BLASTX nr result
ID: Rehmannia26_contig00011188
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00011188
(814 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein A... 193 5e-47
ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein A... 166 7e-39
gb|ABD32279.2| reverse transcriptase, putative [Medicago truncat... 153 6e-35
ref|XP_004305739.1| PREDICTED: uncharacterized protein LOC101306... 149 9e-34
ref|XP_002522932.1| conserved hypothetical protein [Ricinus comm... 144 3e-32
ref|XP_004295654.1| PREDICTED: uncharacterized protein LOC101314... 135 2e-29
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 132 1e-28
gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago ... 127 6e-27
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas... 125 1e-26
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 114 3e-23
ref|XP_006596757.1| PREDICTED: putative ribonuclease H protein A... 112 2e-22
ref|XP_006596869.1| PREDICTED: putative ribonuclease H protein A... 111 3e-22
gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao] 111 3e-22
ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A... 111 3e-22
ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein A... 109 1e-21
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 109 1e-21
ref|XP_002331075.1| predicted protein [Populus trichocarpa] 108 2e-21
ref|XP_004233578.1| PREDICTED: putative ribonuclease H protein A... 108 3e-21
ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein A... 107 7e-21
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 107 7e-21
>ref|XP_004309110.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 872
Score = 193 bits (491), Expect = 5e-47
Identities = 101/274 (36%), Positives = 155/274 (56%), Gaps = 3/274 (1%)
Frame = -2
Query: 813 PRRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLN 634
PR H + IVD++ K S+W G LSMAGR+ L+ SVI+S V++ VY+WPV+L+R++
Sbjct: 265 PRVAHFQAIVDKVRLKLSSWVGSFLSMAGRLQLIKSVIYSMFVYTFQVYEWPVSLLRKVE 324
Query: 633 QAARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASGSL 454
+ RNF+W+GDI K+G+ VSW CAP EGGLGL+ + +N+S ++ W+I S
Sbjct: 325 RWCRNFLWSGDIDKRGIPLVSWTSCCAPIDEGGLGLKKLDVLNSSLLLKRCWEIFTSSFE 384
Query: 453 AASFLRSRYLDRSLEPKASPITSSLWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWLGY 274
F+R+R+ R S SS+W G R + ++ ++ W++G G ISFW DN+LG
Sbjct: 385 GCCFIRNRFSKR-----RSYAPSSIWPGVRKFWGLVQNNTRWLVGTGDKISFWRDNFLGR 439
Query: 273 SIADKLGIPLSFRKRLSQTVSDYLVDGV*HFTSLFIMNCEDIVMDILGMPV---VGGDDS 103
+ + G + S VSDY+ +G L +N + I +P+ +D
Sbjct: 440 PLIEFFGNHGALNDN-SSLVSDYIDNGSWVLPPLLQLNLSAVCNLICQVPISINPSMEDK 498
Query: 102 RVWSRSVHGSVSSRIAYWHLHTRFPVVRWGKWLW 1
+W S G ++++ A+ L PVV WGK LW
Sbjct: 499 LIWQASSTGELTAKQAFLFLQQASPVVPWGKPLW 532
>ref|XP_004296004.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 751
Score = 166 bits (421), Expect = 7e-39
Identities = 99/276 (35%), Positives = 147/276 (53%), Gaps = 5/276 (1%)
Frame = -2
Query: 813 PRRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLN 634
P R HL+ +VD+ + + WKG LSMAGRV LV+ V S ++HS +Y W +L+ L+
Sbjct: 205 PCRKHLQALVDKAKARLAGWKGKLLSMAGRVQLVHDVFQSMLLHSFSIYLWATSLLSHLS 264
Query: 633 QAARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASGSL 454
ARNFIW+GD+ + LVT+SW ++C P E GL LR++ ++ + + +AW L S
Sbjct: 265 ACARNFIWSGDLAIRKLVTISWQQVCTPRNEAGLDLRNLKALYTAGLISLAWQTLLQSSS 324
Query: 453 AASFLRSRY-LDRSLEPKASPITSSLWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWLG 277
SF R+ + R + K TSS+W G + + L S WIIGDG SI FW D WL
Sbjct: 325 WGSFACRRFTIFRHM--KFQYFTSSVWHGLKRVLPLLFEHSRWIIGDGNSILFWSDKWLH 382
Query: 276 YSIADKLGIPLSFRKRLSQTVSDYLVDG----V*HFTSLFIMNCEDIVMDILGMPVVGGD 109
SI +L + S L+ V+D++ D HF++LF +C +++I +P
Sbjct: 383 SSIIQQLNMG-SLSHLLNSRVADFIWDQQWALPSHFSNLF-PDCAKQILEI-PLPNTPES 439
Query: 108 DSRVWSRSVHGSVSSRIAYWHLHTRFPVVRWGKWLW 1
D +W S G S Y + F + W +W
Sbjct: 440 DILIWEHSSSGIFSFSDGYELVRPYFEKLDWASSVW 475
>gb|ABD32279.2| reverse transcriptase, putative [Medicago truncatula]
Length = 480
Score = 153 bits (387), Expect = 6e-35
Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 2/242 (0%)
Frame = -2
Query: 804 MHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQAA 625
++ + IVDRI KF+ WK LS+ GRV LV S+I +V+S +Y WP L+ +L+
Sbjct: 237 IYFQSIVDRIKVKFAIWKCTLLSIMGRVELVKSIIHGMLVYSFQIYMWPRRLLHQLDSWI 296
Query: 624 RNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASGSLAAS 445
+NFIW+GDI + TVSW MC P GGL ++ +N S + +AW + S A+
Sbjct: 297 KNFIWSGDIYTHKVCTVSWKVMCRPWAAGGLDIKPTCLINESLILLLAWQFSTADSQWAA 356
Query: 444 FLRSRYLDRSLEPKASPITSSLWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWLGYSIA 265
+ R+L P SS+W G + ++S++ +S WI+G G +I+ W DNWLG +
Sbjct: 357 LMHHRFLKHG-TPLQHYFLSSMWGGIKEHLSTISSNSIWIVGTGANINLWTDNWLGIRLV 415
Query: 264 DKLGIPLSFRKRLSQTVSDYLVDGV*HFTSLFIMNCEDIVMDI--LGMPVVGGDDSRVWS 91
D L I + + +V+D +V+G + + DI + L +P D+ VW
Sbjct: 416 DSLNISPTLHTKFRASVADVIVNGALSLPAA-ALAVPDIASRVACLVLPTAPLPDALVWL 474
Query: 90 RS 85
S
Sbjct: 475 HS 476
>ref|XP_004305739.1| PREDICTED: uncharacterized protein LOC101306660 [Fragaria vesca
subsp. vesca]
Length = 330
Score = 149 bits (377), Expect = 9e-34
Identities = 77/207 (37%), Positives = 111/207 (53%)
Frame = -2
Query: 813 PRRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLN 634
P+R++ + + DRI SNWKG+SLSMAGRV LVNSV+ S + HS +Y WP T+++++
Sbjct: 130 PKRVYFQVLTDRIRNAMSNWKGNSLSMAGRVTLVNSVVISMLSHSFTIYAWPKTVLQQVR 189
Query: 633 QAARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASGSL 454
RNFIWTG+++ + V+W + CAP EGGLG+R+I ++N +F ++ WD L +
Sbjct: 190 NWIRNFIWTGNVSCRAYYPVAWKKCCAPLKEGGLGVRNIMALNQAFLLKKFWDFLTKSTT 249
Query: 453 AASFLRSRYLDRSLEPKASPITSSLWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWLGY 274
AA ++G+G SI FW NWL
Sbjct: 250 AA----------------------------------------VVGNGHSIDFWHGNWLNG 269
Query: 273 SIADKLGIPLSFRKRLSQTVSDYLVDG 193
SI DKLGI K L V D+++ G
Sbjct: 270 SIIDKLGIAHQLGKSLCGKVFDFILKG 296
>ref|XP_002522932.1| conserved hypothetical protein [Ricinus communis]
gi|223537826|gb|EEF39443.1| conserved hypothetical
protein [Ricinus communis]
Length = 303
Score = 144 bits (364), Expect = 3e-32
Identities = 67/160 (41%), Positives = 102/160 (63%)
Frame = -2
Query: 813 PRRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLN 634
P+ L+ +D I+ KF NWKG +L MAGR+ L+NSVIF++++H+ M+Y+WP +L++ +
Sbjct: 147 PKAKWLKATMDNILVKFDNWKGRTLFMAGRLALINSVIFASLLHTFMMYRWPSSLLKSIE 206
Query: 633 QAARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASGSL 454
+A RNF+WTG ++ K LVTV W C P +EGG+GL+ + +N + R+AW ++ S
Sbjct: 207 KAIRNFLWTGSVSYKKLVTVKWGHCCKPISEGGIGLKRLDVLNRTMLCRIAWKFYSNDSF 266
Query: 453 AASFLRSRYLDRSLEPKASPITSSLWSGFRPYISSLKRDS 334
FLRSRYL S P++S + W R S L+ S
Sbjct: 267 VYRFLRSRYLVASGVPRSSLV----WPSIRELYSKLQATS 302
>ref|XP_004295654.1| PREDICTED: uncharacterized protein LOC101314263 [Fragaria vesca
subsp. vesca]
Length = 839
Score = 135 bits (340), Expect = 2e-29
Identities = 72/201 (35%), Positives = 112/201 (55%), Gaps = 2/201 (0%)
Frame = -2
Query: 603 DITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASGSLAASFLRSRYL 424
+++ + V+W + CAP EGGLG+R+I ++N +F ++ WD L + AA+F +R+L
Sbjct: 423 NVSCRAYYPVAWKKCCAPLKEGGLGVRNIMALNQAFLLKKFWDFLTKSTTAAAFFSARFL 482
Query: 423 DRSLEPKASPITSSLWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWLGYSIADKLGIPL 244
RS +P + SS+W G RP + + +S W++G+G SI FW NWL SI DKLGI
Sbjct: 483 QRSGQPCSYYKRSSIWPGMRPLFTDILYNSKWVVGNGHSIDFWHGNWLNGSIIDKLGIVH 542
Query: 243 SFRKRLSQTVSDYLVDGV*HFTSLFIMNCEDIVMDILG--MPVVGGDDSRVWSRSVHGSV 70
K L VSD++++G ++ + +IL +P DD VW S+ GS+
Sbjct: 543 QLGKSLCGKVSDFILNGSWLCSTNLNAELAALWSEILAIQLPSYDIDDKLVWLDSLEGSL 602
Query: 69 SSRIAYWHLHTRFPVVRWGKW 7
S IAY ++ V W +W
Sbjct: 603 SLSIAYEFKISKQASVPWDRW 623
>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 528
Score = 132 bits (333), Expect = 1e-28
Identities = 58/117 (49%), Positives = 85/117 (72%)
Frame = -2
Query: 813 PRRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLN 634
P+ L+PIVD+I K SNWK LS+AGRV L+ SV S ++H++ +Y WP L++ L
Sbjct: 412 PKARFLQPIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELE 471
Query: 633 QAARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILAS 463
RNFIW+GDITK+ LVTV+W ++C P ++GGLG+RS+S +NA+ +++ WD+L S
Sbjct: 472 TCFRNFIWSGDITKRKLVTVAWKKLCKPQSQGGLGIRSLSQLNAAGNLKLCWDMLHS 528
>gb|ABD32264.2| RNA-directed DNA polymerase , putative [Medicago truncatula]
Length = 161
Score = 127 bits (318), Expect = 6e-27
Identities = 54/114 (47%), Positives = 84/114 (73%)
Frame = -2
Query: 813 PRRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLN 634
P+ +HL+PIVD+II K S WK LS+AGRV +V SVI S + HS+ VY WP +L++ L
Sbjct: 47 PKVIHLQPIVDKIIAKLSTWKASLLSIAGRVQMVKSVIQSMLTHSITVYNWPTSLLKDLE 106
Query: 633 QAARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDI 472
++ +NFIW+GD +K+ LVTV+W ++C P +GGL +RS+ +N++ +++ W+I
Sbjct: 107 KSIKNFIWSGDTSKRKLVTVAWKKLCRPFDQGGLRIRSLIQLNSASNLKLCWNI 160
>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 642
Score = 125 bits (315), Expect = 1e-26
Identities = 50/134 (37%), Positives = 92/134 (68%)
Frame = -2
Query: 813 PRRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLN 634
P+ +H +PI D++ K + WK LS+AGR+ LV SV+ S +VH+M +Y WP+ +++ +
Sbjct: 506 PKGIHFQPIADKVKAKLAKWKASLLSIAGRIQLVKSVVQSMLVHTMSIYSWPIKILKEME 565
Query: 633 QAARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASGSL 454
+ +NFIW+GD+TK+ +VTV+W ++CA EGGLG++S+ +N + +++ W+++ S
Sbjct: 566 KWIKNFIWSGDVTKRKMVTVAWRKICADYEEGGLGVKSLICLNEATNLKICWNLMQSDEQ 625
Query: 453 AASFLRSRYLDRSL 412
A+ +R+ + + L
Sbjct: 626 WANIIRNSWCGQVL 639
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 114 bits (286), Expect = 3e-23
Identities = 75/266 (28%), Positives = 126/266 (47%), Gaps = 13/266 (4%)
Frame = -2
Query: 810 RRMHLEP---IVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRR 640
+RM+ E +++R+ + + WKG SLS+AGR+ L +V+ S VH M PV+ +
Sbjct: 621 KRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDT 680
Query: 639 LNQAARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILA-S 463
L++ +R F+W + KK +SW ++C P EGG+GLRS MN + ++ W +L
Sbjct: 681 LDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDK 740
Query: 462 GSLAASFLRSRYLDRSLEP----KASPITSSLWSGFRPYISS-LKRDSCWIIGDGTSISF 298
SL A +R +Y ++ K P SS W + + + W+ GDG +I F
Sbjct: 741 ESLWARVVRKKYKVGGVQDTSWLKPQPRWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRF 800
Query: 297 WWDNWLGYSIADKLGIPLSFRKRLSQTVSDYLVDGV*HFTSLFIMNCEDIV----MDILG 130
W D WL +LG + + +DY + G + + + V + ++
Sbjct: 801 WLDRWLLQEPLVELGTDMIPEGERIKVAADYWLPGSGWNLEILGLYLPETVKRRLLSVVV 860
Query: 129 MPVVGGDDSRVWSRSVHGSVSSRIAY 52
+G D W + G+ + R AY
Sbjct: 861 QVFLGNGDEISWKGTQDGAFTVRSAY 886
>ref|XP_006596757.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 207
Score = 112 bits (280), Expect = 2e-22
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 8/192 (4%)
Frame = -2
Query: 810 RRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQ 631
R++ EP++ ++ K + W SLSMAGR+ L+N V+ + + M ++ P T+I+RL
Sbjct: 9 RKVVWEPLIRKLEAKLNKWNQRSLSMAGRITLINVVLTALPLFYMSFFRAPTTIIKRLTA 68
Query: 630 AARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDIL-ASGSL 454
R F+W G++ K + V+W ++CAP +GGLG++ I + N + ++ W + L
Sbjct: 69 IQRQFLWGGNLEGKKIAWVAWNQVCAPKEKGGLGVKDIKAFNRALLIKWKWLMFQQQDHL 128
Query: 453 AASFLRSRYLD-RSLEP-KASPITSSLWSGFRPY-----ISSLKRDSCWIIGDGTSISFW 295
+ L S+Y R LE I SS WS R ++++ + W +G G I FW
Sbjct: 129 WSIILTSKYRGWRGLEEGPPKQIFSSWWSDLRSVTQHSSMAAVNKHFRWNLGSGDQILFW 188
Query: 294 WDNWLGYSIADK 259
D+W+G IA K
Sbjct: 189 EDSWVGEGIALK 200
>ref|XP_006596869.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 430
Score = 111 bits (277), Expect = 3e-22
Identities = 62/192 (32%), Positives = 103/192 (53%), Gaps = 8/192 (4%)
Frame = -2
Query: 810 RRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQ 631
R++ EP++ ++ K + W SLSMAGR+ L+N V+ + + M ++ P T+I+RL
Sbjct: 82 RKVVWEPLIKKLEAKLNKWNQRSLSMAGRITLINVVLTTLPLFYMSFFRAPTTIIKRLTA 141
Query: 630 AARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDIL-ASGSL 454
R F+W G++ K + V+W ++CAP +GGLG++ I + N + ++ W + L
Sbjct: 142 IQRQFLWDGNLEGKKIAWVAWNQVCAPKEKGGLGVKDIKAFNRALLIKWKWLMFQQQDHL 201
Query: 453 AASFLRSRYLD-RSLEP-KASPITSSLWSGFRPY-----ISSLKRDSCWIIGDGTSISFW 295
+ L S+Y R LE I SS WS R ++++ + W +G I FW
Sbjct: 202 WSKILTSKYRGWRGLEEGPPKQIFSSWWSDLRSVTQHSSMAAVNKHFRWNLGSDDQILFW 261
Query: 294 WDNWLGYSIADK 259
D+W+G IA K
Sbjct: 262 EDSWVGEGIALK 273
>gb|EOY17513.1| Uncharacterized protein TCM_036737 [Theobroma cacao]
Length = 2215
Score = 111 bits (277), Expect = 3e-22
Identities = 67/260 (25%), Positives = 127/260 (48%), Gaps = 3/260 (1%)
Frame = -2
Query: 804 MHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQAA 625
M +V +I + + W+ +LS GR+ L+ S + S ++ + V K PV ++ R+N+
Sbjct: 1609 MLFNDLVAKIEERITGWENKTLSPGGRITLLRSTLSSLPIYLLQVLKPPVIVLERINRLL 1668
Query: 624 RNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASGSLAAS 445
NF+W G K + SW ++ P EGGL +R++ + +F M++ W + SL
Sbjct: 1669 NNFLWGGSTASKRIHWASWGKIALPIAEGGLDIRNVEDVCEAFSMKLWWRFRTTNSLWTQ 1728
Query: 444 FLRSRYLDRSLEPKASP--ITSSLWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWLGYS 271
F+R++Y L P S W S +++ W IG G + FW D W+G
Sbjct: 1729 FMRAKYCGGQLPTDVQPKLHDSQTWKRMVTISSITEQNIRWRIGHG-ELFFWHDCWMGEE 1787
Query: 270 IADKLGIPLSFRKRLSQTVSDYLVDGV*HFTSLFIMNCEDIVMDILGMPV-VGGDDSRVW 94
+ +F ++Q VSD+ ++ + L + +++V +I+ +P+ +D W
Sbjct: 1788 --PLVNRNQAFASSMAQ-VSDFFLNNSWNVEKLKTVLQQEVVEEIVKIPIDTSSNDKAYW 1844
Query: 93 SRSVHGSVSSRIAYWHLHTR 34
+ + +G S++ A+ + R
Sbjct: 1845 TTTPNGDFSTKSAWQLIRNR 1864
>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 407
Score = 111 bits (277), Expect = 3e-22
Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 8/254 (3%)
Frame = -2
Query: 789 IVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQAARNFIW 610
I D++ + S+WK LSMAGR+ L+ SV + ++M K+PV+L L++ RNF+W
Sbjct: 31 IFDQVQSRLSSWKSKVLSMAGRLTLIQSVSSAIPNYAMQTAKFPVSLCENLDKLNRNFLW 90
Query: 609 TGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDIL-ASGSLAASFLRS 433
KK + V+W +C P G +G++ MN + +++W + L AS
Sbjct: 91 GDTEIKKKVHLVNWDVVCQPKQLGDIGIKKTEDMNQAMLAKISWRMFQCDKGLWASMFAE 150
Query: 432 RYLDRSL----EPKASPITSSLWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWLGYSIA 265
+YL + + SS W G L+ + W +GDG SI FW D W
Sbjct: 151 KYLKNCCLFDDNYEVAVDCSSTWRGIIFGAKLLRSNLKWRLGDGKSIKFWHDYWFPAGPL 210
Query: 264 DKLGIPLSFRKRLSQTVSDYLVDGV*HFTSLFIMNCEDIVMDILGMPV---VGGDDSRVW 94
+P +F + TV D+ ++ L + +IV I+ +P+ V G D+ +W
Sbjct: 211 INFALPSAFINH-AATVCDFWIEDGWDVHKLLDVVPFEIVNKIVNVPIDFGVSGSDTLIW 269
Query: 93 SRSVHGSVSSRIAY 52
+ +G + AY
Sbjct: 270 GATANGKFFVKSAY 283
>ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 360
Score = 109 bits (273), Expect = 1e-21
Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 7/183 (3%)
Frame = -2
Query: 807 RMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQA 628
++ + I+D++ W LS+AGR+ L SVI + +++M K P + +++QA
Sbjct: 10 KLTYQGILDKVNQHLLRWNAIHLSLAGRITLTQSVIQAIPIYAMQTTKIPFGIREKIDQA 69
Query: 627 ARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILAS-GSLA 451
R FIW+G KK + V W +C GGLGL+ ++ MN + M++ W ++AS SL
Sbjct: 70 CRRFIWSGAADKKKISLVKWDTICQLKPSGGLGLKQLNLMNDALLMKIGWVLIASPNSLW 129
Query: 450 ASFLRSRYLDRSLEPKASPIT------SSLWSGFRPYISSLKRDSCWIIGDGTSISFWWD 289
L S+Y L P A P T S +W + + W IG+G + FWWD
Sbjct: 130 VKVLLSKY---GLAPNALPSTLPTKCGSYMWKAVGGIWHEVLKGIKWDIGNGNRVRFWWD 186
Query: 288 NWL 280
NW+
Sbjct: 187 NWV 189
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 109 bits (272), Expect = 1e-21
Identities = 58/179 (32%), Positives = 93/179 (51%), Gaps = 9/179 (5%)
Frame = -2
Query: 789 IVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQAARNFIW 610
I++++ + + WKG LS+AGRV L +V+ S VH+M P + + L++ +R+F+W
Sbjct: 293 ILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLW 352
Query: 609 TGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILAS-GSLAASFLRS 433
+T++ +SW R+C P +EGGLG+R MN + ++ W ++ SL A +R
Sbjct: 353 GSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRC 412
Query: 432 RYLDRSLE----PKASPITSSLWS----GFRPYISSLKRDSCWIIGDGTSISFWWDNWL 280
Y + + K + SS W G R + W+IGDG I FW D WL
Sbjct: 413 NYRVQDVRDGAWTKVRSVCSSTWRSVALGMREVVIP---GLSWVIGDGREILFWMDKWL 468
>ref|XP_002331075.1| predicted protein [Populus trichocarpa]
Length = 517
Score = 108 bits (270), Expect = 2e-21
Identities = 77/279 (27%), Positives = 136/279 (48%), Gaps = 9/279 (3%)
Frame = -2
Query: 810 RRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQ 631
+ ++ + +VDRI K +W +LS AGRV L+NSV+FS V+ ++ P +I+ + Q
Sbjct: 69 KAIYCKGLVDRITSKVRHWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQ 128
Query: 630 AARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDIL--ASGS 457
++F+W+G + V+W ++C P EGGLG++SI N ++ W++ + GS
Sbjct: 129 IMKSFLWSGSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGS 188
Query: 456 LAASFLRSRYL-DRSLEPKASPITSS-LWSGFRPYISSLKRDSCWIIGDGTSISFWWDNW 283
+ ++++RS L R+ +P S W S +IIGDG + S W+DNW
Sbjct: 189 IWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNW 248
Query: 282 LGYS-IADKLGIPLSFRKRLSQT--VSDYLVDGV*HFTSLFIMNCEDIVMDI--LGMPVV 118
+S +AD G + +++ V+ + + + + I+ I P +
Sbjct: 249 HPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKM 308
Query: 117 GGDDSRVWSRSVHGSVSSRIAYWHLHTRFPVVRWGKWLW 1
G D VW S + S ++A+ L +V W +W
Sbjct: 309 GQKDELVWLDSPNHRFSVKVAWEQLRRHRQMVEWHDIVW 347
>ref|XP_004233578.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 955
Score = 108 bits (269), Expect = 3e-21
Identities = 74/283 (26%), Positives = 126/283 (44%), Gaps = 21/283 (7%)
Frame = -2
Query: 810 RRMHLEPIVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQ 631
R ++ IV++II K S W L+ G++ LV V+ S +H + P T ++ +
Sbjct: 333 RIIYFSGIVEKIIRKISGWHAKILNFGGKITLVKHVLQSIPIHLLAAVSPPKTTLKYIKN 392
Query: 630 AARNFIWTGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASGSLA 451
+F W D K SW + PT EGG+G+R++ + +FQ + W+ SL
Sbjct: 393 VIADFFWGMDKDGKKYHWASWETLAYPTNEGGIGVRNLEDVCIAFQYKQWWEFRTKNSLW 452
Query: 450 ASFLRSRYLDRS--LEPKASPITSSLWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWLG 277
+ FL+++Y R+ + K S +W F +++ W I G+S SFWWDNWLG
Sbjct: 453 SKFLKAKYCKRANPVAKKYDTGNSLVWRYFTRNRQAVESYIKWNIHSGSS-SFWWDNWLG 511
Query: 276 YSIADKLGIPLSFRKRLSQTVSDYLVDGV*HFTSLFIMNCEDIVMDILGMPV---VGGDD 106
I +S + VSD+L +G+ + + +V DI+ + +D
Sbjct: 512 NEALANQVINISSLNNIH--VSDFLTNGIWNERYVRQHVPPTMVPDIMQTQFKYNINIED 569
Query: 105 SRVWSRSVHGSVSSRIAY----------------WHLHTRFPV 25
+ +W+ +G + A+ WH H F +
Sbjct: 570 TAIWTPEENGKFTIASAWEVIRKKKSTDIINNSVWHKHIPFKI 612
>ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 491
Score = 107 bits (266), Expect = 7e-21
Identities = 74/275 (26%), Positives = 127/275 (46%), Gaps = 14/275 (5%)
Frame = -2
Query: 789 IVDRIICKFSNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQAARNFIW 610
IVD++ + S W LS+AGR+ L SV+ + V++M + P +I ++NQ + FIW
Sbjct: 7 IVDKVEKRLSGWNASQLSLAGRITLPQSVLQAIPVYTMQTSEIPAGVINKINQICKRFIW 66
Query: 609 TGDITKKGLVTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILAS-GSLAASFLRS 433
+G + + + W ++C P GGLGL+++ MN + M++AW +++ SL L +
Sbjct: 67 SGSNENRKMSLIGWDKVCQPKLCGGLGLKNLGMMNKALMMKLAWGLVSEPTSLWCRVLYT 126
Query: 432 RY-LDRSLEPKASPITSS--LWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWL------ 280
+Y + S P P S LW S + W I +G + FW D W+
Sbjct: 127 KYGVADSDFPLGLPTRSGSHLWKSIGKVWSDTLKGLQWNIVNGRRVRFWLDCWVTKHKPL 186
Query: 279 -GYSIADKLGIPLSFRKRLSQTVSDYLVDGV*HFTSL--FIMNCEDIVMDILGMPVVG-G 112
Y++A P+ ++ V +G + S + NC + + + P+ G G
Sbjct: 187 SSYALA-----PIPVESLMNLIVDFVDANGNWRWDSFEHLLPNCIILRIAAVQPPMEGKG 241
Query: 111 DDSRVWSRSVHGSVSSRIAYWHLHTRFPVVRWGKW 7
DD W+ S G S + AY + + +W
Sbjct: 242 DDKFFWANSQRGDFSVKSAYMAITKNEIGIEHSRW 276
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 107 bits (266), Expect = 7e-21
Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 8/245 (3%)
Frame = -2
Query: 762 SNWKGHSLSMAGRVCLVNSVIFSTVVHSMMVYKWPVTLIRRLNQAARNFIWTGDITKKGL 583
S W +LSMAGR+ LV SV S +++M K P++L +++A NF+W KK +
Sbjct: 328 SGWSSKTLSMAGRLTLVQSVTASIPIYAMQTAKLPLSLCESIDKANINFLWGDSNEKKKI 387
Query: 582 VTVSWVRMCAPTTEGGLGLRSISSMNASFQMRMAWDILASG-SLAASFLRSRYLDRSLEP 406
V+W +C P GGLGL+ + MN + + +W I + L A R +YL
Sbjct: 388 HLVNWESVCKPKHRGGLGLKKTADMNQAMLAKASWRIFQNDHGLWADIYRKKYLQDCCIE 447
Query: 405 KASPIT----SSLWSGFRPYISSLKRDSCWIIGDGTSISFWWDNWLGYSIADKLGIPLSF 238
++ I S+ W G + ++R+ W IGDG I FW
Sbjct: 448 SSNSIAPADCSNTWRGIVHGVELMRRNLKWRIGDGAKIKFW------------------- 488
Query: 237 RKRLSQTVSDYLVDGV*HFTSLFIMNCEDIVMDILGMPV---VGGDDSRVWSRSVHGSVS 67
+ T+ ++ D + + L + + +VM I+ +P V G D +W+ + +G S
Sbjct: 489 ----NATIKEFWCDTSWNISLLKSVLPDHVVMQIISVPSGFGVSGHDKLIWNATANGKFS 544
Query: 66 SRIAY 52
+ Y
Sbjct: 545 VKSTY 549