BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00001365
         (818 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   174   3e-41
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   158   2e-36
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707...   157   4e-36
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu...   156   1e-35
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        154   4e-35
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   154   5e-35
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   153   8e-35
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   153   8e-35
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         153   8e-35
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]           153   8e-35
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     152   1e-34
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi...   152   1e-34
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           151   3e-34
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     150   4e-34
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  150   5e-34
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]               150   5e-34
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]                150   5e-34
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     150   7e-34
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   149   1e-33
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     149   2e-33

>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  174 bits (442), Expect = 3e-41
 Identities = 94/264 (35%), Positives = 150/264 (56%), Gaps = 1/264 (0%)
 Frame = +3

Query: 30  FRTIKKGNQNFKNQYNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEWLIDS 209
           ++ I++     +   N +++LA S+E      ++    +  +V     +    NEW++D+
Sbjct: 235 YKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVV-----TDSIANEWVLDT 289

Query: 210 ACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPD 389
            C+FHM+P K+ F ++KE+ + +V M N+    V GIG I ++   G    L ++R++P+
Sbjct: 290 GCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVILTDVRYMPN 349

Query: 390 LCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPVSFAGNSVNV 569
           +  NLIS   LED     +  +G++KI+KG   I K  KR+ LY+  G  V+  G S + 
Sbjct: 350 MTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDG--VTEEGESHSS 407

Query: 570 VQ-EDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSPF 746
            + +D+T LWH RLGHMS KG+EIL K GC   +V+  + FC+ CV GKQH+V F     
Sbjct: 408 AEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHRVSFA---- 463

Query: 747 PNQSVCTDILEYLHADVWGRMSRP 818
           P Q V  + L Y+H+D+WG    P
Sbjct: 464 PAQHVTKEKLAYVHSDLWGSPHNP 487


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  158 bits (400), Expect = 2e-36
 Identities = 92/264 (34%), Positives = 142/264 (53%), Gaps = 7/264 (2%)
 Frame = +3

Query: 33  RTIKKGNQNFKNQY---NDQANLASSSENAGDVFMVTGI-CDVPIVNSVHSSSVCENEWL 200
           R  +  NQ  K Q     DQ+  A   E  G   +VT    D  ++ +    +   ++W+
Sbjct: 208 RRTQTTNQEIKAQVATVGDQSPEAGKKEEEGKAAVVTDEKSDAELLVAYVGCAQTSDQWI 267

Query: 201 IDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNIRH 380
           +D+ACT+HM P ++ F+ Y+ V+   V M ++  C V GIG + +K   G   TL ++RH
Sbjct: 268 LDTACTYHMCPNRDWFATYETVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRH 327

Query: 381 VPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV--SFA 551
           +P+L  +LIS   L+    +   G+G++K+ KGSLV+ KA +K  NLY   G  +  + A
Sbjct: 328 IPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVA 387

Query: 552 GNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKF 731
             S ++   D T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GK  +VKF
Sbjct: 388 AVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKF 447

Query: 732 PVSPFPNQSVCTDILEYLHADVWG 803
             S    +     IL+Y+H+D+WG
Sbjct: 448 NTSTHTTEG----ILDYVHSDLWG 467


>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
          Length = 1773

 Score =  157 bits (397), Expect = 4e-36
 Identities = 91/255 (35%), Positives = 135/255 (52%), Gaps = 2/255 (0%)
 Frame = +3

Query: 45  KGNQNFKNQYNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEWLIDSACTFH 224
           KGN   K +  +Q   A +++N  D  ++     V     V +S    +EWL+D+ CT+H
Sbjct: 201 KGNYKPKGKQEEQGKAAVATDNKPDAELL-----VAYAGCVQTS----DEWLLDTGCTYH 251

Query: 225 MSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPDLCNNL 404
           M P ++ F+ Y+ V+   V M +   C V G+G I +K   G   TL ++RH+P L  NL
Sbjct: 252 MCPNRDWFTTYEPVQGGNVLMGDNTPCKVAGVGTIQIKMFDGCIRTLSDVRHIPSLKRNL 311

Query: 405 ISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPVSFAGNSVNVVQE- 578
           IS + L+        G+G++K+ KGSLV+ KA +K  +LY   G   +  GN   V    
Sbjct: 312 ISLSTLDRKGYRYSGGDGILKVTKGSLVVMKADIKNADLYHLQG--TTIVGNVAAVTDSL 369

Query: 579 DKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSPFPNQS 758
             +DLWH RLGHMS  GL  L K G      +  + FC+ C+ GK  +VKF  S    + 
Sbjct: 370 SNSDLWHMRLGHMSEIGLAELSKRGLLDGQNIGKLKFCEHCIFGKHKRVKFTTSTHTTEG 429

Query: 759 VCTDILEYLHADVWG 803
               IL+Y+H+D+WG
Sbjct: 430 ----ILDYVHSDLWG 440


>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 867

 Score =  156 bits (394), Expect = 1e-35
 Identities = 86/228 (37%), Positives = 124/228 (54%), Gaps = 3/228 (1%)
 Frame = +3

Query: 144 DVPIVNSVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIG 323
           D+ ++ S+ S+S+  +EW++DS CT+HM P ++ F  ++E+    V M N+  C   GIG
Sbjct: 209 DISLIVSL-SASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIG 267

Query: 324 DICLKFDSGYAYTLKNIRHVPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKAV 503
            I L+   G    L+++R+VP L  NLIS  ALE   L     +G++K   G+LV+ K V
Sbjct: 268 SIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGV 327

Query: 504 KRNNLYVCIGKPV---SFAGNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVL 674
            +NNLY   G  V     A  S +    + T LWH RLGH   K L+I  K G       
Sbjct: 328 MKNNLYYYQGSTVVGTVAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQGLLKGTKA 387

Query: 675 SCMPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWGRMSRP 818
             + FC+ CVLGKQ +VKF  +    +     IL+Y+H+DVWG    P
Sbjct: 388 CKLEFCEHCVLGKQRRVKFGTAIHNTKG----ILDYVHSDVWGPAKTP 431


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  154 bits (389), Expect = 4e-35
 Identities = 80/208 (38%), Positives = 123/208 (59%), Gaps = 3/208 (1%)
 Frame = +3

Query: 189 NEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLK 368
           ++W++D+ACT+HM P ++ F+ Y+ V+   V M ++  C V GIG + +K   G   TL 
Sbjct: 298 DQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLS 357

Query: 369 NIRHVPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV- 542
           ++RH+P+L  +LIS   L+    +   G+G++K+ KGSLV+ KA +K  NLY   G  + 
Sbjct: 358 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTTIL 417

Query: 543 -SFAGNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQH 719
            + A  S ++   D T+LWH RLGHMS  GL  L K G      +S + FC+ C+ GK  
Sbjct: 418 GNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHK 477

Query: 720 KVKFPVSPFPNQSVCTDILEYLHADVWG 803
           +VKF  S    +     IL+Y+H+D+WG
Sbjct: 478 RVKFNTSTHTTEG----ILDYVHSDLWG 501


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77549942|gb|ABA92739.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 1373

 Score =  154 bits (388), Expect = 5e-35
 Identities = 90/263 (34%), Positives = 140/263 (53%), Gaps = 5/263 (1%)
 Frame = +3

Query: 45  KGNQNFKNQYNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEWLIDSACTFH 224
           K  +N K+     A+ A+S +++GD  +V   C               +EW++DSAC+FH
Sbjct: 251 KERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG-----------HDEWILDSACSFH 299

Query: 225 MSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPDLCNN 401
           +   +N FS+YK V K   V M ++  C + GIG + +K D G   TLKN+R++P +  N
Sbjct: 300 ICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRN 359

Query: 402 LISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPVSFAGNSVNVVQE 578
           LIS + L+ +  +    +G++K+ KGSLV  K  V    LYV  G  ++ + ++   +  
Sbjct: 360 LISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITN 419

Query: 579 D---KTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSPFP 749
           D   KT+LWH RLGHMS  G+  L K         S + FC+ C+ GK  +V+F  S   
Sbjct: 420 DEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHT 479

Query: 750 NQSVCTDILEYLHADVWGRMSRP 818
            +      L+Y+HAD+WG   +P
Sbjct: 480 TKGT----LDYVHADLWGPSKKP 498


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  153 bits (386), Expect = 8e-35
 Identities = 90/263 (34%), Positives = 140/263 (53%), Gaps = 5/263 (1%)
 Frame = +3

Query: 45  KGNQNFKNQYNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEWLIDSACTFH 224
           K  +N K+     A+ A+S +++GD  +V   C               +EW++DSAC+FH
Sbjct: 251 KERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG-----------HDEWILDSACSFH 299

Query: 225 MSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPDLCNN 401
           +   +N FS+YK V K   V M ++  C + GIG + +K D G   TLKN+R++P +  N
Sbjct: 300 ICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRN 359

Query: 402 LISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPVSFAGNSVNVVQE 578
           LIS + L+ +  +    +G++K+ KGSLV  K  +    LYV  G  ++ + ++   V  
Sbjct: 360 LISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTN 419

Query: 579 D---KTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSPFP 749
           D   KT+LWH RLGHMS  G+  L K         S + FC+ C+ GK  +V+F  S   
Sbjct: 420 DEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHT 479

Query: 750 NQSVCTDILEYLHADVWGRMSRP 818
            +      L+Y+HAD+WG   +P
Sbjct: 480 TKGT----LDYVHADLWGPSKKP 498


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1333

 Score =  153 bits (386), Expect = 8e-35
 Identities = 90/263 (34%), Positives = 140/263 (53%), Gaps = 5/263 (1%)
 Frame = +3

Query: 45  KGNQNFKNQYNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEWLIDSACTFH 224
           K  +N K+     A+ A+S +++GD  +V   C               +EW++DSAC+FH
Sbjct: 251 KERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAG-----------HDEWILDSACSFH 299

Query: 225 MSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPDLCNN 401
           +   +N FS+YK V K   V M ++  C + GIG + +K D G   TLKN+R++P +  N
Sbjct: 300 ICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRN 359

Query: 402 LISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPVSFAGNSVNVVQE 578
           LIS + L+ +  +    +G++K+ KGSLV  K  +    LYV  G  ++ + ++   V  
Sbjct: 360 LISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTN 419

Query: 579 D---KTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSPFP 749
           D   KT+LWH RLGHMS  G+  L K         S + FC+ C+ GK  +V+F  S   
Sbjct: 420 DEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHT 479

Query: 750 NQSVCTDILEYLHADVWGRMSRP 818
            +      L+Y+HAD+WG   +P
Sbjct: 480 TKGT----LDYVHADLWGPSKKP 498


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  153 bits (386), Expect = 8e-35
 Identities = 79/208 (37%), Positives = 122/208 (58%), Gaps = 3/208 (1%)
 Frame = +3

Query: 189 NEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLK 368
           ++W++D+ACT+HM P ++ F+ Y+ V+   V M ++  C V GIG + +K   G   TL 
Sbjct: 130 DQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLS 189

Query: 369 NIRHVPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV- 542
           ++RH+P+L  +LIS   L+    +   G+G++K+ KGSLV+ KA +K  NLY   G  + 
Sbjct: 190 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 249

Query: 543 -SFAGNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQH 719
            + A  S ++   D T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GK  
Sbjct: 250 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 309

Query: 720 KVKFPVSPFPNQSVCTDILEYLHADVWG 803
           +VKF  S    +     IL+Y+H+D+WG
Sbjct: 310 RVKFNTSTHTTEG----ILDYVHSDLWG 333


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa Indica Group]
          Length = 944

 Score =  153 bits (386), Expect = 8e-35
 Identities = 79/208 (37%), Positives = 122/208 (58%), Gaps = 3/208 (1%)
 Frame = +3

Query: 189 NEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLK 368
           ++W++D+ACT+HM P ++ F+ Y+ V+   V M ++  C V GIG + +K   G   TL 
Sbjct: 130 DQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGIVQIKMFDGCISTLS 189

Query: 369 NIRHVPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV- 542
           ++RH+P+L  +LIS   L+    +   G+G++K+ KGSLV+ KA +K  NLY   G  + 
Sbjct: 190 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 249

Query: 543 -SFAGNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQH 719
            + A  S ++   D T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GK  
Sbjct: 250 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 309

Query: 720 KVKFPVSPFPNQSVCTDILEYLHADVWG 803
           +VKF  S    +     IL+Y+H+D+WG
Sbjct: 310 RVKFNTSTHTTEG----ILDYVHSDLWG 333


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  152 bits (385), Expect = 1e-34
 Identities = 79/208 (37%), Positives = 122/208 (58%), Gaps = 3/208 (1%)
 Frame = +3

Query: 189 NEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLK 368
           ++W++D+ACT+HM P ++ F+ Y+ V+   V M ++  C V GIG + +K   G   TL 
Sbjct: 207 DQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLL 266

Query: 369 NIRHVPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV- 542
           ++RH+P+L  +LIS   L+    +   G+G++K+ KGSLV+ KA +K  NLY   G  + 
Sbjct: 267 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRGTTIL 326

Query: 543 -SFAGNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQH 719
            + A  S ++   D T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GK  
Sbjct: 327 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 386

Query: 720 KVKFPVSPFPNQSVCTDILEYLHADVWG 803
           +VKF  S    +     IL+Y+H+D+WG
Sbjct: 387 RVKFNTSTHTTEG----ILDYVHSDLWG 410


>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 838

 Score =  152 bits (385), Expect = 1e-34
 Identities = 76/211 (36%), Positives = 123/211 (58%)
 Frame = +3

Query: 186 ENEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTL 365
           +NEW++D+ C+FHM+P ++ F  + E +   V MAN+    + GIG I ++ D      L
Sbjct: 302 DNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDDNTTVLL 361

Query: 366 KNIRHVPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKAVKRNNLYVCIGKPVS 545
           KN+R+VP +  NLIS   LED     +   G +K++KG + + K  K   LY+  G  V+
Sbjct: 362 KNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGKKVGTLYLLQGVVVT 421

Query: 546 FAGNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKV 725
              N+V    +D++ +WH RL HMS + +++L K GC  ++ ++ + FC+ CV GK H+V
Sbjct: 422 GNANAV-TSSKDESKIWHSRLCHMSQRNIDVLIKKGCLQAEKINGLEFCEDCVYGKTHRV 480

Query: 726 KFPVSPFPNQSVCTDILEYLHADVWGRMSRP 818
            F  +    + V  + LEY+H+D+WG  S P
Sbjct: 481 GFGSA----KHVTREKLEYIHSDLWGAPSVP 507


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  151 bits (381), Expect = 3e-34
 Identities = 90/263 (34%), Positives = 138/263 (52%), Gaps = 5/263 (1%)
 Frame = +3

Query: 45  KGNQNFKNQYNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEWLIDSACTFH 224
           K  +N K+     A+ A S +++GD  +V   C               +EW++DSAC+FH
Sbjct: 253 KERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAG-----------HDEWILDSACSFH 301

Query: 225 MSPFKNLFSNYKEV-KNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPDLCNN 401
           +   +N FS+YK V K   V M ++  C + GIG + +K D G   TLKN+R++P +  N
Sbjct: 302 ICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRN 361

Query: 402 LISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPVSFAGNSVNVVQE 578
           LIS + L+ +  +    +G++K+ KGSLV  K  +    LYV  G  +  + ++   V  
Sbjct: 362 LISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVTN 421

Query: 579 D---KTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSPFP 749
           D   KT+LWH RLGHMS  G+  L K         S + FC+ C+ GK  +V+F  S   
Sbjct: 422 DEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHT 481

Query: 750 NQSVCTDILEYLHADVWGRMSRP 818
            +      L+Y+HAD+WG   +P
Sbjct: 482 TKGT----LDYVHADLWGPSKKP 500


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  150 bits (380), Expect = 4e-34
 Identities = 85/251 (33%), Positives = 133/251 (52%), Gaps = 1/251 (0%)
 Frame = +3

Query: 54  QNFKNQYNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEWLIDSACTFHMSP 233
           +N K     +A ++  S    +V +     D  ++ ++ +SS     W +D+ACTFH   
Sbjct: 217 RNCKQWKEKKAQMSGESSQLANVVIGYNDEDGELL-AISTSSGAPRHWTLDTACTFHTCA 275

Query: 234 FKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPDLCNNLISC 413
            ++ F  YKE     V M N+    + GIG + ++   G    L N+RH P L  NLIS 
Sbjct: 276 HRDWFDTYKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGLNRNLISL 335

Query: 414 AALEDDRLEGRFGNGLMKILKGSLVIFK-AVKRNNLYVCIGKPVSFAGNSVNVVQEDKTD 590
           + ++      +  NG++K+ KG +V  K A++ +N+Y   G  V   G +    +EDKT+
Sbjct: 336 STMDRVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVE--GGAGVCTEEDKTE 393

Query: 591 LWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSPFPNQSVCTD 770
           LW +RLGHMS +GL+ LHK       + + + FC  C LGKQ +V F +S   N+S    
Sbjct: 394 LWRRRLGHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENKS--KG 451

Query: 771 ILEYLHADVWG 803
           +L+Y+H DVWG
Sbjct: 452 VLDYIHTDVWG 462


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  150 bits (379), Expect = 5e-34
 Identities = 88/264 (33%), Positives = 140/264 (53%), Gaps = 2/264 (0%)
 Frame = +3

Query: 15  HLKIYFRTIKKGNQNFKNQYNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENE 194
           HLK    + KK  +        Q  +AS+S++   ++    +       S    +   + 
Sbjct: 238 HLKKDCWSNKKSGEKSSEASTSQGCVASTSDDGEVLYSEAAV-------STKGKNRLTDV 290

Query: 195 WLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNI 374
           W++DS  T+HM+P ++ F  Y+ V    V M N+    + GIG + +K   G   TL+ +
Sbjct: 291 WIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDGTIRTLQEV 350

Query: 375 RHVPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKAVK-RNNLYVCIGKPVSFA 551
           RHV +L  NL+S   L+D   +     G++K++KGSLV+ KA K   NLY+ +G     A
Sbjct: 351 RHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYMLLGDTWQMA 410

Query: 552 GNSVNV-VQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVK 728
             SV V  QE+ T +WH+RLGHMS +GL++L +           +PFC+ CV+ KQH++K
Sbjct: 411 DASVAVGSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLKSVSLPFCEHCVISKQHRLK 470

Query: 729 FPVSPFPNQSVCTDILEYLHADVW 800
           F  S   ++     IL+ +H+DVW
Sbjct: 471 FAKSTARSK----HILDLIHSDVW 490


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
          Length = 1037

 Score =  150 bits (379), Expect = 5e-34
 Identities = 83/237 (35%), Positives = 132/237 (55%), Gaps = 4/237 (1%)
 Frame = +3

Query: 105 ENAGDVFMVTGI-CDVPIVNSVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFV 281
           E+ G   +VT    D  ++ +    +   ++W++D+ACT+HM P ++ F+ Y+ V+   V
Sbjct: 86  EDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTV 145

Query: 282 SMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPDLCNNLISCAALEDDRLEGRFGNGL 461
            M ++  C V GIG + +K   G   TL ++RH+P+L  +LIS   L+    +   G+G+
Sbjct: 146 LMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGI 205

Query: 462 MKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGNSVNVVQEDKTDLWHKRLGHMSSKGL 632
           +K+ KGSLV+ KA +K  NLY   G  +  + A  S ++   D T+LWH RLGHMS  GL
Sbjct: 206 LKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGL 265

Query: 633 EILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWG 803
             L   G      +  + FC+ C+ GK  +VKF  S    +     IL+Y+H+D+WG
Sbjct: 266 AELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWG 318


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
          Length = 1205

 Score =  150 bits (379), Expect = 5e-34
 Identities = 83/237 (35%), Positives = 132/237 (55%), Gaps = 4/237 (1%)
 Frame = +3

Query: 105 ENAGDVFMVTGI-CDVPIVNSVHSSSVCENEWLIDSACTFHMSPFKNLFSNYKEVKNSFV 281
           E+ G   +VT    D  ++ +    +   ++W++D+ACT+HM P ++ F+ Y+ V+   V
Sbjct: 254 EDEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTV 313

Query: 282 SMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPDLCNNLISCAALEDDRLEGRFGNGL 461
            M ++  C V GIG + +K   G   TL ++RH+P+L  +LIS   L+    +   G+G+
Sbjct: 314 LMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGI 373

Query: 462 MKILKGSLVIFKA-VKRNNLYVCIGKPV--SFAGNSVNVVQEDKTDLWHKRLGHMSSKGL 632
           +K+ KGSLV+ KA +K  NLY   G  +  + A  S ++   D T+LWH RLGHMS  GL
Sbjct: 374 LKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGL 433

Query: 633 EILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSPFPNQSVCTDILEYLHADVWG 803
             L   G      +  + FC+ C+ GK  +VKF  S    +     IL+Y+H+D+WG
Sbjct: 434 AELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEG----ILDYVHSDLWG 486


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  150 bits (378), Expect = 7e-34
 Identities = 78/211 (36%), Positives = 123/211 (58%), Gaps = 3/211 (1%)
 Frame = +3

Query: 189 NEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLK 368
           ++W++D+ACT+HM   ++ F+ Y+ V+   V M ++  C V G+  + +K   G   TL 
Sbjct: 298 DQWILDTACTYHMCLNRDWFATYEAVQGGTVLMGDDTPCEVAGVETVQIKMFDGCIRTLS 357

Query: 369 NIRHVPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV- 542
           ++RH+P+L  +LIS   L+    +   G+G++K+ KGSLV+ KA +K  NLY   G  + 
Sbjct: 358 DVRHIPNLKRSLISLCTLDRKVYKYSGGDGILKVTKGSLVVMKADIKSANLYHVRGTTIL 417

Query: 543 -SFAGNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQH 719
            + A  S ++   D T+LWH RLGHMS  GL  L K G      +  + FC+ C+ GK  
Sbjct: 418 GNIAAVSDSLYNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHK 477

Query: 720 KVKFPVSPFPNQSVCTDILEYLHADVWGRMS 812
           +VKF  S    +S    IL+Y+H+D+WG +S
Sbjct: 478 RVKFNTSTHTTES----ILDYVHSDLWGLLS 504


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score =  149 bits (376), Expect = 1e-33
 Identities = 96/262 (36%), Positives = 131/262 (50%), Gaps = 6/262 (2%)
 Frame = +3

Query: 42  KKGNQNFKNQYNDQANLASSSENAGDVFMVTGICDVPIVNSVHSSSVCENEWLIDSACTF 221
           +KG      Q ND    A    N   V  +           +H S   E+EW++D+A + 
Sbjct: 249 RKGKGETSGQKNDDNTAAMVQNNDNVVLFIN-----EEEECMHLSGP-ESEWVVDTAASH 302

Query: 222 HMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLKNIRHVPDLCNN 401
           H +P ++LF  Y       V M N     + GIGDIC+K + G    LK++RHVPDL  N
Sbjct: 303 HATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMN 362

Query: 402 LISCAALEDDRLEGRFGNGLMKILKGSLVIFKAVKRNNLY-----VCIGKPVSFAGNSVN 566
           LIS  AL+ D  E  F N   ++ KGSLVI K V R  LY     +C G+        +N
Sbjct: 363 LISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRTNAEICQGE--------LN 414

Query: 567 VVQED-KTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQHKVKFPVSP 743
             Q++   DLWHKR+GHMS KGL+IL K         + +  CD C+ GKQH+V F  S 
Sbjct: 415 AAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTS- 473

Query: 744 FPNQSVCTDILEYLHADVWGRM 809
                   +IL+ +++DV G M
Sbjct: 474 ---SERKLNILDLVYSDVCGPM 492


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  149 bits (375), Expect = 2e-33
 Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
 Frame = +3

Query: 189 NEWLIDSACTFHMSPFKNLFSNYKEVKNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLK 368
           ++W++D+A T+HM P ++ F+ Y+ ++   V M ++  C V GIG + +K   GY  TL 
Sbjct: 333 DQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRTLS 392

Query: 369 NIRHVPDLCNNLISCAALEDDRLEGRFGNGLMKILKGSLVIFKA-VKRNNLYVCIGKPV- 542
           ++RH+P+L  +LIS   L+    +   G+G++K+ KGSLV+ KA +K  NLY   G  + 
Sbjct: 393 DVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTTIL 452

Query: 543 -SFAGNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKVGCFGSDVLSCMPFCDSCVLGKQH 719
            + A  S ++   D T+LWH RLGHMS  GL  L K        +  + FC+ C+ GK  
Sbjct: 453 GNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGKHK 512

Query: 720 KVKFPVSPFPNQSVCTDILEYLHADVWG 803
           +VKF  S    +     IL+Y+H+D+WG
Sbjct: 513 RVKFNTSTHTTEG----ILDYVHSDLWG 536