BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00002802
         (980 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   117   2e-34
gb|AAK29467.1| polyprotein-like [Solanum chilense]                    121   4e-34
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   107   2e-32
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  106   4e-32
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   100   6e-31
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      98   2e-30
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]         96   3e-30
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   102   6e-30
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              103   6e-30
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              103   6e-30
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              103   8e-30
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              103   8e-30
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   100   1e-29
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   100   1e-29
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         90   1e-29
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]          94   2e-29
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]            94   2e-29
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           100   2e-29
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...    95   2e-29
emb|CAN61435.1| hypothetical protein VITISV_033767 [Vitis vinifera]   100   3e-29

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score =  117 bits (292), Expect(2) = 2e-34
 Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 3/174 (1%)
 Frame = +2

Query: 194 CYECGQSGHYIRECPNKR---GNQNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXXX 364
           CY C Q GH+ R+CPN R   G  + ++N+  N A+  +N  +V                
Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDD-NTAAMVQNNDNVVLFINEEEECMHLSGP 290

Query: 365 XCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVL 544
             E+EW+VD+  + H TP + LF  Y     G+V + N     I GIGD+C+K + G  L
Sbjct: 291 --ESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTL 348

Query: 545 TLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVKRRNLY 706
            LK+VRHVPDL  NLIS  +L+ DG E  +     ++ KG+LVI K V R  LY
Sbjct: 349 VLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLY 402



 Score = 57.0 bits (136), Expect(2) = 2e-34
 Identities = 26/52 (50%), Positives = 32/52 (61%)
 Frame = +3

Query: 783 DLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSS 938
           DLWHKR+GHMS KGL+IL K       K + +  CD C+ GK  +V F  SS
Sbjct: 423 DLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSS 474


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score =  121 bits (303), Expect(2) = 4e-34
 Identities = 69/173 (39%), Positives = 92/173 (53%), Gaps = 2/173 (1%)
 Frame = +2

Query: 194 CYECGQSGHYIRECPN-KRGN-QNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXX 367
           CY C Q GH+ R+CPN KRG  ++  Q    N A+  +N  DV                 
Sbjct: 233 CYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAAMVQNNDDVVLLINEEEECMHLAGT- 291

Query: 368 CETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVLT 547
            E+EW+VD+  ++H TP + LF  Y    +G+V + N     I GIGD+C K + G  L 
Sbjct: 292 -ESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVGCTLV 350

Query: 548 LKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVKRRNLY 706
           LK+VRHVPDL  NLIS  +L+ DG E  +     ++ KG LVI K V R  LY
Sbjct: 351 LKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLY 403



 Score = 51.2 bits (121), Expect(2) = 4e-34
 Identities = 24/57 (42%), Positives = 32/57 (56%)
 Frame = +3

Query: 768 ENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSS 938
           E +  DLWHKR+GH S KGL+IL K       K + +  C+  + GK  +V F  SS
Sbjct: 419 EENSADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIKPCNYWLFGKQHRVSFQTSS 475


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  107 bits (267), Expect(2) = 2e-32
 Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 9/180 (5%)
 Frame = +2

Query: 194 CYECGQSGHYIREC---PNK---RGNQN--FKQNEHANMASTSENVPDVXXXXXXXXXXX 349
           C  C + GH I +C    NK   +GN     KQ E    A  ++N PD            
Sbjct: 178 CKYCKRGGHDISDCWKLQNKEKHKGNYKPKGKQEEQGKAAVATDNKPDAELLVAYAGCVQ 237

Query: 350 XXXXXXCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFD 529
                    EWL+D+GCT+HM P +  F+ Y+ V  G+V + +   C + G+G + +K  
Sbjct: 238 T------SDEWLLDTGCTYHMCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMF 291

Query: 530 SGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRNLY 706
            G + TL +VRH+P L  NLIS ++L+  G     G G++K+ KG+LV+ KA +K  +LY
Sbjct: 292 DGCIRTLSDVRHIPSLKRNLISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLY 351



 Score = 59.7 bits (143), Expect(2) = 2e-32
 Identities = 28/67 (41%), Positives = 38/67 (56%)
 Frame = +3

Query: 780 TDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSSPPNKSAC 959
           +DLWH RLGHMS  GL  L K G      +  + FC+ C+ GKH +VKF  S+   +   
Sbjct: 372 SDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEG-- 429

Query: 960 SEILEYL 980
             IL+Y+
Sbjct: 430 --ILDYV 434


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  106 bits (264), Expect(2) = 4e-32
 Identities = 64/177 (36%), Positives = 92/177 (51%), Gaps = 5/177 (2%)
 Frame = +2

Query: 194 CYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSE----NVPDVXXXXXXXXXXXXXXX 361
           CY CG+ GH  ++C +     N K  E ++ ASTS+    +  D                
Sbjct: 230 CYNCGKRGHLKKDCWS-----NKKSGEKSSEASTSQGCVASTSDDGEVLYSEAAVSTKGK 284

Query: 362 XXCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYV 541
                 W+VDSG T+HMTP +  F  Y+ V  G+V + N     IVGIG V +K   G +
Sbjct: 285 NRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTI 344

Query: 542 LTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK-RRNLYV 709
            TL+ VRHV +L  NL+S   L+D G +     G++K++KG+LV+ KA K   NLY+
Sbjct: 345 RTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYM 401



 Score = 59.7 bits (143), Expect(2) = 4e-32
 Identities = 25/63 (39%), Positives = 40/63 (63%)
 Frame = +3

Query: 762 GSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSSP 941
           GS+ + T +WH+RLGHMS +GL++L +       K   +PFC+ CV+ K  ++KF  S+ 
Sbjct: 417 GSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLKFAKSTA 476

Query: 942 PNK 950
            +K
Sbjct: 477 RSK 479


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  100 bits (249), Expect(2) = 6e-31
 Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 4/176 (2%)
 Frame = +2

Query: 194 CYECGQSGHYIREC----PNKRGNQNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXX 361
           C+ CG+ GH+ ++C       +  Q    N  +++A ++E                    
Sbjct: 221 CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVVTDS 280

Query: 362 XXCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYV 541
                EW++D+GC+FHMTP K  F ++KE+  G V + N     + GIG + ++   G  
Sbjct: 281 IA--NEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQ 338

Query: 542 LTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVKRRNLYV 709
           + L +VR++P++  NLIS  +LED G   K   G++KI+KG   I K  KR  LY+
Sbjct: 339 VILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYI 394



 Score = 61.6 bits (148), Expect(2) = 6e-31
 Identities = 30/69 (43%), Positives = 40/69 (57%)
 Frame = +3

Query: 774 DKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSSPPNKS 953
           D+T LWH RLGHMS KG+EIL K G   ++ +  + FC+ CV GK  +V F     P + 
Sbjct: 412 DETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSF----APAQH 467

Query: 954 ACSEILEYL 980
              E L Y+
Sbjct: 468 VTKEKLAYV 476


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 97.8 bits (242), Expect(2) = 2e-30
 Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 9/242 (3%)
 Frame = +2

Query: 8   LKSKELDLKVNRSSRQNSGEVMHVRGRSQNRFNKPGXXXXXXXXXXXXXXXXXXXXXXXX 187
           ++ ++ +   N  SR  S  +   R +S+ R+                            
Sbjct: 111 VRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYKS-------------------------- 144

Query: 188 XXCYECGQSGHYIREC-----PNKRGNQNF---KQNEHANMASTSENVPDVXXXXXXXXX 343
             C  C + GH I EC      +KR  +     K+ E    A  ++   D          
Sbjct: 145 --CKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGC 202

Query: 344 XXXXXXXXCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLK 523
                      +W++D+ CT+HM P +  F+ Y+ V  G+V + +   C + GIG V +K
Sbjct: 203 AQT------SDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIK 256

Query: 524 FDSGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRN 700
              G + TL +VRH+P+L  +LIS  +L+  G +   G G++K+ KG+LV+ KA +K  N
Sbjct: 257 MFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYAN 316

Query: 701 LY 706
           LY
Sbjct: 317 LY 318



 Score = 62.8 bits (151), Expect(2) = 2e-30
 Identities = 30/72 (41%), Positives = 41/72 (56%)
 Frame = +3

Query: 765 SENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSSPP 944
           S +D T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GKH +VKF  S+  
Sbjct: 337 SNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHT 396

Query: 945 NKSACSEILEYL 980
            +     IL+Y+
Sbjct: 397 TEG----ILDYV 404


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score = 95.5 bits (236), Expect(2) = 3e-30
 Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 9/180 (5%)
 Frame = +2

Query: 194 CYECGQSGHYIREC-----PNKRGNQNF---KQNEHANMASTSENVPDVXXXXXXXXXXX 349
           C  C + GH I +C      +KR  +     K+ E    A  ++   D            
Sbjct: 236 CKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQ 295

Query: 350 XXXXXXCETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFD 529
                    +W++D+ CT+HM P +  F+ Y+ V  G+V + +   C + GIG V +K  
Sbjct: 296 T------SDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMF 349

Query: 530 SGYVLTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRNLY 706
            G + TL +VRH+P+L  +LIS  +L+  G +   G G++K+ KG+LV+ KA +K  NLY
Sbjct: 350 DGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLY 409



 Score = 64.3 bits (155), Expect(2) = 3e-30
 Identities = 31/72 (43%), Positives = 42/72 (58%)
 Frame = +3

Query: 765 SENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSSPP 944
           S +D T+LWH RLGHMS  GL  L K G      +S + FC+ C+ GKH +VKF  S+  
Sbjct: 428 SNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHT 487

Query: 945 NKSACSEILEYL 980
            +     IL+Y+
Sbjct: 488 TEG----ILDYV 495


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  102 bits (253), Expect(2) = 6e-30
 Identities = 71/236 (30%), Positives = 106/236 (44%), Gaps = 3/236 (1%)
 Frame = +2

Query: 11  KSKELDLKVNRSSRQNSGEVMHVRGRSQNRFNKPGXXXXXXXXXXXXXXXXXXXXXXXXX 190
           K K   +  N  S  + GE +HVRGR++NR +                            
Sbjct: 179 KEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNE--------KNYDRRGRSKSKPPGNKK 230

Query: 191 XCYECGQSGHYIRECPNKRGNQNF-KQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXX 367
            C  C    H I EC   +  +   K++   ++AS + +  D                  
Sbjct: 231 FCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG---- 286

Query: 368 CETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSV-SLANQKQCNIVGIGDVCLKFDSGYVL 544
              EW++DS C+FH+   +  FS+YK V  G V  + +   C IVGIG V +K D G   
Sbjct: 287 -HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345

Query: 545 TLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRNLYV 709
           TLKNVR++P +  NLIS ++L+ +G +     G++K+ KG+LV  K  V    LYV
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYV 401



 Score = 56.6 bits (135), Expect(2) = 6e-30
 Identities = 26/61 (42%), Positives = 34/61 (55%)
 Frame = +3

Query: 753 AVCGSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPV 932
           A+   E  KT+LWH RLGHMS  G+  L K         S + FC+ C+ GKH +V+F  
Sbjct: 416 AITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNT 475

Query: 933 S 935
           S
Sbjct: 476 S 476


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  103 bits (258), Expect(2) = 6e-30
 Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 1/173 (0%)
 Frame = +2

Query: 194 CYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXXCE 373
           CY CG  GH  +EC N + N   K +E         +  D                    
Sbjct: 230 CYGCGMKGHVKKECWNNKKNGE-KNSEATTSQGCVASTSDDGEILYSEAATSSEGERQLN 288

Query: 374 TEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVLTLK 553
             W++DSG T+HMTP +  F +Y+ +  GSV + N     I G+G + LK   G V  ++
Sbjct: 289 DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 554 NVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK-RRNLYV 709
            VRHV  L  NL+S   L+D G +     G++K++KGNLV+ KA K   NLY+
Sbjct: 349 GVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYM 401



 Score = 54.7 bits (130), Expect(2) = 6e-30
 Identities = 22/59 (37%), Positives = 36/59 (61%)
 Frame = +3

Query: 750 NAVCGSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKF 926
           +    S+ + T +WH+RLGHMS +GL++L +       K   +PFC+ CV+ K  ++KF
Sbjct: 413 SVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKF 471


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  103 bits (257), Expect(2) = 6e-30
 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
 Frame = +2

Query: 194 CYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXXCE 373
           CY CG  GH  +EC N + N   K +E +       +  D                    
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGE-KNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 374 TEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVLTLK 553
             W++DSG T+HMTP +  F +Y+ +  GSV + N     I G+G + LK   G V  ++
Sbjct: 289 DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 554 NVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK-RRNLYV 709
            VRHV  L  NL+S   L+D G +     G++K++KGNLV+ KA K   NLY+
Sbjct: 349 GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYM 401



 Score = 55.1 bits (131), Expect(2) = 6e-30
 Identities = 22/59 (37%), Positives = 36/59 (61%)
 Frame = +3

Query: 750 NAVCGSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKF 926
           +    S+ + T +WH+RLGHMS +GL++L +       K   +PFC+ CV+ K  ++KF
Sbjct: 413 SVAASSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKF 471


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  103 bits (257), Expect(2) = 8e-30
 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
 Frame = +2

Query: 194 CYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXXCE 373
           CY CG  GH  +EC N + N   K +E +       +  D                    
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGE-KNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 374 TEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVLTLK 553
             W++DSG T+HMTP +  F +Y+ +  GSV + N     I G+G + LK   G V  ++
Sbjct: 289 DVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 554 NVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK-RRNLYV 709
            VRHV  L  NL+S   L+D G +     G++K++KGNLV+ KA K   NLY+
Sbjct: 349 GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYM 401



 Score = 54.7 bits (130), Expect(2) = 8e-30
 Identities = 22/59 (37%), Positives = 36/59 (61%)
 Frame = +3

Query: 750 NAVCGSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKF 926
           +    S+ + T +WH+RLGHMS +GL++L +       K   +PFC+ CV+ K  ++KF
Sbjct: 413 SVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKF 471


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  103 bits (257), Expect(2) = 8e-30
 Identities = 59/173 (34%), Positives = 85/173 (49%), Gaps = 1/173 (0%)
 Frame = +2

Query: 194 CYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXXCE 373
           CY CG  GH  +EC N + N   K +E +       +  D                    
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGE-KNSEASTSQGCVASTSDDGEILYSEAATSSKGERRLN 288

Query: 374 TEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVLTLK 553
             W++DSG T+HMTP +  F +Y+ +  GSV + N     I G+G + LK   G V  ++
Sbjct: 289 DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDGTVRKIQ 348

Query: 554 NVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVK-RRNLYV 709
            VRHV  L  NL+S   L+D G +     G++K++KGNLV+ KA K   NLY+
Sbjct: 349 GVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYM 401



 Score = 54.7 bits (130), Expect(2) = 8e-30
 Identities = 22/59 (37%), Positives = 36/59 (61%)
 Frame = +3

Query: 750 NAVCGSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKF 926
           +    S+ + T +WH+RLGHMS +GL++L +       K   +PFC+ CV+ K  ++KF
Sbjct: 413 SVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKF 471


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  100 bits (250), Expect(2) = 1e-29
 Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 3/236 (1%)
 Frame = +2

Query: 11  KSKELDLKVNRSSRQNSGEVMHVRGRSQNRFNKPGXXXXXXXXXXXXXXXXXXXXXXXXX 190
           K K   +  N  S  + GE +HVRGR++NR +                            
Sbjct: 179 KEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNE--------KNYDRRGRSKSKPPGNKK 230

Query: 191 XCYECGQSGHYIRECPNKRGNQNF-KQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXX 367
            C  C    H I EC   +  +   K++   ++AS + +  D                  
Sbjct: 231 FCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG---- 286

Query: 368 CETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSV-SLANQKQCNIVGIGDVCLKFDSGYVL 544
              EW++DS C+FH+   +  FS+YK V  G V  + +   C IVGIG V +K D G   
Sbjct: 287 -HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345

Query: 545 TLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRNLYV 709
           TLKNVR++P +  NLIS ++L+ +G +     G++K+ KG+LV  K  +    LYV
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYV 401



 Score = 57.0 bits (136), Expect(2) = 1e-29
 Identities = 27/61 (44%), Positives = 34/61 (55%)
 Frame = +3

Query: 753 AVCGSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPV 932
           AV   E  KT+LWH RLGHMS  G+  L K         S + FC+ C+ GKH +V+F  
Sbjct: 416 AVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNT 475

Query: 933 S 935
           S
Sbjct: 476 S 476


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  100 bits (250), Expect(2) = 1e-29
 Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 3/236 (1%)
 Frame = +2

Query: 11  KSKELDLKVNRSSRQNSGEVMHVRGRSQNRFNKPGXXXXXXXXXXXXXXXXXXXXXXXXX 190
           K K   +  N  S  + GE +HVRGR++NR +                            
Sbjct: 179 KEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNE--------KNYDRRGRSKSKPPGNKK 230

Query: 191 XCYECGQSGHYIRECPNKRGNQNF-KQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXX 367
            C  C    H I EC   +  +   K++   ++AS + +  D                  
Sbjct: 231 FCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG---- 286

Query: 368 CETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSV-SLANQKQCNIVGIGDVCLKFDSGYVL 544
              EW++DS C+FH+   +  FS+YK V  G V  + +   C IVGIG V +K D G   
Sbjct: 287 -HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345

Query: 545 TLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRNLYV 709
           TLKNVR++P +  NLIS ++L+ +G +     G++K+ KG+LV  K  +    LYV
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYV 401



 Score = 57.0 bits (136), Expect(2) = 1e-29
 Identities = 27/61 (44%), Positives = 34/61 (55%)
 Frame = +3

Query: 753 AVCGSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPV 932
           AV   E  KT+LWH RLGHMS  G+  L K         S + FC+ C+ GKH +V+F  
Sbjct: 416 AVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNT 475

Query: 933 S 935
           S
Sbjct: 476 S 476


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 89.7 bits (221), Expect(2) = 1e-29
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 4/176 (2%)
 Frame = +2

Query: 194 CYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXXCE 373
           C+ C + GHYIR+C  K+  ++ +++  A +AS      D                   +
Sbjct: 236 CFYCRKEGHYIRDCFEKKKKESQEKSGDAAVAS------DDGSDGYQSADLLVASNSNTK 289

Query: 374 TEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGI----GDVCLKFDSGYV 541
            +W++DSGC+FH+ P K LF  Y+ V  G V + N   CNIVGI       CL      +
Sbjct: 290 GQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCL---MELL 346

Query: 542 LTLKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVKRRNLYV 709
            +L  VRH P L  NLIS   L+  G   K   G +++ KG  ++ K V    LYV
Sbjct: 347 RSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYV 402



 Score = 67.8 bits (164), Expect(2) = 1e-29
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = +3

Query: 765 SENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSSPP 944
           SE D+T LWH RLGHMS KGL+ L K G  G D++  + FC++C+ GK  + KF      
Sbjct: 418 SEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSKFNKGEHM 477

Query: 945 NKSACSEILEY 977
           +K    ++L+Y
Sbjct: 478 SK----QVLDY 484


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score = 94.4 bits (233), Expect(2) = 2e-29
 Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
 Frame = +2

Query: 377 EWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVLTLKN 556
           +W++D+ CT+HM P +  F+ Y+ V  G+V + +   C + GIG V +K   G + TL +
Sbjct: 131 QWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSD 190

Query: 557 VRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRNLY 706
           VRH+P+L  +LIS  +L+  G +   G G++K+ KG+LV+ KA +K  NLY
Sbjct: 191 VRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 241



 Score = 62.8 bits (151), Expect(2) = 2e-29
 Identities = 30/72 (41%), Positives = 41/72 (56%)
 Frame = +3

Query: 765 SENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSSPP 944
           S +D T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GKH +VKF  S+  
Sbjct: 260 SNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHT 319

Query: 945 NKSACSEILEYL 980
            +     IL+Y+
Sbjct: 320 TEG----ILDYV 327


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score = 94.4 bits (233), Expect(2) = 2e-29
 Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
 Frame = +2

Query: 377 EWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVLTLKN 556
           +W++D+ CT+HM P +  F+ Y+ V  G+V + +   C + GIG V +K   G + TL +
Sbjct: 131 QWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLSD 190

Query: 557 VRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRNLY 706
           VRH+P+L  +LIS  +L+  G +   G G++K+ KG+LV+ KA +K  NLY
Sbjct: 191 VRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 241



 Score = 62.8 bits (151), Expect(2) = 2e-29
 Identities = 30/72 (41%), Positives = 41/72 (56%)
 Frame = +3

Query: 765 SENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSSPP 944
           S +D T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GKH +VKF  S+  
Sbjct: 260 SNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHT 319

Query: 945 NKSACSEILEYL 980
            +     IL+Y+
Sbjct: 320 TEG----ILDYV 327


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score = 99.8 bits (247), Expect(2) = 2e-29
 Identities = 69/235 (29%), Positives = 103/235 (43%), Gaps = 2/235 (0%)
 Frame = +2

Query: 11  KSKELDLKVNRSSRQNSGEVMHVRGRSQNRFNKPGXXXXXXXXXXXXXXXXXXXXXXXXX 190
           K K   +  N  S  + GE +HVRGR++N+ +                            
Sbjct: 181 KEKMKIMVQNDGSSSSKGEALHVRGRTENKTSNE--------KNYDRRGRSKSKPPGNKK 232

Query: 191 XCYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXXC 370
            C  C    H I EC   +  +  K  +   ++  S  V D                   
Sbjct: 233 FCVYCKLKNHNIDECKKVQAKER-KNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAG--- 288

Query: 371 ETEWLVDSGCTFHMTPFKRLFSNYKEVLHGSV-SLANQKQCNIVGIGDVCLKFDSGYVLT 547
             EW++DS C+FH+   +  FS+YK V  G V  + +   C IVGIG V +K D G   T
Sbjct: 289 HDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRT 348

Query: 548 LKNVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRNLYV 709
           LKNVR++P +  NLIS ++L+ +G +     G++K+ KG+LV  K  +    LYV
Sbjct: 349 LKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYV 403



 Score = 57.0 bits (136), Expect(2) = 2e-29
 Identities = 27/61 (44%), Positives = 34/61 (55%)
 Frame = +3

Query: 753 AVCGSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPV 932
           AV   E  KT+LWH RLGHMS  G+  L K         S + FC+ C+ GKH +V+F  
Sbjct: 418 AVTNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNT 477

Query: 933 S 935
           S
Sbjct: 478 S 478


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score = 94.7 bits (234), Expect(2) = 2e-29
 Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
 Frame = +2

Query: 377 EWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVLTLKN 556
           +W++D+ CT+HM P +  F+ Y+ V  G+V + +   C + GIG V +K   G + TL +
Sbjct: 265 QWILDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSD 324

Query: 557 VRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKA-VKRRNLY 706
           VRH+P+L  +LIS  +L+  G +   G G++K+ KG+LV+ KA +K  NLY
Sbjct: 325 VRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLY 375



 Score = 62.0 bits (149), Expect(2) = 2e-29
 Identities = 30/72 (41%), Positives = 41/72 (56%)
 Frame = +3

Query: 765 SENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKFPVSSPP 944
           S +D T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GKH +VKF  S+  
Sbjct: 394 SNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHT 453

Query: 945 NKSACSEILEYL 980
            +     IL+Y+
Sbjct: 454 TEG----ILDYV 461


>emb|CAN61435.1| hypothetical protein VITISV_033767 [Vitis vinifera]
          Length = 1298

 Score =  100 bits (249), Expect(2) = 3e-29
 Identities = 56/172 (32%), Positives = 88/172 (51%)
 Frame = +2

Query: 194 CYECGQSGHYIRECPNKRGNQNFKQNEHANMASTSENVPDVXXXXXXXXXXXXXXXXXCE 373
           C+ CG++GH+ R+C + +     K+NE  +  + +E V D                    
Sbjct: 239 CWNCGKTGHFKRQCKSPK-----KKNEDDSANAVTEEVQDALLLAVDSPLD--------- 284

Query: 374 TEWLVDSGCTFHMTPFKRLFSNYKEVLHGSVSLANQKQCNIVGIGDVCLKFDSGYVLTLK 553
            +W++DSG +FH TP + +  NY     G V LA+    ++VG+GDV +   +G V  L+
Sbjct: 285 -DWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLE 343

Query: 554 NVRHVPDLCSNLISCASLEDDGLEGKWGKGLMKILKGNLVIFKAVKRRNLYV 709
            VRH+PDL  NLIS   L+D+G    +  G  K+ KG  V+ +  K   LY+
Sbjct: 344 KVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTXTLYM 395



 Score = 55.8 bits (133), Expect(2) = 3e-29
 Identities = 27/58 (46%), Positives = 35/58 (60%)
 Frame = +3

Query: 753 AVCGSENDKTDLWHKRLGHMSAKGLEILQKNGYFGKDKLSCMPFCDSCVLGKHSKVKF 926
           AV  +  D T LWH+RLGHMS KG+++L   G   + K      C+SC+LGK  KV F
Sbjct: 404 AVADASTD-TSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSF 460