BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00006611
         (985 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   191   5e-46
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    185   2e-44
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   177   6e-42
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi...   176   9e-42
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     171   3e-40
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        171   5e-40
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   170   7e-40
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   170   7e-40
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   170   9e-40
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           168   3e-39
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   167   4e-39
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   167   7e-39
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                166   2e-38
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   165   2e-38
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   164   4e-38
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              164   5e-38
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              164   6e-38
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        164   6e-38
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     163   8e-38
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   163   8e-38

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  191 bits (484), Expect = 5e-46
 Identities = 116/328 (35%), Positives = 167/328 (50%), Gaps = 1/328 (0%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKVSRGSKQSSGEVMHVRGR 804
            I+LLN++P SY ++ + I +G+ +I L  V + L   E   K  +   Q    +   RGR
Sbjct: 146  ILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRK--KPENQGQALITEGRGR 203

Query: 803  SQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNFNNYQS 624
            S  R +N                    +  R CYNC + GH+ R+CP  ++ +   + Q 
Sbjct: 204  SYQRSSNN----YGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQK 259

Query: 623  NDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSNYKEV 444
            ND    A    +   V  + +  + ++   P+S  +W++D+A + H TP R+LF  Y   
Sbjct: 260  NDDNTAAMVQNNDNVVLFINEEEECMHLSGPES--EWVVDTAASHHATPVRDLFCRYVAG 317

Query: 443  VNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLEGR 264
              G+V M N   SKIAGIGD+C+K   G  L LK+VRHVPDL  NLIS  AL+ DG E  
Sbjct: 318  DFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESY 377

Query: 263  WGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQSD-KTDLWHKRLGHM 87
            +     ++ KG+LVI K   +  LY  NAE          +N+ Q +   DLWHKR+GHM
Sbjct: 378  FANQKWRLTKGSLVIAKGVARGTLYRTNAE-----ICQGELNAAQDEISVDLWHKRMGHM 432

Query: 86   SAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            S KGL+IL K       K + +  CD C
Sbjct: 433  SEKGLQILAKKSLISYAKGTTVKPCDYC 460


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  185 bits (470), Expect = 2e-44
 Identities = 116/328 (35%), Positives = 167/328 (50%), Gaps = 3/328 (0%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKVSRGSKQSSGEVM--HVR 810
            IVLLN++P SY  + + I +G+DSI L  V + L   E      R   ++ G+V     R
Sbjct: 147  IVLLNSLPSSYDTLSTTILHGKDSIQLKDVTSALLLNEK----MRKKPENHGQVFITESR 202

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNFNNY 630
            GRS  R    + S                +  R CYNC + GH+ R+CP  K+ +  ++ 
Sbjct: 203  GRSYQR----SSSNYGRSGARGKSKVRSKSKARNCYNCDQPGHFKRDCPNPKRGKGESSG 258

Query: 629  QSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSNYK 450
            Q ND    A    +   V ++ +  + ++    +S  +W++D+A ++H TP R+LF  Y 
Sbjct: 259  QKNDDNTAAMVQNNDDVVLLINEEEECMHLAGTES--EWVVDTAASYHATPVRDLFCRYV 316

Query: 449  EVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGLE 270
                G+V M N   SKIAGIGD+C K   G  L LK+VRHVPDL  NLIS  AL+ DG E
Sbjct: 317  AGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLVLKDVRHVPDLRMNLISGIALDQDGYE 376

Query: 269  GRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSV-QSDKTDLWHKRLG 93
              +     ++ KG LVI K   +  LY  NAE          +N+  + +  DLWHKR+G
Sbjct: 377  NYFANQKWRLTKGALVIAKGVARGTLYRTNAE-----ICQGELNAAHEENSADLWHKRMG 431

Query: 92   HMSAKGLEILHKNGCFGKDKLSCMPFCD 9
            H S KGL+IL K       K + +  C+
Sbjct: 432  HTSEKGLQILSKKSLISFTKGTTIKPCN 459


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  177 bits (449), Expect = 6e-42
 Identities = 105/330 (31%), Positives = 175/330 (53%), Gaps = 3/330 (0%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYG--RDSITLDTVVNGLKSKELDLKVSRGSKQSSGEVMHVR 810
            I+LL+++P  Y  +   +KY   R+ + LD V+   + KE +L  +    +   E    R
Sbjct: 136  ILLLSSLPARYDGLVETMKYSNSREKLRLDDVMVAARDKERELSQNN---RPVVEGHFAR 192

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKG-KQNQNFNN 633
            GR   + NNQ                   +  R C+ CG+ GH+ + C K  ++N++   
Sbjct: 193  GRPDGKNNNQGNK------GKNRSRSKSADGKRVCWICGKEGHFKKQCYKWIERNKSKQQ 246

Query: 632  YQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSNY 453
               N ++++A ++ +     MV    D    V+   A +W++D+ C+FHMTP ++ F ++
Sbjct: 247  GSDNGESSLAKSTEAFNPA-MVLLATDETLVVTDSIANEWVLDTGCSFHMTPRKDWFKDF 305

Query: 452  KEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGL 273
            KE+ +G V M N+  S + GIG + ++   G  + L +VR++P++  NLIS   LED G 
Sbjct: 306  KELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDRGC 365

Query: 272  EGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKRLG 93
              +   G++KI+KG   I K +K+  LY+ +  +E E   H+S      D+T LWH RLG
Sbjct: 366  WFKSQDGILKIVKGCSTILKGQKRDTLYILDGVTE-EGESHSSAE--VKDETALWHSRLG 422

Query: 92   HMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            HMS KG+EIL K GC  ++ +  + FC+ C
Sbjct: 423  HMSQKGMEILVKKGCLRREVIKELEFCEDC 452


>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  176 bits (447), Expect = 9e-42
 Identities = 99/332 (29%), Positives = 176/332 (53%), Gaps = 5/332 (1%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKVSRGSKQSSGEVMHV--R 810
            IVLL ++P+ +  +K  +KYG+ ++ LD +   ++SK L+L  S    ++S + + V  R
Sbjct: 158  IVLLMSLPKQFDQLKDTLKYGKTTLALDEITGAIRSKVLELGASGKMLKNSSDALFVQDR 217

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQ-NQNFNN 633
            GRS+ R  +  ++              +    + C+ CG+ GH+ + C   K+ N+  NN
Sbjct: 218  GRSEKRDKSSERN--------KSQSRSKSREKKVCWVCGKEGHFKKQCYVWKEKNKKGNN 269

Query: 632  YQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSNY 453
             +  + +N+   +     + +     +  N  + +   +W++D+ C+FHMTP R+ F  +
Sbjct: 270  SEKGESSNVIGQAADAAALAVR----EESNADNQEVDNEWIMDTGCSFHMTPRRDWFVEF 325

Query: 452  KEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDGL 273
             E   G V MAN+  S+I GIG + ++ +    + LKNVR+VP +  NLIS   LED G 
Sbjct: 326  DESQTGRVKMANQTYSEIKGIGSIRIQNDDNTTVLLKNVRYVPSMSKNLISMGTLEDQGC 385

Query: 272  EGRWGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSVQS--DKTDLWHKR 99
              +   G +K++KG + + K +K   LY+          V  + N+V S  D++ +WH R
Sbjct: 386  WFQSKAGTLKVVKGCMTLLKGKKVGTLYLLQG-----VVVTGNANAVTSSKDESKIWHSR 440

Query: 98   LGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            L HMS + +++L K GC   +K++ + FC+ C
Sbjct: 441  LCHMSQRNIDVLIKKGCLQAEKINGLEFCEDC 472


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  171 bits (434), Expect = 3e-40
 Identities = 110/337 (32%), Positives = 170/337 (50%), Gaps = 10/337 (2%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV--SRGSKQSSGEVMHVR 810
            ++LL ++P SY++ +  I Y RD++TL  V + L +KE   K+  S GS  S  E + VR
Sbjct: 54   LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSN-SQAEGLVVR 112

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNC----PKGKQNQN 642
            GR Q +  N N                     + C  C   GH I  C     K K+ + 
Sbjct: 113  GRQQEK--NTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRK 170

Query: 641  F---NNYQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFR 471
            +      +   +A + +   S  ++ + Y  C        +++ QW++D+ACT+HM P R
Sbjct: 171  YIPKGKKEEEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACTYHMCPNR 223

Query: 470  NLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAA 291
            + F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+P+L  +LIS   
Sbjct: 224  DWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCT 283

Query: 290  LEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTD 114
            L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +    S +   SD T+
Sbjct: 284  LDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDATN 343

Query: 113  LWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            LWH RLGHMS  GL  L K G      +  + FC+ C
Sbjct: 344  LWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHC 380


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  171 bits (432), Expect = 5e-40
 Identities = 112/344 (32%), Positives = 169/344 (49%), Gaps = 17/344 (4%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV--SRGSKQSSGEVMHVR 810
            ++LL ++P SY++ +  I Y RD++TL  V + L +KE   K+  S GS  S  E + VR
Sbjct: 145  LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSN-SQAEGLVVR 203

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNC------------ 666
            G  Q +  N N                     + C  C   GH I  C            
Sbjct: 204  GSQQEK--NTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGK 261

Query: 665  --PKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACT 492
              PKGK+ +         +A + +   S  ++ + Y  C        +++ QW++D+ACT
Sbjct: 262  YIPKGKKEEE-------GKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACT 307

Query: 491  FHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCN 312
            +HM P R+ F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+P+L  
Sbjct: 308  YHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 367

Query: 311  NLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNS 135
            +LIS   L+  G +   G G++K+ KG+LV+ KA  K  NLY     +   +    S + 
Sbjct: 368  SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTILGNVATVSDSL 427

Query: 134  VQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
              SD T+LWH RLGHMS  GL  L K G      +S + FC+ C
Sbjct: 428  SNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHC 471


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  170 bits (431), Expect = 7e-40
 Identities = 110/336 (32%), Positives = 170/336 (50%), Gaps = 9/336 (2%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV---SRGSKQSSGEVMHV 813
            ++LL ++P SY++ +  I   RD +TL  V + L++KE  +K+   + GS  S GE +HV
Sbjct: 143  LLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE-KMKIMVQNDGSSSSKGEALHV 201

Query: 812  RGRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNFNN 633
            RGR++ R +N+                  P N + C  C    H I  C K +  +  N 
Sbjct: 202  RGRTENRTSNEKN-----YDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNK 256

Query: 632  YQSN-DQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSN 456
                   A+ A++   +GD  +V+  C + +        +W++DSAC+FH+   RN FS+
Sbjct: 257  KDGKVSVASAAASDDDSGDCLVVFAGCVAGHD-------EWILDSACSFHICTKRNWFSS 309

Query: 455  YKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDD 279
            YK V  G V+ M ++    I GIG V +K + G   TLKNVR++P +  NLIS + L+ +
Sbjct: 310  YKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAE 369

Query: 278  GLEGRWGKGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDL 111
            G +     GV+K+ KG+LV  K +     LYV   C       +    +V + +  KT+L
Sbjct: 370  GYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAA--AVTNDEPSKTNL 427

Query: 110  WHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            WH RLGHMS  G+  L K         S + FC+ C
Sbjct: 428  WHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHC 463


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  170 bits (431), Expect = 7e-40
 Identities = 110/336 (32%), Positives = 170/336 (50%), Gaps = 9/336 (2%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV---SRGSKQSSGEVMHV 813
            ++LL ++P SY++ +  I   RD +TL  V + L++KE  +K+   + GS  S GE +HV
Sbjct: 143  LLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE-KMKIMVQNDGSSSSKGEALHV 201

Query: 812  RGRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNFNN 633
            RGR++ R +N+                  P N + C  C    H I  C K +  +  N 
Sbjct: 202  RGRTENRTSNEKN-----YDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNK 256

Query: 632  YQSN-DQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSN 456
                   A+ A++   +GD  +V+  C + +        +W++DSAC+FH+   RN FS+
Sbjct: 257  KDGKVSVASAAASDDDSGDCLVVFAGCVAGHD-------EWILDSACSFHICTKRNWFSS 309

Query: 455  YKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDD 279
            YK V  G V+ M ++    I GIG V +K + G   TLKNVR++P +  NLIS + L+ +
Sbjct: 310  YKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAE 369

Query: 278  GLEGRWGKGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDL 111
            G +     GV+K+ KG+LV  K +     LYV   C       +    +V + +  KT+L
Sbjct: 370  GYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAA--AVTNDEPSKTNL 427

Query: 110  WHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            WH RLGHMS  G+  L K         S + FC+ C
Sbjct: 428  WHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHC 463


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  170 bits (430), Expect = 9e-40
 Identities = 109/336 (32%), Positives = 170/336 (50%), Gaps = 9/336 (2%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV---SRGSKQSSGEVMHV 813
            ++LL ++P SY++ +  I   RD +TL  V + L++KE  +K+   + GS  S GE +HV
Sbjct: 143  LLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE-KMKIMVQNDGSSSSKGEALHV 201

Query: 812  RGRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNFNN 633
            RGR++ R +N+                  P N + C  C    H I  C K +  +  N 
Sbjct: 202  RGRTENRTSNEKN-----YDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNK 256

Query: 632  YQSN-DQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSN 456
                   A+ A++   +GD  +V+  C + +        +W++DSAC+FH+   RN FS+
Sbjct: 257  KDGKVSVASAAASDDDSGDCLVVFAGCVAGHD-------EWILDSACSFHICTKRNWFSS 309

Query: 455  YKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDD 279
            YK V  G V+ M ++    I GIG V +K + G   TLKNVR++P +  NLIS + L+ +
Sbjct: 310  YKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAE 369

Query: 278  GLEGRWGKGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDL 111
            G +     GV+K+ KG+LV  K +     LYV   C       +    ++ + +  KT+L
Sbjct: 370  GYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAA--AITNDEPSKTNL 427

Query: 110  WHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            WH RLGHMS  G+  L K         S + FC+ C
Sbjct: 428  WHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHC 463


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  168 bits (425), Expect = 3e-39
 Identities = 109/336 (32%), Positives = 169/336 (50%), Gaps = 9/336 (2%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV---SRGSKQSSGEVMHV 813
            ++LL ++P SY++ +  I   RD +TL  V + L++KE  +K+   + GS  S GE +HV
Sbjct: 145  LLLLCSLPNSYANFRDTILLSRDELTLKEVYDALQNKE-KMKIMVQNDGSSSSKGEALHV 203

Query: 812  RGRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNFNN 633
            RGR++ + +N+                  P N + C  C    H I  C K +  +  N 
Sbjct: 204  RGRTENKTSNEKN-----YDRRGRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNK 258

Query: 632  YQSN-DQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSN 456
                   A+ A +   +GD  +V+  C + +        +W++DSAC+FH+   RN FS+
Sbjct: 259  KDGKVSVASAAVSDDDSGDCLVVFAGCVAGHD-------EWILDSACSFHICTKRNWFSS 311

Query: 455  YKEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDD 279
            YK V  G V+ M ++    I GIG V +K + G   TLKNVR++P +  NLIS + L+ +
Sbjct: 312  YKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAE 371

Query: 278  GLEGRWGKGVMKILKGNLVIFKAE-KKRNLYV---CNAESEHESYVHNSVNSVQSDKTDL 111
            G +     GV+K+ KG+LV  K +     LYV   C       +    +V + +  KT+L
Sbjct: 372  GYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAA--AVTNDEPSKTNL 429

Query: 110  WHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            WH RLGHMS  G+  L K         S + FC+ C
Sbjct: 430  WHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHC 465


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  167 bits (424), Expect = 4e-39
 Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 5/332 (1%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKE-LDLKVSRGSKQSSGEVMHVRG 807
            ++LL ++P SY + +  I   RD +TL  V   L+++E +   V   +  S GE + V+G
Sbjct: 147  LLLLCSLPSSYENFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVKG 206

Query: 806  RSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNFNNYQ 627
            RS+ R  N +                +    + C  C +  H+I+ C K    QN    +
Sbjct: 207  RSEQRTYNDSND----RDKSKSRGRSKSRGKKFCKYCKKKIHFIKECWK---LQNKEKRK 259

Query: 626  SNDQANMASTS--GSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSNY 453
            S+ +A++ +++    +GD  +V+  C +       S  +W++D+AC+FH+   R+ FS+Y
Sbjct: 260  SDGKASVVTSAKNSDSGDCLVVFAGCVA-------SHDEWILDTACSFHIYINRDWFSSY 312

Query: 452  KEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDG 276
            K V NG V+ M N+   +I GIG V +K   G   TLK+VRH+P +  NLIS + L+ +G
Sbjct: 313  KSVQNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEG 372

Query: 275  LEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKR 99
             +     GV+K+ KG+LV    +    NLYV    + H S    +V   + +KT+LWH R
Sbjct: 373  YKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMR 432

Query: 98   LGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            LGHMS  G+  L K           M FC+ C
Sbjct: 433  LGHMSELGMAELMKRNLLDGCTQGNMKFCERC 464


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
            gi|108708632|gb|ABF96427.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1326

 Score =  167 bits (422), Expect = 7e-39
 Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 5/332 (1%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKE-LDLKVSRGSKQSSGEVMHVRG 807
            ++LL ++P SY++ +  I   RD +TL  V   L+++E +   V   +  S GE + VRG
Sbjct: 147  LLLLCSLPSSYANFRDTILLSRDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRG 206

Query: 806  RSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNFNNYQ 627
            RS+ R  N +                +    + C  C +  H+I  C K    QN    +
Sbjct: 207  RSEQRTYNDSSD----RDKSQSRGRSKSRGKKFCKYCKKKNHFIEECWK---LQNKEKRK 259

Query: 626  SNDQANMASTS--GSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSNY 453
            S+ +A++ +++    +GD  +V+  C +       S  +W++D+AC+FH+   R+ FS+Y
Sbjct: 260  SDGKASVVTSAENSDSGDCLVVFAGCVA-------SHDEWILDTACSFHICINRDWFSSY 312

Query: 452  KEVVNGSVL-MANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDDG 276
            K V NG V+ M ++   +I GIG V +K   G   TLK+VRH+P +  NLIS + L+ +G
Sbjct: 313  KSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEG 372

Query: 275  LEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHKR 99
             +     GV+K+ KG+LV    +    NLYV    + H S    +V+  +  KT+LWH R
Sbjct: 373  YKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMR 432

Query: 98   LGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            LGHMS  G+  L K           M FC+ C
Sbjct: 433  LGHMSELGMAELMKRNLLDGCTQGKMKFCEHC 464


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  166 bits (419), Expect = 2e-38
 Identities = 109/344 (31%), Positives = 168/344 (48%), Gaps = 17/344 (4%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV--SRGSKQSSGEVMHVR 810
            ++LL ++P SY++ +  I Y RD++TL  V + L +KE   K+  S GS  S  E + V+
Sbjct: 130  LILLCSLPSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSN-SQAEGLVVQ 188

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNC------------ 666
            G  Q +  N N                     + C  C   GH I  C            
Sbjct: 189  GSQQEK--NTNNKSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGK 246

Query: 665  --PKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACT 492
              PKGK+       +   +A + +   S  ++ + Y  C        +++ QW++D+ACT
Sbjct: 247  YIPKGKK-------EDEGKAAVVTDEKSDAELLVAYAGC-------AQTSDQWILDTACT 292

Query: 491  FHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCN 312
            +HM P R+ F+ Y+ V  G+VLM ++   ++AGIG V +K   G   TL +VRH+P+L  
Sbjct: 293  YHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKR 352

Query: 311  NLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNS 135
            +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +    S + 
Sbjct: 353  SLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSL 412

Query: 134  VQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
              SD T+LWH RLGHMS  GL  L   G      +  + FC+ C
Sbjct: 413  SNSDATNLWHMRLGHMSEIGLAELSMRGLLDGQSIGKLKFCEHC 456


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  165 bits (418), Expect = 2e-38
 Identities = 112/345 (32%), Positives = 170/345 (49%), Gaps = 18/345 (5%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV--SRGSKQSSGEVMHVR 810
            ++LL ++P SY++ +  I Y RD++TL  V + L +KE   K+  S GS  S  E + VR
Sbjct: 87   LILLCSLPSSYANFRDTILYSRDTLTLQEVYDALHAKEKMKKMVPSEGSN-SQPESLVVR 145

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNC------------ 666
            GR Q + N  N+S                   + C  C   GH I +C            
Sbjct: 146  GRQQEK-NTDNKS-RDKSSSGYRGRSKSRGRYKSCKYCKRGGHDISDCWKLQNKEKHKGN 203

Query: 665  --PKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACT 492
              PKGKQ +         +A +A+ +    ++ + Y  C        +++ +WL+D+ CT
Sbjct: 204  YKPKGKQEEQ-------GKAAVATDNKPDAELLVAYAGC-------VQTSDEWLLDTGCT 249

Query: 491  FHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCN 312
            +HM P R+ F+ Y+ V  G+VLM +    K+AG+G + +K   G   TL +VRH+P L  
Sbjct: 250  YHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKR 309

Query: 311  NLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNS 135
            NLIS + L+  G     G G++K+ KG+LV+ KA+ K  +LY      +  + V N    
Sbjct: 310  NLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLY----HLQGTTIVGNVAAV 365

Query: 134  VQS-DKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
              S   +DLWH RLGHMS  GL  L K G      +  + FC+ C
Sbjct: 366  TDSLSNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHC 410


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  164 bits (416), Expect = 4e-38
 Identities = 98/337 (29%), Positives = 167/337 (49%), Gaps = 10/337 (2%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKY--GRDSITLDTVVNGLKSKELDLKVSRGSKQSSGEVMHVR 810
            I+LL A+P+++  +K  +KY  G+  +TLD V   + SKEL+L   + S +   E ++V+
Sbjct: 161  ILLLTALPKAFDQLKDTLKYSSGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVK 220

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKG-----KQNQ 645
             +++ +   + +               +      C+ CGE GH+  +CP       KQ+Q
Sbjct: 221  DKNENKGKGEQKG-------KGKGKKGKSKKKPGCWTCGEEGHFRSSCPNQNKPQFKQSQ 273

Query: 644  NFNNYQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNL 465
                  S  + N+A  +G        Y + ++++        +W++D+ C++HMT  R  
Sbjct: 274  VVKGESSGGKGNLAEAAG--------YYVSEALSSTEVHLEDEWILDTGCSYHMTYKREW 325

Query: 464  FSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALE 285
            F  + E   GSV M N+  S++ G+G + +K   G  + L NVR++PD+  NL+S    E
Sbjct: 326  FHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGLTIVLTNVRYIPDMDRNLLSLGTFE 385

Query: 284  DDGLEGRWGKGVMKILKGNLVIFKAEKKRNLYVCN---AESEHESYVHNSVNSVQSDKTD 114
              G +     G+++I  GN V+    +   LY+ N     SE  + V       ++D T 
Sbjct: 386  KAGYKFESEDGILRIKAGNQVLLTGRRYDTLYLLNWKPVASESLAVVK------RADDTV 439

Query: 113  LWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            LWH+RL HMS K +EIL + G   K K+S +  C+ C
Sbjct: 440  LWHQRLCHMSQKNMEILVRKGFLDKKKVSSLDVCEDC 476


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  164 bits (415), Expect = 5e-38
 Identities = 110/333 (33%), Positives = 168/333 (50%), Gaps = 7/333 (2%)
 Frame = -3

Query: 980  VLLNAIPESYSDVKSAIKYGR--DSITLDTVVNGLKSKELDLKV----SRGSKQSSGEVM 819
            +LL ++P+SY  +   I      D++  D V   +  +E   K     S  SKQ+    M
Sbjct: 142  LLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTM 201

Query: 818  HVRGRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNF 639
              RGRS  R  + +Q+                 NN KCY CG  GH  + C   K+N   
Sbjct: 202  -TRGRSTERGPSGSQNHGRSKSRR--------KNNIKCYGCGMKGHVKKECWNNKKNGEK 252

Query: 638  NNYQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFS 459
            N+  +  Q  +ASTS    D  ++Y    + +    +    W++DS  T+HMTP R+ F 
Sbjct: 253  NSEATTSQGCVASTSD---DGEILYSEAATSSEGERQLNDVWIMDSGATWHMTPHRDWFY 309

Query: 458  NYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDD 279
            +Y+ +  GSV M N+   +IAG+G + LK   G    ++ VRHV  L  NL+S   L+D 
Sbjct: 310  SYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDL 369

Query: 278  GLEGRWGKGVMKILKGNLVIFKAEK-KRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHK 102
            G +     G++K++KGNLV+ KAEK   NLY+   ++  E+    +  S Q + T +WH+
Sbjct: 370  GCKIHSESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAAS-QEETTMMWHQ 428

Query: 101  RLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            RLGHMS +GL++L +       K   +PFC+ C
Sbjct: 429  RLGHMSERGLKVLVERNLLHGLKTVNLPFCEHC 461


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  164 bits (414), Expect = 6e-38
 Identities = 110/333 (33%), Positives = 168/333 (50%), Gaps = 7/333 (2%)
 Frame = -3

Query: 980  VLLNAIPESYSDVKSAIKYGR--DSITLDTVVNGLKSKELDLKV----SRGSKQSSGEVM 819
            +LL ++P+SY  +   I      D++  D V   +  +E   K     S  SKQ+    M
Sbjct: 142  LLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTM 201

Query: 818  HVRGRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNF 639
              RGRS  R  + +Q+                  N KCY CG  GH  + C   K+N   
Sbjct: 202  -TRGRSTERGPSGSQNHGRSKSRR--------KKNIKCYGCGMKGHVKKECWNIKKNGEK 252

Query: 638  NNYQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFS 459
            N+  S  Q  +ASTS    D  ++Y    + +    +    W++DS  T+HMTP R+ F 
Sbjct: 253  NSEASTSQGCVASTSD---DGEILYSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFF 309

Query: 458  NYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCNNLISCAALEDD 279
            +Y+ +  GSV M N+   +IAG+G + LK   G    ++ VRHV  L  NL+S   L+D 
Sbjct: 310  SYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDL 369

Query: 278  GLEGRWGKGVMKILKGNLVIFKAEK-KRNLYVCNAESEHESYVHNSVNSVQSDKTDLWHK 102
            G +     G++K++KGNLV+ KAEK   NLY+   ++  E+    + +S Q + T +WH+
Sbjct: 370  GCKIHTESGILKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAASS-QEETTMMWHQ 428

Query: 101  RLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            RLGHMS +GL++L +       K   +PFC+ C
Sbjct: 429  RLGHMSERGLKVLAERNLLHGLKAVNLPFCEHC 461


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  164 bits (414), Expect = 6e-38
 Identities = 109/328 (33%), Positives = 162/328 (49%), Gaps = 3/328 (0%)
 Frame = -3

Query: 977  LLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKVSRGSKQSSGEVMHVRGRSQ 798
            LL+++P+SY      + YGR ++TL+ V   L SKE+        + S+GE +  R   +
Sbjct: 151  LLSSLPKSYEGFVDTMLYGRTTLTLEDVKASLSSKEIQKNCEL--ETSNGEGLMARTEKK 208

Query: 797  TRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNCPKGKQNQNFNNYQSND 618
                N+NQ               +    RKC+ C + GHYIR+C + K+ ++    + + 
Sbjct: 209  KDQKNKNQG---KGHGKNQETADKKKKKRKCFYCRKEGHYIRDCFEKKKKES---QEKSG 262

Query: 617  QANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACTFHMTPFRNLFSNYKEVVN 438
             A +AS  GS G     Y   D +   +  +  QW+IDS C+FH+ P + LF  Y+ V  
Sbjct: 263  DAAVASDDGSDG-----YQSADLLVASNSNTKGQWVIDSGCSFHLCPEKTLFYKYEAVDG 317

Query: 437  GSVLMANEKQSKIAGIGDVCLKFESGYAL--TLKNVRHVPDLCNNLISCAALEDDGLEGR 264
            G VLM N     I GI   C +      L  +L  VRH P L  NLIS   L+  G   +
Sbjct: 318  GRVLMGNNNVCNIVGIW-FCKRSRCLMELLRSLHEVRHAPRLKRNLISLGMLDSLGYFFK 376

Query: 263  WGKGVMKILKGNLVIFKAEKKRNLYVCNAESEHESYVHNSVNSV-QSDKTDLWHKRLGHM 87
               G +++ KG  ++ K   +  LYV    S     V   V++V + D+T LWH RLGHM
Sbjct: 377  SRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVP---VQEGVSAVSEEDRTKLWHLRLGHM 433

Query: 86   SAKGLEILHKNGCFGKDKLSCMPFCDSC 3
            S KGL+ L K G  G D++  + FC++C
Sbjct: 434  SIKGLQELSKQGLLGGDRIQQLEFCENC 461


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  163 bits (413), Expect = 8e-38
 Identities = 110/344 (31%), Positives = 170/344 (49%), Gaps = 17/344 (4%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV--SRGSKQSSGEVMHVR 810
            ++LL ++P SY++ +  I Y  D++ L  V + L +KE   K+  S GS  S  E + VR
Sbjct: 180  LILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSN-SQAEGLVVR 238

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNC------------ 666
            GR Q + N +NQS                   + C  C   GH I  C            
Sbjct: 239  GRQQEK-NTKNQS-RDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGK 296

Query: 665  --PKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACT 492
              PKGK+ +         +A + +   S  ++ + Y  C        +++ QW++D+A T
Sbjct: 297  YIPKGKKEEE-------GKAAVVTDEKSDTELLVAYAGC-------AQTSDQWILDTAWT 342

Query: 491  FHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCN 312
            +HM P R+ F+ Y+ +  G+VLM ++   ++AGIG V +K   GY  TL +VRH+P+L  
Sbjct: 343  YHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKR 402

Query: 311  NLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNS 135
            +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +    S + 
Sbjct: 403  SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 462

Query: 134  VQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
              SD T+LWH RLGHMS  GL  L K        +  + FC+ C
Sbjct: 463  SNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHC 506


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  163 bits (413), Expect = 8e-38
 Identities = 110/344 (31%), Positives = 170/344 (49%), Gaps = 17/344 (4%)
 Frame = -3

Query: 983  IVLLNAIPESYSDVKSAIKYGRDSITLDTVVNGLKSKELDLKV--SRGSKQSSGEVMHVR 810
            ++LL ++P SY++ +  I Y  D++ L  V + L +KE   K+  S GS  S  E + VR
Sbjct: 180  LILLCSLPSSYANFRDTILYSHDTLILKEVYDALHAKEKMKKMVPSEGSN-SQAEGLVVR 238

Query: 809  GRSQTRFNNQNQSFXXXXXXXXXXXXXRPNNNRKCYNCGEHGHYIRNC------------ 666
            GR Q + N +NQS                   + C  C   GH I  C            
Sbjct: 239  GRQQEK-NTKNQS-RDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGK 296

Query: 665  --PKGKQNQNFNNYQSNDQANMASTSGSTGDVFMVYDLCDSVNFVSPKSACQWLIDSACT 492
              PKGK+ +         +A + +   S  ++ + Y  C        +++ QW++D+A T
Sbjct: 297  YIPKGKKEEE-------GKAAVVTDEKSDTELLVAYAGC-------AQTSDQWILDTAWT 342

Query: 491  FHMTPFRNLFSNYKEVVNGSVLMANEKQSKIAGIGDVCLKFESGYALTLKNVRHVPDLCN 312
            +HM P R+ F+ Y+ +  G+VLM ++   ++AGIG V +K   GY  TL +VRH+P+L  
Sbjct: 343  YHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKR 402

Query: 311  NLISCAALEDDGLEGRWGKGVMKILKGNLVIFKAE-KKRNLYVCNAESEHESYVHNSVNS 135
            +LIS   L+  G +   G G++K+ KG+LV+ KA+ K  NLY     +   +    S + 
Sbjct: 403  SLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSL 462

Query: 134  VQSDKTDLWHKRLGHMSAKGLEILHKNGCFGKDKLSCMPFCDSC 3
              SD T+LWH RLGHMS  GL  L K        +  + FC+ C
Sbjct: 463  SNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHC 506