BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00004039
         (1042 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   290   5e-76
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   283   8e-74
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   273   6e-71
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   273   1e-70
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   269   1e-69
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        269   1e-69
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     266   8e-69
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   266   8e-69
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     266   1e-68
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]         263   6e-68
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     263   8e-68
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   259   1e-66
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   259   1e-66
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   259   2e-66
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           258   2e-66
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...   256   8e-66
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   255   2e-65
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   253   7e-65
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    253   9e-65
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     251   3e-64

>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  290 bits (743), Expect = 5e-76
 Identities = 159/346 (45%), Positives = 213/346 (61%), Gaps = 5/346 (1%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A +LINRSPS  L+ K P+  ++GK  D+ +LKVFGC A+VH K DKLEPR+ KC+FLGY
Sbjct: 586  AVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGY 645

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNK-VEQLLGLSH 359
            P+GVKGY+LW+  +   K I SRDV FNE D            S+  P K VE L  L  
Sbjct: 646  PKGVKGYKLWIETQGKGKCIISRDVTFNEQDM-----------SKQTPAKDVEGLDQLQF 694

Query: 360  IDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEE-LGNYQLAR 536
              E E L                      +   +    +++V    NEP + L +Y L R
Sbjct: 695  EVEHETLQ-----------------PEKSKETSSKTAQEEIVHERQNEPTQGLESYNLVR 737

Query: 537  DRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSL 716
            DR +R ++ P R+   +M ++  SV E I + EPKTYQ+A+ S  + +W+ A+ EEM+SL
Sbjct: 738  DRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEMDSL 797

Query: 717  HVNNTWILVPKPENCSLVDCKWLFKVKNE---NDSVRYKARLVAKGFTQKEGIDYTEIFA 887
              N TW LV KP++  +V  KW+FK K     N++ RYKARLVAKGF+QKEG+DY EIF+
Sbjct: 798  RKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFS 857

Query: 888  PVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPE 1025
            PVVK +++R++LA  A  + EL QLDVKTAFLHG+L E IYM+ PE
Sbjct: 858  PVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQPPE 903


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  283 bits (724), Expect = 8e-74
 Identities = 157/355 (44%), Positives = 213/355 (60%), Gaps = 9/355 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            AAYL+NRSPS  +  K P+ V+SGK  ++S LK+FGC A+ H    KLEPR+ KC+FLGY
Sbjct: 727  AAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGY 786

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLSHI 362
              GVKGYRLW   +   K I SRDV F+ES                   +   L G S  
Sbjct: 787  ATGVKGYRLWCTEDRTPKFIISRDVTFDESAM------------FGQRKEFGDLAGTSKT 834

Query: 363  DETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDR 542
            D   N  V                  M   VD+      ++D ND++        +A  R
Sbjct: 835  DLGANQKVEFEVDAP-----------MENGVDDTSEEQPVIDQNDSQ-------SIAAHR 876

Query: 543  TRRNIRQPTRFDDF------QMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEE 704
             RR IR+P R+ D         +++  +V E I   EP++Y++A++S+ S++WL++M +E
Sbjct: 877  PRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRSYKEAMESKDSKKWLSSMDDE 936

Query: 705  MNSLHVNNTWILVPKPENCSLVDCKWLFKVKN---ENDSVRYKARLVAKGFTQKEGIDYT 875
            M SL  N TW LVP PE    VDCKWLFK+K+    ++  +YK+RLVAKGF+QKEGIDY 
Sbjct: 937  MASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGIDYN 996

Query: 876  EIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDN 1040
            E+F+PVVK  ++R++LA+ + FN EL QLDVKTAFLHG+L E+IYM+QPEGFVD+
Sbjct: 997  EVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDS 1051


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  273 bits (699), Expect = 6e-71
 Identities = 148/353 (41%), Positives = 213/353 (60%), Gaps = 9/353 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 835  ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 894

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
            P GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 895  PSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 950

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E E++ +                     N D   + D    +    P+      +
Sbjct: 951  SGHAPEKEDVAI---------------------NQDEPVIEDSNSSIVQQSPKR----SI 985

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHEE 704
            A+DR +RNI+ P R+ ++  +++Y  SV E I+ N EP TY +A+ S+    W+ AMH+E
Sbjct: 986  AKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDE 1045

Query: 705  MNSLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYT 875
            M SL  N+TW LV  P+    + CKW+FK K   + +D  RYKARL+AKG++Q  GID+ 
Sbjct: 1046 MESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFN 1105

Query: 876  EIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            ++F+PVVK +++R +L++ A  ++EL+Q+DVKTAFLHG+L E IYM QP+GFV
Sbjct: 1106 DVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPKGFV 1158


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  273 bits (697), Expect = 1e-70
 Identities = 155/356 (43%), Positives = 224/356 (62%), Gaps = 12/356 (3%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINR+P+  +  K PE V++G + D S+L+ FGC+A+VH   DK  PR+ K VF+GY
Sbjct: 517  AVYLINRTPNSFIGFKLPEEVWTGTKPDLSHLRRFGCSAYVHVTQDKTSPRAVKGVFMGY 576

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDF---PCLSATMPLPESEPAPNKVEQL--- 344
            P G+KGYR+WL  E   K  TSR+V+FNE++       SA     E+E    K+++    
Sbjct: 577  PCGIKGYRVWLPKEG--KCTTSRNVVFNETELYKDTLSSADERKEEAEKEYKKLKKARKR 634

Query: 345  LGLSH--IDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELG 518
            +  SH  +                            EN++ +EM++++V  ++NE + L 
Sbjct: 635  VSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSENLEESEMNEEVVG-SENE-QSLD 692

Query: 519  NYQLARDRTRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAM 695
            +Y LARD  RR NIR P+RF+D   ++Y  +  E ++  EPK+Y++ALKS   ++W NAM
Sbjct: 693  DYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPKSYEEALKSSKRKQWENAM 752

Query: 696  HEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGI 866
             EEM+S   ++TW L+ KPE   L+ CKW+FK+K     V   RYKARLVAKGF+Q+EGI
Sbjct: 753  KEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEGI 812

Query: 867  DYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            DY E+F+ VVK  ++R+ML+L    ++EL+Q+DVKTAFLHG+L E+I M QPEGF+
Sbjct: 813  DYNEVFSLVVKHVSIRLMLSLMVNMDYELEQMDVKTAFLHGNLEERILMSQPEGFI 868


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  269 bits (688), Expect = 1e-69
 Identities = 146/347 (42%), Positives = 209/347 (60%), Gaps = 4/347 (1%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINR P   ++ K P  ++SGK  D+SNLK FGC A+ H    KLEPR+KK VF+GY
Sbjct: 606  ACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGY 665

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLSHI 362
             +GVKG+R+W   E   + I SR+V+F+ES    L  T+  P +      +++ +    I
Sbjct: 666  GDGVKGFRIWSPAEK--RVIMSRNVVFDESP---LLRTIVKPTTTSETGSLDKQVEFQVI 720

Query: 363  DETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDR 542
                +L                     PE  D     +   D+ ++ P ++ +  +A+DR
Sbjct: 721  QNESDLKE-------------------PEEEDQEPQTE--TDIPESMPSDI-HQSIAQDR 758

Query: 543  TRR-NIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLH 719
             RR  +R PTR+    M+ Y   V E +D  EP TY++A+ S  S++W  AM +EM SLH
Sbjct: 759  PRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLH 818

Query: 720  VNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYTEIFAP 890
             N TW LV +P    ++ CKW+FK K   +  + V+YKAR+VA+GF Q+EG+DY EIF+P
Sbjct: 819  KNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSP 878

Query: 891  VVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGF 1031
            VV+ T++R++LA+ A  N EL+QLDVKTAFLHG+L E+IYM QP+GF
Sbjct: 879  VVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQPDGF 925


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  269 bits (688), Expect = 1e-69
 Identities = 147/348 (42%), Positives = 212/348 (60%), Gaps = 5/348 (1%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A+YL+NRSPS  +  K PE +++GK  ++ NL+VFGC A++H    KLE R+ K VF+GY
Sbjct: 618  ASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGKLEARALKGVFVGY 677

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLP-ESEPAPNKVEQLLGLSH 359
            P+GVKGY++W + +   K I SRDV+F+ES     SA      +  PA NK         
Sbjct: 678  PDGVKGYKIWCKDQG--KCIVSRDVVFHESVLLKESAEHDAGLQDNPAANKRSG------ 729

Query: 360  IDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLARD 539
              ET  ++V                     + + A    +  ++++    +L NYQLARD
Sbjct: 730  -SETSKVNVELLTDKSSEKEAA-------SDDERATAESEEHEVSELPQADLQNYQLARD 781

Query: 540  RTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSLH 719
            R RR +R P R+    +I+Y     + +   EP  + +A++S H  +WL AM +EM SL 
Sbjct: 782  RVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQ 841

Query: 720  VNNTWILVPKPENCSLVDCKWLFKVKNEN----DSVRYKARLVAKGFTQKEGIDYTEIFA 887
             N TW L+P P N  L++CKW+FK +NE     +  +YKARLVA+GFTQ+EG+D+ EIF+
Sbjct: 842  RNQTWTLIPNPGNKRLINCKWIFK-RNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFS 900

Query: 888  PVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGF 1031
            PVVK +++RI+LA+ A  + EL+Q+DVKTAFLHG+L E+I M QPEGF
Sbjct: 901  PVVKHSSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGF 948


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  266 bits (681), Expect = 8e-69
 Identities = 145/351 (41%), Positives = 210/351 (59%), Gaps = 9/351 (2%)
 Frame = +3

Query: 9    YLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPE 188
            YLINRSPS     K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP 
Sbjct: 665  YLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPS 724

Query: 189  GVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLGLS 356
            GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+   
Sbjct: 725  GVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVEHLISSG 780

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLAR 536
            H  E EN+ +                     N D   + D     + +  ++     +A+
Sbjct: 781  HAPEKENVAI---------------------NQDAPVIEDS----DSSIVQQSSKRSIAK 815

Query: 537  DRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHEEMN 710
            D+ +RNI+ P R+ ++  +++Y  SV E I+ N EP TY +A+ S+    W+ AMH+EM 
Sbjct: 816  DKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEME 875

Query: 711  SLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYTEI 881
            SL  N+TW  V  P+    + CKW+FK K   + +D  RYKARLVAKG++Q  GID+ ++
Sbjct: 876  SLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDV 935

Query: 882  FAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            F+P++K +++R +L + A  ++EL+Q+DVKTAFLHG+L E IYM QPEGFV
Sbjct: 936  FSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 986


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  266 bits (681), Expect = 8e-69
 Identities = 145/351 (41%), Positives = 210/351 (59%), Gaps = 9/351 (2%)
 Frame = +3

Query: 9    YLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPE 188
            YLINRSPS     K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP 
Sbjct: 665  YLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPS 724

Query: 189  GVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLGLS 356
            GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+   
Sbjct: 725  GVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVEHLISSG 780

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLAR 536
            H  E EN+ +                     N D   + D     + +  ++     +A+
Sbjct: 781  HAPEKENVAI---------------------NQDAPVIEDS----DSSIVQQSSKRSIAK 815

Query: 537  DRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHEEMN 710
            D+ +RNI+ P R+ ++  +++Y  SV E I+ N EP TY +A+ S+    W+ AMH+EM 
Sbjct: 816  DKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEME 875

Query: 711  SLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYTEI 881
            SL  N+TW  V  P+    + CKW+FK K   + +D  RYKARLVAKG++Q  GID+ ++
Sbjct: 876  SLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFNDV 935

Query: 882  FAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            F+P++K +++R +L + A  ++EL+Q+DVKTAFLHG+L E IYM QPEGFV
Sbjct: 936  FSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 986


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  266 bits (679), Expect = 1e-68
 Identities = 146/353 (41%), Positives = 211/353 (59%), Gaps = 9/353 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINRSP   +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 600  ACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 659

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
              GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 660  ASGVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQEKASVQVEHLIS 715

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E E++ +                     N D   + D    +    P+      +
Sbjct: 716  SGHAPEKEDVAI---------------------NQDAPVIEDSDSSIVHQSPKR----SI 750

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHEE 704
            A+D+ +RNI+ P R+ ++ ++++Y  SV E I+ N EP TY +A+ S+    W+ AMH+E
Sbjct: 751  AKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRWITAMHDE 810

Query: 705  MNSLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYT 875
            M SL  N+TW LV  P+    + CKW+FK K   + +D  RYKARLVAKG++Q  GID+ 
Sbjct: 811  MESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFN 870

Query: 876  EIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            ++F+PVVK +++R +L + A  ++EL+Q++VKTAFLHG+L E IYM QPEGFV
Sbjct: 871  DVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFLHGELEEDIYMEQPEGFV 923


>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
          Length = 1007

 Score =  263 bits (673), Expect = 6e-68
 Identities = 145/353 (41%), Positives = 209/353 (59%), Gaps = 9/353 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+S   +++S+L+VFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 410  ACYLINRSPSYAIDKKTPIEVWSDSPVNYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGY 469

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
            P G+KGY+LW       K + SR+V+F+ES    D P  S  +P+   E A  +VE L+ 
Sbjct: 470  PSGMKGYKLWCPKTK--KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLIS 525

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E EN+ +                     N D   + D         P+      +
Sbjct: 526  SGHAPEKENVAI---------------------NQDVPVIEDSDSSTVQQSPKRF----I 560

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHEE 704
            A+D+ +RN + P R+ ++  +++Y  SV E I+ N EP TY +A+ S+    W+ AMH+E
Sbjct: 561  AKDKPKRNTKPPQRYIEEANIVAYALSVAEDIEGNAEPSTYSEAIVSDDCNRWITAMHDE 620

Query: 705  MNSLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYT 875
            M SL  N+TW LV  P+    + CKW+FK K   + +D   YKARLVAKG++Q  GID+ 
Sbjct: 621  MESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGISPSDEAMYKARLVAKGYSQIPGIDFN 680

Query: 876  EIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            ++F+PVVK +++R +L++ A  ++EL+Q+DVKTAFLHG+L E IYM Q EGFV
Sbjct: 681  DVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQSEGFV 733


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  263 bits (672), Expect = 8e-68
 Identities = 146/353 (41%), Positives = 208/353 (58%), Gaps = 9/353 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINRSPS  +  K P  V+SG   ++S+L+VFGC A+ H    KLEPR  KC+FLGY
Sbjct: 537  ACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGY 596

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLG 350
              GVKGY+LW       K + SR+V+F+ES    D P  S  +P+   E    +VE L+ 
Sbjct: 597  LSGVKGYKLWCPETK--KVVISRNVVFHESIMLHDKP--STNVPVESQEKVSVQVEHLIS 652

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
              H  E E++ +                     N D   + D    +    P+      +
Sbjct: 653  SGHAPEKEDVAI---------------------NQDAPVIEDSDSSIVQQSPKR----SI 687

Query: 531  ARDRTRRNIRQPTRF-DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHEE 704
            A+DR +RN + P R+ ++  +++Y  SV E I+ N EP TY DA+ S+    W+ AMH+E
Sbjct: 688  AKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDE 747

Query: 705  MNSLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYT 875
            M SL  N++W L   P+    + CKW+FK K   + +D  RYKARLVAKG++Q  GID+ 
Sbjct: 748  MESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQIPGIDFN 807

Query: 876  EIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            ++F+PVVK +++R +L++ A  ++EL+Q+DVKTAFLHG+L E IYM QPEGFV
Sbjct: 808  DVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 860


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  259 bits (662), Expect = 1e-66
 Identities = 149/357 (41%), Positives = 212/357 (59%), Gaps = 13/357 (3%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 620  ACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 679

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLS-- 356
              GVKGY+LW   E G K   SR V+FNES    +  T  LP SE  P K  Q + +   
Sbjct: 680  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 732

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDD------LVDLNDNEPEELG 518
            H+D+   + V                     +V + + HDD      ++ L +  P    
Sbjct: 733  HVDDDTGVQVEPVHEQDDHN----------NDVADDDAHDDVQQTPPILQLEEELP---- 778

Query: 519  NYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFESIDNC-EPKTYQDALKSEHSQEWLNA 692
               +A+ +++R  + P R  ++  +  Y  S  E ++N  EP TY++A++   S+ W++A
Sbjct: 779  ---IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISA 835

Query: 693  MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEG 863
            MHEEM SL  N+TW +VP P+    + CKW+FK K   + ++  +YKARLVA+G++Q  G
Sbjct: 836  MHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPG 895

Query: 864  IDYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            +DY ++F+PVVK +++R  L++ A  + EL+QLDVKTAFLHG+L E IYM QPEGF+
Sbjct: 896  VDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFI 952


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  259 bits (662), Expect = 1e-66
 Identities = 149/357 (41%), Positives = 212/357 (59%), Gaps = 13/357 (3%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 620  ACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 679

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLS-- 356
              GVKGY+LW   E G K   SR V+FNES    +  T  LP SE  P K  Q + +   
Sbjct: 680  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 732

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDD------LVDLNDNEPEELG 518
            H+D+   + V                     +V + + HDD      ++ L +  P    
Sbjct: 733  HVDDDTGVQVEPVHEQDDHN----------NDVADDDAHDDVQQTPPILQLEEELP---- 778

Query: 519  NYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFESIDNC-EPKTYQDALKSEHSQEWLNA 692
               +A+ +++R  + P R  ++  +  Y  S  E ++N  EP TY++A++   S+ W++A
Sbjct: 779  ---IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISA 835

Query: 693  MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEG 863
            MHEEM SL  N+TW +VP P+    + CKW+FK K   + ++  +YKARLVA+G++Q  G
Sbjct: 836  MHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPG 895

Query: 864  IDYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            +DY ++F+PVVK +++R  L++ A  + EL+QLDVKTAFLHG+L E IYM QPEGF+
Sbjct: 896  VDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFI 952


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  259 bits (661), Expect = 2e-66
 Identities = 149/357 (41%), Positives = 212/357 (59%), Gaps = 13/357 (3%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 620  ACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 679

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLS-- 356
              GVKGY+LW   E G K   SR V+FNES    +  T  LP SE  P K  Q + +   
Sbjct: 680  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 732

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDD------LVDLNDNEPEELG 518
            H+D+   + V                     +V + + HDD      ++ L +  P    
Sbjct: 733  HVDDYTGVQVEPVHEQDDHN----------NDVADDDAHDDVQQTPPILQLEEELP---- 778

Query: 519  NYQLARDRTRRNIRQPTRF-DDFQMISYVFSVFESIDNC-EPKTYQDALKSEHSQEWLNA 692
               +A+ +++R  + P R  ++  +  Y  S  E ++N  EP TY++A++   S+ W++A
Sbjct: 779  ---IAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENWISA 835

Query: 693  MHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEG 863
            MHEEM SL  N+TW +VP P+    + CKW+FK K   + ++  +YKARLVA+G++Q  G
Sbjct: 836  MHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYSQIPG 895

Query: 864  IDYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            +DY ++F+PVVK +++R  L++ A  + EL+QLDVKTAFLHG+L E IYM QPEGF+
Sbjct: 896  VDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFI 952


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  258 bits (660), Expect = 2e-66
 Identities = 152/360 (42%), Positives = 212/360 (58%), Gaps = 16/360 (4%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A YLINRSPS+PL  K P  V+SG   D+S LKVFGC A+ H    KLEPR+ KC+FLGY
Sbjct: 622  ACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGY 681

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLS-- 356
              GVKGY+LW   E G K   SR V+FNES    +  T  LP SE  P K  Q + +   
Sbjct: 682  GSGVKGYKLW-NPETG-KTFMSRSVVFNES----VMFTNSLP-SEHVPEKELQRMHMQVE 734

Query: 357  HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLV---DLNDNEPEELGNYQ 527
            H+D+   + V                    E VD  + H++ V   D +D+  +     Q
Sbjct: 735  HVDDDTGVQV--------------------EPVDEQDDHNNDVADDDAHDDVQQTPPILQ 774

Query: 528  LARD------RTRRNIRQPTRF-DDFQMISYVFSVFESIDNC-EPKTYQDALKSEHSQEW 683
            L  D      +++R  + P R  ++  +  Y  S  E ++N  EP TY++A++   S+ W
Sbjct: 775  LEEDLSIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSENW 834

Query: 684  LNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNE---NDSVRYKARLVAKGFTQ 854
            ++AMHEEM SL  N+TW +VP P+    + CKW+FK K     ++  +YKARLVA+G++Q
Sbjct: 835  ISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYSQ 894

Query: 855  KEGIDYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
              G+DY ++F+PVVK +++R  L++ A  + EL+QLDVKTAFLHG+L E IYM QPEGF+
Sbjct: 895  IPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFI 954


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  256 bits (655), Expect = 8e-66
 Identities = 144/363 (39%), Positives = 211/363 (58%), Gaps = 19/363 (5%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A Y+INRSPS  +    PE ++  ++  + +L+     A+VH    KL+PR+ K +F+GY
Sbjct: 316  AVYIINRSPSAAIDHNVPEELWLNRKPGYKHLRRLRAVAYVHVDQGKLKPRAIKGIFIGY 375

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESD-FPCLSATMPLPESEPAPNKVEQLL---- 347
            P G KGY++WL  E   K + SR+VIF E   +  L+    + + E    + +  L    
Sbjct: 376  PSGTKGYKVWLLEEQ--KCVISRNVIFQEEVVYKDLNDKETVVKKEDIRTQTDNHLVISK 433

Query: 348  --------GLSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNE 503
                    G++HI+E E                        E+ +N E   + V+  D  
Sbjct: 434  TKEVSDQGGVTHIEECE------------------------ESDENDEQEPETVNETDPT 469

Query: 504  PEE---LGNYQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHS 674
             E    L NYQLA+DR RR I  P RF +   +++   V ES+   EP++YQ+A + +  
Sbjct: 470  VESEGSLANYQLAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPESYQEATQDKEW 529

Query: 675  QEWLNAMHEEMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEN---DSVRYKARLVAKG 845
             +W NA HEEM+SL  N TW LV KP N  ++ C+WLFK+K+     + VR+KARLVAKG
Sbjct: 530  LKWKNATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKG 589

Query: 846  FTQKEGIDYTEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPE 1025
            +TQ+EG+DY EIFAPVVK T++R+++++    + EL+Q+DVKTAFLHGDL E++YM QPE
Sbjct: 590  YTQREGVDYQEIFAPVVKHTSIRVLMSVVVDQDMELEQMDVKTAFLHGDLEEELYMEQPE 649

Query: 1026 GFV 1034
            GF+
Sbjct: 650  GFI 652


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  255 bits (652), Expect = 2e-65
 Identities = 142/351 (40%), Positives = 204/351 (58%), Gaps = 5/351 (1%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            AAYLINRSP+  +    PE ++  ++  + +L+ FG  A+VHQ   KL+PR+ K  FLGY
Sbjct: 633  AAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQDQGKLKPRALKGFFLGY 692

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLLGLSHI 362
            P G KGY++WL  E   K + SR+V+F ES          L   E   + + Q    S  
Sbjct: 693  PAGTKGYKVWLLEEE--KCVISRNVVFQES-----VVYRDLKVKEDDTDNLNQKETTSSE 745

Query: 363  DETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELG--NYQLAR 536
             E                          E   ++E   +  +     P+  G   Y+LAR
Sbjct: 746  VEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVEYSEKTQETPKRTGLTTYKLAR 805

Query: 537  DRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEEMNSL 716
            DR RRNI  PTRF +   +++   V E+    EP++YQ+A++S+  ++W  A H+EM+SL
Sbjct: 806  DRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSL 865

Query: 717  HVNNTWILVPKPENCSLVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGIDYTEIFA 887
              N TW LV KP++  ++ C+WLFK+K+    V   R+KARLVAKG+TQ+EG+DY EIFA
Sbjct: 866  MKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFA 925

Query: 888  PVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVDN 1040
            PVVK  ++RI+++L    + EL+Q+DVKT FLHGDL E++YM QPEGFV +
Sbjct: 926  PVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSD 976


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  253 bits (647), Expect = 7e-65
 Identities = 142/354 (40%), Positives = 208/354 (58%), Gaps = 9/354 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            A +LIN+SPS  ++   PE  ++G   D+  LK FG  A++H    KL PR+KK +FLGY
Sbjct: 621  AVFLINKSPSSSIEFDIPEEKWTGHPPDYKILKKFGSVAYIHSDQGKLNPRAKKGIFLGY 680

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDFPCLSATMPLPESEPAPNKVEQLL----G 350
            P+GVK +++WL  +   K + SRD++F E+          + E +    +VE+ L     
Sbjct: 681  PDGVKRFKVWLLEDR--KCVVSRDIVFQENQMYKELQKNDMSEEDKQLTEVERTLIELKN 738

Query: 351  LSHIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQL 530
            LS  DE ++                        +   +   D  V+  D++ + L NY L
Sbjct: 739  LSADDENQS-------------EGGDNSNQEQASTTRSASKDKQVEETDSDDDCLENYLL 785

Query: 531  ARDRTRRNIRQPTRF--DDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHEE 704
            ARDR RR IR P RF  +D  ++ +  ++ E  +  EP+TY++A++S   ++W  A  EE
Sbjct: 786  ARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMRSPECEKWKQATIEE 845

Query: 705  MNSLHVNNTWILVPKPENCSLVDCKWLFKVKNENDSV---RYKARLVAKGFTQKEGIDYT 875
            M+S+  N+TW ++ KPE   ++ CKW+FK K     V   RYKARLVAKGF+Q+EGIDY 
Sbjct: 846  MDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQ 905

Query: 876  EIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFVD 1037
            EIF+PVVK  ++R +L++  QF+ EL+QLDVKTAFLHG+L E I M QPEG+ D
Sbjct: 906  EIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFLHGNLDEYILMSQPEGYED 959


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  253 bits (646), Expect = 9e-65
 Identities = 139/354 (39%), Positives = 213/354 (60%), Gaps = 10/354 (2%)
 Frame = +3

Query: 3    AAYLINRSPSVPLKGKCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGY 182
            AAYLINRSP+  +    PE ++  K+  + +L+ FG  A+VH    KL+PR+ K +F+GY
Sbjct: 643  AAYLINRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGKLKPRALKGIFIGY 702

Query: 183  PEGVKGYRLWLRGEPGFKAITSRDVIFNESDF---PCLSATMPLPESEPAPNKVEQLLGL 353
            P G KGY++WL  E   K + SR+V+F+E            +   E+EPA +    L+ +
Sbjct: 703  PAGTKGYKIWLLEE--HKCVISRNVLFHEESVYKDTMKKERVVESEAEPASHSKSTLIKV 760

Query: 354  S---HIDETENLHVXXXXXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEP-EELGN 521
                +++  E + V                    E+V+  +  +  V+L + +    L N
Sbjct: 761  KTPGNLNSGEVIQVSDEEESD-------------ESVEEEQEPETQVELPETQTTSSLAN 807

Query: 522  YQLARDRTRRNIRQPTRFDDFQMISYVFSVFESIDNCEPKTYQDALKSEHSQEWLNAMHE 701
            YQLARDR RR I  P RF +   +++     E++   EP++YQ+A   +  ++W  A HE
Sbjct: 808  YQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSDKEWKKWKLATHE 867

Query: 702  EMNSLHVNNTWILVPKPENCSLVDCKWLFKVKNEN---DSVRYKARLVAKGFTQKEGIDY 872
            EM+SL  N TW+LV KP+N  ++ C+WLFK+K+ +   + VRYKA+LVAKG+T +EG+DY
Sbjct: 868  EMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHREGVDY 927

Query: 873  TEIFAPVVKFTTVRIMLALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
             EIFA VVK T++RI++++    + EL+Q+DVKTAFLHG+L E++YM QPEG +
Sbjct: 928  QEIFALVVKHTSIRILMSVVVDQDLELEQMDVKTAFLHGELEEELYMEQPEGCI 981


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  251 bits (641), Expect = 3e-64
 Identities = 138/338 (40%), Positives = 202/338 (59%), Gaps = 9/338 (2%)
 Frame = +3

Query: 48   KCPESVFSGKEIDFSNLKVFGCAAFVHQKVDKLEPRSKKCVFLGYPEGVKGYRLWLRGEP 227
            K P  V+SG   ++S+L+VFGC A+ H    KLEPR+ KC+FLGYP GVK Y+LW     
Sbjct: 522  KTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKDYKLWCPKTK 581

Query: 228  GFKAITSRDVIFNES----DFPCLSATMPLPESEPAPNKVEQLLGLSHIDETENLHVXXX 395
              K + SR+V+F+ES    D P  S  +P+   E A  +VE L+   H  E E++ +   
Sbjct: 582  --KVVISRNVVFHESVMLHDKP--STNVPVESQEKASVQVEHLISSGHAPEKEDVAI--- 634

Query: 396  XXXXXXXXXXXXXXXMPENVDNAEMHDDLVDLNDNEPEELGNYQLARDRTRRNIRQPTRF 575
                              N D + + D         P+      +A+D+ +RNI+ P R+
Sbjct: 635  ------------------NQDASVIEDSDSSAVQQSPKR----SIAKDKPKRNIKPPRRY 672

Query: 576  -DDFQMISYVFSVFESID-NCEPKTYQDALKSEHSQEWLNAMHEEMNSLHVNNTWILVPK 749
             ++  +++Y  SV E I+ N EP TY +A+ S+    W+ AMH+EM SL  N+TW LV  
Sbjct: 673  IEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKL 732

Query: 750  PENCSLVDCKWLFKVK---NENDSVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIM 920
            P+    + CKW+FK K   + +D  RYKARLVAKG++Q  GID+ ++F+PV+K +++R +
Sbjct: 733  PKEKKPIRCKWIFKRKKGMSPSDEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTL 792

Query: 921  LALTAQFNWELKQLDVKTAFLHGDLTEKIYMRQPEGFV 1034
            L++ A  ++EL+Q+DVKTAFLHG+L E IYM QPEGFV
Sbjct: 793  LSIVAVHDYELEQMDVKTAFLHGELEEDIYMEQPEGFV 830