BLASTX nr result
ID: Rehmannia26_contig00005215
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00005215
(522 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006349515.1| PREDICTED: THO complex subunit 4-like [Solan... 69 6e-10
ref|XP_003538006.1| PREDICTED: THO complex subunit 4-like isofor... 66 5e-09
ref|XP_006592204.1| PREDICTED: THO complex subunit 4-like isofor... 65 7e-09
ref|XP_002531375.1| RNA and export factor binding protein, putat... 64 2e-08
emb|CAJ44457.1| ALY protein [Nicotiana benthamiana] 64 2e-08
ref|XP_006373955.1| hypothetical protein POPTR_0016s11470g [Popu... 63 4e-08
ref|XP_006373956.1| hypothetical protein POPTR_0016s11470g [Popu... 63 4e-08
ref|XP_002332459.1| predicted protein [Populus trichocarpa] 63 4e-08
emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera] 61 2e-07
ref|XP_004249625.1| PREDICTED: RNA and export factor-binding pro... 60 3e-07
emb|CAG26902.1| ALY protein [Nicotiana benthamiana] 60 3e-07
ref|XP_004294581.1| PREDICTED: THO complex subunit 4-A-like [Fra... 59 5e-07
gb|ESW04085.1| hypothetical protein PHAVU_011G066000g [Phaseolus... 58 1e-06
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro... 57 2e-06
gb|EOY34109.1| RNA-binding family protein [Theobroma cacao] 57 3e-06
ref|XP_003543506.1| PREDICTED: aly/REF export factor 2-like isof... 56 4e-06
gb|EXB52242.1| RNA and export factor-binding protein 2 [Morus no... 55 7e-06
>ref|XP_006349515.1| PREDICTED: THO complex subunit 4-like [Solanum tuberosum]
Length = 247
Score = 68.9 bits (167), Expect = 6e-10
Identities = 36/55 (65%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Frame = -1
Query: 513 RVEGRGGAIRRPQGGVRG--MRKDRVGGRGRGEKISAEDLDADLEKYLAGAKDTN 355
R + RGG RRP+GG RG MRKD GRGRGE +SAEDLDA+LEKY A A TN
Sbjct: 193 RSQQRGGGFRRPRGGARGGSMRKDGGRGRGRGENVSAEDLDAELEKYHAEAMQTN 247
>ref|XP_003538006.1| PREDICTED: THO complex subunit 4-like isoform X1 [Glycine max]
gi|571488643|ref|XP_006590992.1| PREDICTED: THO complex
subunit 4-like isoform X2 [Glycine max]
Length = 247
Score = 65.9 bits (159), Expect = 5e-09
Identities = 34/56 (60%), Positives = 41/56 (73%), Gaps = 5/56 (8%)
Frame = -1
Query: 507 EGRGGAIRRPQGGVRGMRKDRV-----GGRGRGEKISAEDLDADLEKYLAGAKDTN 355
+GRGGA+RRP G +G+R+DR GG GRGEK+SA+DLDADLEKY A A N
Sbjct: 192 QGRGGALRRPGGRGQGVRRDRGRGRGRGGAGRGEKVSADDLDADLEKYHAEAMQLN 247
>ref|XP_006592204.1| PREDICTED: THO complex subunit 4-like isoform X1 [Glycine max]
gi|571492362|ref|XP_006592205.1| PREDICTED: THO complex
subunit 4-like isoform X2 [Glycine max]
Length = 247
Score = 65.5 bits (158), Expect = 7e-09
Identities = 34/56 (60%), Positives = 41/56 (73%), Gaps = 5/56 (8%)
Frame = -1
Query: 507 EGRGGAIRRPQGGVRGMRKDRV-----GGRGRGEKISAEDLDADLEKYLAGAKDTN 355
+GRGGA+RRP G +G+R+DR GG GRGEK+SA+DLDADLEKY A A N
Sbjct: 192 QGRGGALRRPGGRGQGIRRDRGRGRGRGGGGRGEKVSADDLDADLEKYHAEAMQLN 247
>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
gi|223529035|gb|EEF31023.1| RNA and export factor
binding protein, putative [Ricinus communis]
Length = 247
Score = 64.3 bits (155), Expect = 2e-08
Identities = 33/54 (61%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Frame = -1
Query: 507 EGRGGAIRRPQGGV---RGMRKDRVGGRGRGEKISAEDLDADLEKYLAGAKDTN 355
+GRGG +RRP+G RG + R GRGRGEK+SAEDLDADLEKY + A TN
Sbjct: 194 QGRGGTMRRPRGASSDGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQTN 247
>emb|CAJ44457.1| ALY protein [Nicotiana benthamiana]
Length = 246
Score = 64.3 bits (155), Expect = 2e-08
Identities = 35/54 (64%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = -1
Query: 513 RVEGRGGAIRRPQGGVRG-MRKDRVGGRGRGEKISAEDLDADLEKYLAGAKDTN 355
R + RGG RRP G RG MRK+ GRGRGE ISAEDLDADLEKY + A +TN
Sbjct: 193 RSQQRGGGFRRPPRGGRGSMRKEGGRGRGRGENISAEDLDADLEKYHSEAMETN 246
>ref|XP_006373955.1| hypothetical protein POPTR_0016s11470g [Populus trichocarpa]
gi|550321275|gb|ERP51752.1| hypothetical protein
POPTR_0016s11470g [Populus trichocarpa]
Length = 244
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Frame = -1
Query: 507 EGRGGAIRRPQGGVRGMRKDRVG-GRGRGEKISAEDLDADLEKYLAGAKDTN 355
+GRGG RP+GG G+R+ G GRGRGEKISAEDLDADLEKY + A N
Sbjct: 193 QGRGGTTGRPRGGGHGVRRGGRGRGRGRGEKISAEDLDADLEKYHSEAMQEN 244
>ref|XP_006373956.1| hypothetical protein POPTR_0016s11470g [Populus trichocarpa]
gi|550321276|gb|ERP51753.1| hypothetical protein
POPTR_0016s11470g [Populus trichocarpa]
Length = 245
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Frame = -1
Query: 507 EGRGGAIRRPQGGVRGMRKDRVG-GRGRGEKISAEDLDADLEKYLAGAKDTN 355
+GRGG RP+GG G+R+ G GRGRGEKISAEDLDADLEKY + A N
Sbjct: 194 QGRGGTTGRPRGGGHGVRRGGRGRGRGRGEKISAEDLDADLEKYHSEAMQEN 245
>ref|XP_002332459.1| predicted protein [Populus trichocarpa]
Length = 164
Score = 63.2 bits (152), Expect = 4e-08
Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Frame = -1
Query: 507 EGRGGAIRRPQGGVRGMRKDRVG-GRGRGEKISAEDLDADLEKYLAGAKDTN 355
+GRGG RP+GG G+R+ G GRGRGEKISAEDLDADLEKY + A N
Sbjct: 113 QGRGGTTGRPRGGGHGVRRGGRGRGRGRGEKISAEDLDADLEKYHSEAMQEN 164
>emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera]
Length = 281
Score = 60.8 bits (146), Expect = 2e-07
Identities = 32/53 (60%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Frame = -1
Query: 507 EGRGGAIRRPQGGV--RGMRKDRVGGRGRGEKISAEDLDADLEKYLAGAKDTN 355
+GRGG+ RP+GG RG + R GRGRGEK+SAEDLDADLEKY + A N
Sbjct: 229 QGRGGSQGRPRGGSGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQIN 281
>ref|XP_004249625.1| PREDICTED: RNA and export factor-binding protein 2-like isoform 2
[Solanum lycopersicum]
Length = 239
Score = 60.1 bits (144), Expect = 3e-07
Identities = 34/55 (61%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Frame = -1
Query: 513 RVEGRGGAIRRPQGGV-RG-MRKDRVGGRGRGEKISAEDLDADLEKYLAGAKDTN 355
R + RGG RP+GG RG MRKD GRGRG+ +SAEDLDA+LEKY A A TN
Sbjct: 185 RSQQRGGGFSRPRGGGGRGSMRKDGGRGRGRGQNVSAEDLDAELEKYHAEAMQTN 239
>emb|CAG26902.1| ALY protein [Nicotiana benthamiana]
Length = 249
Score = 60.1 bits (144), Expect = 3e-07
Identities = 34/54 (62%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = -1
Query: 513 RVEGRGGAIRRPQGGVRG-MRKDRVGGRGRGEKISAEDLDADLEKYLAGAKDTN 355
R + RGG RRP G RG MRK+ GRGR E I+AEDLDADLEKY A A TN
Sbjct: 196 RSQQRGGGFRRPPRGGRGSMRKEGGRGRGRVENITAEDLDADLEKYHAEAMQTN 249
>ref|XP_004294581.1| PREDICTED: THO complex subunit 4-A-like [Fragaria vesca subsp.
vesca]
Length = 250
Score = 59.3 bits (142), Expect = 5e-07
Identities = 34/53 (64%), Positives = 40/53 (75%), Gaps = 5/53 (9%)
Frame = -1
Query: 507 EGRGGAIRRPQGGV-RGMRKDRVGGRGRG----EKISAEDLDADLEKYLAGAK 364
+GRGGA RP+GG RG R+ R GGRGRG EK+SAEDLDA+LEKY A A+
Sbjct: 195 QGRGGAFNRPRGGAGRGPRRGR-GGRGRGGRTGEKVSAEDLDAELEKYHATAE 246
>gb|ESW04085.1| hypothetical protein PHAVU_011G066000g [Phaseolus vulgaris]
Length = 234
Score = 58.2 bits (139), Expect = 1e-06
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 5/56 (8%)
Frame = -1
Query: 507 EGRGGAIRRPQGGVRGMRKDRVGGRGRG-----EKISAEDLDADLEKYLAGAKDTN 355
+GR GA+R+P G +GM++DR GRG G +K+SA+DLDADLEKY A A N
Sbjct: 179 QGRNGALRKPGGRGQGMQRDRGQGRGHGGGRRDDKLSADDLDADLEKYHAEAMQLN 234
>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
gi|297746115|emb|CBI16171.3| unnamed protein product
[Vitis vinifera]
Length = 243
Score = 57.4 bits (137), Expect = 2e-06
Identities = 31/53 (58%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Frame = -1
Query: 507 EGRGGAIRRPQGGV--RGMRKDRVGGRGRGEKISAEDLDADLEKYLAGAKDTN 355
+GR G+ RP+GG RG + R GRGRGEK+SAEDLDADLEKY + A N
Sbjct: 191 QGRVGSQGRPRGGSGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQIN 243
>gb|EOY34109.1| RNA-binding family protein [Theobroma cacao]
Length = 241
Score = 56.6 bits (135), Expect = 3e-06
Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Frame = -1
Query: 504 GRGGAI--RRPQGGVRGMRKDRVGGRGRGEKISAEDLDADLEKYLAGAKDTN 355
GRGG +R GG RG + R G+GRGEK+SAEDLDA+LEKY + A TN
Sbjct: 190 GRGGGFGKQRGGGGGRGFGRGRGRGKGRGEKVSAEDLDAELEKYHSEAMQTN 241
>ref|XP_003543506.1| PREDICTED: aly/REF export factor 2-like isoform X1 [Glycine max]
Length = 243
Score = 56.2 bits (134), Expect = 4e-06
Identities = 32/55 (58%), Positives = 38/55 (69%), Gaps = 4/55 (7%)
Frame = -1
Query: 507 EGRGGAIRRPQGGVRGMRKDRVG-GRGRG---EKISAEDLDADLEKYLAGAKDTN 355
+GR G++ RP+GG RG + G GRGRG EK+SAEDLDADLEKY A A N
Sbjct: 189 QGRSGSLGRPRGGSRGRGSIQRGRGRGRGGRDEKVSAEDLDADLEKYHAEAMQLN 243
>gb|EXB52242.1| RNA and export factor-binding protein 2 [Morus notabilis]
Length = 248
Score = 55.5 bits (132), Expect = 7e-06
Identities = 34/57 (59%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Frame = -1
Query: 507 EGRGG-AIRRPQGGVRGMRKDRVG-----GRGRGEKISAEDLDADLEKYLAGAKDTN 355
+GRGG A RP+GG G R R G GRG GEKISA+DLDADLEKY A A N
Sbjct: 192 QGRGGGAFGRPRGGGGGGRGPRRGRGRGQGRGTGEKISADDLDADLEKYHAEAMQEN 248