BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00008151
         (774 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB73912.1| polyprotein [Citrus sinensis]                          406   e-111
gb|AFB73911.1| polyprotein [Citrus sinensis]                          402   e-110
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             394   e-107
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              385   e-105
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              385   e-105
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              383   e-104
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  382   e-104
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              382   e-104
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   252   1e-64
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     250   3e-64
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   249   7e-64
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc...   249   7e-64
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        249   1e-63
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   249   1e-63
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   249   1e-63
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               248   1e-63
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                248   1e-63
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   248   2e-63
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   248   2e-63
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     247   3e-63

>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  406 bits (1043), Expect = e-111
 Identities = 199/258 (77%), Positives = 227/258 (87%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            V GL+KNLLSLGQ+D  GCKT +E+GIMKIVKGA+V+MKAEK+ ANL+MLKGET+Q  +A
Sbjct: 354  VNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKAEKICANLFMLKGETLQEADA 413

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             VA  G  EEST+MWH KLGHMSEQGLKILSE+KL PGL  VSLPFCEHCVTSKQH+LKF
Sbjct: 414  CVASNG--EESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSLPFCEHCVTSKQHRLKF 471

Query: 361  GRSISKSKGILELIHSDVWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFKV 540
             RSI++SK IL+LIHSDVW++P  S+GGA+Y V+FIDDYSRRCWVYPIK+K+DVF VFK 
Sbjct: 472  SRSIARSKCILDLIHSDVWESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKE 531

Query: 541  YKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNRT 720
            YKA +ELESGKKIKCLRTDNGGEYT  EF +FC+QEGI+RQFTVAYTPQQNGVAERMNRT
Sbjct: 532  YKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRT 591

Query: 721  LLERTRAMLRTASLPKTF 774
            L ER RAMLRTA LP +F
Sbjct: 592  LTERIRAMLRTAGLPNSF 609


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  402 bits (1034), Expect = e-110
 Identities = 198/258 (76%), Positives = 226/258 (87%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            V GL+KNLLSLGQ+D  G KT +E+GIMKIVKGA+V+MK EK+ ANL+MLKGET+Q  +A
Sbjct: 354  VNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKVEKIGANLFMLKGETLQEADA 413

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             VA  G  EEST+MWH KLGHMSEQGLKILSE+KLLPGL  VSLPFCEHCVTSKQH+LKF
Sbjct: 414  CVASNG--EESTMMWHLKLGHMSEQGLKILSERKLLPGLKSVSLPFCEHCVTSKQHRLKF 471

Query: 361  GRSISKSKGILELIHSDVWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFKV 540
             RSI++SK IL+LIHSDVW++P  S+GGA+Y V+FIDDYSRRCWVYPIK+K+DVF VFK 
Sbjct: 472  SRSIARSKCILDLIHSDVWESPDISMGGAKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKE 531

Query: 541  YKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNRT 720
            YKA +ELESGKKIKCLRTDNGGEYT  EF +FC+QEGI+RQFTVAYTPQQNGVAERMNRT
Sbjct: 532  YKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQNGVAERMNRT 591

Query: 721  LLERTRAMLRTASLPKTF 774
            L ER RAMLRTA LP +F
Sbjct: 592  LTERIRAMLRTAGLPNSF 609


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  394 bits (1012), Expect = e-107
 Identities = 188/258 (72%), Positives = 223/258 (86%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            VKGL+KNLLS G LD+   +   + G+MKI +GA+VVMK EK+AANLYMLKGET+Q  EA
Sbjct: 344  VKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGETLQEAEA 403

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             VA    + +ST++WH KLGHMS+QG+KIL EQKL+PGLTKVSLP CEHC+TSKQH+LKF
Sbjct: 404  SVAAC--SPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSLPLCEHCITSKQHRLKF 461

Query: 361  GRSISKSKGILELIHSDVWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFKV 540
              S S+ K +LEL+HSDVWQAP+ SLGGA+YFVSFIDDYSRRCWVYPIK+K+DVF+ FK 
Sbjct: 462  STSNSRGKVVLELVHSDVWQAPVPSLGGAKYFVSFIDDYSRRCWVYPIKKKSDVFATFKA 521

Query: 541  YKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNRT 720
            +KA++EL+SGKKIKC RTDNGGEYTS+EF+ FC++EGIKRQFTVAYTPQQNGVAERMNRT
Sbjct: 522  FKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYTPQQNGVAERMNRT 581

Query: 721  LLERTRAMLRTASLPKTF 774
            LLERTRAMLR A L K+F
Sbjct: 582  LLERTRAMLRAAGLEKSF 599


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  385 bits (989), Expect = e-105
 Identities = 187/258 (72%), Positives = 221/258 (85%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            VKGL+KNLLS+GQLDD+GCK   E GI+K+VKG +VVMKAEK+ +NLYML G+T+Q  +A
Sbjct: 353  VKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADA 412

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             VA   S EE+T+MWH +LGHMSE+GLK+L E+ LL GL  V+LPFCEHCV SKQH+LKF
Sbjct: 413  SVAAA-SQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKF 471

Query: 361  GRSISKSKGILELIHSDVWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFKV 540
             R  ++SK IL+LIHSDVW++P  SLGGARYFVSFIDDYSRR WVYPIK+K+DVF VFK 
Sbjct: 472  ARVTTRSKHILDLIHSDVWESPKLSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKA 531

Query: 541  YKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNRT 720
            +KAQIELE+GKKIKCLRTDNGGEY   EF +FC+QEGI RQFTVA+TPQQNGVAERMNRT
Sbjct: 532  FKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRT 591

Query: 721  LLERTRAMLRTASLPKTF 774
            LLERTRAML+TA + K+F
Sbjct: 592  LLERTRAMLKTAEMAKSF 609


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  385 bits (989), Expect = e-105
 Identities = 187/258 (72%), Positives = 221/258 (85%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            VKGL+KNLLS+GQLDD+GCK   E GI+K+VKG +VVMKAEK+ +NLYML G+T+Q  +A
Sbjct: 353  VKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADA 412

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             VA   S EE+T+MWH +LGHMSE+GLK+L E+ LL GL  V+LPFCEHCV SKQH+LKF
Sbjct: 413  SVAAA-SQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKF 471

Query: 361  GRSISKSKGILELIHSDVWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFKV 540
             R  ++SK IL+LIHSDVW++P  SLGGARYFVSFIDDYSRR WVYPIK+K+DVF VFK 
Sbjct: 472  ARVTTRSKHILDLIHSDVWESPELSLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKA 531

Query: 541  YKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNRT 720
            +KAQIELE+GKKIKCLRTDNGGEY   EF +FC+QEGI RQFTVA+TPQQNGVAERMNRT
Sbjct: 532  FKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRT 591

Query: 721  LLERTRAMLRTASLPKTF 774
            LLERTRAML+TA + K+F
Sbjct: 592  LLERTRAMLKTAGMAKSF 609


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  383 bits (983), Expect = e-104
 Identities = 186/258 (72%), Positives = 221/258 (85%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            VKGL+KNLLS+GQLDD+GCK   E GI+K+VKG +VVMKAEK+ +NLYML G+T+Q  +A
Sbjct: 353  VKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADA 412

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             VA   S EE+T+MWH +LGHMSE+GLK+L+E+ LL GL  V+LPFCEHCV SKQH+LKF
Sbjct: 413  SVAA-SSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKF 471

Query: 361  GRSISKSKGILELIHSDVWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFKV 540
             R  ++SK IL+LIHSDVW++P  SLGGARYFVSFIDDYSRR WVYPIK+K+DVF VFK 
Sbjct: 472  ARVTTRSKHILDLIHSDVWESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKA 531

Query: 541  YKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNRT 720
            +KAQIELE+ KKIKCLRTDNGGEY   EF +FC+QEGI RQFTVA+TPQQNGVAERMNRT
Sbjct: 532  FKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRT 591

Query: 721  LLERTRAMLRTASLPKTF 774
            LLERTRAML+TA + K+F
Sbjct: 592  LLERTRAMLKTAGMAKSF 609


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  382 bits (982), Expect = e-104
 Identities = 185/258 (71%), Positives = 226/258 (87%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            VK L KNLLS+GQLDD+G K  I+ GI+K+VKG++VVMKA+K+AANLYML G+T Q  +A
Sbjct: 353  VKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMADA 412

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             VAV GS EE+T+MWH +LGHMSE+GLK+L+E+ L+PGL  VSLPFCEHCV SKQH+LKF
Sbjct: 413  SVAV-GSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKF 471

Query: 361  GRSISKSKGILELIHSDVWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFKV 540
             +S ++SK IL+LIHSDVW++P  S+GGA+YFVSFIDDYSRR WVYPIK+K+ V+SVFK 
Sbjct: 472  AKSTARSKHILDLIHSDVWESPEVSIGGAKYFVSFIDDYSRRLWVYPIKKKSGVYSVFKE 531

Query: 541  YKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNRT 720
            +KAQ+ELE+GK+IKCLRTDNGGEYT  +F +FC+QEGI RQFTVA+TPQQNGVAERMNRT
Sbjct: 532  FKAQVELETGKRIKCLRTDNGGEYTDGDFLAFCKQEGITRQFTVAHTPQQNGVAERMNRT 591

Query: 721  LLERTRAMLRTASLPKTF 774
            LLERTRAML+TA L K+F
Sbjct: 592  LLERTRAMLKTAGLAKSF 609


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  382 bits (981), Expect = e-104
 Identities = 186/258 (72%), Positives = 220/258 (85%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            VKGL+KNLLS+GQLDD+GCK   E GI+K+VKG +VVMKAEK+ +NLYML G+T+Q  +A
Sbjct: 353  VKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADA 412

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             VA   S EE+T+MWH +LGHMSE+GLK+L E+ LL GL  V+LPFCEHCV SKQH+LKF
Sbjct: 413  SVAAA-SQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKF 471

Query: 361  GRSISKSKGILELIHSDVWQAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFKV 540
             R  ++SK IL+LIHSDVW++P  SLGGARYFVSFIDDYSRR WVYPIK+K+DVF VFK 
Sbjct: 472  ARVTTRSKHILDLIHSDVWESPEISLGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKA 531

Query: 541  YKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNRT 720
            +KAQIELE+ KKIKCLRTDNGGEY   EF +FC+QEGI RQFTVA+TPQQNGVAERMNRT
Sbjct: 532  FKAQIELETEKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRT 591

Query: 721  LLERTRAMLRTASLPKTF 774
            LLERTRAML+TA + K+F
Sbjct: 592  LLERTRAMLKTAGMAKSF 609


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  252 bits (643), Expect = 1e-64
 Identities = 120/259 (46%), Positives = 172/259 (66%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            + G+ +NL+SL  LD  G K     G++K+ KG++V M  +  +ANLY+L+G T+ G   
Sbjct: 355  IPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVT 414

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
              AV       T +WH +LGHMSE G+  L ++ LL G T+  + FCEHCV  K  ++KF
Sbjct: 415  AAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKF 474

Query: 361  GRSISKSKGILELIHSDVWQAPLSS-LGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S+ ++KGIL+ +H+D+W     + LGGARY ++ IDDYSR+ W Y +K K D F+ FK
Sbjct: 475  NTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFK 534

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K +IE ++ K++K LRTDNGGE+ SD F+ +C++EGI R  T+ YTPQQNGVAERMNR
Sbjct: 535  EWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNR 594

Query: 718  TLLERTRAMLRTASLPKTF 774
            T++ + R ML  A + K F
Sbjct: 595  TIISKARCMLSNARMNKRF 613


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  250 bits (639), Expect = 3e-64
 Identities = 127/259 (49%), Positives = 175/259 (67%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            +  L+++L+SL  LD  G K    DGI+K+ KG++VVMKA+   ANLY L+G T+ G  A
Sbjct: 271  IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVA 330

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             V+   S  ++T +WH +LGHMSE GL  LS++ LL G +   L FCEHC+  K  ++KF
Sbjct: 331  AVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKF 390

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S   ++GIL+ +HSD+W  A  +S GGARY ++ +DDYSR+ W Y +K K   F VFK
Sbjct: 391  NTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFK 450

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K  +E ++ +K+K LRTDNG E  S  F+S+C+ EGI R +TV +TPQQNGVAERMNR
Sbjct: 451  EWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNR 510

Query: 718  TLLERTRAMLRTASLPKTF 774
            T++ + R ML  ASLPK F
Sbjct: 511  TIISKARCMLSNASLPKQF 529


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  249 bits (636), Expect = 7e-64
 Identities = 119/259 (45%), Positives = 171/259 (66%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            + G+ +NL+SL  LD  G K     G++K+ KG++V M  +  +ANLY+L+G T+ G   
Sbjct: 355  IPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVT 414

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
              AV       T +WH +LGHMSE G+  L ++ LL G T+ ++ FCE CV  K  ++KF
Sbjct: 415  AAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKF 474

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S+ ++KGIL+ +H+D+W  +   SLGGARY ++ IDDYSR+ W Y +K K D F+ FK
Sbjct: 475  NTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFK 534

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K  IE ++ K++K LRTDN GE+ SD F+ +C++EGI R  T+ YTPQQNGVAERMNR
Sbjct: 535  EWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNR 594

Query: 718  TLLERTRAMLRTASLPKTF 774
            T++ + R ML  A + K F
Sbjct: 595  TIISKARCMLSNARMNKRF 613


>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1156

 Score =  249 bits (636), Expect = 7e-64
 Identities = 120/259 (46%), Positives = 171/259 (66%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            + G+ +NL+SL  LD  G K     G++K+ KG++V M  +  + NLY+L+G T+ G   
Sbjct: 295  IPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSTNLYVLRGSTLHGSIT 354

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
              AV       T +WH +LGHMSE G+  L ++ LL G T+ ++ FCEHCV  K  ++KF
Sbjct: 355  AAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKF 414

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S+ +SKGIL+ +H+D+W  +   SLGGA Y ++ IDDYSR+ W Y +K K D F+ FK
Sbjct: 415  NTSVHRSKGILDYVHADLWGPSRKPSLGGACYMLTIIDDYSRKVWPYFLKHKDDTFAAFK 474

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K  IE ++ K++K LRTD+GGE+ SD F+ +C++EGI R  T+ YTPQQNGVAERMNR
Sbjct: 475  EWKVMIERQTEKEVKVLRTDSGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNR 534

Query: 718  TLLERTRAMLRTASLPKTF 774
            T++  TR ML  A + K F
Sbjct: 535  TIISNTRCMLSNARMNKRF 553


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  249 bits (635), Expect = 1e-63
 Identities = 125/259 (48%), Positives = 175/259 (67%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            +  L+++L+SL  LD  G K    DGI+K+ KG++VVMKA   +ANLY L+G T+ G  A
Sbjct: 362  IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVA 421

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             V+   S  ++T +WH +LGHMSE GL  LS++ LL G +   L FCEHC+  K  ++KF
Sbjct: 422  TVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKF 481

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S   ++GIL+ +HSD+W  A  +S GGARY ++ +DDYSR+ W Y +K K   F+VFK
Sbjct: 482  NTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFK 541

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K  +E ++ +K+K LRTDNG E+ S  F+S+C+ EGI R +TV +TPQQNGVAERMNR
Sbjct: 542  EWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNR 601

Query: 718  TLLERTRAMLRTASLPKTF 774
             ++ + R ML  A LPK F
Sbjct: 602  IIISKARCMLSNAGLPKQF 620


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
            gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
            Japonica Group]
          Length = 778

 Score =  249 bits (635), Expect = 1e-63
 Identities = 124/259 (47%), Positives = 175/259 (67%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            +  L+++L+S   LD  G K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A
Sbjct: 328  IPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 387

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             V+   S  ++T +WH +LGHMSE GL  LS++ LL G +   L FCEHC+  K  ++KF
Sbjct: 388  AVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKF 447

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S   ++GIL+ +HSD+W  A  +S GGARY ++ +DDYSR+ W Y +K K   F VFK
Sbjct: 448  NTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFK 507

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K  +E ++ +K+K LRTDNG E+ S  F+S+C+ EGI R +T+ +TPQQNGVAERMNR
Sbjct: 508  EWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTIPHTPQQNGVAERMNR 567

Query: 718  TLLERTRAMLRTASLPKTF 774
            T++ + R ML  A LPK F
Sbjct: 568  TIISKARCMLSNAGLPKQF 586


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|53370655|gb|AAU89150.1| integrase core domain
            containing protein [Oryza sativa Japonica Group]
            gi|108710286|gb|ABF98081.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1322

 Score =  249 bits (635), Expect = 1e-63
 Identities = 120/259 (46%), Positives = 171/259 (66%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            + G+ +NL+SL  LD  G K     G++K+ KG++V M  +  +ANLY+L+G T+ G   
Sbjct: 355  IPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVT 414

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
              AV       T +WH +LGHMSE G+  L ++ LL G T+ ++ FCEHCV  K  ++KF
Sbjct: 415  AAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKF 474

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S+ ++KGIL+ +H+D+W  +   SLGGARY ++ IDDYSR+ W Y +K K D F+ FK
Sbjct: 475  NTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFK 534

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
              K  IE ++ K++K L TDNGGE+ SD F+ +C++EGI R  T+ YTPQQNGVAERMNR
Sbjct: 535  ERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRKEGIVRHHTIPYTPQQNGVAERMNR 594

Query: 718  TLLERTRAMLRTASLPKTF 774
            T++ + R ML  A + K F
Sbjct: 595  TIISKARCMLSNARMNKRF 613


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  248 bits (634), Expect = 1e-63
 Identities = 125/259 (48%), Positives = 176/259 (67%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1   VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
           +  L+++L+SL  LD  G K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A
Sbjct: 179 IPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVA 238

Query: 181 YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
            V+   S  ++T +WH +LGHMSE GL  LS + LL G +   L FCEHC+  K  ++KF
Sbjct: 239 TVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKF 298

Query: 361 GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
             S   ++GIL+ +HSD+W  A  +S GGARY ++ ++DYSR+ W Y +K K   F+VFK
Sbjct: 299 NTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFK 358

Query: 538 VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
            +K  +E ++ +K+K LRTDNG E+ S  F+S+C+ EGI R +TV +TPQQNGVAERMNR
Sbjct: 359 EWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNR 418

Query: 718 TLLERTRAMLRTASLPKTF 774
           T++ + R ML  A LPK F
Sbjct: 419 TIISKARCMLSNAGLPKQF 437


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  248 bits (634), Expect = 1e-63
 Identities = 125/259 (48%), Positives = 176/259 (67%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            +  L+++L+SL  LD  G K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A
Sbjct: 347  IPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVA 406

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             V+   S  ++T +WH +LGHMSE GL  LS + LL G +   L FCEHC+  K  ++KF
Sbjct: 407  TVSDSLSNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKF 466

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S   ++GIL+ +HSD+W  A  +S GGARY ++ ++DYSR+ W Y +K K   F+VFK
Sbjct: 467  NTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFK 526

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K  +E ++ +K+K LRTDNG E+ S  F+S+C+ EGI R +TV +TPQQNGVAERMNR
Sbjct: 527  EWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIMRHYTVPHTPQQNGVAERMNR 586

Query: 718  TLLERTRAMLRTASLPKTF 774
            T++ + R ML  A LPK F
Sbjct: 587  TIISKARCMLSNAGLPKQF 605


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  248 bits (632), Expect = 2e-63
 Identities = 123/259 (47%), Positives = 175/259 (67%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            +  L+++L+SL  LD  G K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A
Sbjct: 569  IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 628

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             V+   S  ++T +WH +LGHM+E GL  LS++ LL G +   L FCEHC+  K  ++KF
Sbjct: 629  AVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKF 688

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S   ++GIL+ +HSD+W  A  +S GG RY ++ +DDYSR+ W Y +K K   F VFK
Sbjct: 689  NTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFK 748

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K  +E ++ +K+K LRTDNG E+ S  F+S+C+ EGI R +TV +TPQQNGVAERMNR
Sbjct: 749  EWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNR 808

Query: 718  TLLERTRAMLRTASLPKTF 774
            T++ + R +L  A LPK F
Sbjct: 809  TIISKARCLLSNAGLPKQF 827


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  248 bits (632), Expect = 2e-63
 Identities = 123/259 (47%), Positives = 175/259 (67%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            +  L+++L+SL  LD  G K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A
Sbjct: 362  IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 421

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             V+   S  ++T +WH +LGHM+E GL  LS++ LL G +   L FCEHC+  K  ++KF
Sbjct: 422  AVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKF 481

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S   ++GIL+ +HSD+W  A  +S GG RY ++ +DDYSR+ W Y +K K   F VFK
Sbjct: 482  NTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFK 541

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K  +E ++ +K+K LRTDNG E+ S  F+S+C+ EGI R +TV +TPQQNGVAERMNR
Sbjct: 542  EWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNR 601

Query: 718  TLLERTRAMLRTASLPKTF 774
            T++ + R +L  A LPK F
Sbjct: 602  TIISKARCLLSNAGLPKQF 620


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  247 bits (631), Expect = 3e-63
 Identities = 124/259 (47%), Positives = 174/259 (67%), Gaps = 1/259 (0%)
 Frame = +1

Query: 1    VKGLRKNLLSLGQLDDVGCKTRIEDGIMKIVKGAIVVMKAEKLAANLYMLKGETMQGGEA 180
            +  L+++L+SL  LD  G K    DGI+K+ KG++VVMKA+  +ANLY L+G T+ G  A
Sbjct: 397  IPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 456

Query: 181  YVAVVGSTEESTIMWHHKLGHMSEQGLKILSEQKLLPGLTKVSLPFCEHCVTSKQHKLKF 360
             V+   S  ++T +WH +LGHMSE GL  LS+++LL G +   L FCEHC+  K  ++KF
Sbjct: 457  AVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKF 516

Query: 361  GRSISKSKGILELIHSDVW-QAPLSSLGGARYFVSFIDDYSRRCWVYPIKRKADVFSVFK 537
              S   ++GIL+ +HSD+W  A  +S GGARY ++ +DDYSR+ W Y +K K   F VFK
Sbjct: 517  NTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFK 576

Query: 538  VYKAQIELESGKKIKCLRTDNGGEYTSDEFESFCQQEGIKRQFTVAYTPQQNGVAERMNR 717
             +K  +E ++ KK+K LRTDNG E+ S  F+S+C+ EGI   +TV +TPQQNGVAERMN 
Sbjct: 577  EWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNM 636

Query: 718  TLLERTRAMLRTASLPKTF 774
             ++ + R ML  A LPK F
Sbjct: 637  AIISKARCMLSNADLPKQF 655