BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00007182
         (1466 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...   106   9e-32
ref|NP_001041883.1| Os01g0123000 [Oryza sativa Japonica Group] g...   107   1e-31
ref|XP_004514187.1| PREDICTED: uncharacterized protein LOC101501...   106   2e-31
emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera]   103   4e-31
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                106   8e-31
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...    98   6e-30
ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488...    99   3e-29
emb|CAN78706.1| hypothetical protein VITISV_028658 [Vitis vinifera]    80   4e-29
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...    99   1e-27
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    94   1e-25
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...    95   2e-25
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   122   5e-25
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc...    99   9e-25
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...    99   9e-25
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    93   1e-24
gb|AAX95626.1| Zinc knuckle, putative [Oryza sativa Japonica Gro...    91   2e-24
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...    99   6e-24
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ...   117   1e-23
emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]   117   1e-23
emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]   116   2e-23

>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
            gi|31430072|gb|AAP52036.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1058

 Score =  106 bits (265), Expect(2) = 9e-32
 Identities = 70/265 (26%), Positives = 115/265 (43%)
 Frame = +3

Query: 651  QSNRAKIMXXXXXXXXXXXGTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGS 830
            Q +RA+++           G  S+ +Y+ K+K + D +ASAG  +D+ + V + L+GL  
Sbjct: 83   QQSRARVINTRLALSNTKKGNRSVAEYVGKMKALADEMASAGKALDDEELVSYILAGLDF 142

Query: 831  EYNPVIVSITSRMEPCSLREAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRR 1010
            +YN V+ ++T R +P S+ E + +L+ +E+RLE+  N        S N  ++    G   
Sbjct: 143  DYNSVVTTVTGRTDPISVNELYGLLVGFESRLELLQNALQA----SANAMSRGGCGGGHG 198

Query: 1011 GATQNYIGRGFYTXXXXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNL 1190
                N  G G                            P CQ+C   GH   KC+ R + 
Sbjct: 199  QGGNNNRGGG-----------------SGRGRGDGKPKPTCQLCGKVGHTVAKCWKRFDP 241

Query: 1191 NFVPGNSRXXXXXXXXXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHV 1370
            +F                              + N A+TS+   + D +WY DS AT+H+
Sbjct: 242  SFT-------------------------REEKSANTAATSSSYGI-DTNWYVDSNATDHI 275

Query: 1371 TFDMGNLNIASDYQGSERVQTASGS 1445
            T +M  L++   Y GSE+V  A G+
Sbjct: 276  TGEMEKLSVKDKYHGSEQVHNAGGT 300



 Score = 58.9 bits (141), Expect(2) = 9e-32
 Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
 Frame = +1

Query: 349 GQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPERITV---DD--NNQKIINP 513
           G  ++ KL  +N+++WR QVLAA+RG  + GFLDG+   PE  TV   DD    +K+ NP
Sbjct: 14  GNTVSEKLTKSNYVLWRAQVLAALRGAQMAGFLDGSTKAPEATTVITKDDGKTTEKVANP 73

Query: 514 EFSAWMRQDQ 543
               W+ Q+Q
Sbjct: 74  ALPQWVAQEQ 83


>ref|NP_001041883.1| Os01g0123000 [Oryza sativa Japonica Group]
            gi|113531414|dbj|BAF03797.1| Os01g0123000 [Oryza sativa
            Japonica Group] gi|215741345|dbj|BAG97840.1| unnamed
            protein product [Oryza sativa Japonica Group]
          Length = 360

 Score =  107 bits (266), Expect(2) = 1e-31
 Identities = 62/245 (25%), Positives = 115/245 (46%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSLR 887
            GT+S+ +Y+ K++ + D LA+AG  ID+ D + + ++GL + ++PV+ ++ +R+EP +++
Sbjct: 144  GTMSVTEYVAKMRAIADELAAAGKPIDQDDLIAYIINGLDANFDPVVEALVARVEPITVQ 203

Query: 888  EAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGFYTXXXXXX 1067
            E ++ LL++EN++ +       + N +      + + G R G  +   GRG         
Sbjct: 204  EMYSHLLNFENKIRLRQAFLTASTNAA---NRNNVTRGGRGGMPRGRGGRG-------GG 253

Query: 1068 XXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXXXXXX 1247
                               P CQ+C+  GH+A  C++R +  +VP               
Sbjct: 254  GRGGNGGRGNNGGGRGDNRPTCQVCNKRGHVASDCWHRFDETYVPDE------------- 300

Query: 1248 XXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQGSERV 1427
                            I   +T     D +WY D+GAT+H+T  +  L     YQG++++
Sbjct: 301  ---------------KIGGAATHAYGIDTNWYVDTGATDHITSQLDKLTTKEKYQGTDQI 345

Query: 1428 QTASG 1442
             TASG
Sbjct: 346  HTASG 350



 Score = 58.5 bits (140), Expect(2) = 1e-31
 Identities = 42/143 (29%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
 Frame = +1

Query: 307 AGNNSAGIQVIQPQGQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDG-TLPQPERITV 483
           A N   GIQV +        KL   N+ +W  QVL A+RG  LEGF+ G T P P  I  
Sbjct: 10  ATNPLVGIQVSE--------KLTKQNYALWSAQVLTALRGARLEGFISGKTTPPPAEIEK 61

Query: 484 DDNNQ-------KIINPEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDI 642
            + ++       KI NP    W   DQ                   G  ++   W+A+  
Sbjct: 62  KEGDKKEGEKTIKIANPAVDEWFATDQQVLGFLFSSLSREILSQVAGATTAAQAWQAISD 121

Query: 643 SFASQIELKLCNINCNFKLSRKG 711
            FAS+    L N+      ++KG
Sbjct: 122 MFASKSRAGLINMRLALTSTQKG 144


>ref|XP_004514187.1| PREDICTED: uncharacterized protein LOC101501674 [Cicer arietinum]
          Length = 933

 Score =  106 bits (265), Expect(2) = 2e-31
 Identities = 72/259 (27%), Positives = 115/259 (44%), Gaps = 12/259 (4%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSLR 887
            G + M +YL K+K + D L  AG  I  +D ++  L+GL SEYNP++V ++ +    +  
Sbjct: 134  GEMKMEEYLVKMKNLADKLKLAGSPISNSDLIIQTLNGLDSEYNPMVVKLSDQTS-LTWV 192

Query: 888  EAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSR-------RGATQNYIGRGFY 1046
            +  A LL++E+RL+  +++ N T N S N+  ++   G++       RG+  N+ G  F 
Sbjct: 193  DLQAQLLTFESRLDQLNSLTNLTLNASANVANKTDYRGNKFNTNNNWRGSNSNWRGSNF- 251

Query: 1047 TXXXXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYR-----TNLNFVPGNS 1211
                                      P CQ+CH +GH A  C+YR     +N N+  GN 
Sbjct: 252  ------------RGWRGDRGRGRMSKPTCQVCHKAGHTAVNCYYRFDKSYSNSNYSAGND 299

Query: 1212 RXXXXXXXXXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNL 1391
            R                          + A  ++  S+QD  WY DSGA+NHVT      
Sbjct: 300  R-----------------------QGAHNAFLASQSSLQDYDWYFDSGASNHVTNQTDKF 336

Query: 1392 NIASDYQGSERVQTASGSE 1448
               +D+ G   +   SG +
Sbjct: 337  EDLTDHHGKNSLIVGSGEK 355



 Score = 58.2 bits (139), Expect(2) = 2e-31
 Identities = 30/119 (25%), Positives = 54/119 (45%)
 Frame = +1

Query: 355 LLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPERITVDDNNQKIINPEFSAWMR 534
           +++VKL  +N+ +W+  V++ V+GY L G++ GT   PE+ T   ++ K  NP F  W  
Sbjct: 16  VVSVKLDRDNYPLWKSLVISIVKGYRLHGYMLGTKECPEKFTASTDSSKNPNPAFEDWQA 75

Query: 535 QDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNINCNFKLSRKG 711
            D                   +  E+SK +W+       +    ++ ++   F   RKG
Sbjct: 76  HDSQLLGWLMNSMTTEMATQLLHCETSKQLWDEAQSLVGAHTRSRVTDLKSEFHNIRKG 134


>emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera]
          Length = 1139

 Score =  103 bits (258), Expect(2) = 4e-31
 Identities = 69/243 (28%), Positives = 110/243 (45%), Gaps = 1/243 (0%)
 Frame = +3

Query: 717  SMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSLREAH 896
            ++ +Y+ KIK   D LA+ G  I E DQV++ L GLGS+YN V+ +I  R +  SL   H
Sbjct: 123  ALENYIMKIKGAADNLAAIGELISEQDQVMNLLGGLGSDYNVVVTAINIRDDKISLEAIH 182

Query: 897  AILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNY-IGRGFYTXXXXXXXX 1073
            ++LL++++ LE   ++   + N++     +        G  Q Y +    YT        
Sbjct: 183  SMLLAFKHPLEQQSSIEQMSANYASFSNNRGGGRKFNGGHGQGYTLNNNNYT--YRGRGR 240

Query: 1074 XXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXXXXXXXX 1253
                             P+CQ+C   GH A  C++R +++F  G +              
Sbjct: 241  GGRNGQGGRQNSSPSEKPQCQLCGKFGHTAQICYHRFDISFQGGQTTTSHSLNNGNQNNI 300

Query: 1254 XXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQGSERVQT 1433
                   S+SPA             D SWY DSG ++H+T ++GNL   S Y G++RV  
Sbjct: 301  PTMVASASNSPA-------------DESWYLDSGTSHHLTQNLGNLTSTSLYTGTDRVTI 347

Query: 1434 ASG 1442
             +G
Sbjct: 348  GNG 350



 Score = 59.7 bits (143), Expect(2) = 4e-31
 Identities = 35/106 (33%), Positives = 49/106 (46%)
 Frame = +1

Query: 322 AGIQVIQPQGQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPERITVDDNNQK 501
           A I   Q     L VKL   N+++WR Q+   V   G E F+DGT   PE+    D + +
Sbjct: 24  ASIPSYQMLNHTLPVKLDRTNYILWRSQIDNVVFANGFEDFIDGTSICPEK----DLSPR 79

Query: 502 IINPEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALD 639
           +INP F AW RQD+                  +G  +S + W AL+
Sbjct: 80  VINPAFVAWRRQDRTILSWIYLSLTPGIMAQIIGHNTSHSAWNALE 125


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score =  106 bits (264), Expect(2) = 8e-31
 Identities = 67/251 (26%), Positives = 118/251 (47%), Gaps = 5/251 (1%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSLR 887
            G  S+ +Y+ K+K + D +A+AG  +D+ + + + L+GL  +++ V+ +I  R+EP ++ 
Sbjct: 276  GNSSISEYIGKMKTLADEVAAAGKPLDDEELIAYILNGLDEDFDSVVSTIVGRVEPVTVA 335

Query: 888  EAHAILLSYENRL-----EVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGFYTX 1052
            E ++ LLS+ENRL     + + N+AN              +PG  RGAT+   GRG    
Sbjct: 336  EVYSQLLSFENRLAMRQAQATANMANRGGRGGGGSRGGGANPGRGRGATR---GRG---- 388

Query: 1053 XXXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXX 1232
                                    P CQ+C+  GH+A  C++R + +FVP +        
Sbjct: 389  -----AAPGRGRGNNQQQRSYDNRPLCQVCYKRGHVAADCWHRFDEDFVPDD-------- 435

Query: 1233 XXXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQ 1412
                                 + + +     +D +WY D+GAT+H+T ++  L     Y+
Sbjct: 436  --------------------KLVAAAIHTHARDSNWYVDTGATDHITSELEKLTARDVYK 475

Query: 1413 GSERVQTASGS 1445
            G +++ TASGS
Sbjct: 476  GHDQIHTASGS 486



 Score = 56.2 bits (134), Expect(2) = 8e-31
 Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
 Frame = +1

Query: 349 GQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPE---RITVDDNNQKIINPEF 519
           G  +T KL   N  +W  QVL A+RG  LEG ++G  P P      TVD    K  NP +
Sbjct: 153 GVQVTEKLSKANHGLWVAQVLTAIRGARLEGHINGKNPAPPAEITKTVDGKEVKTSNPNY 212

Query: 520 SAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNINCNFKL 699
             W   DQ                    ++++   W+ LD  F S+   +  N+      
Sbjct: 213 DEWFAADQQILGFLFSSLTRETLLQVAAVKTAAEAWKTLDDMFTSRTRARSLNVRLALTT 272

Query: 700 SRKG 711
            +KG
Sbjct: 273 LQKG 276


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1180

 Score = 97.8 bits (242), Expect(2) = 6e-30
 Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 4/256 (1%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSLR 887
            G LS+ +Y+ KI+ + D LA++   +DE D +   + GL  ++ P+I S+ S+ E  SL 
Sbjct: 138  GDLSVAEYVGKIRALADELATSDKLVDEEDLISFIIVGLDEDFEPIISSLVSKSEHVSLG 197

Query: 888  EAHAILLSYENRL----EVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGFYTXX 1055
            EA++ LLS+E R+    E S N+A+           Q    G++    Q   GRG     
Sbjct: 198  EAYSQLLSFEQRMKLRQEHSANLAHR--GRGRGQQQQGRGCGNQGNQQQQQCGRG----G 251

Query: 1056 XXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXX 1235
                                   P+CQ+C+  GH    C+YR + +FVP           
Sbjct: 252  KNCGRGRGNTSYQRQGGNNTDNRPKCQLCYKRGHTVIDCWYRYDEDFVPDE--------- 302

Query: 1236 XXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQG 1415
                                 A T+    V D +WY D+GAT+H+T ++  L I   Y+G
Sbjct: 303  -------------------KYAGTAASYGV-DSNWYVDTGATDHITGELEKLTIRDKYKG 342

Query: 1416 SERVQTASGSEYCNRD 1463
             ++VQ A+G++   ++
Sbjct: 343  QDQVQAANGADQAMKE 358



 Score = 61.6 bits (148), Expect(2) = 6e-30
 Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
 Frame = +1

Query: 349 GQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPERITV---DDNNQKIINPEF 519
           G  +T KL   N+L+W+ QVLA +RG  L+G+L G +  P   T+    D + ++ NP F
Sbjct: 15  GITVTEKLGKGNYLIWKVQVLAVIRGARLDGYLTGAIRAPSPTTIIKKSDKDVEVPNPAF 74

Query: 520 SAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNINCNFKL 699
             W+  DQ                      S+ A+W  ++  F+S    +  N       
Sbjct: 75  DEWIANDQQVLGYLLTTMSRDVLSKVATCGSAAALWSVVEGMFSSATRARSINTKITLTN 134

Query: 700 SRKG 711
           ++KG
Sbjct: 135 TKKG 138


>ref|XP_004513130.1| PREDICTED: uncharacterized protein LOC101488260 [Cicer arietinum]
          Length = 752

 Score = 99.0 bits (245), Expect(2) = 3e-29
 Identities = 66/237 (27%), Positives = 106/237 (44%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSLR 887
            G + M  YL K+K + D L  AG  I  +D ++  L+GL ++YNPV+V ++ ++   +  
Sbjct: 186  GQMKMDQYLLKMKNLSDKLKLAGSPISSSDLIIQTLNGLDADYNPVVVKLSDQIN-LNWV 244

Query: 888  EAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGFYTXXXXXX 1067
            +  A LL++ENR+E  +N +N + N S NL +Q+    ++ G   N+ G  F        
Sbjct: 245  DLQAQLLAFENRMEQLNNFSNLSMNASANLASQTHFRSNKSGTRGNWRGSNF-------- 296

Query: 1068 XXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXXXXXX 1247
                               P CQ+C+  GH   +CFYR + ++   N             
Sbjct: 297  ---------RGGRGRGRSKPTCQVCNKIGHTTVQCFYRFDKSYTCSN------------- 334

Query: 1248 XXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQGS 1418
                     ++    + A  ++P   QD  WY DSGA NHVT     L   S+  G+
Sbjct: 335  -----HYAENNKQENHSAFIASPYHGQDYEWYFDSGANNHVTHQNEKLQDLSESNGN 386



 Score = 58.2 bits (139), Expect(2) = 3e-29
 Identities = 34/149 (22%), Positives = 65/149 (43%)
 Frame = +1

Query: 265 SFYFFSFLMDPRMNAGNNSAGIQVIQPQGQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGF 444
           S +F  F ++   +  +++A           ++VKL  +N+L+W+  VL  +RG  L+G+
Sbjct: 38  SHFFIPFSLEGSRSNKSSAANTNHKNDLPTTVSVKLDRDNYLLWKSLVLPLIRGCKLDGY 97

Query: 445 LDGTLPQPERITVDDNNQKIINPEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAV 624
           + GT   PE+    ++  K  NP++  W+  DQ                  +  E+SK +
Sbjct: 98  IIGTKECPEQFISTNDTTKKNNPDYEEWIAHDQALLGWLRNSVAIDIATQLLHCETSKEL 157

Query: 625 WEALDISFASQIELKLCNINCNFKLSRKG 711
           W        +  + +   +   F  +RKG
Sbjct: 158 WNEAQSLTGAHTKSRTIYLKSEFHNTRKG 186


>emb|CAN78706.1| hypothetical protein VITISV_028658 [Vitis vinifera]
          Length = 780

 Score = 80.1 bits (196), Expect(2) = 4e-29
 Identities = 50/130 (38%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
 Frame = +3

Query: 663  AKIMXXXXXXXXXXXGTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNP 842
            AK+M             L+MRDYL K+K  CDLLA+AGH I +TD +L  + GLG EY  
Sbjct: 145  AKVMFYKSQMHMLKKDGLTMRDYLTKMKNYCDLLATAGHKISDTDHILAIMQGLGDEYES 204

Query: 843  VIVSITSRMEPCSLREAHAILLSYENRL--EVSDNVANTTDNFSVNLTTQSTSPGSRRGA 1016
            VI  I+S+    SL+   + L+++E R+  ++S N      + SVN T+Q ++ GS    
Sbjct: 205  VIAVISSKKSSPSLQYVTSTLIAHEGRIAHKISSN------DLSVNYTSQYSNRGSSSSW 258

Query: 1017 TQN-YIGRGF 1043
              N Y   GF
Sbjct: 259  NSNGYPSSGF 268



 Score = 76.6 bits (187), Expect(2) = 4e-29
 Identities = 41/112 (36%), Positives = 57/112 (50%)
 Frame = +1

Query: 337 IQPQGQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPERITVDDNNQKIINPE 516
           I P  QL+T++L D+NFL+W+ Q+   VRGYGLEGFL GT   P ++  D     + NP+
Sbjct: 36  ISPLSQLITMRLEDDNFLMWKYQIENVVRGYGLEGFLFGTEQVPPKMVNDGTGILVPNPK 95

Query: 517 FSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKL 672
           F  + RQD                   VG  S+  VW  +  +F SQ   K+
Sbjct: 96  FRDYQRQDHLLISWLLSSIGSAFLPQVVGCSSAFEVWNTISHNFNSQSSAKV 147


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score = 99.4 bits (246), Expect(2) = 1e-27
 Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 1/247 (0%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSLR 887
            G +++  Y+ K++ + D L + G  +D+ + + +  +GL  E+ PVI +I  R +P ++ 
Sbjct: 138  GDMNITTYVGKMRALADDLMAVGKPVDDDELIGYIFAGLDDEFEPVISTIVGRPDPVTIG 197

Query: 888  EAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGF-YTXXXXX 1064
            E +A L+S+E RL    +   ++ N +     Q    GSR G   N  GRG         
Sbjct: 198  ETYAQLISFEQRLAHRRSGDQSSVNSASRSRGQPQRGGSRSGGDSNR-GRGAPSNGANRG 256

Query: 1065 XXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXXXXX 1244
                                P+CQ+C+  GH    C+YR + NFVP              
Sbjct: 257  RGRGNPSGGRANVGGGTDNRPKCQLCYKRGHTVCDCWYRYDENFVPDE------------ 304

Query: 1245 XXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQGSER 1424
                              A T+    V D +WY D+GAT+HVT ++  L +   Y G+++
Sbjct: 305  ----------------RFAGTAVSYGV-DTNWYLDTGATDHVTGELDKLTVRDKYHGNDQ 347

Query: 1425 VQTASGS 1445
            V TASG+
Sbjct: 348  VHTASGA 354



 Score = 52.4 bits (124), Expect(2) = 1e-27
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 3/139 (2%)
 Frame = +1

Query: 304 NAGNNSAGIQVIQPQGQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPERITV 483
           ++  N+ G  ++   GQ ++ KL  +N  VW+ Q+LA +RG  LEG L G    P  I  
Sbjct: 3   SSSKNNTGNPLV---GQPVSEKLGKSNHAVWKAQILATIRGARLEGHLTGDDQPPAPILR 59

Query: 484 DDNNQK---IINPEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFAS 654
               +K   + NPE+  W+  DQ                      ++ + W  +   F S
Sbjct: 60  RKEGEKEVVVSNPEYEEWVATDQQVLAYLLSSMTKDLLVQVATCRTAASAWSMIQGMFGS 119

Query: 655 QIELKLCNINCNFKLSRKG 711
               +  N   +    +KG
Sbjct: 120 MTRARTINTRLSLSTLQKG 138


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 94.0 bits (232), Expect(2) = 1e-25
 Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 3/249 (1%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSLR 887
            G  S+ +Y  K++   D L +AG  +D+ + V   L+GL  ++NP++ ++ +R +P +  
Sbjct: 139  GASSVAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPG 198

Query: 888  EAHAILLSYENRLEV---SDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGFYTXXX 1058
            + +  LLSYENR+ +   S ++  ++ N        S      RG ++   GRG      
Sbjct: 199  DLYTQLLSYENRMHLQTGSSSLMQSSANARSPGRGMSWGRSGGRGFSRGR-GRGRGPSRG 257

Query: 1059 XXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXXX 1238
                                  PRCQ+C   GH A  C+YR + N+VP            
Sbjct: 258  GFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQ---------- 307

Query: 1239 XXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQGS 1418
                                A+++  ++  ++ WY D+GAT+H+T D+  L +   Y G+
Sbjct: 308  ------------------RSANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGT 349

Query: 1419 ERVQTASGS 1445
            +++  A+G+
Sbjct: 350  DQIIAANGT 358



 Score = 50.8 bits (120), Expect(2) = 1e-25
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
 Frame = +1

Query: 367 KLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPERITVD--DNNQKIINPEFSAWMRQD 540
           KL   N+L+W+ QVL A+R   L+  L G    P +   D  D    + NP +  W+ +D
Sbjct: 23  KLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWIARD 82

Query: 541 QXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNINCNFKLSRKG 711
           Q                  V   +S +VW  L   ++S    +  N       ++KG
Sbjct: 83  QAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKG 139


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score = 95.1 bits (235), Expect(2) = 2e-25
 Identities = 71/262 (27%), Positives = 116/262 (44%), Gaps = 10/262 (3%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAG-HGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSL 884
            G +S  +Y  K+K + D +A+AG   IDE + + + ++GLG  Y+ V+ ++ +R+EP S+
Sbjct: 224  GNMSTPEYFAKMKSLGDEMATAGGRPIDEEELIQYIITGLGEGYSEVVSAVCARVEPISV 283

Query: 885  REAHAILLSYENR-------LEVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGF 1043
             + ++ +L++E R        EV+ NVAN            +   G  RG      GRG 
Sbjct: 284  SDLYSQVLNFEARQAIYRGAQEVTVNVANRGGFSHGGRGNSNGGQGGSRGGGGGGHGRG- 342

Query: 1044 YTXXXXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXX 1223
                                       P CQ+C   GH A  C+YR + ++VP       
Sbjct: 343  ---------NGGGGRGRGRTPGGVDKRPICQVCFKRGHTAADCWYRYDEDYVP------- 386

Query: 1224 XXXXXXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIAS 1403
                                 A ++A+ +      D +WY D+GAT+HVT ++  L +  
Sbjct: 387  --------------------DAKHVAAAAVNSYGVDTNWYIDTGATDHVTGELDKLTMKE 426

Query: 1404 DYQGSERVQTASGSE--YCNRD 1463
             Y G E++ TASG+   Y +RD
Sbjct: 427  KYNGGEQIHTASGAGHIYISRD 448



 Score = 48.9 bits (115), Expect(2) = 2e-25
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
 Frame = +1

Query: 346 QGQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPE---RITVDDNNQKIINPE 516
           QG  ++ KL   N  +W+ QV AAVRG  L+G L G   +P     +T D   +K  NP 
Sbjct: 100 QGHPISEKLGKANHALWKVQVSAAVRGARLQGHLTGATKRPPAEIAVTKDGATKKEPNPA 159

Query: 517 FSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNINCNFK 696
              W   DQ                     +++  VW A++  +++    +  N      
Sbjct: 160 HEDWEATDQQVLGYLLSSLTREVLMQVATCDTAAEVWSAIEQMYSTHTRARAINTRFALT 219

Query: 697 LSRKG 711
            ++KG
Sbjct: 220 NTKKG 224


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  122 bits (305), Expect = 5e-25
 Identities = 78/264 (29%), Positives = 127/264 (48%), Gaps = 1/264 (0%)
 Frame = +3

Query: 654  SNRAKIMXXXXXXXXXXXGTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSE 833
            S+RA+IM           G++SM DY+ KIK   D LA+ G  + E DQV++ L GLGS+
Sbjct: 131  SSRARIMQLRLELQSTKKGSMSMIDYIMKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSD 190

Query: 834  YNPVIVSITSRMEPCSLREAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRG 1013
            YN V+ +I  R +  SL   H++LL++E+RLE   ++   + N++ +   +        G
Sbjct: 191  YNAVVTAINIRDDKISLEAIHSMLLAFEHRLEQQSSIEQMSANYASSSNNRGGGRKFNGG 250

Query: 1014 ATQNYI-GRGFYTXXXXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNL 1190
              Q Y      YT                         P+CQ+C   GH A  C++R ++
Sbjct: 251  RGQGYSPNNNNYT--YRGRGRGGRNGQGGRQNSSPSEKPQCQLCGKFGHTAQICYHRFDI 308

Query: 1191 NFVPGNSRXXXXXXXXXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHV 1370
            +F  G +                     ++ PA+  ++++ P    D SWY DSGA++H+
Sbjct: 309  SFQGGQTTISHSLNNGN----------QNNIPAMVASASNNP---ADESWYLDSGASHHL 355

Query: 1371 TFDMGNLNIASDYQGSERVQTASG 1442
            T ++GNL   S Y G+++V   +G
Sbjct: 356  TQNLGNLTSTSPYTGTDKVTIGNG 379



 Score = 64.7 bits (156), Expect = 1e-07
 Identities = 37/130 (28%), Positives = 59/130 (45%)
 Frame = +1

Query: 322 AGIQVIQPQGQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPERITVDDNNQK 501
           A I   Q     L VKL   N+++WR Q+   +   G E F+DGT   PE+    D +  
Sbjct: 24  ASIPSYQMLNHTLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSICPEK----DLSPG 79

Query: 502 IINPEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNI 681
           ++NP F AW RQD+                  +G  +S + W AL+  F+S    ++  +
Sbjct: 80  VMNPAFVAWRRQDRTILSWIYSSLTPGIMAQIIGHNTSHSAWNALESIFSSSSRARIMQL 139

Query: 682 NCNFKLSRKG 711
               + ++KG
Sbjct: 140 RLELQSTKKG 149


>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1202

 Score = 98.6 bits (244), Expect(2) = 9e-25
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 2/247 (0%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSI--TSRMEPCS 881
            G +S+ +Y+ K++ + D +A+AG  +DE + V + ++GL SE++  +  +  T+R+ P S
Sbjct: 143  GPMSISEYIAKMRSLADEMAAAGKPLDEEELVAYIINGLDSEFDAAVEGLMATARIAPVS 202

Query: 882  LREAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGFYTXXXX 1061
            +   ++ LLSYENR+ +      T    S N   +    G R  +T N  G G       
Sbjct: 203  ISHVYSQLLSYENRIRIRQAYLTT----SANAANRGGGRGGRGSSTGNR-GGGRGGFGRG 257

Query: 1062 XXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXXXX 1241
                                 P CQ+CH  GH+A  C++R + ++VP             
Sbjct: 258  GRGRGAPSGASQGRGRGNDTRPVCQVCHKRGHVASDCWHRYDDSYVPDE----------- 306

Query: 1242 XXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQGSE 1421
                              +   +T     D +WY D+GAT+H+T  +  L     Y+G++
Sbjct: 307  -----------------KLGGAATYAYGIDTNWYVDTGATDHITGQLDKLTTKERYKGTD 349

Query: 1422 RVQTASG 1442
            ++ TASG
Sbjct: 350  QIHTASG 356



 Score = 43.5 bits (101), Expect(2) = 9e-25
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
 Frame = +1

Query: 349 GQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQP----ERITVD-DNNQKII-- 507
           G  ++ KL   N  +W  Q+L  +RG  LE  +  T   P    E+   D D   KI+  
Sbjct: 16  GLQISEKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKKTKIVIP 75

Query: 508 NPEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNINC 687
           NPE+  W  QDQ                   G  ++   W  +D  F+ + +    N+  
Sbjct: 76  NPEYKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAGTINVLL 135

Query: 688 NFKLSRKG 711
               ++KG
Sbjct: 136 ALTTTQKG 143


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score = 98.6 bits (244), Expect(2) = 9e-25
 Identities = 65/249 (26%), Positives = 111/249 (44%), Gaps = 4/249 (1%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSI--TSRMEPCS 881
            G +S+ +Y+ K++ + D +A+ G  +DE + V + ++GL SE++  +  +  T+R+ P S
Sbjct: 143  GPMSISEYIAKMRSLADEMAATGKPLDEEELVAYIINGLDSEFDAAVEGLMATARIAPVS 202

Query: 882  LREAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGR--GFYTXX 1055
            +   ++ LLSYENR+ +      T    S N   +    G R  +T N  GR  GF    
Sbjct: 203  ISHVYSQLLSYENRIRIRQAYLTT----SANAANRGGGRGGRGSSTGNRGGRRGGF---G 255

Query: 1056 XXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXX 1235
                                   P CQ+CH  GH+A  C++R + ++VP           
Sbjct: 256  RGGRGRGAPSGASQGRGRGNDTRPVCQVCHKRGHVASDCWHRYDDSYVPDE--------- 306

Query: 1236 XXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQG 1415
                                +   +T     D +WY D+GAT+H+T  +  L     Y+G
Sbjct: 307  -------------------KLGGAATYAYGVDTNWYVDTGATDHITGQLDKLTTKERYKG 347

Query: 1416 SERVQTASG 1442
            ++++ TASG
Sbjct: 348  TDQIHTASG 356



 Score = 43.5 bits (101), Expect(2) = 9e-25
 Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 7/128 (5%)
 Frame = +1

Query: 349 GQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQP----ERITVD-DNNQKII-- 507
           G  ++ KL   N  +W  Q+L  +RG  LE  +  T   P    E+   D D   KI+  
Sbjct: 16  GLQISEKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKKTKIVIP 75

Query: 508 NPEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNINC 687
           NPE+  W  QDQ                   G  ++   W  +D  F+ + +    N+  
Sbjct: 76  NPEYKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFSCKSKAGTINVLL 135

Query: 688 NFKLSRKG 711
               ++KG
Sbjct: 136 ALTTTQKG 143


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score = 92.8 bits (229), Expect(2) = 1e-24
 Identities = 72/256 (28%), Positives = 115/256 (44%), Gaps = 10/256 (3%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAG-HGIDETDQVLHALSGLGSEYNPVIVSITSRMEPCSL 884
            G +S  +Y  K+K + D +A+AG   IDE + + + ++GLG  Y+ V+ ++ +R+EP S+
Sbjct: 138  GNMSTPEYFAKMKSLGDEMATAGGRPIDEEELIQYIITGLGEGYSEVVSAVCARVEPISV 197

Query: 885  REAHAILLSYENRL-------EVSDNVANTTDNFSVNLTTQSTSP--GSRRGATQNYIGR 1037
             + ++ +L++E R        EV+ NVAN    FS      S     GSR G      GR
Sbjct: 198  SDLYSQVLNFEARQAIYRGAQEVTVNVANR-GGFSHGGRGNSNGGQGGSRGGGGGGGHGR 256

Query: 1038 GFYTXXXXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRX 1217
            G                            P CQ+C   GH A  C+YR + ++VP     
Sbjct: 257  G----------NGGGGHGRGRTPGGVDKRPICQVCFKRGHTAADCWYRYDEDYVP----- 301

Query: 1218 XXXXXXXXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNI 1397
                                   A ++A+ +      D +WY D+GAT+HVT ++  L +
Sbjct: 302  ----------------------DAKHVAAAAVNSYGVDTNWYIDTGATDHVTGELDKLTM 339

Query: 1398 ASDYQGSERVQTASGS 1445
               Y G E++ TASG+
Sbjct: 340  KEKYNGGEQIHTASGA 355



 Score = 48.9 bits (115), Expect(2) = 1e-24
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
 Frame = +1

Query: 346 QGQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPE---RITVDDNNQKIINPE 516
           QG  ++ KL   N  +W+ QV AAVRG  L+G L G   +P     +T D   +K  NP 
Sbjct: 14  QGHPISEKLGKANHALWKVQVSAAVRGARLQGHLTGATKRPPAEIAVTKDGATKKEPNPA 73

Query: 517 FSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNINCNFK 696
              W   DQ                     +++  VW A++  +++    +  N      
Sbjct: 74  HEDWEATDQQVLGYLLSSLTREVLMQVATCDTAAEVWSAIEQMYSTHTRARAINTRFALT 133

Query: 697 LSRKG 711
            ++KG
Sbjct: 134 NTKKG 138


>gb|AAX95626.1| Zinc knuckle, putative [Oryza sativa Japonica Group]
            gi|108709341|gb|ABF97136.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 535

 Score = 90.9 bits (224), Expect(2) = 2e-24
 Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 2/247 (0%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSI--TSRMEPCS 881
            G +S+ +Y+ K++ + D +A AG  +D+ + + + ++GL S+++  +  +  T+R+ P S
Sbjct: 253  GPISISEYIAKMRSLGDEMAGAGKPLDDEELIAYIINGLNSDFDATVEGLMATARIAPLS 312

Query: 882  LREAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGFYTXXXX 1061
            +   ++ LLSYENR+ +      T+ N        + + G R G   N  GR        
Sbjct: 313  ISHVYSQLLSYENRIRIRQAYLTTSAN--------AANRGGRGGRGGNRGGRSSAPHGGR 364

Query: 1062 XXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXXXX 1241
                                 P CQ+CH  GH+A  C++R + N+               
Sbjct: 365  GGGRGNTGGANPGRGRGNDTRPVCQVCHKRGHVASDCWHRYDENY--------------- 409

Query: 1242 XXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQGSE 1421
                          P   +   +T     D +WY D+ AT+H+T  +  L     Y+G++
Sbjct: 410  -------------GPDEKLGGAATYAYGVDTNWYVDTRATDHITGQLDKLTTREKYKGTD 456

Query: 1422 RVQTASG 1442
             + T SG
Sbjct: 457  LIHTVSG 463



 Score = 50.4 bits (119), Expect(2) = 2e-24
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 6/140 (4%)
 Frame = +1

Query: 310 GNNSAGIQVIQPQ-GQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQPERITVD 486
           G++S+ + +  P  G  +  K    N  +W  Q+L  +RG  LEG++ GT   P      
Sbjct: 114 GDSSSAVVISNPLFGIQILEKFTKQNHSLWSAQILTTLRGAQLEGYITGTAEAPAAECEK 173

Query: 487 DNNQK-----IINPEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFA 651
           ++  K     I NPE+  W  QDQ                   G +++   W  ++  F 
Sbjct: 174 EDGDKKVKTTISNPEYIKWFTQDQQVLGFLFSSLSREVLQQVAGAKTAAQAWSMINDMFT 233

Query: 652 SQIELKLCNINCNFKLSRKG 711
            + +    N+      ++KG
Sbjct: 234 CKSKAGAINVLLALTTTQKG 253


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score = 99.4 bits (246), Expect(2) = 6e-24
 Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 2/247 (0%)
 Frame = +3

Query: 708  GTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSEYNPVIVSI--TSRMEPCS 881
            G +SM +Y+ K++ + D +A+ G  +DE + V + ++GL SE++  +  +  T+R+ P S
Sbjct: 134  GPMSMSEYIAKMRSLADKMAATGKPLDEEELVAYIINGLDSEFDAAVEGLMATARIAPVS 193

Query: 882  LREAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRGATQNYIGRGFYTXXXX 1061
            +   ++ LLSYENR+ +      T    S N   +    G R  +T N  G G       
Sbjct: 194  ISHVYSQLLSYENRIRIRQAYLTT----SANAANRGGGRGGRGSSTGNR-GGGRGGFGRG 248

Query: 1062 XXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCFYRTNLNFVPGNSRXXXXXXXXX 1241
                                 P CQ+CH  GH+A  C++R + ++VP             
Sbjct: 249  GHGRGAPSGASQGRGRGNDTRPVCQVCHKRGHVASDCWHRYDDSYVPDE----------- 297

Query: 1242 XXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSGATNHVTFDMGNLNIASDYQGSE 1421
                              +   +T     D +WY D+GAT+H+T  +  L     Y+G++
Sbjct: 298  -----------------KLGGAATYAYGVDTNWYVDTGATDHITGQLDKLTTKERYKGTD 340

Query: 1422 RVQTASG 1442
            ++ TASG
Sbjct: 341  QIHTASG 347



 Score = 40.0 bits (92), Expect(2) = 6e-24
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
 Frame = +1

Query: 349 GQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQP----ERITVD-DNNQKII-- 507
           G  ++ KL   N  +W  Q+L  +RG  LE  +  T   P    E+   D D   KI+  
Sbjct: 16  GLQISDKLTKQNHPLWAAQILTTLRGAQLEEHIVSTTAAPAAEIEKEDGDKDKKTKIVIP 75

Query: 508 NPEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFA 651
           NPE+  W  QDQ                   G  ++   W  +D  F+
Sbjct: 76  NPEYKTWFVQDQQVLGFIFSSLSREVLQQVAGARTAAQAWNMIDDMFS 123


>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
          Length = 646

 Score =  117 bits (293), Expect = 1e-23
 Identities = 75/269 (27%), Positives = 125/269 (46%), Gaps = 6/269 (2%)
 Frame = +3

Query: 654  SNRAKIMXXXXXXXXXXXGTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSE 833
            ++RA+IM           G LS+ DY+ +I+++CD L + G  +   DQV+  L+GLGSE
Sbjct: 150  ASRARIMELRLQLQTTRKGGLSVMDYMLRIQHICDHLRAIGESVSIDDQVMAVLAGLGSE 209

Query: 834  YNPVIVSITSRMEPCSLREAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRG 1013
            YNP++ SITSR++  S++   + L +YE RLE+ ++V         N    +++ G R+ 
Sbjct: 210  YNPIVASITSRLDSISVQALQSYLETYEKRLEIQNSVEQHIP-LQANAAMYNSNRGKRKP 268

Query: 1014 ATQNY------IGRGFYTXXXXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCF 1175
              QN+      +                               P+CQIC   GH+A +C+
Sbjct: 269  YQQNFHHSQTPVTATHNFNHRNSSQGGFRGGHSNKGRANPGSRPQCQICCKIGHVATECW 328

Query: 1176 YRTNLNFVPGNSRXXXXXXXXXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSG 1355
            +R +  F P  S                     S S     A  + P  + +  W+ D+G
Sbjct: 329  HRFDNQFQPKASHSNQF----------------SSSAQDPQALMAAPGLLGETPWFLDTG 372

Query: 1356 ATNHVTFDMGNLNIASDYQGSERVQTASG 1442
            AT+HVT D+ NL++ + + G ++V   +G
Sbjct: 373  ATHHVTSDLANLSLHNPFSGDDKVIVGNG 401



 Score = 66.6 bits (161), Expect = 3e-08
 Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
 Frame = +1

Query: 349 GQLLTVKLCDNNFLVWRQQVLAAVRGYGLEGFLDGTLPQP-ERITVDD-----NNQKIIN 510
           GQ LT+KL  NNFL+WR Q+L  V   G E  L+GT   P + I V D     +   I+N
Sbjct: 42  GQTLTIKLDRNNFLIWRNQLLNIVVANGYEDILEGTRSCPYQWIAVTDTASTTHGSVILN 101

Query: 511 PEFSAWMRQDQXXXXXXXXXXXXXXXXXTVGLESSKAVWEALDISFASQIELKLCNINCN 690
           PE+  W RQ++                  +   S+  +W AL  S+AS    ++  +   
Sbjct: 102 PEYVLWQRQNRLVMSWIYSSLTEQMMTQIMAYNSACEIWTALRESYASASRARIMELRLQ 161

Query: 691 FKLSRKG 711
            + +RKG
Sbjct: 162 LQTTRKG 168


>emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]
          Length = 1635

 Score =  117 bits (293), Expect = 1e-23
 Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 6/269 (2%)
 Frame = +3

Query: 654  SNRAKIMXXXXXXXXXXXGTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSE 833
            S+RA+IM           G+LSM DY+ K+K   D LA+ G  I E DQV++ L GLGS+
Sbjct: 24   SSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIGEPILEQDQVMNLLDGLGSD 83

Query: 834  YNPVIVSITSRMEPCSLREAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRRG 1013
            YN V+ +I  R +  S+   H++LL++E+RLE   ++    + FS      ++S  SR G
Sbjct: 84   YNAVVTAINIRDDKISIEAVHSMLLAFEHRLEQQSSI----EQFSPISANYASSXNSRGG 139

Query: 1014 ATQNYIGRG------FYTXXXXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSGHMADKCF 1175
              +   GRG                                  P+CQ+C   GH    C+
Sbjct: 140  GRRYNGGRGQNHTPNISNYTYRGRGRGGRYGXNGRHNSNSFEKPQCQLCGKFGHTVQICY 199

Query: 1176 YRTNLNFVPGNSRXXXXXXXXXXXXXXXXXXLPSHSPAVNIASTSTPESVQDISWYPDSG 1355
            +R ++++    S                    P+  PA+ +AS++   ++ D +WY DSG
Sbjct: 200  HRFDISYQSSQS----------INTSPSNAGNPNSIPAM-VASSN---NLADDTWYLDSG 245

Query: 1356 ATNHVTFDMGNLNIASDYQGSERVQTASG 1442
            A++H+T  +GNL  +S Y G+++V   +G
Sbjct: 246  ASHHLTQSVGNLTSSSPYTGTDKVTIGNG 274


>emb|CAN77295.1| hypothetical protein VITISV_005638 [Vitis vinifera]
          Length = 1198

 Score =  116 bits (291), Expect = 2e-23
 Identities = 81/276 (29%), Positives = 127/276 (46%), Gaps = 13/276 (4%)
 Frame = +3

Query: 654  SNRAKIMXXXXXXXXXXXGTLSMRDYLNKIKYVCDLLASAGHGIDETDQVLHALSGLGSE 833
            S+RA+IM           G+LSM DY+ K+K   D LA+ G  + E DQV++ L GLGS+
Sbjct: 24   SSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIGEPVSEQDQVMNLLGGLGSD 83

Query: 834  YNPVIVSITSRMEPCSLREAHAILLSYENRLEVSDNVANTTDNFSVNLTTQSTSPGSRR- 1010
            YN V+ +I  + +  S+   H++LL++E+RLE   ++   + + S N  + S S GS R 
Sbjct: 84   YNAVVTAINIKDDKISIEVVHSMLLAFEHRLEQQSSIEQFS-SISANYASSSNSRGSGRR 142

Query: 1011 ---GATQN---------YIGRGFYTXXXXXXXXXXXXXXXXXXXXXXXXXPRCQICHYSG 1154
               G  QN         Y GRG                            P+CQ+C   G
Sbjct: 143  YNGGRGQNHTPNISNYTYRGRG----------RGGRYGQNGRHNSNSSEKPQCQLCGKFG 192

Query: 1155 HMADKCFYRTNLNFVPGNSRXXXXXXXXXXXXXXXXXXLPSHSPAVNIASTSTPESVQDI 1334
            H    C+++ ++++    S                    P+  PA+  +S +  E     
Sbjct: 193  HTVQICYHKFDISYQSSQSSNTSPSNASN----------PNSIPAMVASSNNLAED---- 238

Query: 1335 SWYPDSGATNHVTFDMGNLNIASDYQGSERVQTASG 1442
            +WY DSGA +H+T  +GNL  +S Y G ++V   +G
Sbjct: 239  TWYLDSGANHHLTQSVGNLTSSSPYTGIDKVTIGNG 274