356

Query: 2491 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 2312
            V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YST+L PK + G
Sbjct: 357  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG 416

Query: 2311 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 2132
            +   RT +YERILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA   GL  + IR WM
Sbjct: 417  N-GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTTNDIRSWM 475

Query: 2131 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1952
            GDF  I+NVAKYAARLGQSF SS ETLSV   E+E I D++   +GT YVFSDGIGKISA
Sbjct: 476  GDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 533

Query: 1951 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1772
            DFARRVA KCG +  TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL
Sbjct: 534  DFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592

Query: 1771 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1592
             WSKYQPC+LNRQ++TLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 593  GWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDAILHDSLKAQEALELMSPGE 652

Query: 1591 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 1412
            N+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR ++RIF+P  R MMGCLDE+  L
Sbjct: 653  NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTL 712

Query: 1411 GYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 1232
             YGQVFVQF+GAG   F E+ +   ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 713  EYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVD 772

Query: 1231 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAPTS 1052
            V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ D+IPPRQV  M+Y PAP+ 
Sbjct: 773  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 832

Query: 1051 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 872
            +LDH+VTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA LFSIAVDF
Sbjct: 833  QLDHNVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 892

Query: 871  PKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 695
            PKTGVPAEIP  LR KEYPDFMDK PDK +Y S R+IGKLFR+VKD AP  +SI  FT++
Sbjct: 893  PKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIAIFTRD 952

Query: 694  VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 515
            VARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 953  VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKASKTF 1012

Query: 514  DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRD 335
            DRRKD EAIS AVR+LR E R+WFK+ N+ DD   KASAWYHVTYHP +WG YN GLKRD
Sbjct: 1013 DRRKDAEAISVAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072

Query: 334  HYISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNLR 212
            H+ISFPWCVYD+LI+IKK+ +R     +++SL  + S +L L+
Sbjct: 1073 HFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSHKLVLK 1115


>ref|XP_006366108.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Solanum tuberosum]
          Length = 1115

 Score = 1551 bits (4015), Expect = 0.0
 Identities = 771/1123 (68%), Positives = 909/1123 (80%), Gaps = 5/1123 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI V GFPDL+ AE VK FLE+ TG GTV ALEVK SK G R +A+VQFV+   A+ 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I+ LAS   RLYFGS YL+AW+   DI+Q  R +V  M+ +TLNFGCQ S +KF+VL   
Sbjct: 61   IINLASK--RLYFGSSYLKAWEMKTDIVQL-RAYVDHMDGITLNFGCQISDDKFAVLGST 117

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
            E VS+KFG G+KK  F L   S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 118  E-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176

Query: 3025 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 2846
            YK+L +S +S+F+ETPDDQW+RTTDF PS IG SS LCLQ   G+ LPNFQ+SF  Y E 
Sbjct: 177  YKRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 236

Query: 2845 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 2672
            ++   L+TG  F  +   ALVP V PP G+ +PY+ILFK+  LVQ GC+PGP L+ NFFR
Sbjct: 237  ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVNFFR 296

Query: 2671 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 2492
            LVDP+R ++  IE ALEKLYY+KECCYDPV WL EQY+ Y   R+ P SP+I+LDDGLVY
Sbjct: 297  LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVY 356

Query: 2491 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 2312
            V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YSTDL PK + G
Sbjct: 357  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416

Query: 2311 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 2132
            +   RT +Y RILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA   GL A  IR WM
Sbjct: 417  N-GIRTNIYVRILSTLQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWM 475

Query: 2131 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1952
            GDF  I+NVAKYAARLGQSF SS ETLSV   E+E I D++   +GT YVFSDGIGKISA
Sbjct: 476  GDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEIIPDVKV--HGTSYVFSDGIGKISA 533

Query: 1951 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1772
            DFARRVA KCG +  TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL
Sbjct: 534  DFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592

Query: 1771 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1592
             WSKYQPCFLNRQ++TLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 593  EWSKYQPCFLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652

Query: 1591 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 1412
            N+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR ++RIF+P  R MMGCLDE+  L
Sbjct: 653  NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMMGCLDESRTL 712

Query: 1411 GYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 1232
             YGQVFVQF+G+G   F E+ +   ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 713  EYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVD 772

Query: 1231 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAPTS 1052
            V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ D+IPPRQV  M+Y PAP+ 
Sbjct: 773  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 832

Query: 1051 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 872
            +LDHDVTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA LFSIAVDF
Sbjct: 833  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELFSIAVDF 892

Query: 871  PKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 695
            PKTGVPAEIP  LR KEYPDFMDK PDK +Y S R+IGKL+R+VKD AP  +S   FT++
Sbjct: 893  PKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRD 952

Query: 694  VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 515
            VARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 953  VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTF 1012

Query: 514  DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRD 335
            DRRKD EAIS AVR+LR E R+WFK+ N+ DD   KASAWYHVTYHP +WG YN GLKRD
Sbjct: 1013 DRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072

Query: 334  HYISFPWCVYDKLIKIKKDN--SRRASDMASLEREFSRRLNLR 212
            H+ISFPWCVYD+LI+IKK+   +R   +++SL  + S +L L+
Sbjct: 1073 HFISFPWCVYDQLIQIKKEKALNRPVLNLSSLRAQLSHKLVLK 1115


>ref|XP_006366109.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Solanum
            tuberosum] gi|565401229|ref|XP_006366110.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Solanum
            tuberosum]
          Length = 1115

 Score = 1546 bits (4004), Expect = 0.0
 Identities = 770/1123 (68%), Positives = 909/1123 (80%), Gaps = 5/1123 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI V GFPDL+ AE VK FLE+ TG GTV ALEVK SK G R +A+VQFV+   A+ 
Sbjct: 1    MGKTIQVYGFPDLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I+ LAS   RLYFGS YL+A +   D++Q    +V  M+ +TLNFGCQ S +KF+VL   
Sbjct: 61   IINLASK--RLYFGSSYLKAREMETDLVQLWE-YVDHMDGITLNFGCQISDDKFAVLGST 117

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
            E VS+KFG G+KK  F L   S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 118  E-VSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 176

Query: 3025 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 2846
            YK+L +S +S+F+ETPDDQW+RTTDF PS IG SS LCLQ   G+ LPNFQ+SF  Y E 
Sbjct: 177  YKRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 236

Query: 2845 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 2672
            ++   L+TG  F  +   ALVP V PP G+ +PY+ILFK+  LVQ GC+PGP L+  FFR
Sbjct: 237  ENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALNVYFFR 296

Query: 2671 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 2492
            LVDP+R ++  IE ALEKLYY+KECCYDPV WL EQY+ Y   R+ P SP+I+LDDGLVY
Sbjct: 297  LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSINLDDGLVY 356

Query: 2491 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 2312
            V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YSTDL PK + G
Sbjct: 357  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTDLLPKASTG 416

Query: 2311 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 2132
            +   RT +YERILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA   GL A  IR WM
Sbjct: 417  N-GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTAIDIRTWM 475

Query: 2131 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1952
            GDF  I+NVAKYAARLGQSF SSTETLSV   E+E I D++   +GT YVFSDGIGKISA
Sbjct: 476  GDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 533

Query: 1951 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1772
            DFARRVA KCG +  TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL
Sbjct: 534  DFARRVASKCGLQH-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 592

Query: 1771 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1592
             WSKYQPC+LNRQ++TLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 593  GWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 652

Query: 1591 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 1412
            N+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR K+RIF+P  R MMGCLDE+  L
Sbjct: 653  NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRLMMGCLDESRTL 712

Query: 1411 GYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 1232
             YGQVFVQF+G+G   F E+ +   ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 713  EYGQVFVQFTGSGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVD 772

Query: 1231 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAPTS 1052
            V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ D+IPPRQV  M+Y PAP+ 
Sbjct: 773  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEYPPAPSI 832

Query: 1051 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 872
            +LDHDVTIEEVEEYFTNYIVNDSLGIIANAH VFAD+E +MA+S+PC +LA L SIAVDF
Sbjct: 833  QLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDMAMSDPCKKLAELCSIAVDF 892

Query: 871  PKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 695
            PKTGVPAEIPP LR KEYPDFMDK PDK +Y S R+IGKL+R+VKD AP  +S   FT++
Sbjct: 893  PKTGVPAEIPPQLRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRD 952

Query: 694  VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 515
            VARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 953  VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTF 1012

Query: 514  DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRD 335
            DRRKD EAIS AVR+LR E R+WFK+ N+ DD   KASAWYHVTYHP +WG YN GLKRD
Sbjct: 1013 DRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQGLKRD 1072

Query: 334  HYISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNLR 212
            H+ISFPWCVYD+LI+IKK+ +R     +++SL  + SR+L L+
Sbjct: 1073 HFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRAQLSRKLVLK 1115


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score = 1519 bits (3934), Expect = 0.0
 Identities = 757/1127 (67%), Positives = 899/1127 (79%), Gaps = 10/1127 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPR-PYARVQFVNISCAE 3389
            M KTI V GFP +V A+ +K FLE+ TG+GT+ ALE+K  + G    +A+VQF +   AE
Sbjct: 1    MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAE 60

Query: 3388 IIMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 3209
             I+ L     ++++G  YL+A +  +DII  PR F+H M+++TL+FGCQ S E+F VLWK
Sbjct: 61   FIITLCKK--KVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWK 118

Query: 3208 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 3029
            A +VSVKFG+G++K +F L H S EY+L+LSYENIWQI L +P GQ  K LLIQL GAP+
Sbjct: 119  AINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQ 178

Query: 3028 IYKKLNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYK 2852
            IY+K    +  YF+E PDDQW+R  DFTPSC IGQS  LCL+LPYG +LPNF+++F +YK
Sbjct: 179  IYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYK 238

Query: 2851 ESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 2672
            E+   F LE+G  ++ NL LVPI+ PP+G  LP++ILFK+  LVQ GCL GP LDT+FFR
Sbjct: 239  ENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFR 298

Query: 2671 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQP--NSPAISLDDGL 2498
            LVDP+RF I +IEHALEKLY++KECCY+PV WL+EQY   RT+ ++P   SPAISLD GL
Sbjct: 299  LVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQY---RTYVKKPVAGSPAISLDTGL 355

Query: 2497 VYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVA 2318
            VYV RVQITP +VYF GPEVNVSNRVLR+Y + +DNFLRVSF+DE  +K++ST +SP+++
Sbjct: 356  VYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMS 415

Query: 2317 AGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRR 2138
               E +RT +Y RILS L+ GI+IG+KKFDFLAFSSSQLRDNS WMFA   GL A  IR 
Sbjct: 416  K--EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRS 473

Query: 2137 WMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKI 1958
            WMGDF  IRNVAKYAARLGQSFSSS ETL V + E+E I DIE  +  T YVFSDGIGKI
Sbjct: 474  WMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKI 533

Query: 1957 SADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLD 1778
            S   A RVAIKCG KS+TPSAFQIRYGGYKGVVAVDP SS KLSLR SM KY+S+NT LD
Sbjct: 534  SPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLD 593

Query: 1777 VLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSP 1598
            VL+WSKYQP FLNRQ+ITLLSTLGVKD+VF+ KQR AV QLD IL DP+ AQEAL+LMSP
Sbjct: 594  VLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSP 653

Query: 1597 GENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETG 1418
            GEN+N+LKEML CGYKPD EPFLSMMLQTFR++KLL+LR K RIFVP  R MMGCLDET 
Sbjct: 654  GENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETR 713

Query: 1417 ILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKA 1238
             L YG+VFVQ SG G    + +S M   + S   N+++EG +VVAKNPCLHPGDVRVL A
Sbjct: 714  TLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWA 773

Query: 1237 IDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAP 1058
            ++V  LHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ DLIPP+Q++PMDY+PAP
Sbjct: 774  VNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAP 833

Query: 1057 TSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAV 878
            T  LDHDV IEEVEEYFTNYIVNDSLGIIANAHTVFADKE + A  +PC ELA+LFSIAV
Sbjct: 834  TKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAV 893

Query: 877  DFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTK 698
            DFPKTGVPAEIP +LRVKEYPDFM+K DK +YES  +IGKLFREVKDIAPH  +IRSFT+
Sbjct: 894  DFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTR 953

Query: 697  EVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKT 518
            +VAR+SYDPDMEV GF DYV +AF YK+EYD KLGNLM+YYGIKTE+EILSG IM+MSK+
Sbjct: 954  DVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKS 1013

Query: 517  FDRRKDVEAISAAVRSLRNEVRSWFKK-----GNESDDPYAKASAWYHVTYHPDFWGSYN 353
            FDRRKD EAI  AV+SLR E R+WF K      +E+DD YAKASAWYHVTYHPD+WG YN
Sbjct: 1014 FDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYN 1073

Query: 352  VGLKRDHYISFPWCVYDKLIKIK-KDNSRRASDMASLEREFSRRLNL 215
             G+ RDH++SFPWCVYDKLI  K K  S R+  ++SLER  S+ L L
Sbjct: 1074 EGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRL 1120


>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score = 1513 bits (3918), Expect = 0.0
 Identities = 746/1132 (65%), Positives = 901/1132 (79%), Gaps = 15/1132 (1%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGP-RPYARVQFVNISCAE 3389
            MGKTI V GFP  V AE VK FLE  TG GTV AL+++  K+G  R YA VQF     A+
Sbjct: 1    MGKTIQVFGFPAGVTAEAVKDFLESKTGGGTVYALKLRTPKKGVGRLYAIVQFTTKEAAD 60

Query: 3388 IIMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 3209
             I+ LA  + +L++G  YL A     D +  PRTF+H ME + L+FGC+ S EKF+VLW+
Sbjct: 61   TIISLACRTEKLWYGRSYLNARRMEQDTVPRPRTFMHTMEHIELHFGCKISNEKFAVLWR 120

Query: 3208 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 3029
              +V+V FG GM+K++F+L H   EYRL+L YENIW+I L+ P  Q  K LLIQL GAPR
Sbjct: 121  GVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPR 180

Query: 3028 IYKK--------LNDSVHSYFRETPDDQWIRTTDFTPS-CIGQSSGLCLQLPYGMRLPNF 2876
            I++K            V ++F+E PDDQW+RTTDFTPS  IGQS+GLC++LPY + LP+F
Sbjct: 181  IFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDF 240

Query: 2875 QDSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGP 2696
            +++F +YKES+D F LETG  ++ +L LVPIV PP G+ LPY ILFK+  LVQ GC+ GP
Sbjct: 241  KENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGP 300

Query: 2695 KLDTNFFRLVDPKR--FDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSP 2522
             LD+NF+RLVDP R    I  IEHAL+KLY++KECCY+P  WL +QY KY T R +P+SP
Sbjct: 301  LLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSP 360

Query: 2521 AISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYS 2342
            AISLDDGLVYVHRVQ+TP+RVYF GPE+NVSNRVLRH+R  +DNFLR+SF+DE+ DK++S
Sbjct: 361  AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 420

Query: 2341 TDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNG 2162
            TDLSP+ ++  +  RT++Y RILSTL+ GI+IG++KF+FLAFSSSQLR++S WMFA   G
Sbjct: 421  TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 480

Query: 2161 LDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYV 1982
            L A  IR WMG+FR+IRNVAKYAARLGQSFSSS ETLSV   E+E I D++     TKYV
Sbjct: 481  LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 540

Query: 1981 FSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKY 1802
            FSDGIGK+SA+FAR+VA KCG K   PSAFQIRYGGYKGVVA DP SS KLSLR SM KY
Sbjct: 541  FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY 600

Query: 1801 QSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQ 1622
            +SE TKLDVL+WSKYQPCFLNRQ+I+LLSTLG+ D +F+ KQREAV QLD IL DPL+AQ
Sbjct: 601  ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 660

Query: 1621 EALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQM 1442
            EAL+LMSPGEN+NILKE+L CGYKPD EPFLSMMLQTFR+SKLL+LR K RIF+P  R M
Sbjct: 661  EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 720

Query: 1441 MGCLDETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHP 1262
            MGCLDET  L YGQVFVQ SGAG    + ES++ + +  +   ++V+G VVVAKNPCLHP
Sbjct: 721  MGCLDETRTLNYGQVFVQISGAGYRQLHGESSL-FSSSRSRQRFIVQGLVVVAKNPCLHP 779

Query: 1261 GDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVS 1082
            GDVRVLKA++V ALHHMVDCVVFP +GMRPHPNECSGSDLDGDIYFVCW+ +LIPP+Q  
Sbjct: 780  GDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWDDELIPPQQDP 839

Query: 1081 PMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLEL 902
            PMDY+PA + +LDHDV IE+VEEYFTNYIVNDSLGIIANAHTVFAD+E + A SEPCL+L
Sbjct: 840  PMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPHKARSEPCLQL 899

Query: 901  ARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHT 722
            A  FSIAVDFPKTGVPAEIPPHL VKEYPDFM+KPDK +YES  +IGKLFR VKDIAPHT
Sbjct: 900  AEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLFRAVKDIAPHT 959

Query: 721  TSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSG 542
            + IR FTKEVARRSYDPDMEVDGF D++D+A  +K  YD KLGNLM+YYGIKTEAEIL+G
Sbjct: 960  SCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYGIKTEAEILTG 1019

Query: 541  GIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKKGNES---DDPYAKASAWYHVTYHPD 371
             IMKMSK+F +R+D EAI  AVR+LR E R+WFK+ + S   DD YAKASAWYHVTYHPD
Sbjct: 1020 SIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEKSGSDTEDDAYAKASAWYHVTYHPD 1079

Query: 370  FWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRRASDMASLEREFSRRLNL 215
            +WG YN G+ RDH++SFPWCVYD+L++IKKD +   +   +LE++F + L +
Sbjct: 1080 YWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQFRQGLRM 1131


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score = 1509 bits (3907), Expect = 0.0
 Identities = 753/1135 (66%), Positives = 898/1135 (79%), Gaps = 18/1135 (1%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRG-PRPYARVQFVNISCAE 3389
            M KT+ VSGFP    A  V+ FLE  TG GTV AL+++  + G  R YA VQF     AE
Sbjct: 1    MSKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGGARKYAIVQFTTTRAAE 60

Query: 3388 IIMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 3209
             I+ LA+   RL++G  YL A     DII  PR+F+H ME VTL+FG QTS+EKFS +W 
Sbjct: 61   QIISLANP--RLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWS 118

Query: 3208 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 3029
              +VSV FG GM+K+HF L HN  EY+L L +ENIWQI L+ P GQT K LLIQL+GAPR
Sbjct: 119  GNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLLIQLYGAPR 178

Query: 3028 IYKK--------LNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNF 2876
            IY++          D + +YFR+ PD+QW+RTTDFTPSC IG SS LCL+LP  ++LPNF
Sbjct: 179  IYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELPNHLQLPNF 238

Query: 2875 QDSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGP 2696
             ++F +YKE++  F LE+G+ F+ N  LVPIV P  G+ LPY ILF+V  LVQ GCL G 
Sbjct: 239  NENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLVQNGCLAGS 298

Query: 2695 KLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAI 2516
             LD  F+RLVDP R  +R IE+ALEKLY++KECCY+P  W NEQY+KY T    P SP +
Sbjct: 299  MLDDIFYRLVDPNRMPVRCIEYALEKLYHLKECCYEPSKWFNEQYKKYLTSGNPPRSPVL 358

Query: 2515 SLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTD 2336
            SLD GLVYV++VQITP +V+F GPEVNVSNRVLR YR+ +DNFLRVSFVDEE +K++STD
Sbjct: 359  SLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVDEELEKIHSTD 418

Query: 2335 LSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLD 2156
            +SP+ ++ +E +RT +Y RILSTL+ GI+IG+KKF+FLAFSSSQLR+NS WMFA   GL 
Sbjct: 419  VSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSCWMFASRLGLT 478

Query: 2155 ADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFS 1976
            A  IR WMG F  IRNVA+YAARLGQSF SSTETLSV   E+E I DIE  R GT+Y+FS
Sbjct: 479  AADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEVSRGGTRYLFS 538

Query: 1975 DGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQS 1796
            DGIGKISA+FAR+VAIKCG K  TPSAFQIRY GYKGVVAVDP SS KLSLR SM KY+S
Sbjct: 539  DGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLSLRRSMFKYES 598

Query: 1795 ENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEA 1616
            ENTKLDVL+ SKYQPCFLNRQ+ITLLSTLGV D+ F+ KQREAV QLD +L DPLRAQEA
Sbjct: 599  ENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAMLTDPLRAQEA 658

Query: 1615 LDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMG 1436
            L+LMSPGEN+NILKEML CGY+PD EPFLSMMLQTFR+SKLL+LR K RIF+P  R MMG
Sbjct: 659  LELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 718

Query: 1435 CLDETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGD 1256
            CLDET  L +GQVFV+FSG+     Y+ S+M  +     C Y+++G+VVVAKNPCLHPGD
Sbjct: 719  CLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQC-YLIKGSVVVAKNPCLHPGD 777

Query: 1255 VRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPM 1076
            +R+LKA+DV ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ +LIP +Q+SPM
Sbjct: 778  LRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPSQQISPM 837

Query: 1075 DYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELAR 896
            DY+P P  +LDHDVTIEEVEEYFTNYIVNDSLG+IANAHT  ADKE+  A+SEPC+ELAR
Sbjct: 838  DYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELAR 897

Query: 895  LFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTS 716
             FSIAVDFPKTGVPAEIP +LR +EYPDFM+KPDK SYES  +IGKLFREVKDIAP T+S
Sbjct: 898  KFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLFREVKDIAPRTSS 957

Query: 715  IRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGI 536
            IRSFT +VAR+ YDPDMEVDGF DY+D+AF YK+ YD KLGNLMEYYGIKTEAE+LSG  
Sbjct: 958  IRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYGIKTEAELLSGSF 1017

Query: 535  MKMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKG----NESDDPYAKASAWYHVTYHPD 371
            MKMSK+F +++D EAI  AVRSL+ E RSWF +KG    +++DD  AKASAWYHVTYH +
Sbjct: 1018 MKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQADDVDAKASAWYHVTYHHN 1077

Query: 370  FWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNS---RRASDMASLEREFSRRLNL 215
            +WG YN G+ RDH++SFPWCVYDKLI+IK+ NS   RR+  + S+ER+FSR L+L
Sbjct: 1078 YWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVERQFSRGLHL 1132


>gb|EPS70289.1| hypothetical protein M569_04468, partial [Genlisea aurea]
          Length = 1095

 Score = 1500 bits (3884), Expect = 0.0
 Identities = 739/1112 (66%), Positives = 890/1112 (80%), Gaps = 1/1112 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MG T+ + GFP  VPA+ VK+ +E+ TGQGTV+AL+V+ SK GPR YA VQF++   AE+
Sbjct: 1    MGLTVMIFGFPSRVPADSVKQLVERYTGQGTVVALKVEASKSGPRAYAVVQFLDARSAEM 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I+    A   LY+GS YL+   S  ++++NP T +  ++QVTL+FGCQ S  KFSVLW  
Sbjct: 61   IVH---AQNSLYYGSSYLKVRYSDKELVRNPATNLQLIDQVTLHFGCQISGNKFSVLWSC 117

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
              V+VKFGT +K + F+L      Y LQLSY++IW+ VLYNP     KLL IQLFGAPRI
Sbjct: 118  SDVTVKFGTQLKTISFILFDGLYNYMLQLSYKSIWKTVLYNPSSGRRKLL-IQLFGAPRI 176

Query: 3025 YKKLNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYKE 2849
             KK+  S +SY+    +DQW+RTTDFT +  IGQSSGLCL+ P+G RLP F+D FV++KE
Sbjct: 177  SKKVEGSPYSYYNVYTEDQWVRTTDFTRAALIGQSSGLCLEFPHGSRLPRFRDDFVYFKE 236

Query: 2848 SQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFRL 2669
             ++ F L+ G  F+ N  L PIV PPRGL LPY I+FK+C LVQ GC+PGP+LD NF+R+
Sbjct: 237  KEEEFHLQEGYSFSQNSVLAPIVGPPRGLSLPYNIVFKICSLVQMGCIPGPELDANFYRM 296

Query: 2668 VDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVYV 2489
            V+P+  DIRYIEHALEK++Y+KECCYDPV WL  QY +Y+T   +P+SP ISL+ GLVYV
Sbjct: 297  VNPQLVDIRYIEHALEKIFYLKECCYDPVKWLESQYRRYQT--SKPSSPTISLEGGLVYV 354

Query: 2488 HRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAGD 2309
             RVQITP+RVYF+GPE+NVSNRVLR Y+D +D+FLRVSFVDE+WDK++S  LS K   G 
Sbjct: 355  RRVQITPSRVYFTGPEINVSNRVLRQYKDRIDDFLRVSFVDEDWDKLFSLTLSSKTEIG- 413

Query: 2308 ENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWMG 2129
               +T++YERILS L+EGI IG+K+FDFLAFSSSQLR+NSLWMFAP+NG+ AD IR+WMG
Sbjct: 414  ---KTRIYERILSVLREGIRIGDKRFDFLAFSSSQLRENSLWMFAPSNGVTADDIRKWMG 470

Query: 2128 DFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISAD 1949
            DFR IRNVAKYAARLGQSF SSTETL+V   E   I DI        Y FSDGIGKISAD
Sbjct: 471  DFRSIRNVAKYAARLGQSFGSSTETLTVQRDEYLLIPDITRQTGDKTYTFSDGIGKISAD 530

Query: 1948 FARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVLS 1769
            FARRVA KC F    PSAFQIRYGG+KGVVAVDP S++KLSLRPSM KY+S+NTKLDVLS
Sbjct: 531  FARRVAAKCRFTHRVPSAFQIRYGGFKGVVAVDPSSNMKLSLRPSMKKYESDNTKLDVLS 590

Query: 1768 WSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGEN 1589
            WSKY PCFLNRQIITLLSTLGV+D VF  KQREAVAQLD+ILVDPLRAQE LDLM+PGEN
Sbjct: 591  WSKYLPCFLNRQIITLLSTLGVEDRVFLKKQREAVAQLDEILVDPLRAQEVLDLMAPGEN 650

Query: 1588 SNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGILG 1409
            S+ILKEMLKCGYKPD EPFLSMML+ FRSSKLLDLR K+RIFVP+ARQ+MGCLDETG L 
Sbjct: 651  SHILKEMLKCGYKPDEEPFLSMMLRAFRSSKLLDLRTKSRIFVPEARQLMGCLDETGTLE 710

Query: 1408 YGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAIDV 1229
            YG+VFVQ SG+ +  F+ +          D N VV G V VAKNPCLHPGD+RV+KA+DV
Sbjct: 711  YGEVFVQISGSRQRQFFFDGPA--VGTVNDYNSVVSGTVFVAKNPCLHPGDIRVVKAVDV 768

Query: 1228 RALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAPTSR 1049
              LHHMVDC+VFP +G RP P+ECSGSDLDGDIYFVCW++DL P +Q  PMDY PAPT+R
Sbjct: 769  PILHHMVDCLVFPQKGHRPLPDECSGSDLDGDIYFVCWDTDLFPLQQDPPMDYDPAPTTR 828

Query: 1048 LDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDFP 869
            LDHDVT++EV++YFT+YIVND+LG+IANAHT FAD+E   A S PCLELA+LFS+AVDFP
Sbjct: 829  LDHDVTMQEVQKYFTDYIVNDTLGVIANAHTAFADRERAKARSPPCLELAKLFSVAVDFP 888

Query: 868  KTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEVA 689
            KTGVPA IP +LRVKE+PDFM+K D+ SY+S  ++GKL+REV+DI P   SI +FT++VA
Sbjct: 889  KTGVPANIPYNLRVKEFPDFMEKSDRVSYQSENVLGKLYREVRDIEP--LSITAFTRDVA 946

Query: 688  RRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFDR 509
             RSYDPD+E+ G+ DYV+EA  YK EYD KLGNLM+YYG+KTEAE+L+GGI+KMSKTFDR
Sbjct: 947  ERSYDPDLEIPGYEDYVEEAHSYKDEYDYKLGNLMDYYGVKTEAEMLTGGILKMSKTFDR 1006

Query: 508  RKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNVGLKRDHY 329
            RKD EA++ AVR+LRNE RSWF+   E DD YAKASAWYHVTYHPD+WG YN GL+RDH+
Sbjct: 1007 RKDAEAVADAVRALRNEARSWFRA--EDDDAYAKASAWYHVTYHPDYWGCYNEGLRRDHF 1064

Query: 328  ISFPWCVYDKLIKIKKDNSRRASDMASLEREF 233
            ISFPWCV+DKLIKIK+D S R+  +AS  R F
Sbjct: 1065 ISFPWCVHDKLIKIKRD-SVRSQGLASRFRRF 1095


>gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
          Length = 1065

 Score = 1498 bits (3878), Expect = 0.0
 Identities = 741/1074 (68%), Positives = 874/1074 (81%), Gaps = 3/1074 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI V GFPDL+PAE VK FLE+ TG GTV AL+VK SK G R +A+VQFV+   A+ 
Sbjct: 1    MGKTIQVYGFPDLLPAEVVKSFLEKHTGYGTVCALDVKQSKGGSRAFAKVQFVDNISADK 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I+ LAS   RLYFGS YL+AW+   DI+Q    +V  M+ +TLNFGCQ S +KF+VL   
Sbjct: 61   IINLASK--RLYFGSSYLKAWEMKTDIVQV--AYVDHMDGITLNFGCQISDDKFAVLGST 116

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
            E VS+KFG G+KK++F L   S +Y+LQLSYENIWQ+VL+ P+GQ A+ LLIQLFGAPRI
Sbjct: 117  E-VSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLIQLFGAPRI 175

Query: 3025 YKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFVFYKES 2846
            YK+L +S +S+F+ETPDDQW+RTTDF PS IG SS LCLQ   G+ LPNFQ+SF  Y E 
Sbjct: 176  YKRLENSCYSFFKETPDDQWVRTTDFAPSWIGLSSSLCLQFRRGVHLPNFQESFFHYAER 235

Query: 2845 QDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 2672
            ++   L+TG  F  +   ALVP V PP G+ +PY+ILFK+  LVQ GC+PGP L+  FFR
Sbjct: 236  ENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPSLNVYFFR 295

Query: 2671 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 2492
            LVDP+R ++  IE ALEKLYY+KECCYDPV WL EQY+ Y   R+ P SP+I+LDDGLVY
Sbjct: 296  LVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPSITLDDGLVY 355

Query: 2491 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 2312
            V RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YST+L PK + G
Sbjct: 356  VRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLPKASTG 415

Query: 2311 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 2132
            +   RT +YERILST+++G +IG+KKF+FLAFSSSQLRDNS+WMFA   GL A+ IR WM
Sbjct: 416  N-GIRTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGLTANDIRTWM 474

Query: 2131 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1952
            GDF  I+NVAKYAARLGQSF SS ETLSV   E+E I D++   +GT YVFSDGIGKISA
Sbjct: 475  GDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKV--HGTSYVFSDGIGKISA 532

Query: 1951 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1772
            DFARRVA KCG +  TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N KLDVL
Sbjct: 533  DFARRVASKCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNNKLDVL 591

Query: 1771 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1592
             WSKYQPC+LNRQ+ITLLSTLGVKD + + KQ+EAV QLD IL D L+AQEAL+LMSPGE
Sbjct: 592  GWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDAILHDSLKAQEALELMSPGE 651

Query: 1591 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 1412
            N+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR K+RIF+P  R MMGCLDE+  L
Sbjct: 652  NTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLDESRTL 711

Query: 1411 GYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 1232
             YGQVFVQF+GAG   F E+ +   ++ ST+CN++++GNVVVAKNPCLHPGD+RVL+A+D
Sbjct: 712  EYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRVLRAVD 771

Query: 1231 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAPTS 1052
            V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ D+IPPRQV PM+Y PAP+ 
Sbjct: 772  VPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQPMEYPPAPSI 831

Query: 1051 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 872
            +LDHDVTIEEVEEYFTNYIVNDSLGII+NAH VFAD+E +MA+S+PC +LA L SIAVDF
Sbjct: 832  QLDHDVTIEEVEEYFTNYIVNDSLGIISNAHVVFADREPDMAMSDPCKKLAELCSIAVDF 891

Query: 871  PKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKE 695
            PKTGVPAEIP   R KEYPDFMDK PDK +Y S R+IGKL+R+VKD AP  +S   FT++
Sbjct: 892  PKTGVPAEIPSQWRPKEYPDFMDKPPDKTTYISERVIGKLYRKVKDKAPQASSTAIFTRD 951

Query: 694  VARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTF 515
            VARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK SKTF
Sbjct: 952  VARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMKTSKTF 1011

Query: 514  DRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYN 353
            DRRKD EAIS AVR+LR E R+WFK+ N+ DD   KASAWYHVTYHP +WG YN
Sbjct: 1012 DRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYN 1065


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score = 1495 bits (3870), Expect = 0.0
 Identities = 747/1103 (67%), Positives = 883/1103 (80%), Gaps = 7/1103 (0%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRG-PRPYARVQFVNISCAE 3389
            MGKTI V G P  V A  +K FLE+ TG+GT+ ALE+K  K G    +A+VQF ++  AE
Sbjct: 1    MGKTIQVYGVPSNVSANEIKEFLEKYTGEGTIEALEIKQPKSGVSMTHAKVQFTSLRLAE 60

Query: 3388 IIMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 3209
            +I+ LA    +L++G  YL+A +  +DII  PRTF+H M+++TL+FG Q S E+F VLWK
Sbjct: 61   LIISLAK---QLWYGGNYLKAREMDLDIIPKPRTFLHSMDRITLHFGYQMSNERFCVLWK 117

Query: 3208 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 3029
            A +VSVKFG G++K +F L H S EY+L+LS ENIWQI L  P GQ  K LLIQL  AP+
Sbjct: 118  AINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLLIQLLDAPQ 177

Query: 3028 IYKKLNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNFQDSFVFYK 2852
            IY+K + S  SYF+ETPDDQW+R  DFTPSC IGQSS LCL+LP+G +LPNF ++F  YK
Sbjct: 178  IYEK-DVSALSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCENFARYK 236

Query: 2851 ESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLDTNFFR 2672
            E+   F LE+G  F+ NL LVPIV PP+G  LP++ILFK+  LVQ GCL GP LDTNFFR
Sbjct: 237  ENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLDTNFFR 296

Query: 2671 LVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLDDGLVY 2492
             VDP+R +I +IEHALEKLYY++ECCY+PV WL+EQY  Y + ++   SPAISLD GLVY
Sbjct: 297  WVDPQRINISFIEHALEKLYYLEECCYEPVRWLHEQYRTYIS-KQVAGSPAISLDTGLVY 355

Query: 2491 VHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSPKVAAG 2312
            V RVQITP +VYF GPEVNVSNRVLR+Y + +DNFLRVSF+DE  +K++ST +SP+++  
Sbjct: 356  VRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVISPRMS-- 413

Query: 2311 DENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADSIRRWM 2132
            +E +RT +Y RILS L+ GI+IG+KKFDFLA SSSQLRDNS WMFA   GL A  IR  M
Sbjct: 414  NEGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTAADIRSRM 473

Query: 2131 GDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGIGKISA 1952
            GDF  IRNVAKYAARLGQSFSSS ETL V + E+E I DIE  R+GT YVFSDGIGKISA
Sbjct: 474  GDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSDGIGKISA 533

Query: 1951 DFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENTKLDVL 1772
            + A RVAIKCG K++TPSAFQIRYGGYKGVVAVDP SS KLSLR SM KY+SENT LDVL
Sbjct: 534  ELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESENTNLDVL 593

Query: 1771 SWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDLMSPGE 1592
            SWSKY+PCFLNRQ+ITLLSTLGVKD+VF+ KQREAV QLD IL DPLRAQEAL+LMSPGE
Sbjct: 594  SWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTILKDPLRAQEALELMSPGE 653

Query: 1591 NSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLDETGIL 1412
            N+NILKEML CGYKPD EPFLSMMLQTFR++KLL+LR K RIFVP  R MMGCLDET  L
Sbjct: 654  NTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTL 713

Query: 1411 GYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRVLKAID 1232
             YG+VFVQ SG G    + +S M Y + S   N+++EG VVVAKNPCLHPGDVR+L A+D
Sbjct: 714  EYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVAKNPCLHPGDVRILSAVD 773

Query: 1231 VRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYSPAPTS 1052
            V ALHHMVDCVVFP +GMRPHP+ECSGSDLDGDIYFVCW+ DLIPPRQ++PMDY+PAPT 
Sbjct: 774  VPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDLIPPRQINPMDYTPAPTK 833

Query: 1051 RLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFSIAVDF 872
             LDHDV IEEVEEYFTNYI ND LGIIANAHTVFADKE + AL  PC ELA+LFSIA++F
Sbjct: 834  VLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKALCPPCKELAKLFSIALEF 893

Query: 871  PKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIRSFTKEV 692
            PKTGVPAEIP HL VKEYPDFM+K +K +YES  +IGKLFREVKD+APH   +RSFT++V
Sbjct: 894  PKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREVKDVAPHNYDVRSFTRDV 953

Query: 691  ARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKMSKTFD 512
            A +SYD DMEVDGF DYV +AF YK++YD KLG+LM+  GI+TE+EILSG IMKMSK+FD
Sbjct: 954  AMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCGIRTESEILSGSIMKMSKSFD 1013

Query: 511  RRKDVEAISAAVRSLRNEVRSWFKKGNE-----SDDPYAKASAWYHVTYHPDFWGSYNVG 347
            +RKD EAI+ AVRSLR E R+WF K        +DD YA ASAWYHVTYHP +WG YN G
Sbjct: 1014 KRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGADDVYAIASAWYHVTYHPYYWGCYNEG 1073

Query: 346  LKRDHYISFPWCVYDKLIKIKKD 278
            +  DH++SFPWCVYDKLI+IK+D
Sbjct: 1074 MYHDHFLSFPWCVYDKLIQIKRD 1096


>gb|EOY01384.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709488|gb|EOY01385.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709489|gb|EOY01386.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao]
          Length = 1109

 Score = 1490 bits (3857), Expect = 0.0
 Identities = 750/1132 (66%), Positives = 886/1132 (78%), Gaps = 15/1132 (1%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI VS FP  V AE VK FLE  TG+ TV AL+++  K G R YA VQF   + AE+
Sbjct: 1    MGKTIQVSRFPSNVHAEEVKTFLELYTGKETVYALKIRQQKNGGRAYAIVQFTKSTDAEL 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I++L +   RLY+GS YL+A +   DI+  PRTF+H ME VTL+FGCQ S EKF VLW+ 
Sbjct: 61   IIRLTNQ--RLYYGSSYLKAREMENDIVPKPRTFLHTMEGVTLHFGCQVSNEKFYVLWEE 118

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
              V+V FG GM+K+ F+L H+ VEYRL L YENIWQI L+ P  QT+K LLIQLFGAPRI
Sbjct: 119  VDVTVNFGMGMRKLQFLLSHHCVEYRLDLFYENIWQIELHRPRNQTSKYLLIQLFGAPRI 178

Query: 3025 YKK--------LNDSVHSYFRETPDDQWIRTTDFTPS-CIGQSSGLCLQLPYGMRLPNFQ 2873
            Y+K          + + +YF + PDDQW+RTTDFT S CIGQSS LCL+LPY ++LPNF+
Sbjct: 179  YEKDVRSSGLVFENPLLNYFMDVPDDQWVRTTDFTQSSCIGQSSVLCLELPYYLQLPNFR 238

Query: 2872 DSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPK 2693
            ++F +YKES+  F LE+G  ++ NL LVPIV P  G++LPY ILFK+  LVQ GC+PGP 
Sbjct: 239  ENFAYYKESEGKFVLESGSSYSRNLNLVPIVGPSLGIDLPYEILFKINLLVQNGCIPGPA 298

Query: 2692 LDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAIS 2513
            LD NF+RLV+P R D  YI+HALEKLYY+KECC++P  WL EQY+ Y   ++ P SP IS
Sbjct: 299  LDANFYRLVNPCRIDKVYIDHALEKLYYLKECCFEPSKWLLEQYKGYIASKKNPGSPVIS 358

Query: 2512 LDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDL 2333
            LDDGLV V RVQITP+RVYF GPE+NVSNRVLRH+ D +DNFLR++FVDEE +K++STDL
Sbjct: 359  LDDGLVNVRRVQITPSRVYFCGPEINVSNRVLRHFHDDIDNFLRITFVDEELEKIHSTDL 418

Query: 2332 SPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDA 2153
              +      N+ T++Y RILSTLK GI+IG+K+F+FLAFSSSQLR+NS WMFA   GL A
Sbjct: 419  LTR------NRITEIYGRILSTLKNGIVIGDKQFEFLAFSSSQLRENSAWMFASREGLTA 472

Query: 2152 DSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSD 1973
              IR WMG+F  IRNVAKYAARLGQSFSSSTETLSV + E+E I D+E  R+G  YVFSD
Sbjct: 473  ADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDVEIKRDGINYVFSD 532

Query: 1972 GIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSE 1793
            GIGKISA FA++VA KC     TPSAFQIR GG+KGVVAVDP SS KLSLR SM KY+SE
Sbjct: 533  GIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKKLSLRGSMSKYESE 592

Query: 1792 NTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEAL 1613
            NTKLDVL+WSKYQPCFLNRQ+ITLLSTLGV D+ F+ KQRE V QL+ IL DPL+AQEAL
Sbjct: 593  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLNAILTDPLKAQEAL 652

Query: 1612 DLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGC 1433
            +LMSPGEN+NILKEML CGY+PD EPFLSMMLQTFR+SKLL+LR K+RIFV   R MMGC
Sbjct: 653  ELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKSRIFVANGRSMMGC 712

Query: 1432 LDETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDV 1253
            LDET  L YGQVFVQ SG+                 ++  ++V+G VVVAKNPCLHPGDV
Sbjct: 713  LDETRTLDYGQVFVQVSGS----------------RSEQRFIVQGKVVVAKNPCLHPGDV 756

Query: 1252 RVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMD 1073
            RVL A++V  LHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ +LIP +Q+ PMD
Sbjct: 757  RVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPELIPSKQIPPMD 816

Query: 1072 YSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARL 893
            YSPAPT  L+H+VTIEEVEEYFTNYIVNDSLGIIANAHTVFAD+E   A+S  C  LA+L
Sbjct: 817  YSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPRKAMSSECKWLAKL 876

Query: 892  FSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSI 713
            FSIAVDFPKTGVPAEIP  LRVKEYPDFM+KPDK +Y+S  +IGKLFREVKD+AP+   I
Sbjct: 877  FSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLFREVKDLAPNECFI 936

Query: 712  RSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIM 533
            RS T+E   R YDPDMEVDG+ DYVD+AF +K+ YD KLGNLMEYYGIKTEAEILSGGIM
Sbjct: 937  RSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYGIKTEAEILSGGIM 996

Query: 532  KMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKGN----ESDDPYAKASAWYHVTYHPDF 368
            KMS++F +++D EAI  AVRSLR E RSWF +KGN    E+DD YAKASAWYHVTYHP +
Sbjct: 997  KMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKGNGLDSEADDLYAKASAWYHVTYHPSY 1056

Query: 367  WGSYNVGLKRDHYISFPWCVYDKLIKIKKD-NSRRASDMASLEREFSRRLNL 215
            WG YN G+ R+H++SFPWCVYDKLI IKK   SRR S ++SLE  F+R L L
Sbjct: 1057 WGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESLFARGLRL 1108


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1473 bits (3813), Expect = 0.0
 Identities = 729/1133 (64%), Positives = 896/1133 (79%), Gaps = 16/1133 (1%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI V GF   V A  VK FLE  TG+ TV AL+++  K+  R +A VQF   S A +
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I++LA+   RLY+G  YL+A +   DI+  PR F+H ME+VT+NFGCQ S EKF VLWKA
Sbjct: 61   IIRLANQ--RLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFGCQVSEEKFYVLWKA 118

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
            ++V++ FGTGM+K+ F+L + S +Y+L+L YENIWQI L  PH QT+K LLIQLFGAPRI
Sbjct: 119  DNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178

Query: 3025 YKK--------LNDSVHSYFRETPDDQWIRTTDFTPS-CIGQSSGLCLQLPYGMRLPNFQ 2873
            Y+K         +D + +YF++ PDDQW+RTTDFT S CIGQSS L L+LP+ ++LPNF+
Sbjct: 179  YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELPHNLQLPNFR 238

Query: 2872 DSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPK 2693
            ++F +YKE++    LE+G  ++ NL+LVPIV P R ++LP+ ILFKV  LVQ GC+PGP 
Sbjct: 239  ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298

Query: 2692 LDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAIS 2513
            LD  F+RLVDP R    YI+HALEKLYY++ECCY+P  WL E+Y+ +   R+   SP IS
Sbjct: 299  LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358

Query: 2512 LDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDL 2333
            LD+GLVYV RVQITP+RVYF GPE+NVSNRVLR + + +DNFLR+SFVDEE +K++ST++
Sbjct: 359  LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418

Query: 2332 SPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDA 2153
              +       +RT +Y+RILSTL+ GI+IGNK+F+FLAFSSSQLR+NS WMFA   GL A
Sbjct: 419  QAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTA 472

Query: 2152 DSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSD 1973
              IR WMG+F  IRNVAKYAARLGQSFSSSTETLSV + E+  I DIE +++G KYVFSD
Sbjct: 473  ADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFSD 532

Query: 1972 GIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSE 1793
            GIGKISA+FA++VA KC  K  TPSAFQIR GG+KGVVA+DP SS KLSLR SM KY+SE
Sbjct: 533  GIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESE 592

Query: 1792 NTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEAL 1613
            NTKLDVL+WSKYQPCFLNRQ+ITLLSTLGV D  F+ KQRE V QL+ +L DPL AQEAL
Sbjct: 593  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNALLTDPLEAQEAL 652

Query: 1612 DLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGC 1433
            +LMSPGEN+NILKEML CGYKPD EPFLSMML+TFR+SKLL+LR KARIFV + R MMGC
Sbjct: 653  ELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGC 712

Query: 1432 LDETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDV 1253
            LDET  L YGQVFVQFSG+                 ++  ++V+G V+VAKNPCLHPGDV
Sbjct: 713  LDETRTLNYGQVFVQFSGS----------------RSERRFIVQGKVIVAKNPCLHPGDV 756

Query: 1252 RVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMD 1073
            RVL+A++V  LHHMVDCVVFP +G RPHPNECSGSDLDGD+YFVCW+ +LIP +Q+ PMD
Sbjct: 757  RVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMD 816

Query: 1072 YSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARL 893
            YSPA T++LDH+VTIEE+EEYFTNYIVNDSLGII+NAHT FAD+E + A+S PCLELA+L
Sbjct: 817  YSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPDKAMSRPCLELAKL 876

Query: 892  FSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSI 713
            FSIAVDFPKTGVPAEIP  LRVKEYPDFM+KPDK SY+S  +IGKLFREVK++AP+  SI
Sbjct: 877  FSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLFREVKNLAPNECSI 936

Query: 712  RSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIM 533
            +  T+E  +R YDPDMEV+GF DY+D+AF +K++YD KLGNLM+YYG+KTEAEIL GGIM
Sbjct: 937  KFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYGVKTEAEILGGGIM 996

Query: 532  KMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKGN----ESDDPYAKASAWYHVTYHPDF 368
            KMS++F +++D EAIS AVRSLR E RSWF +KG+    E DD YAKASAWY+VTYHP +
Sbjct: 997  KMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHPSY 1056

Query: 367  WGSYNVGLKRDHYISFPWCVYDKLIKIKKDNS--RRASDMASLEREFSRRLNL 215
            WG YN G+ RDH++SFPWCVYDKLI+IKK+ +  R A D++SLE  F R L+L
Sbjct: 1057 WGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEHRFQRGLHL 1109


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score = 1469 bits (3802), Expect = 0.0
 Identities = 726/1133 (64%), Positives = 893/1133 (78%), Gaps = 16/1133 (1%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI V GF   V A  VK FLE  TG+ TV AL+++  K+  R +A VQF   S A +
Sbjct: 1    MGKTIQVYGFLSDVSAGEVKTFLEGYTGRETVYALKIRQHKKSGRAFAIVQFTRSSDAGL 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I++LA+   RLY+G  YL+A +   DI+  PR F+H ME+VT+NF C  S EKF VLWKA
Sbjct: 61   IIRLANQ--RLYYGRSYLKAREMETDIVPKPRVFLHTMERVTVNFDCHVSEEKFYVLWKA 118

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
            ++V++ FGTGM+K+ F+L + S +Y+L+L YENIWQI L  PH QT+K LLIQLFGAPRI
Sbjct: 119  DNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLLIQLFGAPRI 178

Query: 3025 YKK--------LNDSVHSYFRETPDDQWIRTTDFTPS-CIGQSSGLCLQLPYGMRLPNFQ 2873
            Y+K         +D + +YF++ PDDQW+RTTDFT S CIGQSS LCL+LP+ ++LPNF+
Sbjct: 179  YEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELPHNLQLPNFR 238

Query: 2872 DSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPK 2693
            ++F +YKE++    LE+G  ++ NL+LVPIV P R ++LP+ ILFKV  LVQ GC+PGP 
Sbjct: 239  ENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLVQNGCIPGPA 298

Query: 2692 LDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAIS 2513
            LD  F+RLVDP R    YI+HALEKLYY++ECCY+P  WL E+Y+ +   R+   SP IS
Sbjct: 299  LDDTFYRLVDPCRMHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSRSRKYQGSPTIS 358

Query: 2512 LDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDL 2333
            LD+GLVYV RVQITP+RVYF GPE+NVSNRVLR + + +DNFLR+SFVDEE +K++ST++
Sbjct: 359  LDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVDEELEKIHSTNV 418

Query: 2332 SPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDA 2153
              +       +RT +Y+RILSTL+ GI+IGNK+F+FLAFSSSQLR+NS WMFA   GL A
Sbjct: 419  QAR------GRRTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSAWMFASRKGLTA 472

Query: 2152 DSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSD 1973
              IR WMG+F  IRNVAKYAARLGQSFSSSTETLSV + E+  I DIE +++G KYVF D
Sbjct: 473  ADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEIMKDGIKYVFPD 532

Query: 1972 GIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSE 1793
            GIGKISA+FA++VA KC  K  TPSAFQIR GG+KGVVA+DP SS KLSLR SM KY+SE
Sbjct: 533  GIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLSLRKSMEKYESE 592

Query: 1792 NTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEAL 1613
            NTKLDVL+WSKYQPCFLNRQ+ITLLSTLGV DY F+ KQRE V QL+ +L DPL AQEAL
Sbjct: 593  NTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNALLTDPLEAQEAL 652

Query: 1612 DLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGC 1433
            +LMSPGEN+NILKEML CGYKPD EPFLSMML+TFR+SKLL+LR KARIFV + R MMGC
Sbjct: 653  ELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARIFVQKGRSMMGC 712

Query: 1432 LDETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDV 1253
            LDET  L YGQVFVQFSG+                 ++  ++V+G V+VAKNPCLHPGDV
Sbjct: 713  LDETRTLNYGQVFVQFSGS----------------RSERRFIVQGKVIVAKNPCLHPGDV 756

Query: 1252 RVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMD 1073
            RVL+A++V  LHHMVDCVVFP +G RPHPNECSGSDLDGD+YFVCW+ +LIP +Q+ PMD
Sbjct: 757  RVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWDPELIPYKQIDPMD 816

Query: 1072 YSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARL 893
            YSPA T++LDH+VTIEE+EEYFTNYIVNDSLGII+NAHT FAD+E   A+S PCLELA+L
Sbjct: 817  YSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPGKAMSRPCLELAKL 876

Query: 892  FSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSI 713
            FSIAVDFPKTGVPAEIP  LRVKE+PDFM+KPDK SY+S  +IGKLFREVK++AP+  SI
Sbjct: 877  FSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLFREVKNLAPNECSI 936

Query: 712  RSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIM 533
            +  T+E  +R YDPDMEV+GF DY+D+AF YK++YD KLGNLM+YYG+KTEAEILSGGIM
Sbjct: 937  KLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYGVKTEAEILSGGIM 996

Query: 532  KMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKGN----ESDDPYAKASAWYHVTYHPDF 368
            KMS++F +++D E+IS AVRSLR E RSWF +KG+    E DD YAKASAWY+VTYH  +
Sbjct: 997  KMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGSELDEEIDDAYAKASAWYYVTYHHSY 1056

Query: 367  WGSYNVGLKRDHYISFPWCVYDKLIKIKKDNS--RRASDMASLEREFSRRLNL 215
            WG YN G+ RDH++SFPWCVYDKLI+IKK+ +  R A D++SLE  F R  +L
Sbjct: 1057 WGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEHRFQRGFHL 1109


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score = 1466 bits (3796), Expect = 0.0
 Identities = 732/1135 (64%), Positives = 891/1135 (78%), Gaps = 18/1135 (1%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRG-PRPYARVQFVNISCAE 3389
            MGKTI +SGFP  V AE VK FLE  TG+GTV A++++P+K G  R YA VQF+ +  AE
Sbjct: 1    MGKTIQLSGFPSHVSAESVKEFLEGHTGRGTVYAIKIRPTKNGGSRSYAIVQFMTVETAE 60

Query: 3388 IIMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 3209
            +I++LA+   RL++G  YL A     DI+  PR  ++ ++ VTL+FGCQ S+EKFS LW+
Sbjct: 61   LIIRLANP--RLWYGRSYLLARVMERDIVPKPRATLYSLQNVTLHFGCQISKEKFSFLWR 118

Query: 3208 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 3029
              +VSV FG G+++++F L +  VEYRLQL YEN+WQI L+ P GQTAK LLIQL GAPR
Sbjct: 119  VGNVSVDFGLGLRRLNFYLTYGPVEYRLQLLYENVWQIELHRPRGQTAKYLLIQLLGAPR 178

Query: 3028 IYKK--------LNDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNF 2876
            +Y+K        L + + +YF++TPDDQW+R TDFT SC IG SS L L+LPYG+ LP+ 
Sbjct: 179  VYEKEVRISFDILENPLFNYFKDTPDDQWVRATDFTESCCIGHSSALYLELPYGVDLPDL 238

Query: 2875 QDSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGP 2696
            +++FV+YKES++ F LE+G  F+ NL LVPIV PP G+ LP+  +FK+  L+Q GCL GP
Sbjct: 239  RENFVYYKESEERFILESGSSFSRNLDLVPIVGPPSGINLPFETVFKINMLLQNGCLSGP 298

Query: 2695 KLDTNFFRLVDPKRF-DIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPA 2519
             LD +F+RLVDP+R  ++  I +ALEKL+ +KEC Y+P AWLNEQY KY T    P  PA
Sbjct: 299  TLDVDFYRLVDPQRIRNVDCINYALEKLFNLKECPYEPAAWLNEQYRKYLTAPRPPKPPA 358

Query: 2518 ISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYST 2339
            I+LD GLVYV RVQ+TP++VYF GPE+NVSNRVLR Y D++D FLRVSFVDEE +K++ST
Sbjct: 359  IALDSGLVYVRRVQVTPSKVYFCGPEINVSNRVLREYIDYIDYFLRVSFVDEELEKLFST 418

Query: 2338 DLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGL 2159
            DLSP+ +  +E++RT +Y RILS L+ GI IG++KF+FLAFSSSQLRDNSLWMFA  +G 
Sbjct: 419  DLSPRTSNANEDRRTGIYRRILSVLRNGIEIGDRKFEFLAFSSSQLRDNSLWMFAAVDGH 478

Query: 2158 DADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVF 1979
             AD+IR+W+GDFR IRNVAKYAARLGQSF SSTETL+V E E E I DIE  R   KYVF
Sbjct: 479  SADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDIEIERGAVKYVF 538

Query: 1978 SDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQ 1799
            SDGIGKIS+ FA+RVA KCG K   PSAFQIRY GYKGVVAVDP SS KLSLR SM KY+
Sbjct: 539  SDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTKLSLRKSMWKYE 598

Query: 1798 SENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQE 1619
            SE  KLDVL++SK Q C+LNRQ+ITLLSTLGV D VF+ KQREAV QL+ IL DPLRA+E
Sbjct: 599  SELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLNAILNDPLRARE 658

Query: 1618 ALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMM 1439
            ALDLMS GE +NILKE+L CGY+P+ EPFLSMMLQ FR+SKL +LR K RI +P  R MM
Sbjct: 659  ALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKTRISIPDGRAMM 718

Query: 1438 GCLDETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPG 1259
            GCLDE   L YG+VFVQFSG     F+E+S M      +  NY+V G VVVAKNPCLHPG
Sbjct: 719  GCLDEMRTLEYGEVFVQFSGITHRPFFEDSFM-LGGTGSGQNYIVVGRVVVAKNPCLHPG 777

Query: 1258 DVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSP 1079
            DVRVL+A++V ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ +LIP +Q  P
Sbjct: 778  DVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDDELIPQKQFEP 837

Query: 1078 MDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELA 899
            MDYSPAPT+RLDHDV IEEV+EYFTNYIVNDSLGIIANAHT FADKE + A+S  C+ELA
Sbjct: 838  MDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPSKAMSPSCIELA 897

Query: 898  RLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTT 719
            RLFSIAVDFPKTGVPA IP  L VKEYPDFM+K +K +YES  +IGKLFREVKDIAP+  
Sbjct: 898  RLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLFREVKDIAPNVG 957

Query: 718  SIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGG 539
            S+  FTKEVA RSYDPDME DGF DY+D+AF YK+ YD KLGNL++YYGIK+EAEI+ G 
Sbjct: 958  SLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYGIKSEAEIIGGS 1017

Query: 538  IMKMSKTFDRRKDVEAISAAVRSLRNEVRSWF-KKGNE----SDDPYAKASAWYHVTYHP 374
            IM+MSK+F +R+D E+I+ AVR+LR E R+WF +KG+     +DD YAKASAWY+VTYH 
Sbjct: 1018 IMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAADDVYAKASAWYYVTYHH 1077

Query: 373  DFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNS--RRASDMASLEREFSRRLNL 215
             +WG YN G+ RDHY+SFPWCVYDKL++IK+  +  RR+  M+SLER F RRL+L
Sbjct: 1078 SYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLERAFDRRLHL 1132


>gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
          Length = 1137

 Score = 1453 bits (3762), Expect = 0.0
 Identities = 735/1128 (65%), Positives = 870/1128 (77%), Gaps = 5/1128 (0%)
 Frame = -1

Query: 3580 LASGQMGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNI 3401
            L  G MGKTI V GFP L+ AE VK FLE+ TG GTV ALEVK SK G R +A+VQFV+ 
Sbjct: 66   LEFGYMGKTIQVYGFPRLLSAEVVKSFLEKHTGYGTVCALEVKQSKGGSRAFAKVQFVDN 125

Query: 3400 SCAEIIMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFS 3221
              A+ I+ LAS   RLYFGS YL+AW+   DI+Q    +V  M+ +TLNFGCQ S +KF+
Sbjct: 126  ISADKIINLASK--RLYFGSSYLKAWELETDIVQL-WAYVDHMDGITLNFGCQISDDKFA 182

Query: 3220 VLWKAESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLF 3041
            VL   E                                   +VL+ P+GQ A+ LLIQLF
Sbjct: 183  VLGSTE-----------------------------------VVLHRPYGQNAQFLLIQLF 207

Query: 3040 GAPRIYKKLNDSVHSYFRETPDDQWIRTTDFTPSCIGQSSGLCLQLPYGMRLPNFQDSFV 2861
            GAPRIYK+L +S +S+F+ETPDDQW+RTTDFTPS IG SS LCLQ   G+ LPNFQ+SF 
Sbjct: 208  GAPRIYKRLENSCYSFFKETPDDQWVRTTDFTPSWIGLSSSLCLQFRRGVHLPNFQESFF 267

Query: 2860 FYKESQDPFRLETGVPF--AANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKLD 2687
             Y E ++   L+TG  F  +   ALVP V PP G+ +PY+ILFK+  LVQ GC+PGP L+
Sbjct: 268  HYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPALN 327

Query: 2686 TNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISLD 2507
              FFRLVDP+R ++  IE ALEKLYY+KECCYDPV WL EQY+ Y   R+ P SP+I+LD
Sbjct: 328  VYFFRLVDPQRRNVACIEQALEKLYYLKECCYDPVRWLTEQYDGYFKGRQPPKSPSITLD 387

Query: 2506 DGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLSP 2327
            DGLVYV RV +TP +VYF GPEVNVSNRVLR+Y + +DNFLRVSFVDEEW+K+YST+L P
Sbjct: 388  DGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYSTELLP 447

Query: 2326 KVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDADS 2147
            K + G+   RT +YERILSTL++G +IG+KKF+FLAFSSSQLRDNS+WMFA   GL A+ 
Sbjct: 448  KASTGN-GIRTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRRGLTAND 506

Query: 2146 IRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDGI 1967
            IR WMGDF  I+NVAKYAAR GQSF SS ETLSV   E+E I D++   +GT YVFSDGI
Sbjct: 507  IRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVKV--HGTSYVFSDGI 564

Query: 1966 GKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSENT 1787
            GKISADFAR+VA  CG +  TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+S+N 
Sbjct: 565  GKISADFARKVASNCGLQY-TPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYESDNN 623

Query: 1786 KLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALDL 1607
            KLDVL WSKYQPC+LNRQ++TLLSTLGVKD V + KQ+EAV QLD IL D L+AQEAL+L
Sbjct: 624  KLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQEALEL 683

Query: 1606 MSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCLD 1427
            MSPGEN+NILK ML CGY PD EPFLSMMLQTFR+SKLLDLR K+RIF+P  R MMGCLD
Sbjct: 684  MSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSRIFIPNGRAMMGCLD 743

Query: 1426 ETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVRV 1247
            E+  L YGQVFVQF+GAG   F E+ +   ++ ST+CN++++GNVVVAKNPCLHPGD+RV
Sbjct: 744  ESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPGDIRV 803

Query: 1246 LKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDYS 1067
            L+A+DV ALHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ D+IPPRQV  M++ 
Sbjct: 804  LRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQDMIPPRQVQAMEFP 863

Query: 1066 PAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLFS 887
            P P+ +LDHDVTIEEVEEYFTNYIVND LGIIANAH VFAD+E +MA+            
Sbjct: 864  PPPSIQLDHDVTIEEVEEYFTNYIVNDGLGIIANAHVVFADREPDMAM------------ 911

Query: 886  IAVDFPKTGVPAEIPPHLRVKEYPDFMDK-PDKNSYESTRIIGKLFREVKDIAPHTTSIR 710
              +DFPKTGVPAEIP  LR KEYPDFMDK PDK +Y S R+IGKLFR+VKD AP  +SI 
Sbjct: 912  --MDFPKTGVPAEIPSQLRPKEYPDFMDKPPDKTTYISERVIGKLFRKVKDKAPQASSIA 969

Query: 709  SFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMK 530
             FT++ ARRSYD D+EVDGF DY+DEAF+YKTEYDNKLGNLM+YYGIKTEAEILSGGIMK
Sbjct: 970  IFTRDDARRSYDTDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGIMK 1029

Query: 529  MSKTFDRRKDVEAISAAVRSLRNEVRSWFKKGNESDDPYAKASAWYHVTYHPDFWGSYNV 350
             SKTFDRRKD EAIS AVR+LR E R+WFK+ N+ DD   KASAWYHVTYHP +WG YN 
Sbjct: 1030 TSKTFDRRKDAEAISIAVRALRKEARTWFKRRNDIDDMLPKASAWYHVTYHPTYWGCYNQ 1089

Query: 349  GLKRDHYISFPWCVYDKLIKIKKDNSRR--ASDMASLEREFSRRLNLR 212
            GLKRDH+ISFPWCVYD+LI+IKK+ +R     +++SL  + SR+L L+
Sbjct: 1090 GLKRDHFISFPWCVYDQLIQIKKEKARNRPVLNLSSLRDQLSRKLVLK 1137


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score = 1422 bits (3680), Expect = 0.0
 Identities = 715/1121 (63%), Positives = 872/1121 (77%), Gaps = 13/1121 (1%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGPRPYARVQFVNISCAEI 3386
            MGKTI + GFP    AE +K FLE+ TG+G+V AL+++P+K G R YA +QF +IS AE 
Sbjct: 1    MGKTIQLHGFPSGQTAENIKEFLEKHTGEGSVFALKLRPAKSGGRFYAIIQFQSISQAEK 60

Query: 3385 IMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWKA 3206
            I+ LA+A  RL++G  YL A  +  DI+  PRTF+H +  + L+ GCQ +++KFSVLW  
Sbjct: 61   IISLANA--RLWYGRSYLNARPAH-DIVPKPRTFLHSLRDLVLHVGCQVAKDKFSVLWGT 117

Query: 3205 ESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPRI 3026
              VSV FG GM+ + F L +    YRLQLSYENIWQI L++  G++AK L+IQL+G PRI
Sbjct: 118  AEVSVDFGFGMRNLQFRLLYRQKVYRLQLSYENIWQIELHHQRGRSAKYLVIQLYGNPRI 177

Query: 3025 YKKLNDSVH-------SYFRETPDDQWIRTTDFTP-SCIGQSSGLCLQLPYGMRLPNFQD 2870
            Y++   S         +YFR+ PDD W+RTTDFTP SCIGQSS LCL L     LP+F++
Sbjct: 178  YQQEVCSSGGNGYEDMNYFRD-PDD-WVRTTDFTPGSCIGQSSSLCLVLTSDGELPDFEE 235

Query: 2869 SFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPGPKL 2690
            +F +YK++   F LE G  F+ N  LVPIV  P G++LPY ILFK+  LVQ GCL GP L
Sbjct: 236  NFAYYKKTDGQFILENGSTFSRNRDLVPIVGSPAGIDLPYDILFKINLLVQQGCLSGPTL 295

Query: 2689 DTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPAISL 2510
            D NF+RLVDP+R     IE AL+KL  +KE CY+P  WLNE+Y KY   ++ P    ISL
Sbjct: 296  DNNFYRLVDPRRISRPCIEFALDKLSNLKESCYEPAVWLNEEYRKYMMSKKPPKPALISL 355

Query: 2509 DDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYSTDLS 2330
            D GLVYV RVQITP++VYFSGPEVNVSNR+LR Y   +DNFLRVSFVDEE +K+YSTDLS
Sbjct: 356  DSGLVYVRRVQITPSKVYFSGPEVNVSNRILRQYSSDIDNFLRVSFVDEEMEKLYSTDLS 415

Query: 2329 PKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNGLDAD 2150
            P+ +     ++T++Y R+LS L++GI++G KKF+FLAFSSSQLR+NSLWMFAPT+   AD
Sbjct: 416  PRTST----RKTRIYNRVLSVLRDGIVVGKKKFEFLAFSSSQLRENSLWMFAPTDEDSAD 471

Query: 2149 SIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYVFSDG 1970
            +IR  MGDFR IRNVAKYAARLGQSF SSTETLSVG  E+E I D+     G KYVFSDG
Sbjct: 472  TIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDVTVNSCGIKYVFSDG 531

Query: 1969 IGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKYQSEN 1790
            IGKISADFA RVA KCG+K+ TPSAFQIRYGGYKGVVAVDP SS+KLSLR SM KY+SEN
Sbjct: 532  IGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRKSMSKYESEN 591

Query: 1789 TKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQEALD 1610
            TKLDVL+ SKYQPCFLNRQ+ITLLSTL V+D+VF  KQR AV QL+ IL DPL+A+EALD
Sbjct: 592  TKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLNAILTDPLKAEEALD 651

Query: 1609 LMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQMMGCL 1430
            LMS GE++N+LKE+L CGYKP+ EPFLSMMLQTFR+SKLL+LR K RIF+P  R MMGCL
Sbjct: 652  LMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKTRIFIPDGRAMMGCL 711

Query: 1429 DETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHPGDVR 1250
            DET  L YGQVFVQFSG  R   +++  ++    S D  +++EG VVVAKNPCLHPGDVR
Sbjct: 712  DETRTLEYGQVFVQFSGKRRRQLFDDICIHS---SLDSCFIIEGKVVVAKNPCLHPGDVR 768

Query: 1249 VLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVSPMDY 1070
            VL+A++V  LHHMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ +LIPP+Q+ PMDY
Sbjct: 769  VLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCWDPELIPPKQIQPMDY 828

Query: 1069 SPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLELARLF 890
            +PAP   +D DVTIEEVEEYF NYIVNDSLGIIANAHTVFAD + + A+S PCL+LA+LF
Sbjct: 829  TPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKLDKAMSHPCLQLAKLF 888

Query: 889  SIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHTTSIR 710
            SIAVDFPKTGVPAEIPP L  KEYPDFM+KPDK +Y S  +IG+LFREVKDIAPH +SI 
Sbjct: 889  SIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQLFREVKDIAPHDSSIA 948

Query: 709  SFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSGGIMK 530
            SFT++VA + YDPDMEVDGF DY+++AF +K  YD KLGN+++YYGIKTEAEILSG IM 
Sbjct: 949  SFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYYGIKTEAEILSGSIMT 1008

Query: 529  MSKTFDRRKDVEAISAAVRSLRNEVRSWFKK-----GNESDDPYAKASAWYHVTYHPDFW 365
            +SK+F +R+D +AI+ AV+SLR E R+WF +      +  DD YAKASAWYHVTYHP+++
Sbjct: 1009 LSKSFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSGDDDVYAKASAWYHVTYHPNYF 1068

Query: 364  GSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRRASDMASLE 242
            G YN G+ R H+ISFPWCV+DKL  IKK+   +A  ++SLE
Sbjct: 1069 GLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQARLISSLE 1109


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score = 1421 bits (3679), Expect = 0.0
 Identities = 727/1136 (63%), Positives = 883/1136 (77%), Gaps = 19/1136 (1%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSKRGP-RPYARVQFVNISCAE 3389
            MGKTIH+SGFP  V A+ VK FLE  TG GTV A++V+P KRG  R YA VQF + + AE
Sbjct: 1    MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60

Query: 3388 IIMKLASASARLYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLWK 3209
            +I+ LA+   RL++GS YL+A  + +DI+  PRT+++ +E++ L FGCQ S EKF VLW+
Sbjct: 61   LIISLANQ--RLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWE 118

Query: 3208 AESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAPR 3029
                 V FG GM+KM+F L + SVEYRL+LSYE IWQI L+ P  Q+ K LLIQL GAPR
Sbjct: 119  GNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPR 178

Query: 3028 IYKKL--------NDSVHSYFRETPDDQWIRTTDFTPSC-IGQSSGLCLQLPYGMRLPNF 2876
            IYKK+        ++ + ++F+E  DDQW+RTTDFT SC IGQSS LCL+LP G +LP F
Sbjct: 179  IYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPF 238

Query: 2875 QDSFVFYKESQDPFRL-ETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPG 2699
            + +F +Y+E +  FRL +    F+    L PIV   R   LPY+ILFK+  LVQ GC+P 
Sbjct: 239  KQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDS-RSHVLPYKILFKINALVQYGCIPW 297

Query: 2698 PKLDTNFFRLVDPK-RFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSP 2522
            P LD +F+RLV+      I ++EHALEKL+++KEC YDP  +L EQY KY   R  PNSP
Sbjct: 298  PLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYS--RHPPNSP 355

Query: 2521 AISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYS 2342
             ISLDDGLVYV RVQITP +V+F GPEVNVSNRVLRH+  ++DNFLRVSFVDEEWDKM S
Sbjct: 356  VISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRS 415

Query: 2341 TDLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTNG 2162
            TDL P++++  E+ +T +Y RILS LK GI+IG+K F FLAFSSSQLRDNSLWMFA    
Sbjct: 416  TDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPD 475

Query: 2161 LDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVRNGTKYV 1982
            +DA  IR WMGDFR I+N AKYAARLGQSF SSTE LSV   E E I DIE  +   KYV
Sbjct: 476  IDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYV 535

Query: 1981 FSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLKY 1802
            FSDGIGKIS+ FA+ VA KCGF+ A PSAFQIRYGGYKGVVAVDP S++KLSLR SM K+
Sbjct: 536  FSDGIGKISSKFAKEVAAKCGFQ-AVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKF 594

Query: 1801 QSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRAQ 1622
            +S+NTKLDVL  SKYQPCFLNRQ+ITL+STLGV+D +F+ KQ EAV QLD IL DPL+AQ
Sbjct: 595  ESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQ 654

Query: 1621 EALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQM 1442
            EAL+LMSPGEN+NILKEMLKCGY+PD EP+LSMMLQTFR+SKLL+LR K+RIF+P  R M
Sbjct: 655  EALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAM 714

Query: 1441 MGCLDETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDCNYVVEGNVVVAKNPCLHP 1262
            MGCLDET  L YGQVFVQ S +GR     ES   ++ +  + + V+EGNV VAKNPCLHP
Sbjct: 715  MGCLDETRTLEYGQVFVQIS-SGRHRNLSES-FAFNRIGREHHLVIEGNVTVAKNPCLHP 772

Query: 1261 GDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPRQVS 1082
            GDVRVLKA+++  L+HMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+++LIP RQ+ 
Sbjct: 773  GDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIP 832

Query: 1081 PMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPCLEL 902
            PMDY+PAP + LD DVT E+++EYF NY+VNDSLGIIANAHT FADKE   A S PCLEL
Sbjct: 833  PMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLEL 892

Query: 901  ARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIAPHT 722
            A+LFS+AVDFPKTGVPA IP HL VKE+PDFM+KPD+ SYES ++IGKLFR VKDIAP  
Sbjct: 893  AKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTL 952

Query: 721  TSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEILSG 542
            + IRSFT++VARR YD DMEV+GF DYV++AF +K+ YD KLGNL++YYGIK+EAE+LSG
Sbjct: 953  SHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSG 1012

Query: 541  GIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFK----KGNESDDPYAKASAWYHVTYHP 374
             IM+MSK+F RR+D EAI+ AVRSLR E R+WF       + SDD +AKASAWY+VTYH 
Sbjct: 1013 SIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHH 1072

Query: 373  DFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSR---RASDMASLEREFSRRLNL 215
             +WG YN G+KRDHY+SFPWCVYDKL++IK++N R   RA+ +AS +R F   LNL
Sbjct: 1073 SYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDR-FGHVLNL 1127


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score = 1413 bits (3658), Expect = 0.0
 Identities = 713/1133 (62%), Positives = 873/1133 (77%), Gaps = 21/1133 (1%)
 Frame = -1

Query: 3565 MGKTIHVSGFPDLVPAERVKRFLEQITGQGTVIALEVKPSK-RGPRPYARVQFVNISCAE 3389
            MGKTI + GFP  V    VK F+EQ TG+GTV A++++  K R PR +A +QF   + A 
Sbjct: 1    MGKTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKLRHGKGRVPRAFAIIQFTTANSAT 60

Query: 3388 IIMKLASASAR-LYFGSFYLRAWDSPIDIIQNPRTFVHEMEQVTLNFGCQTSREKFSVLW 3212
             +M  A+   R L +G+ YL+A +   DI+  PR F+H ++ V L+FGCQ S+ +FSVLW
Sbjct: 61   SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120

Query: 3211 KAESVSVKFGTGMKKMHFVLCHNSVEYRLQLSYENIWQIVLYNPHGQTAKLLLIQLFGAP 3032
            K + V V FG+GM+KMHF+  HN+V+Y+L+LSYENIW+I L+ P  +T + LLIQL GAP
Sbjct: 121  KKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLIQLLGAP 180

Query: 3031 RIYKK--------LNDSVHSYFRETPDDQWIRTTDFTP-SCIGQSSGLCLQLPYGMRLPN 2879
            R+++          +D + ++F++ PD+QWIR  DFTP S IGQSS +CL+LP G +LPN
Sbjct: 181  RVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPNGRQLPN 240

Query: 2878 FQDSFVFYKESQDPFRLETGVPFAANLALVPIVHPPRGLELPYRILFKVCGLVQTGCLPG 2699
            F+++F +Y+ES+  + L+TGVPF+ N  LVPIV PP G+++ Y ILFKV  LVQ  CL G
Sbjct: 241  FRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQHACLAG 300

Query: 2698 PKLDTNFFRLVDPKRFDIRYIEHALEKLYYIKECCYDPVAWLNEQYEKYRTFREQPNSPA 2519
            P LD +F+RLVDP+R    +IE+ALEK+YY KE CY+P  WL +QY+ Y   +  P SPA
Sbjct: 301  PALDGDFYRLVDPRRMPREFIEYALEKIYYSKEFCYEPTKWLTDQYKTYLESKNHPRSPA 360

Query: 2518 ISLDDGLVYVHRVQITPTRVYFSGPEVNVSNRVLRHYRDHVDNFLRVSFVDEEWDKMYST 2339
            ISLD GLVYV RVQITP +VYF GPE+NVSNRVLRH+R+H+DNFLRVSFVDEE DK++ST
Sbjct: 361  ISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDEELDKLFST 420

Query: 2338 DLSPKVAAGDENKRTKLYERILSTLKEGIIIGNKKFDFLAFSSSQLRDNSLWMFAPTN-G 2162
            DLS +     +NK+T++Y RILS LK GI++G+KKF+FLAFSSSQLR+NSLWMFAPT  G
Sbjct: 421  DLSSR----SQNKKTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLWMFAPTETG 476

Query: 2161 LDADSIRRWMGDFRDIRNVAKYAARLGQSFSSSTETLSVGEREVEKILDIEAVR-NGTKY 1985
              A  IR+WMG+F  IRNVAKYAARLGQSF SSTETLSV   EVE I D++ +  +G +Y
Sbjct: 477  CTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKKLTYDGNEY 536

Query: 1984 VFSDGIGKISADFARRVAIKCGFKSATPSAFQIRYGGYKGVVAVDPDSSVKLSLRPSMLK 1805
            VFSDGIGKIS +FA++VA KCG+   TPSAFQIRYGGYKGVVAVDP S  KLSLR SM K
Sbjct: 537  VFSDGIGKISLEFAQKVAKKCGY-DCTPSAFQIRYGGYKGVVAVDPKSCYKLSLRKSMRK 595

Query: 1804 YQSENTKLDVLSWSKYQPCFLNRQIITLLSTLGVKDYVFQTKQREAVAQLDDILVDPLRA 1625
            Y S+NTKLDVL+ SK+QPC+LNRQ+I+LLSTLG+KD VF+ KQRE V QL+ IL D L+A
Sbjct: 596  YDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNTILTDSLKA 655

Query: 1624 QEALDLMSPGENSNILKEMLKCGYKPDGEPFLSMMLQTFRSSKLLDLRVKARIFVPQARQ 1445
            QE LDLMS GE +N+LKEML CGYKP+ EPFLSMMLQTFR+SKLL+LR+K+RIF+P+ R 
Sbjct: 656  QEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSRIFIPKGRA 715

Query: 1444 MMGCLDETGILGYGQVFVQFSGAGRGGFYEESNMNYDNVSTDC--NYVVEGNVVVAKNPC 1271
            MMGCLDET  L YGQVFVQFS           N++ D  S D   NY+V+G VVVAKNPC
Sbjct: 716  MMGCLDETRTLEYGQVFVQFSNN------RLQNLSDDFFSYDLPKNYMVKGKVVVAKNPC 769

Query: 1270 LHPGDVRVLKAIDVRALHHMVDCVVFPSRGMRPHPNECSGSDLDGDIYFVCWESDLIPPR 1091
            LHPGDVRVL+A+DV  L+HMVDCVVFP +G RPHPNECSGSDLDGDIYFVCW+ +LIP R
Sbjct: 770  LHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDHELIPSR 829

Query: 1090 QVSPMDYSPAPTSRLDHDVTIEEVEEYFTNYIVNDSLGIIANAHTVFADKETNMALSEPC 911
             + PMDY+   T  LDHDV IEEVEEYF NYIVNDSLGIIANAHTVFADKE   A+S+ C
Sbjct: 830  PIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQC 889

Query: 910  LELARLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMDKPDKNSYESTRIIGKLFREVKDIA 731
            ++LARLFS AVDFPKTGVPA IPP L VKEYPDFM+KPDK +Y+S  +IGKLFREVK+I+
Sbjct: 890  VKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKLFREVKEIS 949

Query: 730  PHTTSIRSFTKEVARRSYDPDMEVDGFNDYVDEAFEYKTEYDNKLGNLMEYYGIKTEAEI 551
                SI SFTK VAR SYD +MEVDGF DYVD+AF +KT YD KLGNLM+YYGIKTEAEI
Sbjct: 950  TSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEI 1009

Query: 550  LSGGIMKMSKTFDRRKDVEAISAAVRSLRNEVRSWFKKGNESD------DPYAKASAWYH 389
            L G IMKMSK+F++R+D EAI+ AVRSLR E R+WF + +  D      D YAKASAWYH
Sbjct: 1010 LGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGSSDVYAKASAWYH 1069

Query: 388  VTYHPDFWGSYNVGLKRDHYISFPWCVYDKLIKIKKDNSRRASDMASLEREFS 230
            VTYHP +WG YN G+ RDHY+SF WCVY  L++IKK+  + +   +SLE  FS
Sbjct: 1070 VTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKE--KLSIRRSSLEYSFS 1120