BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00004843
         (1592 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACN32036.1| unknown [Zea mays]                                     197   1e-47
gb|ACL54615.1| unknown [Zea mays]                                     195   4e-47
emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]   167   1e-45
emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]   182   3e-43
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   182   3e-43
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]   182   4e-43
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   181   8e-43
emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]   179   4e-42
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   163   4e-41
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...   163   4e-41
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]   174   1e-40
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]   173   2e-40
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ...   172   4e-40
gb|AAU90262.1| integrase core domain containing protein [Oryza s...   170   2e-39
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   169   3e-39
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   169   4e-39
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]                167   2e-38
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   165   4e-38
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc...   165   6e-38
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   164   8e-38

>gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score =  197 bits (500), Expect = 1e-47
 Identities = 123/384 (32%), Positives = 182/384 (47%), Gaps = 7/384 (1%)
 Frame = +2

Query: 203  ADQPIQPQSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIV-----GK 367
            +  P    SQ+++ KLN  NYL+W  QV   ++   L G++ G    P + +      G 
Sbjct: 15   SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 368  SETQKSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAA 547
                 ++NP +  W  QDQ                  V + T+R  W  LE  +AS + A
Sbjct: 75   GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRA 134

Query: 548  KIMQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSV 727
            +IMQ R+QL T++KG+ +  +Y  +VK   D LAA G ++E+ E I Y+L GL ++Y+S+
Sbjct: 135  RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 728  LVTLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYP 907
            + ++T+R + YT++D ++ LLSFETR E   H+ V   S   SVN A + P+R GG    
Sbjct: 195  VTSITTRPDTYTISDVYAHLLSFETRQEY--HTAVGQIS---SVNNANRVPSRGGGAFGQ 249

Query: 908  N--SGRGRNANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDL 1081
            N   GRGR     P                          CQIC   NH   +C++R D 
Sbjct: 250  NGRGGRGRGGRSQP-----GRGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQ 304

Query: 1082 NFVPPSSNTGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSV 1261
             +   S+                        EY  D  WY DSGAT+H+T DL  L T  
Sbjct: 305  AYQAEST---------------VKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRE 349

Query: 1262 EYQGNEKVQIGNGTGSNNRNGITQ 1333
             Y G +K+Q+ NG GS++    +Q
Sbjct: 350  RYTGGDKIQVANGAGSSHEASSSQ 373


>gb|ACL54615.1| unknown [Zea mays]
          Length = 376

 Score =  195 bits (496), Expect = 4e-47
 Identities = 122/384 (31%), Positives = 181/384 (47%), Gaps = 7/384 (1%)
 Frame = +2

Query: 203  ADQPIQPQSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIV-----GK 367
            +  P    SQ+++ KLN  NYL+W  QV   ++   L G++ G    P + +      G 
Sbjct: 15   SSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVDPAEGS 74

Query: 368  SETQKSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAA 547
                 ++NP +  W  QDQ                  V + T+R  W  LE  +AS +  
Sbjct: 75   GGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYASSSRV 134

Query: 548  KIMQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSV 727
            +IMQ R+QL T++KG+ +  +Y  +VK   D LAA G ++E+ E I Y+L GL ++Y+S+
Sbjct: 135  RIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPADYDSL 194

Query: 728  LVTLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYP 907
            + ++T+R + YT++D ++ LLSFETR E   H+ V   S   SVN A + P+R GG    
Sbjct: 195  VTSITTRPDTYTISDVYAHLLSFETRQEY--HTAVGQIS---SVNNANRVPSRGGGAFGQ 249

Query: 908  N--SGRGRNANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDL 1081
            N   GRGR     P                          CQIC   NH   +C++R D 
Sbjct: 250  NGRGGRGRGGRSQP-----GRGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQ 304

Query: 1082 NFVPPSSNTGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSV 1261
             +   S+                        EY  D  WY DSGAT+H+T DL  L T  
Sbjct: 305  AYQAEST---------------VKQAAAATHEYAVDPNWYMDSGATDHITSDLERLTTRE 349

Query: 1262 EYQGNEKVQIGNGTGSNNRNGITQ 1333
             Y G +K+Q+ NG GS++    +Q
Sbjct: 350  RYTGGDKIQVANGAGSSHEASSSQ 373


>emb|CAN60188.1| hypothetical protein VITISV_002117 [Vitis vinifera]
          Length = 1079

 Score =  167 bits (423), Expect(2) = 1e-45
 Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 9/383 (2%)
 Frame = +2

Query: 176  KMQTTLTAAADQPIQPQS--QLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPE 349
            K Q TL +++     P S     + KL   N+LIW+ Q+++A++G++L  ++ G      
Sbjct: 3    KSQQTLASSSSSHFVPISFNHSTSVKLENHNFLIWRKQIFSAIRGHNLQHFVIGVHDPSL 62

Query: 350  EFIVGKSETQKSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNF 529
            +F   +  +Q  VN  +  W +QDQ                  +  +++ ++WK LE+ F
Sbjct: 63   KFRSSEDRSQGIVNQDFLDWEQQDQLLVSWLLSSMFEGVLSRCINCESAFQIWKTLEVYF 122

Query: 530  ASQNAAKIMQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLG 709
            ASQ   KI QY+  LQ  KK + SM +YL +++   DLLA  G  +   + I  +  GL 
Sbjct: 123  ASQTRIKISQYKTLLQNTKKESLSMNEYLLKIRGFVDLLALVGVNLSVKDHIDAITDGLL 182

Query: 710  SEYNSVLVTLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPN-R 886
            SEY++  +T+ SR E Y++ +  S+LL+ E R+E  +  L+ +      ++    +PN  
Sbjct: 183  SEYDTFFLTINSRTEDYSIEEIESLLLAQEARIEKHNKRLLKL--LLVILHKIQFHPNFG 240

Query: 887  RGGYNYPNSGRGRNANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCF 1066
            RG +    S RGR+  QG                           CQ+C    H+ D+C+
Sbjct: 241  RGNF----SPRGRDGFQGRGGFNNGGWRSWNTWNNNATANAEKPVCQVCMKIGHSADRCY 296

Query: 1067 YRCDLNFVPPSSN--TGSYXXXXXXXXXXXXXXXXXXXEYT-QDMC---WYPDSGATNHV 1228
            YR D +F  P +   T S+                     T +++C   WYPDSGA+NHV
Sbjct: 297  YRYDPSFQGPHTPGFTPSFQKSPQTQIQGGNKPNMQVLMATPENICDTNWYPDSGASNHV 356

Query: 1229 TYDLANLNTSVEYQGNEKVQIGN 1297
            T +  NL     Y GNE+V++GN
Sbjct: 357  TTNANNLVEHTPYYGNEQVRVGN 379



 Score = 44.7 bits (104), Expect(2) = 1e-45
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
 Frame = +3

Query: 1287 KLEMEQDQTTGMVLLKGTLRNGLYSFNL----LKSDTTSSPSIKLT--------ESRCPA 1430
            ++ +  DQ + +V+L+G L+ GLY+F+     LK    S  S+  +         + C  
Sbjct: 374  QVRVGNDQVSKIVVLEGKLKGGLYAFDSSQIQLKKSAPSQVSLSQSVTSHQSGLRANCQV 433

Query: 1431 SSPFTLSATLKNKCNLVTWHNRLGHASFDIVKKALQSCNI 1550
            S   +   +      +  WH+RLGH SF IV+  +  C +
Sbjct: 434  SIHVSDLQSQNGSSTVGIWHDRLGHPSFKIVQTVMSLCKL 473


>emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]
          Length = 2220

 Score =  182 bits (463), Expect = 3e-43
 Identities = 117/372 (31%), Positives = 172/372 (46%), Gaps = 3/372 (0%)
 Frame = +2

Query: 194  TAAADQPIQPQSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKSE 373
            T A+    Q  +  +  KL+  NY++WK Q+   V     + ++ G    P+     K  
Sbjct: 864  TMASHPSYQMLNHTLLVKLDRTNYILWKSQIDNVVFANGFEDFIDGFSICPD-----KEL 918

Query: 374  TQKSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKI 553
            +   +NPA+  W RQD+                  +G  +S   W  LE  F+S + A+I
Sbjct: 919  SSGLINPAFVAWRRQDRTILSWLYSSLTPAIMAQIIGHNSSHSAWNALEKTFSSSSRARI 978

Query: 554  MQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLV 733
            MQ RL+LQ+ KKG+ SM DY+ +VK   D LAA G  + E +Q+M +L GLGS+YN+V+ 
Sbjct: 979  MQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIGEPVSEQDQVMNLLGGLGSDYNAVVT 1038

Query: 734  TLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYPNS 913
             +  R ++ ++   HSMLL+FE RLE    S +   S   S N A+ + NR GG  Y N 
Sbjct: 1039 AINIRDDKISIEAVHSMLLAFEHRLEQ--QSSIKQFSP-ISANYASSSNNRGGGRRY-NG 1094

Query: 914  GRGRNAN---QGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLN 1084
            GRG+N                                  CQ+C    HT   C++R D++
Sbjct: 1095 GRGQNHTPNISNYTYRGCGRGGRYGQNGRHNSNSSEKPQCQLCGKFGHTVQICYHRFDIS 1154

Query: 1085 FVPPSSNTGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVE 1264
            +    S+  S                        D  WY DSGA++H+T  + NL +S  
Sbjct: 1155 Y---QSSQSSNTSPSNAGNPNSIPAMVASSNNLADDTWYLDSGASHHLTQSVGNLTSSSP 1211

Query: 1265 YQGNEKVQIGNG 1300
            Y G +KV IGNG
Sbjct: 1212 YTGIDKVTIGNG 1223


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  182 bits (463), Expect = 3e-43
 Identities = 115/390 (29%), Positives = 181/390 (46%), Gaps = 33/390 (8%)
 Frame = +2

Query: 236  ITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKSETQKSVNPAYNLWVR 415
            ++ KL+  N+L+ + Q+   ++G+ L  +L+    +P EF+    ETQ  VNP +  W +
Sbjct: 19   VSSKLDNHNFLVXRKQILTTLRGHKLQHFLSETSVLPSEFLSSDDETQNHVNPKFQDWEQ 78

Query: 416  QDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQTLKKGN 595
            Q Q                  V   TS +VWK LE+ FA+Q  AK+ Q++ QL   KKG+
Sbjct: 79   QXQLIMSXLLASITDALLTRMVNCDTSAQVWKTLELYFATQVRAKVTQFKTQLHNTKKGD 138

Query: 596  QSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLEQYTLNDA 775
             S+ DYL ++++  DLLA  GHKI   + I  +  GL  +Y + ++++ SRL+ YT+ + 
Sbjct: 139  LSISDYLLKIRNVVDLLALVGHKISVKDHIBAIFEGLPQDYETFIISVNSRLDPYTVEEI 198

Query: 776  HSMLLSFETRLE-----------SIDHSLVNM--DSSHFSVNMATQNPNRRGGY------ 898
             ++LL+ E+R+E           S+ H +      S HF+   +T+N N R         
Sbjct: 199  EALLLAQESRIEKNIKIADFSTPSLAHLITTNRNGSPHFNYRASTRNSNFRPPTHSGNGM 258

Query: 899  -----NYPNSGRGRNANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKC 1063
                 N+   GRGR+                               CQ+C    H   +C
Sbjct: 259  QHFRGNFTQQGRGRHGRGS-------------------WKGNNKPQCQLCGRIGHVVMQC 299

Query: 1064 FYRCDLNFVPPSSNTGS---------YXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGA 1216
            +YR D +F  PS   G+         +                   E  QD  WYPDSGA
Sbjct: 300  YYRFDQSFTGPSQLQGNRPQGNMAHLHQQLSEXFFPGTPSVKPTTAEIIQDNNWYPDSGA 359

Query: 1217 TNHVTYDLANLNTSVEYQGNEKVQIGNGTG 1306
            T+H+T +L NL T  ++  +++V +GNG G
Sbjct: 360  THHLTPNLNNLLTKSQFPSSDEVFVGNGKG 389


>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score =  182 bits (462), Expect = 4e-43
 Identities = 114/353 (32%), Positives = 164/353 (46%), Gaps = 1/353 (0%)
 Frame = +2

Query: 245  KLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKSETQKSVNPAYNLWVRQDQ 424
            KL+  NY++W+ Q+   +     + ++ G    PE     K      +NPA+  W RQD+
Sbjct: 36   KLDRTNYILWRSQIDNVIFANGFEDFIDGTSXCPE-----KELRPXEINPAFVAWRRQDR 90

Query: 425  XXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQTLKKGNQSM 604
                              +G  +S   W  LE  F+S + A+IMQ RL+ Q+ KKG+ SM
Sbjct: 91   TILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLRLEFQSTKKGSMSM 150

Query: 605  RDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLEQYTLNDAHSM 784
             DY+ +VK   D LAA G  + E +QIM +L GLGS+YN+V+  +  R ++ +L   HSM
Sbjct: 151  IDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHSM 210

Query: 785  LLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYPNSGRGRNANQ-GPXXXXXX 961
            LL+FE RLE    S+  + +   S N A+ + NR GG  Y N GRG N            
Sbjct: 211  LLAFEQRLEQ-QGSIEQLPA--MSANYASSSNNRGGGRKY-NGGRGPNFMMTNSNFRGRG 266

Query: 962  XXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLNFVPPSSNTGSYXXXXXXXX 1141
                                CQ+C    HT   C++R D+ F    +NT           
Sbjct: 267  RGGRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNNTTGVSNSGNSNS 326

Query: 1142 XXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVEYQGNEKVQIGNG 1300
                           D  WY DSGA++H+T ++ANL  +  Y G +KV IGNG
Sbjct: 327  MPAMVASSNNLA---DDNWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNG 376


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  181 bits (459), Expect = 8e-43
 Identities = 116/378 (30%), Positives = 172/378 (45%), Gaps = 9/378 (2%)
 Frame = +2

Query: 194  TAAADQPIQPQSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKSE 373
            T A+    Q  +  +  KL+  NY++W+ Q+   +     + ++ G    PE     K  
Sbjct: 22   TMASIPSYQMLNHTLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSICPE-----KDL 76

Query: 374  TQKSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKI 553
            +   +NPA+  W RQD+                  +G  TS   W  LE  F+S + A+I
Sbjct: 77   SPGVMNPAFVAWRRQDRTILSWIYSSLTPGIMAQIIGHNTSHSAWNALESIFSSSSRARI 136

Query: 554  MQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLV 733
            MQ RL+LQ+ KKG+ SM DY+ ++K   D LAA G  + E +Q+M +L GLGS+YN+V+ 
Sbjct: 137  MQLRLELQSTKKGSMSMIDYIMKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVT 196

Query: 734  TLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYPNS 913
             +  R ++ +L   HSMLL+FE RLE              S N A+ + NR GG  + N 
Sbjct: 197  AINIRDDKISLEAIHSMLLAFEHRLEQ------QSSIEQMSANYASSSNNRGGGRKF-NG 249

Query: 914  GRGRNA---NQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLN 1084
            GRG+     N                             CQ+C    HT   C++R D++
Sbjct: 250  GRGQGYSPNNNNYTYRGRGRGGRNGQGGRQNSSPSEKPQCQLCGKFGHTAQICYHRFDIS 309

Query: 1085 F------VPPSSNTGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLAN 1246
            F      +  S N G+                        D  WY DSGA++H+T +L N
Sbjct: 310  FQGGQTTISHSLNNGNQNNIPAMVASASNNPA--------DESWYLDSGASHHLTQNLGN 361

Query: 1247 LNTSVEYQGNEKVQIGNG 1300
            L ++  Y G +KV IGNG
Sbjct: 362  LTSTSPYTGTDKVTIGNG 379



 Score = 60.8 bits (146), Expect = 2e-06
 Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
 Frame = +3

Query: 1302 QDQTTGMVLLKGTLRNGLYSFNLLKSDTTSSPSIKLTESRCPASSPFT-LSATLKNKCNL 1478
            +D  T MVL +G L NGLY F +  +       +K   S   AS+  +  S+T++NK  L
Sbjct: 438  KDLHTKMVLAQGKLENGLYKFPVFSN-------LKPYSSINNASAFHSQFSSTVENKAEL 490

Query: 1479 VTWHNRLGHASFDIVKKALQSCNI 1550
              WHNRLGHASFDIV K + +CN+
Sbjct: 491  --WHNRLGHASFDIVSKVMNTCNV 512


>emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]
          Length = 1282

 Score =  179 bits (453), Expect = 4e-42
 Identities = 115/371 (30%), Positives = 170/371 (45%), Gaps = 3/371 (0%)
 Frame = +2

Query: 194  TAAADQPIQPQSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKSE 373
            T A+    Q  +  +  KL+  NY++WK Q+   V     + ++ G    P+     K  
Sbjct: 19   TMASHXSYQMLNHTLPVKLDRTNYILWKSQIDNVVFANGFEDFIDGSSICPD-----KEL 73

Query: 374  TQKSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKI 553
                +NPA+  W RQD+                  +G  +    W  LE  F+S + A+I
Sbjct: 74   XSGLINPAFVAWRRQDRTILSWLYSSLTPAXMAQIIGHNSXHSAWNALEKTFSSSSRARI 133

Query: 554  MQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLV 733
            MQ RL+LQ+ KKG+ SM DY+ +VK   D LAA G  + E +Q+M +L GLGS+YN+V+ 
Sbjct: 134  MQLRLELQSTKKGSXSMIDYIMKVKGAADSLAAIGEPVSEQDQVMNLLDGLGSDYNAVVT 193

Query: 734  TLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYPNS 913
             +  R ++ ++   HSMLL FE RLE    S +   S   S N A+ + +R GG  Y N 
Sbjct: 194  AINIRDDKISIEAVHSMLLVFEHRLEQ--QSSIEQFSP-ISANYASSSNSRGGGRRY-NG 249

Query: 914  GRGRNANQGPXXXXXXXXXXXXXXXXXXXXXXXXXX---CQICNYSNHTTDKCFYRCDLN 1084
            GRG+N                                  CQ+C    +T   C++R D++
Sbjct: 250  GRGQNHTPNTSNYTYRGSGRGGRYGQNERHNSNSSEKPQCQLCGKFGYTVQICYHRFDIS 309

Query: 1085 FVPPSSNTGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVE 1264
            +    S+  S                     Y  D  WY DSGA++H+T  + NL +S  
Sbjct: 310  Y---QSSQSSNTSPSNASNPNSIPAMVASSNYLADDTWYLDSGASHHLTQSVGNLTSSSP 366

Query: 1265 YQGNEKVQIGN 1297
            Y G +KV IGN
Sbjct: 367  YTGTDKVTIGN 377


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  163 bits (412), Expect(2) = 4e-41
 Identities = 103/350 (29%), Positives = 168/350 (48%), Gaps = 4/350 (1%)
 Frame = +2

Query: 275  KMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKSETQKSVNPAYNLWVRQDQXXXXXXXXXX 454
            K QV AA++G  L+GYLTG  KMP+E  V  ++ +KS NPA+  W  +DQ          
Sbjct: 5    KAQVRAAMRGARLEGYLTGATKMPDEETVD-NKGKKSPNPAFEEWEAKDQQILSYLLSSI 63

Query: 455  XXXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQTLKKGNQSMRDYLNRVKSC 634
                      +KT+ E W  +E  FASQ  A+ +  RL L T KKG+ ++ +Y  ++K  
Sbjct: 64   SREVQIQVTSAKTAAEAWHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMKGY 123

Query: 635  CDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLEQYTLNDAHSMLLSFETRLES 814
             D +AAAG  +++ E + Y+L+GL  E+  ++  L +R++  +L D +S LL+FET+L+ 
Sbjct: 124  GDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRVDPISLEDLYSQLLNFETKLDL 183

Query: 815  IDHSLVNMDSSHFSVNMATQNP--NRRGGYNYPNSGRGRNANQG--PXXXXXXXXXXXXX 982
            +       +    S NMA +    N+RGG        GR +++G                
Sbjct: 184  MRGG---GEQHQGSANMAGRGGRGNQRGGSGGRGQRGGRGSSRGGRASWSGGRQSNQGGY 240

Query: 983  XXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLNFVPPSSNTGSYXXXXXXXXXXXXXXX 1162
                         CQ+C    HT  +C++R + +FVP     G+                
Sbjct: 241  IRRSNNSSDERPVCQVCFKKGHTAARCWHRFEEDFVPDEKLAGA---------------- 284

Query: 1163 XXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVEYQGNEKVQIGNGTGSN 1312
                 Y  D  WY D+GAT+H+T +L  L+   +Y G +++   +G+ ++
Sbjct: 285  -ATNSYHVDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTASGSDNS 333



 Score = 33.9 bits (76), Expect(2) = 4e-41
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +3

Query: 1302 QDQTTGMVLLKGTLRNGLYSFNLLKSDTTSSPSIKLTESRCPASSPFTLSATLKN----- 1466
            +D+ T  +LLKG    GLY                          P   ++T+KN     
Sbjct: 346  KDKDTKNILLKGRCHKGLY--------------------------PIPATSTIKNALGAV 379

Query: 1467 KCNLVTWHNRLGHASFDIVKK 1529
            K ++  WHNRLGH S  IV++
Sbjct: 380  KPSMSRWHNRLGHPSSFIVRQ 400


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 969

 Score =  163 bits (412), Expect(2) = 4e-41
 Identities = 103/350 (29%), Positives = 168/350 (48%), Gaps = 4/350 (1%)
 Frame = +2

Query: 275  KMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKSETQKSVNPAYNLWVRQDQXXXXXXXXXX 454
            K QV AA++G  L+GYLTG  KMP+E  V  ++ +KS NPA+  W  +DQ          
Sbjct: 5    KAQVRAAMRGARLEGYLTGATKMPDEETVD-NKGKKSPNPAFEEWEAKDQQILSYLLSSI 63

Query: 455  XXXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQTLKKGNQSMRDYLNRVKSC 634
                      +KT+ E W  +E  FASQ  A+ +  RL L T KKG+ ++ +Y  ++K  
Sbjct: 64   SREVQIQVTSAKTAAEAWHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMKGY 123

Query: 635  CDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLEQYTLNDAHSMLLSFETRLES 814
             D +AAAG  +++ E + Y+L+GL  E+  ++  L +R++  +L D +S LL+FET+L+ 
Sbjct: 124  GDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRVDPISLEDLYSQLLNFETKLDL 183

Query: 815  IDHSLVNMDSSHFSVNMATQNP--NRRGGYNYPNSGRGRNANQG--PXXXXXXXXXXXXX 982
            +       +    S NMA +    N+RGG        GR +++G                
Sbjct: 184  MRGG---GEQHQGSANMAGRGGRGNQRGGSGGRGQRGGRGSSRGGRASWSGGRQSNQGGY 240

Query: 983  XXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLNFVPPSSNTGSYXXXXXXXXXXXXXXX 1162
                         CQ+C    HT  +C++R + +FVP     G+                
Sbjct: 241  IRRSNNSSDERPVCQVCFKKGHTAARCWHRFEEDFVPDEKLAGA---------------- 284

Query: 1163 XXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVEYQGNEKVQIGNGTGSN 1312
                 Y  D  WY D+GAT+H+T +L  L+   +Y G +++   +G+ ++
Sbjct: 285  -ATNSYHVDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTASGSDNS 333



 Score = 33.9 bits (76), Expect(2) = 4e-41
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
 Frame = +3

Query: 1302 QDQTTGMVLLKGTLRNGLYSFNLLKSDTTSSPSIKLTESRCPASSPFTLSATLKN----- 1466
            +D+ T  +LLKG    GLY                          P   ++T+KN     
Sbjct: 346  KDKDTKNILLKGRCHKGLY--------------------------PIPATSTIKNALGAV 379

Query: 1467 KCNLVTWHNRLGHASFDIVKK 1529
            K ++  WHNRLGH S  IV++
Sbjct: 380  KPSMSRWHNRLGHPSSFIVRQ 400


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score =  174 bits (441), Expect = 1e-40
 Identities = 116/353 (32%), Positives = 166/353 (47%), Gaps = 1/353 (0%)
 Frame = +2

Query: 245  KLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKSETQKSVNPAYNLWVRQDQ 424
            KL+  NY++W+ Q+   +     + ++ G    PE     K      +NPA+    RQD+
Sbjct: 36   KLDRTNYILWRSQIDNVIFANGFEDFIDGTSVCPE-----KELRPGEINPAFVAXRRQDR 90

Query: 425  XXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQTLKKGNQSM 604
                              +G  +S   W  LE  F+S + A+IMQ  L+ Q+ KKG+ SM
Sbjct: 91   TILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLXLEFQSTKKGSMSM 150

Query: 605  RDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLEQYTLNDAHSM 784
             DY+ +VK   D LAA G  + E +QIM +L GLGS+YN+V+  +  R ++ +L   HSM
Sbjct: 151  IDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHSM 210

Query: 785  LLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYPNSGRGRNANQ-GPXXXXXX 961
            LL+FE RLE    S+  + +   S N A+ + NR GG  Y N GRG N            
Sbjct: 211  LLAFEQRLEQ-QGSIEQLPA--MSANYASXSNNRGGGRKY-NGGRGPNFMMTNSNFRGRG 266

Query: 962  XXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLNFVPPSSNTGSYXXXXXXXX 1141
                                CQ+C    HT   C++R D+ F    +NT           
Sbjct: 267  RGXRYGQSGRQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNNTTGVSNSGNSNX 326

Query: 1142 XXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVEYQGNEKVQIGNG 1300
                           D  WY DSGA++H+T ++ANL  +  Y G +KV IGNG
Sbjct: 327  MPAMVAXSNNXA---DDNWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNG 376


>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
          Length = 1242

 Score =  173 bits (439), Expect = 2e-40
 Identities = 124/412 (30%), Positives = 177/412 (42%), Gaps = 31/412 (7%)
 Frame = +2

Query: 185  TTLTAAADQPIQPQSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIVG 364
            TT   +    I P SQLIT +L + N+L+WK Q+  AV+GY L+G+L G E++P + +  
Sbjct: 229  TTTDESLRMVISPLSQLITMRLEDDNFLMWKYQIENAVRGYGLEGFLFGTEQVPPKMVTD 288

Query: 365  KSETQKSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNA 544
            K       NP +  + RQD                   VG  ++ EVW  +  NF SQ++
Sbjct: 289  KIGVLVP-NPKFRDYQRQDHLLISWLLSSIGSAFLPQVVGCSSAFEVWNTISQNFNSQSS 347

Query: 545  AKIMQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNS 724
            AK+M Y+ Q+Q LKK   +MRDYL ++K+ CDLLA AGHKI + + I+ ++ GLG EY  
Sbjct: 348  AKVMFYKSQMQMLKKDGLTMRDYLTKMKNYCDLLATAGHKISDTDHILAIMQGLGDEYEX 407

Query: 725  VLVTLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRR----- 889
            V+  + S+    +L    S L++ E R+         + S+  S N  +Q  NR      
Sbjct: 408  VIAVIXSKKSSPSLQYVTSTLIAHEGRIAH------KISSNDLSXNYTSQYSNRGXSSSW 461

Query: 890  GGYNYPNSGRGRNANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFY 1069
                YP+SG       G                           CQ CN   H   +CFY
Sbjct: 462  NSNGYPSSGFQNRNQFGGNXXTRGSFVXNRGRGRGRAQGGIKPQCQXCNKFGHXVHRCFY 521

Query: 1070 RCDLNF---VPPSSNTGSYXXXXXXXXXXXXXXXXXXXEYT------------------- 1183
            R D NF   +P +  T                        T                   
Sbjct: 522  RYDPNFHGNMPXNGXTPGXLGSXARNGASGSISSAGNVNXTEYDAQEBQDYSEMEAMVAT 581

Query: 1184 ----QDMCWYPDSGATNHVTYDLANLNTSVEYQGNEKVQIGNGTGSNNRNGI 1327
                Q+ CW+PDSGATN       NL+  +      K   G  +G +  N +
Sbjct: 582  XEDLQNCCWFPDSGATN-----XGNLHKGLYQFNLSKKLFGKASGLSLSNDL 628


>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
          Length = 646

 Score =  172 bits (436), Expect = 4e-40
 Identities = 120/423 (28%), Positives = 198/423 (46%), Gaps = 29/423 (6%)
 Frame = +2

Query: 125  HSSIFLSPFLKKKNL----TYKMQTTLTAAADQPIQPQSQLITCKLNEINYLIWKMQVWA 292
            H +I ++P ++ +NL    +     T T   +  +    Q +T KL+  N+LIW+ Q+  
Sbjct: 4    HINIEVTPLMETQNLGSEHSANTMATQTTGINSNLPTFGQTLTIKLDRNNFLIWRNQLLN 63

Query: 293  AVKGYSLDGYLTGDEKMPEEFIV---GKSETQKSV--NPAYNLWVRQDQXXXXXXXXXXX 457
             V     +  L G    P ++I      S T  SV  NP Y LW RQ++           
Sbjct: 64   IVVANGYEDILEGTRSCPYQWIAVTDTASTTHGSVILNPEYVLWQRQNRLVMSWIYSSLT 123

Query: 458  XXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQTLKKGNQSMRDYLNRVKSCC 637
                   +   ++ E+W  L  ++AS + A+IM+ RLQLQT +KG  S+ DY+ R++  C
Sbjct: 124  EQMMTQIMAYNSACEIWTALRESYASASRARIMELRLQLQTTRKGGLSVMDYMLRIQHIC 183

Query: 638  DLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLEQYTLNDAHSMLLSFETRLE-- 811
            D L A G  +   +Q+M VL+GLGSEYN ++ ++TSRL+  ++    S L ++E RLE  
Sbjct: 184  DHLRAIGESVSIDDQVMAVLAGLGSEYNPIVASITSRLDSISVQALQSYLETYEKRLEIQ 243

Query: 812  -SID-HSLVNMDSSHFSVNMATQNPNRRG------------GYNYPNSG----RGRNANQ 937
             S++ H  +  +++ ++ N   + P ++              +N+ NS     RG ++N+
Sbjct: 244  NSVEQHIPLQANAAMYNSNRGKRKPYQQNFHHSQTPVTATHNFNHRNSSQGGFRGGHSNK 303

Query: 938  GPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLNFVPPSSNTGSY 1117
            G                           CQIC    H   +C++R D  F P +S++  +
Sbjct: 304  G------------------RANPGSRPQCQICCKIGHVATECWHRFDNQFQPKASHSNQF 345

Query: 1118 XXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVEYQGNEKVQIGN 1297
                                   +  W+ D+GAT+HVT DLANL+    + G++KV +GN
Sbjct: 346  SSSAQDPQALMAAPGLLG-----ETPWFLDTGATHHVTSDLANLSLHNPFSGDDKVIVGN 400

Query: 1298 GTG 1306
            G G
Sbjct: 401  GKG 403


>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
            Group] gi|108710062|gb|ABF97857.1| retrotransposon
            protein, putative, Ty1-copia subclass, expressed [Oryza
            sativa Japonica Group]
          Length = 1021

 Score =  170 bits (430), Expect = 2e-39
 Identities = 102/361 (28%), Positives = 165/361 (45%), Gaps = 2/361 (0%)
 Frame = +2

Query: 230  QLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKS--ETQKSVNPAYN 403
            Q +  KL   N+L+WK Q+   ++G  ++GYLTG  + P   I  K    T K+  PA+ 
Sbjct: 15   QAVAEKLTRTNFLLWKAQILPVIRGARMEGYLTGATQAPLAVIDAKDGEATVKASKPAFE 74

Query: 404  LWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQTL 583
            +W+  DQ                  +  +++ +VWK +    +SQ+ A+ +  RL L T 
Sbjct: 75   MWITADQQVLGFLLSTLSKEILTQVISMESAAQVWKAITEMLSSQSRARALNTRLALATT 134

Query: 584  KKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLEQYT 763
             KG+ S+ DY++++K   D +A AG  +++ E I YVL+GL  +Y  V+ +L  + E  +
Sbjct: 135  LKGDLSVSDYISKMKVLADEMAFAGKPLDDEELISYVLAGLDDDYEPVVSSLVGKSEVVS 194

Query: 764  LNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYPNSGRGRNANQGP 943
            L + +S LLSF++R + + H+  +  S   SVN A +   + GGY   N G     N   
Sbjct: 195  LAECYSQLLSFKSR-QKLRHAAAHQAS---SVNAARRGGGKGGGYTPFNRGGRSGGNNNG 250

Query: 944  XXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLNFVPPSSNTGSYXX 1123
                                      C +C  + H    C+YR D NFVP +    +   
Sbjct: 251  RRSNNGGGRGGRGNNNGDRGGKPHPVCHLCGKTGHVVADCWYRYDENFVPENKIAAA--- 307

Query: 1124 XXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVEYQGNEKVQIGNGT 1303
                              Y  D  WY D+GAT+H+T +L  L T  +Y G +++   +G 
Sbjct: 308  ----------------ASYGVDTNWYVDTGATDHITGELDKLTTREKYNGKDQIYTASGA 351

Query: 1304 G 1306
            G
Sbjct: 352  G 352


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  169 bits (428), Expect = 3e-39
 Identities = 105/362 (29%), Positives = 163/362 (45%), Gaps = 3/362 (0%)
 Frame = +2

Query: 230  QLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEEFIVGKSETQKSV---NPAY 400
            Q ++ KL + N+ +WK Q+ A ++G  L+G+LTGD++ P   I+ + E +K V   NP Y
Sbjct: 16   QPVSEKLGKSNHAVWKAQILATIRGARLEGHLTGDDQPPAP-ILRRKEGEKEVVVSNPEY 74

Query: 401  NLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQT 580
              WV  DQ                     +T+   W  ++  F S   A+ +  RL L T
Sbjct: 75   EEWVATDQQVLAYLLSSMTKDLLVQVATCRTAASAWSMIQGMFGSMTRARTINTRLSLST 134

Query: 581  LKKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLEQY 760
            L+KG+ ++  Y+ ++++  D L A G  +++ E I Y+ +GL  E+  V+ T+  R +  
Sbjct: 135  LQKGDMNITTYVGKMRALADDLMAVGKPVDDDELIGYIFAGLDDEFEPVISTIVGRPDPV 194

Query: 761  TLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYPNSGRGRNANQG 940
            T+ + ++ L+SFE RL    H      SS  S + +   P R G  +  +S RGR A   
Sbjct: 195  TIGETYAQLISFEQRLA---HRRSGDQSSVNSASRSRGQPQRGGSRSGGDSNRGRGAPSN 251

Query: 941  PXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLNFVPPSSNTGSYX 1120
                                       CQ+C    HT   C+YR D NFVP     G+  
Sbjct: 252  GANRGRGRGNPSGGRANVGGGTDNRPKCQLCYKRGHTVCDCWYRYDENFVPDERFAGT-- 309

Query: 1121 XXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVEYQGNEKVQIGNG 1300
                               Y  D  WY D+GAT+HVT +L  L    +Y GN++V   +G
Sbjct: 310  ----------------AVSYGVDTNWYLDTGATDHVTGELDKLTVRDKYHGNDQVHTASG 353

Query: 1301 TG 1306
             G
Sbjct: 354  AG 355


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  169 bits (427), Expect = 4e-39
 Identities = 109/379 (28%), Positives = 170/379 (44%), Gaps = 3/379 (0%)
 Frame = +2

Query: 179  MQTTLTAAADQPIQPQSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMP--EE 352
            M ++ + AA  P Q     I+ KL + N+ +WK+QV AAV+G  L G+LTG  K P  E 
Sbjct: 87   MASSSSTAATNPFQGHP--ISEKLGKANHALWKVQVSAAVRGARLQGHLTGATKRPPAEI 144

Query: 353  FIVGKSETQKSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFA 532
             +     T+K  NPA+  W   DQ                      T+ EVW  +E  ++
Sbjct: 145  AVTKDGATKKEPNPAHEDWEATDQQVLGYLLSSLTREVLMQVATCDTAAEVWSAIEQMYS 204

Query: 533  SQNAAKIMQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHK-IEEPEQIMYVLSGLG 709
            +   A+ +  R  L   KKGN S  +Y  ++KS  D +A AG + I+E E I Y+++GLG
Sbjct: 205  THTRARAINTRFALTNTKKGNMSTPEYFAKMKSLGDEMATAGGRPIDEEELIQYIITGLG 264

Query: 710  SEYNSVLVTLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRR 889
              Y+ V+  + +R+E  +++D +S +L+FE R        +   +   +VN+A +     
Sbjct: 265  EGYSEVVSAVCARVEPISVSDLYSQVLNFEAR------QAIYRGAQEVTVNVANRGGFSH 318

Query: 890  GGYNYPNSGRGRNANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFY 1069
            GG    N G+G +   G                           CQ+C    HT   C+Y
Sbjct: 319  GGRGNSNGGQGGSRGGGGGGHGRGNGGGGRGRGRTPGGVDKRPICQVCFKRGHTAADCWY 378

Query: 1070 RCDLNFVPPSSNTGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANL 1249
            R D ++VP + +  +                     Y  D  WY D+GAT+HVT +L  L
Sbjct: 379  RYDEDYVPDAKHVAA----------------AAVNSYGVDTNWYIDTGATDHVTGELDKL 422

Query: 1250 NTSVEYQGNEKVQIGNGTG 1306
                +Y G E++   +G G
Sbjct: 423  TMKEKYNGGEQIHTASGAG 441


>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
          Length = 1825

 Score =  167 bits (422), Expect = 2e-38
 Identities = 109/383 (28%), Positives = 176/383 (45%), Gaps = 4/383 (1%)
 Frame = +2

Query: 170  TYKMQTTLTAAADQPIQPQSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPE 349
            T    T+ +AA+  P+      +T KL++ N+ +W  QV  A++G  L+G++ G    P 
Sbjct: 136  TQMASTSNSAASSNPLIGVQ--VTEKLSKANHGLWVAQVLTAIRGARLEGHINGKNPAPP 193

Query: 350  EFIVGKSETQ--KSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEM 523
              I    + +  K+ NP Y+ W   DQ                     KT+ E WK L+ 
Sbjct: 194  AEITKTVDGKEVKTSNPNYDEWFAADQQILGFLFSSLTRETLLQVAAVKTAAEAWKTLDD 253

Query: 524  NFASQNAAKIMQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSG 703
             F S+  A+ +  RL L TL+KGN S+ +Y+ ++K+  D +AAAG  +++ E I Y+L+G
Sbjct: 254  MFTSRTRARSLNVRLALTTLQKGNSSISEYIGKMKTLADEVAAAGKPLDDEELIAYILNG 313

Query: 704  LGSEYNSVLVTLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPN 883
            L  +++SV+ T+  R+E  T+ + +S LLSFE RL         M  +  + NMA +   
Sbjct: 314  LDEDFDSVVSTIVGRVEPVTVAEVYSQLLSFENRLA--------MRQAQATANMANRGGR 365

Query: 884  RRGGY--NYPNSGRGRNANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTD 1057
              GG      N GRGR A +G                           CQ+C    H   
Sbjct: 366  GGGGSRGGGANPGRGRGATRG----RGAAPGRGRGNNQQQRSYDNRPLCQVCYKRGHVAA 421

Query: 1058 KCFYRCDLNFVPPSSNTGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYD 1237
             C++R D +FVP      +                     + +D  WY D+GAT+H+T +
Sbjct: 422  DCWHRFDEDFVPDDKLVAA-----------------AIHTHARDSNWYVDTGATDHITSE 464

Query: 1238 LANLNTSVEYQGNEKVQIGNGTG 1306
            L  L     Y+G++++   +G+G
Sbjct: 465  LEKLTARDVYKGHDQIHTASGSG 487


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  165 bits (418), Expect = 4e-38
 Identities = 105/365 (28%), Positives = 165/365 (45%), Gaps = 10/365 (2%)
 Frame = +2

Query: 236  ITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEE-FIVGKSETQKSV-NPAYNLW 409
            +T KL++ NYLIWK+QV A ++G  LD YLTG  K P    I+ K+E +  V NPA + W
Sbjct: 18   VTEKLSKGNYLIWKVQVLAVIRGARLDSYLTGATKKPSATIIIKKNEKEVEVSNPAVDEW 77

Query: 410  VRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQTLKK 589
            +  DQ                      ++  +W  +E  F+S   A+ +  ++ L   KK
Sbjct: 78   IANDQQVLGYLLTTMSRDVLSQVATCSSAASLWSTIEGMFSSATRARSINTKIALTNTKK 137

Query: 590  GNQSMRDYLNRVKSCCDLLAAAGHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLEQYTLN 769
            G+  + +Y+++++   D LA +G  ++E + I Y+++GL  ++  ++ +L S+ E  +L 
Sbjct: 138  GDLGIAEYVSKMRVLADELATSGKPVDEEDLISYIIAGLDEDFEPIISSLVSKSEHVSLG 197

Query: 770  DAHSMLLSFETRLESIDHSLVNM--------DSSHFSVNMATQNPNRRGGYNYPNSGRGR 925
            +A+S LLSFE R++       N+        +      N   Q   R  G N    GRG 
Sbjct: 198  EAYSQLLSFEQRMKMRQEHSANLANRGRGRGNPGRGRNNKQPQQQQRGHGGNSRGRGRGN 257

Query: 926  NANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLNFVPPSSN 1105
            N+NQ                            CQ+C    HT   C+YR D +FVP    
Sbjct: 258  NSNQ----------------RQGGNGVDYRPKCQLCYKRGHTVIDCWYRYDEDFVPDEKY 301

Query: 1106 TGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVEYQGNEKV 1285
             G+                     Y  D  WY D+G T+HVT +L  L    +Y+G ++V
Sbjct: 302  AGT------------------TASYGVDSNWYVDTGTTDHVTGELEKLTIRDKYKGQDQV 343

Query: 1286 QIGNG 1300
            Q  NG
Sbjct: 344  QTANG 348


>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1145

 Score =  165 bits (417), Expect = 6e-38
 Identities = 104/375 (27%), Positives = 169/375 (45%), Gaps = 9/375 (2%)
 Frame = +2

Query: 224  QSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMPEE--FIVGKSETQKSVNPA 397
            Q   ++ KL + NY +WK+Q+ AAV+G  L G+LTG  + PE    +    ++ K  NPA
Sbjct: 16   QGHTVSEKLGKNNYALWKVQICAAVRGARLQGHLTGASEKPEAEVTVTADGKSTKKANPA 75

Query: 398  YNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFASQNAAKIMQYRLQLQ 577
            +  W   DQ                     +T+ EVW  +E  ++    A+ M  R  L 
Sbjct: 76   FEDWEALDQQVLGYLLSSLSRDVLMQVAACETAAEVWATIERMYSMHTRARTMNTRFALT 135

Query: 578  TLKKGNQSMRDYLNRVKSCCDLLAAA-GHKIEEPEQIMYVLSGLGSEYNSVLVTLTSRLE 754
              KKGN ++ ++  ++K+  D +AA+ G  ++E E I ++++GLG  Y+ V+  + +R E
Sbjct: 136  NTKKGNMTLPEFFGKMKALGDEMAASTGRPVDEEEMIQHIIAGLGEGYSKVISVVCARPE 195

Query: 755  QYTLNDAHSMLLSFETRL---ESIDHSLVNMDSSHFSVNMATQNPNRRGGYNYPNSG--- 916
              T++D +S +++FE R+         +VN+ +     N    N   RGGY    SG   
Sbjct: 196  PMTVSDLYSQVVNFEGRMALYRGTQEGVVNLANRSSGGN----NGGGRGGYTNRGSGGAP 251

Query: 917  RGRNANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCFYRCDLNFVPP 1096
            RGR    G                           CQ+C    HT   C+YR D ++VP 
Sbjct: 252  RGRGRGNG----------GGRGRGRAPGGPDRKPTCQVCFKRGHTATDCWYRYDEDYVPD 301

Query: 1097 SSNTGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLANLNTSVEYQGN 1276
              +  +                     Y  D  WY D+GAT+H+T +L  L T  +Y GN
Sbjct: 302  DKHVAA---------------ATASSSYGVDTNWYIDTGATDHITGELEKLTTKDKYNGN 346

Query: 1277 EKVQIGNGTGSNNRN 1321
            E++   +G  S++ +
Sbjct: 347  EQIHTASGADSSDES 361


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  164 bits (416), Expect = 8e-38
 Identities = 109/380 (28%), Positives = 170/380 (44%), Gaps = 4/380 (1%)
 Frame = +2

Query: 179  MQTTLTAAADQPIQPQSQLITCKLNEINYLIWKMQVWAAVKGYSLDGYLTGDEKMP--EE 352
            M ++ + AA  P Q     I+ KL + N+ +WK+QV AAV+G  L G+LTG  K P  E 
Sbjct: 1    MASSSSTAATNPFQGHP--ISEKLGKANHALWKVQVSAAVRGARLQGHLTGATKRPPAEI 58

Query: 353  FIVGKSETQKSVNPAYNLWVRQDQXXXXXXXXXXXXXXXXXTVGSKTSREVWKCLEMNFA 532
             +     T+K  NPA+  W   DQ                      T+ EVW  +E  ++
Sbjct: 59   AVTKDGATKKEPNPAHEDWEATDQQVLGYLLSSLTREVLMQVATCDTAAEVWSAIEQMYS 118

Query: 533  SQNAAKIMQYRLQLQTLKKGNQSMRDYLNRVKSCCDLLAAAGHK-IEEPEQIMYVLSGLG 709
            +   A+ +  R  L   KKGN S  +Y  ++KS  D +A AG + I+E E I Y+++GLG
Sbjct: 119  THTRARAINTRFALTNTKKGNMSTPEYFAKMKSLGDEMATAGGRPIDEEELIQYIITGLG 178

Query: 710  SEYNSVLVTLTSRLEQYTLNDAHSMLLSFETRLESIDHSLVNMDSSHFSVNMATQNPNRR 889
              Y+ V+  + +R+E  +++D +S +L+FE R        +   +   +VN+A +     
Sbjct: 179  EGYSEVVSAVCARVEPISVSDLYSQVLNFEAR------QAIYRGAQEVTVNVANRGGFSH 232

Query: 890  GGYNYPNSGRGRN-ANQGPXXXXXXXXXXXXXXXXXXXXXXXXXXCQICNYSNHTTDKCF 1066
            GG    N G+G +    G                           CQ+C    HT   C+
Sbjct: 233  GGRGNSNGGQGGSRGGGGGGGHGRGNGGGGHGRGRTPGGVDKRPICQVCFKRGHTAADCW 292

Query: 1067 YRCDLNFVPPSSNTGSYXXXXXXXXXXXXXXXXXXXEYTQDMCWYPDSGATNHVTYDLAN 1246
            YR D ++VP + +  +                     Y  D  WY D+GAT+HVT +L  
Sbjct: 293  YRYDEDYVPDAKHVAA----------------AAVNSYGVDTNWYIDTGATDHVTGELDK 336

Query: 1247 LNTSVEYQGNEKVQIGNGTG 1306
            L    +Y G E++   +G G
Sbjct: 337  LTMKEKYNGGEQIHTASGAG 356