BLASTX nr result
ID: Rehmannia26_contig00004040
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00004040
(362 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 65 7e-09
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 65 9e-09
emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera] 61 1e-07
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 61 2e-07
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera] 59 7e-07
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar... 59 9e-07
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 58 1e-06
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 58 1e-06
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 57 2e-06
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana] 57 3e-06
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 57 3e-06
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 57 3e-06
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 57 3e-06
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 57 3e-06
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 57 3e-06
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 56 4e-06
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 56 6e-06
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 56 6e-06
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 56 6e-06
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group] 55 1e-05
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 65.5 bits (158), Expect = 7e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Frame = +3
Query: 174 NYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNALH 353
+Y L RDR +R ++ P R+ +T++ SV E I + EPKTYQEA+ S + +W+ A+
Sbjct: 732 SYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQ 791
Query: 354 EEM 362
EEM
Sbjct: 792 EEM 794
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 65.1 bits (157), Expect = 9e-09
Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Frame = +3
Query: 174 NYQLARDRTRR-NIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNAL 350
+Y LARD RR NIR PSRF+D +Y + E ++ EPK+Y+EALKS ++W NA+
Sbjct: 693 DYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQWENAM 752
Query: 351 HEEM 362
EEM
Sbjct: 753 KEEM 756
>emb|CAN69096.1| hypothetical protein VITISV_025437 [Vitis vinifera]
Length = 992
Score = 61.2 bits (147), Expect = 1e-07
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +3
Query: 174 NYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNALH 353
+Y LARDR +R ++ P R+ +T++ SV E I + EPKT QEA+ S+ + +W+ +
Sbjct: 900 SYSLARDRQKRQVKPPKRYGQAEMTTFALSVAEEIVDMEPKTNQEAINSDEANQWVKVIQ 959
Query: 354 EEM 362
E+M
Sbjct: 960 EKM 962
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/63 (46%), Positives = 40/63 (63%)
Frame = +3
Query: 174 NYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNALH 353
NYQLA+DR RR I P+RF + ++ V ES+ EP++YQEA + + +W NA H
Sbjct: 478 NYQLAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQDKEWLKWKNATH 537
Query: 354 EEM 362
EEM
Sbjct: 538 EEM 540
>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
Length = 939
Score = 58.9 bits (141), Expect = 7e-07
Identities = 27/62 (43%), Positives = 37/62 (59%)
Frame = +3
Query: 174 NYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNALH 353
NYQL RD RR+IR P RF + +Y S+ E + EPK Y EA+ + S +W+ A+
Sbjct: 419 NYQLTRDGARRSIRPPQRFGYNDMVAYSLSIGEELSCAEPKNYLEAISCKDSPKWMTAMQ 478
Query: 354 EE 359
EE
Sbjct: 479 EE 480
>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 348
Score = 58.5 bits (140), Expect = 9e-07
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +3
Query: 174 NYQLARDRTRR-NIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNAL 350
+Y LAR+R RR NIR PSRF D +Y + E ++ EPK+Y+EA+K ++W +A+
Sbjct: 165 DYLLARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIEEPKSYEEAMKRSKRKQWESAM 224
Query: 351 HEEM 362
EEM
Sbjct: 225 KEEM 228
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 58.2 bits (139), Expect = 1e-06
Identities = 27/62 (43%), Positives = 41/62 (66%)
Frame = +3
Query: 177 YQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNALHE 356
Y+LARDR RRNI P+RF + ++ V E+ EP++YQEA++S+ ++W A H+
Sbjct: 801 YKLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHD 860
Query: 357 EM 362
EM
Sbjct: 861 EM 862
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 58.2 bits (139), Expect = 1e-06
Identities = 26/62 (41%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Frame = +3
Query: 183 LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNALHE 356
+A+DR +RNI+ P R+ ++ ++ +Y SV E I+ N EP TY EA+ S+ W+ A+H+
Sbjct: 985 IAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 1044
Query: 357 EM 362
EM
Sbjct: 1045 EM 1046
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 57.4 bits (137), Expect = 2e-06
Identities = 26/63 (41%), Positives = 37/63 (58%)
Frame = +3
Query: 174 NYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNALH 353
NYQLARDR RR +R P R+ L +Y + + EP + EA++S H +WL A+
Sbjct: 775 NYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQ 834
Query: 354 EEM 362
+EM
Sbjct: 835 DEM 837
>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
Length = 494
Score = 57.0 bits (136), Expect = 3e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +3
Query: 174 NYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNALH 353
NYQLARDR RR I P+RF + ++ E++ EP++YQEA ++ ++W A H
Sbjct: 32 NYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSNKEWKKWKLATH 91
Query: 354 EEM 362
EEM
Sbjct: 92 EEM 94
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 57.0 bits (136), Expect = 3e-06
Identities = 25/64 (39%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Frame = +3
Query: 177 YQLARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNAL 350
+ +A+D+ +RN R P R+ ++ ++ +Y SV E I+ N EP TY EA+ S+ W+ A+
Sbjct: 611 HSIAKDKPKRNTRPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAM 670
Query: 351 HEEM 362
H+EM
Sbjct: 671 HDEM 674
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 56.6 bits (135), Expect = 3e-06
Identities = 27/63 (42%), Positives = 38/63 (60%)
Frame = +3
Query: 174 NYQLARDRTRRNIRQPSRFDDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNALH 353
NYQLARDR RR I P+RF + ++ E++ EP++YQEA + ++W A H
Sbjct: 807 NYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATH 866
Query: 354 EEM 362
EEM
Sbjct: 867 EEM 869
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 56.6 bits (135), Expect = 3e-06
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Frame = +3
Query: 183 LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNALHE 356
+A+D+ +RNI+ P R+ ++ ++ +Y SV E I+ N EP TY EA+ S+ W+ A+H+
Sbjct: 813 IAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 872
Query: 357 EM 362
EM
Sbjct: 873 EM 874
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 56.6 bits (135), Expect = 3e-06
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 174 NYQLARDRTRRNIRQPSRF--DDFHLTSYVFSVFESIDNCEPKTYQEALKSEHSQEWLNA 347
NY LARDR RR IR P RF +D L + ++ E + EP+TY+EA++S ++W A
Sbjct: 782 NYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQA 841
Query: 348 LHEEM 362
EEM
Sbjct: 842 TIEEM 846
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 56.6 bits (135), Expect = 3e-06
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Frame = +3
Query: 183 LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNALHE 356
+A+D+ +RNI+ P R+ ++ ++ +Y SV E I+ N EP TY EA+ S+ W+ A+H+
Sbjct: 813 IAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHD 872
Query: 357 EM 362
EM
Sbjct: 873 EM 874
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 56.2 bits (134), Expect = 4e-06
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Frame = +3
Query: 183 LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNALHE 356
+A+D+ +RNI+ P R+ ++ ++ +Y SV E I+ N EP TY EA+ S+ W+ A+H+
Sbjct: 657 IAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDGCNRWITAMHD 716
Query: 357 EM 362
EM
Sbjct: 717 EM 718
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 55.8 bits (133), Expect = 6e-06
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +3
Query: 177 YQLARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNAL 350
+ +A+D+ +RNI+ P R+ ++ ++ +Y SV E I+ N EP TY +A+ S+ W+ A+
Sbjct: 737 HSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAM 796
Query: 351 HEEM 362
H+EM
Sbjct: 797 HDEM 800
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 55.8 bits (133), Expect = 6e-06
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Frame = +3
Query: 177 YQLARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNAL 350
+ +A+D+ +RNI+ P R+ ++ ++ +Y SV E I+ N EP TY +A+ S+ W+ A+
Sbjct: 774 HSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIVSDDCNRWITAM 833
Query: 351 HEEM 362
H+EM
Sbjct: 834 HDEM 837
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 55.8 bits (133), Expect = 6e-06
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Frame = +3
Query: 183 LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNALHE 356
+A+D+ +RNI+ P R+ ++ + +Y SV E I+ N EP TY EA+ S+ W+ A+H+
Sbjct: 750 IAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHD 809
Query: 357 EM 362
EM
Sbjct: 810 EM 811
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
Length = 1007
Score = 55.1 bits (131), Expect = 1e-05
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Frame = +3
Query: 183 LARDRTRRNIRQPSRF-DDFHLTSYVFSVFESID-NCEPKTYQEALKSEHSQEWLNALHE 356
+A+D+ +RN + P R+ ++ ++ +Y SV E I+ N EP TY EA+ S+ W+ A+H+
Sbjct: 560 IAKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYSEAIVSDDCNRWITAMHD 619
Query: 357 EM 362
EM
Sbjct: 620 EM 621