BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00003323
         (1435 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEL30343.1| RNA-directed DNA polymerase [Arachis hypogaea]         585   e-164
emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse tr...   573   e-161
emb|CCH50976.1| T4.15 [Malus x robusta]                               495   e-137
gb|AEL30371.1| TIR-NBS-LRR type disease resistance protein [Arac...   488   e-135
gb|ABB00038.1| reverse transcriptase family member [Glycine max]      486   e-134
gb|ABD28426.2| RNA-directed DNA polymerase (Reverse transcriptas...   462   e-127
ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840...   452   e-124
emb|CDJ92648.1| RNA-directed DNA polymerase (reverse transcripta...   437   e-120
gb|EMS49379.1| Retrovirus-related Pol polyprotein LINE-1 [Tritic...   424   e-116
emb|CBA11992.1| endonuclease-reverse transcriptase HmRTE-e01 [He...   424   e-116
gb|EHJ75084.1| endonuclease-reverse transcriptase HmRTE-e01 [Dan...   423   e-116
gb|EHJ64905.1| endonuclease-reverse transcriptase HmRTE-e01 [Dan...   423   e-116
gb|EHJ65195.1| endonuclease-reverse transcriptase HmRTE-e01 [Dan...   416   e-113
emb|CDJ90320.1| RNA-directed DNA polymerase (reverse transcripta...   409   e-111
emb|CDJ93835.1| RNA-directed DNA polymerase (reverse transcripta...   409   e-111
gb|ADI61822.1| endonuclease-reverse transcriptase [Bombyx mori]       407   e-111
emb|CDJ94991.1| RNA-directed DNA polymerase (reverse transcripta...   404   e-110
gb|EHJ71530.1| endonuclease-reverse transcriptase HmRTE-e01 [Dan...   402   e-109
gb|AAT40504.2| Polyprotein, putative [Solanum demissum]               392   e-106
ref|XP_006010506.1| PREDICTED: uncharacterized protein LOC102366...   392   e-106

>gb|AEL30343.1| RNA-directed DNA polymerase [Arachis hypogaea]
          Length = 562

 Score =  585 bits (1507), Expect = e-164
 Identities = 278/421 (66%), Positives = 341/421 (80%)
 Frame = +3

Query: 3    WLTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEAR 182
            WLTKLFN IL++KKMP EWRKS L+PIYKNKGDIQ+C NYRGIKL++HTMKLWERVIE  
Sbjct: 92   WLTKLFNEILRSKKMPGEWRKSTLVPIYKNKGDIQSCENYRGIKLMTHTMKLWERVIERG 151

Query: 183  IRNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIM 362
            +R ET + +NQFGFM GRS  EAI+L+RR+ E+Y   K+DLHMVFIDLEKAYDRV R+++
Sbjct: 152  LRKETQVTENQFGFMSGRSITEAIYLLRRMMERYRSNKRDLHMVFIDLEKAYDRVPREVL 211

Query: 363  WRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIID 542
            W+VLEK  ++IAYI AIKDMYDG TT ++T  G++ EFP  IGLHQGS+LSPYLF ++++
Sbjct: 212  WKVLEKMRVRIAYIRAIKDMYDGATTSVKTQGGVTEEFPIGIGLHQGSSLSPYLFTIVLE 271

Query: 543  EITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHF 722
             +T+H+Q+ +P C+LFADDIVL+ E RE +N KLE+W+EALE  G  ISR+KTEYMEC F
Sbjct: 272  VLTEHIQEPVPWCILFADDIVLMGELREDLNKKLELWKEALEVYGLRISRSKTEYMECKF 331

Query: 723  SKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILC 902
            S    N   +V+I  + +   KSFKYLG II++NGEI +DV HRIQAGW+KWRSAS  +C
Sbjct: 332  SLRRENTNIEVEIGENILRKVKSFKYLGCIIQDNGEIEQDVNHRIQAGWSKWRSASGFIC 391

Query: 903  DRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRN 1082
            D+K+PLKLKGKFY+TAIRPAMLYG EC A K EHE K+ VAE++MLRWM GHTRLD+IRN
Sbjct: 392  DKKVPLKLKGKFYRTAIRPAMLYGTECCAAKGEHEHKLSVAEVKMLRWMSGHTRLDKIRN 451

Query: 1083 EHIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGRGRPKKTWK 1262
            E IR +VGVAPI EKI E+RLRWFGHV RRP++ PVRR++  E   Q  +GRGRPKKT  
Sbjct: 452  EDIRERVGVAPIVEKIVESRLRWFGHVRRRPIEHPVRRVDEMED-GQRAKGRGRPKKTIH 510

Query: 1263 E 1265
            E
Sbjct: 511  E 511


>emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus
            domestica]
          Length = 622

 Score =  573 bits (1478), Expect = e-161
 Identities = 278/453 (61%), Positives = 344/453 (75%)
 Frame = +3

Query: 3    WLTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEAR 182
            WL  LFN ILKTKKMP+EWR S L+PIYKNKGD+QNC NYRGIKL+SHTMKLWERVIE R
Sbjct: 202  WLIDLFNRILKTKKMPNEWRTSPLVPIYKNKGDVQNCMNYRGIKLMSHTMKLWERVIEHR 261

Query: 183  IRNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIM 362
            +R ET + DNQFGFMPGRST+EAI+L+RRL E+Y + K+DLHMVFIDLEKAYDRV+RDI+
Sbjct: 262  LRQETRVSDNQFGFMPGRSTMEAIYLLRRLMERYRDGKKDLHMVFIDLEKAYDRVSRDII 321

Query: 363  WRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIID 542
            WR+LEK+G+++AYI AIKDMY+G  T +RT  G +  FP T+GLHQGS+LSPYLF L++D
Sbjct: 322  WRILEKKGVRVAYIQAIKDMYEGAKTAVRTYEGQTESFPITVGLHQGSSLSPYLFALVMD 381

Query: 543  EITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHF 722
            E+T H+Q  IP CMLFA DIVLIDET+EGVNAKL +WRE LESKG  +SR+KTEYMEC F
Sbjct: 382  ELTGHIQDDIPWCMLFAYDIVLIDETQEGVNAKLNLWREVLESKGLCLSRSKTEYMECKF 441

Query: 723  SKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILC 902
            S N   NE  V+I   E+  +  F+YLGSI+++NGE+++D+ HRIQAGW KW+SAS +LC
Sbjct: 442  SANGSQNELGVRIGDQEIPKSDRFRYLGSILQKNGELDEDLNHRIQAGWMKWKSASGVLC 501

Query: 903  DRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRN 1082
            DR++PLKLKGKFY+TAIRPAML                                 D+IRN
Sbjct: 502  DRRMPLKLKGKFYRTAIRPAML--------------------------------KDKIRN 529

Query: 1083 EHIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGRGRPKKTWK 1262
            E IR KVGVA I+ K+RE  LRWFGHV RRP DAP+RR +   +  Q ++GRGRP+KT +
Sbjct: 530  EDIRGKVGVAEIEGKMRENWLRWFGHVQRRPTDAPIRRCD-YGTKVQGRKGRGRPRKTLE 588

Query: 1263 EAIKHDMLYLEINENMAYDRKRWRDMIRIADPT 1361
            E ++ D+ YL++ E+M  DR +WR  I +ADPT
Sbjct: 589  ETLRKDLEYLDLMEDMTQDRAQWRSKIHVADPT 621


>emb|CCH50976.1| T4.15 [Malus x robusta]
          Length = 986

 Score =  495 bits (1275), Expect = e-137
 Identities = 255/454 (56%), Positives = 312/454 (68%), Gaps = 1/454 (0%)
 Frame = +3

Query: 3    WLTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEAR 182
            WLT LFN ILKTKKMP+EWR S L+PIYKNKGD+QNC NYRGIKL+SHTMKLWERVIE R
Sbjct: 598  WLTDLFNRILKTKKMPNEWRTSTLVPIYKNKGDVQNCMNYRGIKLMSHTMKLWERVIEHR 657

Query: 183  IRNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIM 362
            +R ET + DNQFGFMPGRST+EAI+L+RRL E+Y +                        
Sbjct: 658  LRQETRVSDNQFGFMPGRSTMEAIYLLRRLMERYRDG----------------------- 694

Query: 363  WRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIID 542
                 K+ + + +ID ++  YD      R P  I                          
Sbjct: 695  -----KKDLHMVFID-LEKAYD------RVPRDI-------------------------- 716

Query: 543  EITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHF 722
             + + L+K    CMLFADDIVLIDET+EGVNAKL +WRE LESKG  +SR+KTEYMEC F
Sbjct: 717  -LWRILEKK--GCMLFADDIVLIDETQEGVNAKLNLWREVLESKGLRLSRSKTEYMECKF 773

Query: 723  SKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILC 902
            S N   NE  V+I   E+  +  F+YLGSI+++NGE++ D+ HRIQAGW KW+SAS +LC
Sbjct: 774  SANGGQNELGVRIGDQEIPKSDRFRYLGSILQKNGELDGDLNHRIQAGWMKWKSASGVLC 833

Query: 903  DRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRN 1082
            DR++PLKLKGKFY+TAIRPAMLYG ECWA K++H  KM VAEMRMLRWMCGHTR D+IRN
Sbjct: 834  DRRMPLKLKGKFYRTAIRPAMLYGTECWAVKHQHVHKMGVAEMRMLRWMCGHTRKDKIRN 893

Query: 1083 EHIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLE-GRESLTQIKRGRGRPKKTW 1259
            E IR KVGVA I  K+RE +LRWFGHV RRP DAP+RR + G E   Q +RGRGRP+KT 
Sbjct: 894  EDIRGKVGVAEIQGKMRENQLRWFGHVQRRPTDAPIRRCDYGTE--VQGRRGRGRPRKTL 951

Query: 1260 KEAIKHDMLYLEINENMAYDRKRWRDMIRIADPT 1361
            +E ++ D+ YL++ ++M  DR +WR  I IADPT
Sbjct: 952  EETLRKDLEYLDLTKDMTQDRAQWRSKIHIADPT 985


>gb|AEL30371.1| TIR-NBS-LRR type disease resistance protein [Arachis hypogaea]
          Length = 1939

 Score =  488 bits (1257), Expect = e-135
 Identities = 249/452 (55%), Positives = 311/452 (68%), Gaps = 6/452 (1%)
 Frame = +3

Query: 3    WLTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEAR 182
            WLTKLF  IL++KKMPDEWRKS L+PIY+ KGDIQ+C NYRGIKL+SHTMKLW +     
Sbjct: 997  WLTKLFYEILRSKKMPDEWRKSTLVPIYRIKGDIQSCGNYRGIKLMSHTMKLWGK----- 1051

Query: 183  IRNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIM 362
                            G  T                          ++EK   R     +
Sbjct: 1052 ----------------GDRT--------------------------EVEKRDTRYQGRFL 1069

Query: 363  WRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIID 542
            W+VLEKR ++IAYI AIKDMY+G TT ++T  G++ EFP  IGLHQGS+LSPYLF L+++
Sbjct: 1070 WKVLEKRRVRIAYIRAIKDMYEGATTSVKTQGGVTEEFPIGIGLHQGSSLSPYLFTLVLE 1129

Query: 543  EITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHF 722
             +T+H+Q+ +P CMLFADDIVL+ E+RE +N KLE+WREALE  G  ISR+KTEYMEC F
Sbjct: 1130 VLTEHIQEPVPWCMLFADDIVLMGESREDLNKKLELWREALEVYGLRISRSKTEYMECKF 1189

Query: 723  SKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILC 902
            S    N+  +VKI  + +   KSFKYLG II++NGEI +DV HRIQAGW+KWRSAS  +C
Sbjct: 1190 SLRRENSNIEVKIGENILRKVKSFKYLGCIIQDNGEIEQDVNHRIQAGWSKWRSASGFIC 1249

Query: 903  DRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRN 1082
            D+K+PLKLKGKFY+TAIRPAMLYG ECWA K EHE K+ VAEM+MLRWM GHTRLD+IRN
Sbjct: 1250 DKKVPLKLKGKFYRTAIRPAMLYGTECWAAKGEHEHKLSVAEMKMLRWMSGHTRLDKIRN 1309

Query: 1083 EHIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGRGRPKKTWK 1262
            E IR +VGVAPI EK+ E+RLRWFGHV RRP++  VRR++  E   Q  +GRGRPKKT  
Sbjct: 1310 EDIRERVGVAPIVEKMVESRLRWFGHVGRRPIEHLVRRVDEMED-GQKAKGRGRPKKTIH 1368

Query: 1263 EAIKHDMLYLEINENMAYDR------KRWRDM 1340
            E +K D+   E   ++   +       +WRD+
Sbjct: 1369 EVVKRDLHETEAIHSIVLHKVYRETEGKWRDL 1400


>gb|ABB00038.1| reverse transcriptase family member [Glycine max]
          Length = 377

 Score =  486 bits (1251), Expect = e-134
 Identities = 231/379 (60%), Positives = 295/379 (77%)
 Frame = +3

Query: 225  MPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRGIKIAYI 404
            MPGRST+EAI+L+RR+ EQY   +QDLH++FIDLEKAYDRV R+I+W+ LEK+G+++AYI
Sbjct: 1    MPGRSTMEAIYLLRRVMEQYRMAQQDLHLIFIDLEKAYDRVPREILWKALEKKGVRVAYI 60

Query: 405  DAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQKSIPECM 584
             AI+DMYD ++T +RT  G S +FP TIGLHQGS LSPYLF LI+D +T+ +Q+  P CM
Sbjct: 61   RAIQDMYDRVSTSVRTQGGESDDFPITIGLHQGSTLSPYLFTLILDVLTEQIQEIAPRCM 120

Query: 585  LFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNETKVKID 764
            LFADDIVL+ E+RE +N +LE WR ALE+ GF +SR+K+EYMEC F+K   +N ++VKI 
Sbjct: 121  LFADDIVLLGESREELNERLETWRRALETHGFRLSRSKSEYMECQFNKRRVSN-SEVKIG 179

Query: 765  GHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKLKGKFYK 944
             H +     FKYLGS+I+++GEI  DV HRIQAGW KWR AS +LCD K+P+KLKGKFY+
Sbjct: 180  DHIIPQVTRFKYLGSVIQDDGEIEGDVNHRIQAGWMKWRKASGVLCDAKVPIKLKGKFYR 239

Query: 945  TAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVGVAPIDE 1124
            TA+RP +LYG ECWA K +HE K+ VAEMRMLRWMCG TR D+IRNE IR +VGVAPI E
Sbjct: 240  TAVRPTILYGTECWAVKSQHENKVGVAEMRMLRWMCGKTRQDKIRNEAIRERVGVAPIVE 299

Query: 1125 KIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGRGRPKKTWKEAIKHDMLYLEINE 1304
            K+ E RLRWFGHV RRP+D+ +RR++  E   Q  RGRGRPKKT +E IK D+    ++ 
Sbjct: 300  KMVENRLRWFGHVERRPVDSVLRRVDQMER-RQTIRGRGRPKKTIREVIKKDLEINGLDR 358

Query: 1305 NMAYDRKRWRDMIRIADPT 1361
            +M  DR  WR +I +ADPT
Sbjct: 359  SMVLDRTLWRKLIHVADPT 377


>gb|ABD28426.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 517

 Score =  462 bits (1190), Expect = e-127
 Identities = 210/337 (62%), Positives = 270/337 (80%)
 Frame = +3

Query: 3    WLTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEAR 182
            WL  LFN I++TKKM DEWR+S LIPI KNKGDIQNCANYRGIKL+SHTMKLWERVI+ R
Sbjct: 180  WLANLFNEIIRTKKMSDEWRRSTLIPIDKNKGDIQNCANYRGIKLMSHTMKLWERVIKRR 239

Query: 183  IRNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIM 362
            +R ET + DNQFGFM GRST+EAI+L++R+ E+Y   K+DLH+VF DLEK YDRV R+I+
Sbjct: 240  LRKETLVTDNQFGFMLGRSTMEAIYLLQRVMERYRTDKKDLHLVFFDLEKGYDRVPREIL 299

Query: 363  WRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIID 542
            W+ LEK+ ++IAYI AIKDMY+  +T ++T  G + +FP TIGLHQGS L+PYLF L++D
Sbjct: 300  WKALEKKRVRIAYIRAIKDMYERASTSVKTQDGTTEDFPITIGLHQGSTLTPYLFTLVLD 359

Query: 543  EITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHF 722
             +T+H+Q+  P CMLFADD+VL+ E+RE VN +LE WR+ALE+ GF +SR+KT+YMEC+F
Sbjct: 360  VLTEHIQELAPRCMLFADDVVLVGESREEVNGRLETWRQALEAYGFRLSRSKTKYMECNF 419

Query: 723  SKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILC 902
            S     +  +VK+  H +     FKYLGS ++ +GEI  DV+HRIQAGW KWR ASS+LC
Sbjct: 420  SGRRSRSTLEVKVGDHIIPQVTRFKYLGSFVQNDGEIEADVSHRIQAGWLKWRRASSVLC 479

Query: 903  DRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQK 1013
            D+K+PLKL GKFY+TA+RPA+LYG ECWA K +HE +
Sbjct: 480  DKKVPLKLTGKFYRTAVRPALLYGTECWAVKSQHENQ 516


>ref|XP_003581610.1| PREDICTED: uncharacterized protein LOC100840703 [Brachypodium
            distachyon]
          Length = 567

 Score =  452 bits (1164), Expect = e-124
 Identities = 218/381 (57%), Positives = 285/381 (74%), Gaps = 6/381 (1%)
 Frame = +3

Query: 234  RSTI--EAIHLIRRL--CEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRGIKIAY 401
            RSTI  E I ++ +    E+Y E+K+DLHMVFIDLEKAYD++ R++MW  LEK  +   Y
Sbjct: 189  RSTIISELIFMLDKAGDLERYKEQKKDLHMVFIDLEKAYDKIPRNVMWWALEKHKVPAKY 248

Query: 402  IDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQKSIPEC 581
            I  IKDMYD + T +RT  G + +FP  IGLHQGSALSPYLF L++DE+T+ +Q  IP C
Sbjct: 249  ITLIKDMYDNVVTSVRTSDGDTDDFPIKIGLHQGSALSPYLFDLVMDEVTRDIQGDIPWC 308

Query: 582  MLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNN-RNNETKVK 758
            MLFADD+VL+D++R GVN KLE+WR+ LESKGF +SR KTEYM+C FS       E +V 
Sbjct: 309  MLFADDVVLVDDSRTGVNRKLELWRQILESKGFRLSRTKTEYMKCGFSTTTPEEEEEEVS 368

Query: 759  IDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKLKGKF 938
            +DG  V    +F+YLGS+++++G+I++DV HRI+AGW KWR AS ILCD+++P KLKGKF
Sbjct: 369  LDGQVVPQKDTFRYLGSMLQKDGDIDEDVNHRIKAGWMKWRQASGILCDKRVPQKLKGKF 428

Query: 939  YKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVGVAPI 1118
            Y+TAIRPA+LYGAECW TK  H Q++ VAEMRMLRWMCGHTR DR+RN+ IR++VGVAPI
Sbjct: 429  YRTAIRPAILYGAECWPTKRRHVQQLGVAEMRMLRWMCGHTRRDRVRNDDIRDRVGVAPI 488

Query: 1119 DEKIRETRLRWFGHVYRRPLDAPVRRLEGR-ESLTQIKRGRGRPKKTWKEAIKHDMLYLE 1295
             EK+ + RLRWFGH+ RRPLDAPV    GR +    +KRGRGRP  TW+E++K D+    
Sbjct: 489  AEKLVQHRLRWFGHIQRRPLDAPVH--SGRLKRAGNVKRGRGRPNLTWEESVKRDLKGWN 546

Query: 1296 INENMAYDRKRWRDMIRIADP 1358
            I + +A +R  W+  I + +P
Sbjct: 547  ITKELAMNRAAWKLAIHVPEP 567


>emb|CDJ92648.1| RNA-directed DNA polymerase (reverse transcriptase) domain containing
            protein [Haemonchus contortus]
          Length = 479

 Score =  437 bits (1123), Expect = e-120
 Identities = 208/452 (46%), Positives = 292/452 (64%)
 Frame = +3

Query: 3    WLTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEAR 182
            WLT+  N +    ++PD WRKS ++PI+K KGD   C+NYRGI+L +HTMKL+ER++++R
Sbjct: 30   WLTRFLNTVTAEGRIPDAWRKSTIVPIFKQKGDAMECSNYRGIRLTTHTMKLYERLVDSR 89

Query: 183  IRNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIM 362
            +R    I   QFGFMP RST +AI + R++ E+Y E+++  ++ F+DLEKA+DR+ R ++
Sbjct: 90   LRELVPISQKQFGFMPERSTTDAIFIARQVMEKYREKRRPCYIAFLDLEKAFDRLPRQVL 149

Query: 363  WRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIID 542
            WR L KR +    I  +KDMYDG TT IRTP G +     T+G+HQGSALSP+LF+L +D
Sbjct: 150  WRALRKRKVPEHLISLVKDMYDGSTTTIRTPHGQTGAIDVTVGVHQGSALSPFLFLLTMD 209

Query: 543  EITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHF 722
             IT+ L     + +L+ADDI LI E+++ +  KL+ W+  L   G  ++  KT+++    
Sbjct: 210  VITEELMDGPLKTILYADDIALIAESKDELQDKLQNWQRVLAESGLRLNVKKTKFL---- 265

Query: 723  SKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILC 902
              +    E+ V   G  +   + F+YLGS +  +G +++ V  RI A W KWR ++ ILC
Sbjct: 266  -SSEEGTESIVDGRGEAIEKVQDFRYLGSDLAADGSVDQAVKSRINAAWMKWRESTGILC 324

Query: 903  DRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRN 1082
            DR+    LKGK Y+T +RP MLYG+ECW     HE ++  AEMRMLRW CG TRLDR+RN
Sbjct: 325  DRRCSRTLKGKVYRTVVRPTMLYGSECWPVSKSHEGQLHSAEMRMLRWACGWTRLDRVRN 384

Query: 1083 EHIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGRGRPKKTWK 1262
            E +R  +  API  K+RE RLRWFGHV RRP   P+R  E  E   Q KR RG PKK W+
Sbjct: 385  EDVRTAMQTAPIQLKMREQRLRWFGHVLRRPQSHPIR--EAMEFEAQGKRPRGAPKKRWR 442

Query: 1263 EAIKHDMLYLEINENMAYDRKRWRDMIRIADP 1358
            + IK D+   ++    A DR +WR + R ADP
Sbjct: 443  DVIKKDLAETKVTAEDAVDRMKWRRLTRTADP 474


>gb|EMS49379.1| Retrovirus-related Pol polyprotein LINE-1 [Triticum urartu]
          Length = 882

 Score =  424 bits (1090), Expect = e-116
 Identities = 204/348 (58%), Positives = 261/348 (75%), Gaps = 2/348 (0%)
 Frame = +3

Query: 291  RKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISS 470
            R +DLHMVFIDLEKAYD++ R++MW  LEK  +   YI  IKDMYD + T +RT    + 
Sbjct: 162  RNKDLHMVFIDLEKAYDKIPRNVMWWALEKHKVPAKYITLIKDMYDNVVTSVRTSDVDTD 221

Query: 471  EFPNTIGLHQGSALSPYLFILIIDEITKHLQKSIPECMLFADDIVLIDETREGVNAKLEV 650
            +FP  IGLHQGSALSPYLF L++DE+T+ +Q  IP CMLFADD+VL+D++R GVN KLE+
Sbjct: 222  DFPIKIGLHQGSALSPYLFALVMDEVTRDIQGDIPWCMLFADDVVLVDDSRTGVNRKLEL 281

Query: 651  WREALESKGFTISRAKTEYMECHFSKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGE 830
            WR+ LESKGF +SR KTEYM C FS   R  E +V +DG  V    +F YLGS+++E+G 
Sbjct: 282  WRQTLESKGFRLSRTKTEYMMCGFS-TTRCEEEEVSLDGQVVPRKDTFWYLGSLLQEDGG 340

Query: 831  INKDVTHRIQAGWNKWRSASSILCDRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQ 1010
            I++DV HRI+AGW KWR AS ILCD+++P KLKGKFY+T +RPAMLYGAECW TK  H Q
Sbjct: 341  IDEDVNHRIKAGWMKWRQASGILCDKRVPQKLKGKFYRTVVRPAMLYGAECWPTKRRHVQ 400

Query: 1011 KMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPV 1190
            ++ VAEM MLR MCGHTR DR+RN+ IR++VGVAPI+EK+ + RLRWFGH+  RP +APV
Sbjct: 401  QLDVAEMCMLRCMCGHTRKDRVRNDDIRDRVGVAPIEEKLVQHRLRWFGHIQHRPPEAPV 460

Query: 1191 R--RLEGRESLTQIKRGRGRPKKTWKEAIKHDMLYLEINENMAYDRKR 1328
               RL+  E+   +KRGRGRP  TW+E++K D+    I + +A DR R
Sbjct: 461  HSGRLKRAEN---VKRGRGRPNLTWEESVKRDLKDWSITKELAMDRGR 505


>emb|CBA11992.1| endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene]
          Length = 990

 Score =  424 bits (1089), Expect = e-116
 Identities = 207/454 (45%), Positives = 295/454 (64%), Gaps = 3/454 (0%)
 Frame = +3

Query: 6    LTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARI 185
            LT LFN IL T KMP +WR S + PIYK +G +Q+C +YRGIKL+SHTMKL+ER+I+ R+
Sbjct: 542  LTDLFNHILNTGKMPHQWRLSFITPIYKGRGSVQDCGSYRGIKLMSHTMKLFERMIDLRL 601

Query: 186  RNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMW 365
            R E ++ ++Q+GF PG  T++AI  +R L E Y E+++ LH+ F+DL+KA+D V R  +W
Sbjct: 602  RRECTVSESQYGFQPGSGTMDAIFALRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIW 661

Query: 366  RVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDE 545
              L  +GI  AYI+ I+ MY    + +RT  G +  FP T+G+HQGSALSP+LF +++D 
Sbjct: 662  WALRSKGIPEAYIEIIRGMYHDSASMVRTAVGDTRPFPITVGVHQGSALSPFLFNVVLDT 721

Query: 546  ITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFS 725
            ++ H+Q   P  M++ADDI LI E R  +  K+ +W+  LE+ G  ++ +KTEYM C   
Sbjct: 722  VSAHIQDQPPWLMMYADDIALIAENRLTLERKVNLWKGTLENGGLKLNVSKTEYMAC--- 778

Query: 726  KNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCD 905
              +R++ T + I       ++ F+YLGS++ E+G I+ DV  RI A W KWR  + ++CD
Sbjct: 779  -GSRDSST-ILIGPEPAVKSEKFRYLGSVMHESGGIDHDVHGRISAAWAKWREVTGVVCD 836

Query: 906  RKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNE 1085
            R+IP KLKG  YK+ +RP +LYG+ECW     H Q++ V EM+MLRWMCG TR DRIRN 
Sbjct: 837  RRIPPKLKGLIYKSIVRPVLLYGSECWPALSRHTQELHVTEMKMLRWMCGVTRSDRIRNT 896

Query: 1086 HIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGR---GRPKKT 1256
             IR  +GV  + +K++E RLRWFGHV RRP     +   GR+ L  +  G    GRP+K 
Sbjct: 897  FIRGSLGVRDVADKLQERRLRWFGHVTRRP-----KNYVGRKCLAILVPGARPPGRPRKR 951

Query: 1257 WKEAIKHDMLYLEINENMAYDRKRWRDMIRIADP 1358
            W + +  DM    +    A DR +W  + R ADP
Sbjct: 952  WLDVVMQDMRANGLTTEDAKDRAKWSRLSRKADP 985


>gb|EHJ75084.1| endonuclease-reverse transcriptase HmRTE-e01 [Danaus plexippus]
          Length = 472

 Score =  423 bits (1088), Expect = e-116
 Identities = 206/454 (45%), Positives = 292/454 (64%), Gaps = 3/454 (0%)
 Frame = +3

Query: 6    LTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARI 185
            LT LFN +L T  MP +WR S + PIYK +G +Q+C +YRG+K++SHTMKL+ER+I+ R+
Sbjct: 28   LTDLFNRVLNTGTMPHQWRYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDLRL 87

Query: 186  RNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMW 365
            R E ++ + Q+GF PG  T++AI  IR L E Y E+++ LH+ F+DL+KA+D V R  +W
Sbjct: 88   RRECTVSECQYGFQPGSGTLDAIFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIW 147

Query: 366  RVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDE 545
              L  +GI  AYID I+DMY    + +RT  G +  FP ++GLHQGSALSP+LF +++D 
Sbjct: 148  WALRFKGIPEAYIDIIRDMYRDSVSMVRTAVGDTKPFPISVGLHQGSALSPFLFNVVLDT 207

Query: 546  ITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFS 725
            ++ ++Q   P  M++ADDI LIDE+R  +  ++ +W+  LE+ G  ++  KTEYM C   
Sbjct: 208  VSANIQDQPPWLMMYADDIALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMAC--- 264

Query: 726  KNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCD 905
                 +   + I       ++ F+YLGSI+ E+G I+ DV  RI A W KWR  + ++CD
Sbjct: 265  --GSPDSCTIHIGPEPAVKSEKFRYLGSILHESGGIDHDVQARISAAWAKWRDVTGVVCD 322

Query: 906  RKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNE 1085
            R+IP KLKG  YK+ IRP +LYG+ECW T   H Q++ V EM+MLRWMCG TR DRIRN 
Sbjct: 323  RRIPTKLKGIIYKSIIRPVLLYGSECWPTLSRHTQELHVTEMKMLRWMCGVTRADRIRNT 382

Query: 1086 HIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGR---GRPKKT 1256
             IR  +GV  + +K++E+RLRW+GHV RRP         G+  L     G    GRP+K 
Sbjct: 383  FIRGSLGVRDVADKLQESRLRWYGHVARRP-----ENYVGKICLDMSVPGARPPGRPRKR 437

Query: 1257 WKEAIKHDMLYLEINENMAYDRKRWRDMIRIADP 1358
            W + +K DM    +    A DR +WR + R ADP
Sbjct: 438  WLDTVKQDMRANGLTTADAKDRAKWRSLSRKADP 471


>gb|EHJ64905.1| endonuclease-reverse transcriptase HmRTE-e01 [Danaus plexippus]
          Length = 985

 Score =  423 bits (1088), Expect = e-116
 Identities = 206/454 (45%), Positives = 292/454 (64%), Gaps = 3/454 (0%)
 Frame = +3

Query: 6    LTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARI 185
            LT LFN +L T  MP +WR S + PIYK +G +Q+C +YRG+K++SHTMKL+ER+I+ R+
Sbjct: 541  LTDLFNRVLNTGTMPHQWRYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDLRL 600

Query: 186  RNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMW 365
            R E ++ + Q+GF PG  T++AI  IR L E Y E+++ LH+ F+DL+KA+D V R  +W
Sbjct: 601  RRECTVSECQYGFQPGSGTLDAIFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIW 660

Query: 366  RVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDE 545
              L  +GI  AYID I+DMY    + +RT  G +  FP ++GLHQGSALSP+LF +++D 
Sbjct: 661  WALRFKGIPEAYIDIIRDMYRDSVSMVRTAVGDTKPFPISVGLHQGSALSPFLFNVVLDT 720

Query: 546  ITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFS 725
            ++ ++Q   P  M++ADDI LIDE+R  +  ++ +W+  LE+ G  ++  KTEYM C   
Sbjct: 721  VSANIQDQPPWLMMYADDIALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMAC--- 777

Query: 726  KNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCD 905
                 +   + I       ++ F+YLGSI+ E+G I+ DV  RI A W KWR  + ++CD
Sbjct: 778  --GSPDSCTIHIGPEPAVKSEKFRYLGSILHESGGIDHDVQARISAAWAKWREVTGVVCD 835

Query: 906  RKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNE 1085
            R+IP KLKG  YK+ IRP +LYG+ECW T   H Q++ V EM+MLRWMCG TR DRIRN 
Sbjct: 836  RRIPTKLKGIIYKSIIRPVLLYGSECWPTLSRHTQELHVTEMKMLRWMCGVTRADRIRNT 895

Query: 1086 HIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGR---GRPKKT 1256
             IR  +GV  + +K++E+RLRW+GHV RRP         G+  L     G    GRP+K 
Sbjct: 896  FIRGSLGVRDVADKLQESRLRWYGHVARRP-----ENYVGKICLDMSVPGARPPGRPRKR 950

Query: 1257 WKEAIKHDMLYLEINENMAYDRKRWRDMIRIADP 1358
            W + +K DM    +    A DR +WR + R ADP
Sbjct: 951  WLDTVKQDMRANGLTTADAKDRAKWRSLSRKADP 984


>gb|EHJ65195.1| endonuclease-reverse transcriptase HmRTE-e01 [Danaus plexippus]
          Length = 1253

 Score =  416 bits (1069), Expect = e-113
 Identities = 202/446 (45%), Positives = 287/446 (64%), Gaps = 3/446 (0%)
 Frame = +3

Query: 6    LTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARI 185
            LT LFN +L T  MP +WR S + PIYK +G +Q+C +YRG+K++SHTMKL+ER+I+ R+
Sbjct: 809  LTDLFNRVLNTGTMPHQWRYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDLRL 868

Query: 186  RNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMW 365
            R E ++ + Q+GF PG  T++AI  IR L E Y E+++ LH+ F+DL+KA+D V R  +W
Sbjct: 869  RRECTVSECQYGFQPGSGTLDAIFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIW 928

Query: 366  RVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDE 545
              L  +GI  AYID I+DMY    + +RT  G +  FP ++GLHQGSALSP+LF +++D 
Sbjct: 929  WALRFKGIPEAYIDIIRDMYRDSVSMVRTAVGDTKPFPISVGLHQGSALSPFLFNVVLDT 988

Query: 546  ITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFS 725
            ++ ++Q   P  M++ADDI LIDE+R  +  ++ +W+  LE+ G  ++  KTEYM C   
Sbjct: 989  VSANIQDQPPWLMMYADDIALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMAC--- 1045

Query: 726  KNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCD 905
                 +   + I       ++ F+YLGSI+ E+G I+ DV  RI A W KWR  + ++CD
Sbjct: 1046 --GSPDSCTIHIGPEPAVKSEKFRYLGSILHESGGIDHDVQARISAAWAKWRDVTGVVCD 1103

Query: 906  RKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNE 1085
            R+IP KLKG  YK+ IRP +LYG+ECW T   H Q++ V EM+MLRWMCG TR DRIRN 
Sbjct: 1104 RRIPTKLKGIIYKSIIRPVLLYGSECWPTLSRHTQELHVTEMKMLRWMCGVTRADRIRNT 1163

Query: 1086 HIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGR---GRPKKT 1256
             IR  +GV  + +K++E+RLRW+GHV RRP         G+  L     G    GRP+K 
Sbjct: 1164 FIRGSLGVRDVADKLQESRLRWYGHVARRP-----ENYVGKICLDMSVPGARPPGRPRKR 1218

Query: 1257 WKEAIKHDMLYLEINENMAYDRKRWR 1334
            W + +K DM    +    A DR +WR
Sbjct: 1219 WLDTVKQDMRANGLTTADAKDRAKWR 1244


>emb|CDJ90320.1| RNA-directed DNA polymerase (reverse transcriptase) domain containing
            protein [Haemonchus contortus]
          Length = 1526

 Score =  409 bits (1052), Expect = e-111
 Identities = 195/427 (45%), Positives = 275/427 (64%)
 Frame = +3

Query: 3    WLTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEAR 182
            WLT+  N +    ++PD WR+S ++PI+K KGD  +C+NYRGI+L +HTMKL+ER++++R
Sbjct: 569  WLTRFLNTVTAKGRIPDAWRRSTIVPIFKQKGDAMDCSNYRGIRLAAHTMKLYERLVDSR 628

Query: 183  IRNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIM 362
            +R    I + QFGFMPGRST +AI + R++  +Y E+++  ++ F+DLEKA+DR+ R ++
Sbjct: 629  LRELVPISEKQFGFMPGRSTTDAIFITRQVMGKYREKRRPCYIAFLDLEKAFDRLPRQVL 688

Query: 363  WRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIID 542
            WR L KR +    I  +KDMYDG TT IRTP G +     T+G+HQGSALSP+LF+L +D
Sbjct: 689  WRALRKRKVPEHLISLVKDMYDGSTTTIRTPHGQTGAIDVTVGVHQGSALSPFLFLLTMD 748

Query: 543  EITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHF 722
             IT+ L     + +L+ADDI LI E+++ +  KL+ W+  L   G  ++  K +++    
Sbjct: 749  VITEELMDGPLKTILYADDIALIAESKDELQDKLQNWQRVLAESGLRLNVKKAKFL---- 804

Query: 723  SKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILC 902
                   E+ V   G  +   + F+YLGS +  +G +++ V  RI A W KWR ++ ILC
Sbjct: 805  -SPEEGTESVVDGRGEAIEKVQDFRYLGSDLAADGSVDQAVKSRISAAWMKWRESTGILC 863

Query: 903  DRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRN 1082
            D +    LKGK Y+T +RP MLYG+ECW     HE ++  AEMRMLRW CG TRLDR RN
Sbjct: 864  DSRCSRTLKGKVYRTVVRPTMLYGSECWPVSKSHEGQLHSAEMRMLRWACGWTRLDRARN 923

Query: 1083 EHIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGRGRPKKTWK 1262
            E +R  +  API  K R  RLRWFGHV RRP   P+R  E  E   Q KR RG PKK W+
Sbjct: 924  EDVRTAMQTAPIQMKTRGQRLRWFGHVLRRPQSHPIR--EAMEFEAQGKRPRGAPKKRWR 981

Query: 1263 EAIKHDM 1283
            + IK D+
Sbjct: 982  DVIKKDL 988


>emb|CDJ93835.1| RNA-directed DNA polymerase (reverse transcriptase) domain containing
            protein [Haemonchus contortus]
          Length = 480

 Score =  409 bits (1052), Expect = e-111
 Identities = 194/452 (42%), Positives = 299/452 (66%)
 Frame = +3

Query: 3    WLTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEAR 182
            WLT+ FN ++  KK+P+ W++S  IPI+K KG + +C  YR I+L+SH+MK++ER++++R
Sbjct: 27   WLTEFFNQVVAEKKVPESWQQSTTIPIWKKKGSLGDCTCYRPIRLLSHSMKIFERIVDSR 86

Query: 183  IRNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIM 362
            IR+   +  NQ GF+   STI+AIH  R L E++ E+++ +H+ F+DLEKA+DRV RD++
Sbjct: 87   IRDIVELTTNQCGFVAACSTIDAIHAARLLLEKHREKRRPVHLAFLDLEKAFDRVPRDVI 146

Query: 363  WRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIID 542
            W  L + G+    I+ ++ +Y    + ++T  G S+EFP ++G+HQGSALSP LF++++D
Sbjct: 147  WYALRQHGVPEELIEWVRILYTSPKSRVQTAAGTSAEFPISVGVHQGSALSPLLFVVVMD 206

Query: 543  EITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHF 722
             ITK LQK  P  +L+ADD++L  E +  + ++++ W + L   G  ++  KTEY+    
Sbjct: 207  TITKDLQKPAPWTLLYADDVMLASEDKSELESQVQTWSDRLAMFGLRLNVKKTEYLTTDS 266

Query: 723  SKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILC 902
            S+        +KI+G E++ T +FKYLGS I  +G +  +   R+ A W KWRS + +LC
Sbjct: 267  SEPG-----SIKINGTELTRTTTFKYLGSAIASDGSLGFETNSRVNAAWLKWRSMTGVLC 321

Query: 903  DRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRN 1082
            D+ IP +LK K Y+T IRP  +YGAECW    E E ++ V E +MLRW  G TRLDRI N
Sbjct: 322  DKNIPERLKSKIYRTVIRPVAIYGAECWPATKEVEARLSVMETKMLRWTAGVTRLDRISN 381

Query: 1083 EHIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGRGRPKKTWK 1262
            + IR + GVAPI +K+RE RLRW+GH  R   D+ VR++     ++  KR RGRPK+ W 
Sbjct: 382  DAIRERFGVAPIVDKMREARLRWYGHTLRAKNDS-VRKISLNLDVSG-KRPRGRPKQRWL 439

Query: 1263 EAIKHDMLYLEINENMAYDRKRWRDMIRIADP 1358
            + +  D+  + I+ + A++R++WR  IR ADP
Sbjct: 440  DTLHEDLKAVNIHPDQAFNREKWRQHIRKADP 471


>gb|ADI61822.1| endonuclease-reverse transcriptase [Bombyx mori]
          Length = 996

 Score =  407 bits (1045), Expect = e-111
 Identities = 198/461 (42%), Positives = 294/461 (63%), Gaps = 6/461 (1%)
 Frame = +3

Query: 6    LTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARI 185
            LTKLFN +L++ KMP  WR S ++PIYK KG    C+NYRGIKL+SHTMKL+ERVI++R+
Sbjct: 544  LTKLFNCVLRSSKMPAAWRLSTIVPIYKGKGSKYECSNYRGIKLLSHTMKLYERVIDSRL 603

Query: 186  RNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMW 365
            R+E S+  N +GF+ G ST + +  +  + E+Y E+ + L++ F+D+EKA+DRV RD +W
Sbjct: 604  RSECSLSKNHYGFVQGLSTTDPMFALNTIAEEYREKLRPLYVAFLDMEKAFDRVPRDTIW 663

Query: 366  RVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDE 545
              L K+ +   Y++ I DMY    + +RT  G +       GLHQGS LSP+LF ++ID 
Sbjct: 664  WSLRKKNVPEHYVNVIIDMYRDARSMVRTVVGQTKPIAVAEGLHQGSVLSPFLFGMVIDS 723

Query: 546  ITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFS 725
            +T+  Q S     ++ADD+ +  E+R  +   L +W++ L++ G  +S AKT YM   F+
Sbjct: 724  LTEVAQSSASWTFIYADDVAICTESRTKLREALLLWKQQLQAGGLILSVAKTHYMS--FN 781

Query: 726  KNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCD 905
              +  + + + IDG  V++   +KYLG+++  +G +  ++ HRI A W KWR  S + CD
Sbjct: 782  DPDPGDNSPISIDGQLVNMCDQYKYLGTMMHRSGNLKCNIQHRIAAAWLKWREVSGVTCD 841

Query: 906  RKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNE 1085
            R++P+KLKG  YKT IRP ++YG+E WA    +   ++VAEM+MLRWMCG TRLD+IRNE
Sbjct: 842  RRMPVKLKGMIYKTIIRPVLMYGSETWAATKRNVHTIQVAEMKMLRWMCGVTRLDKIRNE 901

Query: 1086 HIRNKVGVAPIDEKIRETRLRWFGHVYRRPLD-----APVRRLEGRESLTQIKRGRGRPK 1250
            ++R  +GV  I +K++E+RLRW+GHV R+  D     A +  L GR       R RGRPK
Sbjct: 902  YVRGSLGVRDIADKMQESRLRWYGHVKRKQPDYVGNLALLLDLPGR-------RPRGRPK 954

Query: 1251 KTWKEAIKHDMLYLEINENMAYDRKRWRDMIRIADP-T*WD 1370
              W++ +  D     + +    DR +WR  +R ADP T WD
Sbjct: 955  TRWRDVVLKDKRECNVADEDVEDRAKWRSKVRKADPTTMWD 995


>emb|CDJ94991.1| RNA-directed DNA polymerase (reverse transcriptase) domain containing
            protein [Haemonchus contortus]
          Length = 478

 Score =  404 bits (1039), Expect = e-110
 Identities = 193/452 (42%), Positives = 296/452 (65%)
 Frame = +3

Query: 3    WLTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEAR 182
            WLT+ FN ++  +K+P+ W++S  IPI+K KG   +C  YR I+L+SH+MK++ER++++R
Sbjct: 27   WLTEFFNQVVAERKVPESWQQSTTIPIWKKKGSPGDCTCYRPIRLLSHSMKIFERIVDSR 86

Query: 183  IRNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIM 362
            IR+   +  NQ GF+ G STI+AIH  R L E++ E+++ +H+ F+DLEKA+DRV RD++
Sbjct: 87   IRDIVELTTNQCGFVAGCSTIDAIHATRLLLEKHREKRRPIHLAFLDLEKAFDRVPRDVI 146

Query: 363  WRVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIID 542
            W  L + G+    I+ ++ +Y    + ++T  G S+EFP ++G+HQGSALSP LF++++D
Sbjct: 147  WYALRQHGVPEELIEWVRILYTSPKSRVQTAAGTSAEFPISVGVHQGSALSPLLFVVVMD 206

Query: 543  EITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHF 722
             ITK LQK  P  +L+ADD++L  E +  + ++++ W + L   G  ++  KTEY+    
Sbjct: 207  AITKDLQKPAPWTLLYADDVMLASEDKSELESQVQTWSDRLAMFGLRLNVKKTEYLTTDS 266

Query: 723  SKNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILC 902
            S+        +KI+G E++ T +FKYLGS I  +G +  +   R+ A W KWRS + +LC
Sbjct: 267  SEPG-----SIKINGTELTRTTTFKYLGSAIASDGSLGFETNSRVNAAWLKWRSMTGVLC 321

Query: 903  DRKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRN 1082
            D+ IP  LK K Y+T IRP  +YG+ECW      E ++ V E +MLRW  G TRLDRI N
Sbjct: 322  DKNIPECLKSKIYRTVIRPVAIYGSECWPATKAVEARLSVMETKMLRWTAGVTRLDRISN 381

Query: 1083 EHIRNKVGVAPIDEKIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGRGRPKKTWK 1262
            + IR + GVAPI +K+RE RLRW+GH  R   D+ VR++ G       KR RGRPK+ W 
Sbjct: 382  DAIRERFGVAPIVDKMREARLRWYGHTLRAKNDS-VRKI-GLNLEVSGKRPRGRPKQRWL 439

Query: 1263 EAIKHDMLYLEINENMAYDRKRWRDMIRIADP 1358
            + +  D+  + I+ + A++R++WR  IR ADP
Sbjct: 440  DTLHEDLKAVNIHPDQAFNREKWRQHIRKADP 471


>gb|EHJ71530.1| endonuclease-reverse transcriptase HmRTE-e01 [Danaus plexippus]
          Length = 601

 Score =  402 bits (1033), Expect = e-109
 Identities = 195/439 (44%), Positives = 282/439 (64%), Gaps = 3/439 (0%)
 Frame = +3

Query: 45   MPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARIRNETSILDNQFGF 224
            MP +WR S + PIYK +G +Q+C +YRG+K++SHTMKL+ER+I+ R+R E ++ + Q+GF
Sbjct: 1    MPHQWRYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDLRLRRECTVSECQYGF 60

Query: 225  MPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMWRVLEKRGIKIAYI 404
             PG  T++AI  IR L E Y E+++ LH+ F+DL+KA+D V R  +W  L  +GI  AYI
Sbjct: 61   QPGSGTLDAIFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIWWALRFKGIPEAYI 120

Query: 405  DAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQKSIPECM 584
            D I+DMY    + +RT  G +  FP ++GLHQGSALSP+LF +++D ++ ++Q   P  M
Sbjct: 121  DIIRDMYRDSVSMVRTAVGDTKPFPISVGLHQGSALSPFLFNVVLDTVSANIQDQPPWLM 180

Query: 585  LFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNETKVKID 764
            ++ADDI LIDE+R  +  ++ +W+  LE+ G  ++  KTEYM C        +   + I 
Sbjct: 181  MYADDIALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMAC-----GSPDSCTIHIG 235

Query: 765  GHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKLKGKFYK 944
                  ++ F+YLGSI+ E+G I+ DV  RI A W KWR  + ++CDR+IP KLKG  YK
Sbjct: 236  PEPAVKSEKFRYLGSILHESGGIDHDVQARISAAWAKWRDVTGVVCDRRIPTKLKGIIYK 295

Query: 945  TAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVGVAPIDE 1124
            + IRP +LYG+ECW T   H Q++ V EM+MLRWMCG TR DRIRN  IR  +GV  + +
Sbjct: 296  SIIRPVLLYGSECWPTLSRHTQELHVTEMKMLRWMCGVTRADRIRNTFIRGSLGVRDVAD 355

Query: 1125 KIRETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGR---GRPKKTWKEAIKHDMLYLE 1295
            K++E+RLRW+GHV RRP         G+  L     G    GRP+K W + +K DM    
Sbjct: 356  KLQESRLRWYGHVARRP-----ENYVGKICLDMSVPGARPPGRPRKRWLDTVKQDMRANG 410

Query: 1296 INENMAYDRKRWRDMIRIA 1352
            +    A DR ++  ++R A
Sbjct: 411  LTTADAKDRAKYERLLRRA 429


>gb|AAT40504.2| Polyprotein, putative [Solanum demissum]
          Length = 868

 Score =  392 bits (1007), Expect = e-106
 Identities = 186/314 (59%), Positives = 232/314 (73%)
 Frame = +3

Query: 414  KDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDEITKHLQKSIPECMLFA 593
            KDMYDG  T +RT  G S  FP  IGLHQGS LSP+LF L++DE+T+ +Q+++P CMLFA
Sbjct: 379  KDMYDGAKTRVRTVGGDSEHFPVEIGLHQGSVLSPFLFALVMDELTRSIQETVPWCMLFA 438

Query: 594  DDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFSKNNRNNETKVKIDGHE 773
            DDIVLIDETR+ VNA+LEVWR+ LESKGF +SR KTEY+ C FS      + +V++    
Sbjct: 439  DDIVLIDETRDRVNARLEVWRQTLESKGFRLSRTKTEYLGCKFSDGLDETDVEVRLAAQV 498

Query: 774  VSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCDRKIPLKLKGKFYKTAI 953
            +   +SF+YLG++I+ +G+I+ DVTHR+ A W KWR AS +LCD+KI  KLKGKFY+  +
Sbjct: 499  IPKKESFRYLGAVIQGSGDIDDDVTHRVGAAWMKWRLASGVLCDKKISPKLKGKFYRVVV 558

Query: 954  RPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNEHIRNKVGVAPIDEKIR 1133
            RPA+LYGAECW  K  H  KM VAEMRMLRWMCGHTR D+IRNE IR KVGVA + +K+R
Sbjct: 559  RPALLYGAECWPVKNAHVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLR 618

Query: 1134 ETRLRWFGHVYRRPLDAPVRRLEGRESLTQIKRGRGRPKKTWKEAIKHDMLYLEINENMA 1313
            E RLRWFGHV RR  DAPVRR E    +   +RGRGRPKK W+E I+ D+  L I E+M 
Sbjct: 619  EARLRWFGHVKRRSADAPVRRCEVM-VVEGTRRGRGRPKKYWEEVIRQDLAMLHITEDMT 677

Query: 1314 YDRKRWRDMIRIAD 1355
             DRK WR  I++ D
Sbjct: 678  LDRKEWRSRIKVED 691


>ref|XP_006010506.1| PREDICTED: uncharacterized protein LOC102366231 [Latimeria chalumnae]
          Length = 1500

 Score =  392 bits (1006), Expect = e-106
 Identities = 193/380 (50%), Positives = 259/380 (68%)
 Frame = +3

Query: 6    LTKLFNVILKTKKMPDEWRKSILIPIYKNKGDIQNCANYRGIKLISHTMKLWERVIEARI 185
            LT+L+  I +  KMP EWR+S L+P++K KGD+Q+C NYRGI L+SH MKLWER+IE R+
Sbjct: 400  LTRLYRAIWEEGKMPTEWRESTLVPVFKRKGDVQDCNNYRGIALMSHAMKLWERIIEKRL 459

Query: 186  RNETSILDNQFGFMPGRSTIEAIHLIRRLCEQYNERKQDLHMVFIDLEKAYDRVNRDIMW 365
            R    I +NQFGF  GRSTI+AI  ++ L E+Y E+++DLHMVF+DLEKAYDRV R ++W
Sbjct: 460  RKLVQISENQFGFCQGRSTIDAIFALKILMEKYKEKRKDLHMVFVDLEKAYDRVPRGLIW 519

Query: 366  RVLEKRGIKIAYIDAIKDMYDGITTCIRTPTGISSEFPNTIGLHQGSALSPYLFILIIDE 545
              + KRGI   YI  +KDMY G    +R+  G ++ FP  +G+ QGSALSP+LFIL++D 
Sbjct: 520  WCMRKRGIPEVYIRLVKDMYQGSKIWVRSACGTTTSFPVKVGVRQGSALSPFLFILVLDT 579

Query: 546  ITKHLQKSIPECMLFADDIVLIDETREGVNAKLEVWREALESKGFTISRAKTEYMECHFS 725
            +TK +QK  P CMLFADDI+L  E+RE V   LE W + +E +G  +SR  T YM   FS
Sbjct: 580  LTKDIQKEPPWCMLFADDIMLCAESREEVEKDLERWVQCMEERGLKMSRMMTGYMVAKFS 639

Query: 726  KNNRNNETKVKIDGHEVSITKSFKYLGSIIEENGEINKDVTHRIQAGWNKWRSASSILCD 905
            + +   E+ +KI   ++  T+ FKYLGSII  +G +  ++  R  AGW KWR  S ++CD
Sbjct: 640  EGSDEMES-MKIGEKKLRRTEEFKYLGSIISTDGFLAGEIRARTTAGWVKWREVSGVICD 698

Query: 906  RKIPLKLKGKFYKTAIRPAMLYGAECWATKYEHEQKMRVAEMRMLRWMCGHTRLDRIRNE 1085
              IP  LKGK YK  IR A+++ AECW  + + EQ M V EMRMLRWM G  R D+I+NE
Sbjct: 699  NGIPAWLKGKVYKNVIRQALVFRAECWCIRKKEEQDMSVTEMRMLRWMLGMMRTDKIKNE 758

Query: 1086 HIRNKVGVAPIDEKIRETRL 1145
             IR ++ V  + E +RE RL
Sbjct: 759  EIRKRLKVTQVVE-MREKRL 777