BLASTX nr result
ID: Rehmannia26_contig00001364
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00001364
(837 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK29467.1| polyprotein-like [Solanum chilense] 156 8e-36
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 154 4e-35
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 150 5e-34
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 144 3e-32
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 144 5e-32
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 144 5e-32
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 141 3e-31
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 141 3e-31
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 139 2e-30
gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vu... 136 1e-29
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 135 1e-29
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 135 2e-29
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 134 3e-29
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 134 4e-29
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 134 4e-29
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 133 7e-29
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 133 9e-29
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 132 1e-28
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 132 2e-28
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 132 2e-28
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 156 bits (395), Expect = 8e-36
Identities = 88/220 (40%), Positives = 121/220 (55%), Gaps = 5/220 (2%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 356
CYNC + GH+ R+CPN K + +S+ Q N +T+ MV DV ++ + +
Sbjct: 233 CYNCDQPGHFKRDCPNPKRGKGESSGQKNDDNTAA------MVQNNDDVVLLINEEEECM 286
Query: 357 ----CENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 524
E+EW++D+A ++H +P ++LF Y V M N + GIGDIC K + G
Sbjct: 287 HLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKTNVG 346
Query: 525 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVCV 704
LK+VRHVPDL NLIS AL+ DG E F N ++ KG+LVI K V R LY
Sbjct: 347 CTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKGVARGTLY--- 403
Query: 705 GKPVSFAQNSVNVV-QEDKTDLWHKRLGHMSSKGLEILHK 821
Q +N +E+ DLWHKR+GH S KGL+IL K
Sbjct: 404 RTNAEICQGELNAAHEENSADLWHKRMGHTSEKGLQILSK 443
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
TNT 1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 154 bits (389), Expect = 4e-35
Identities = 90/220 (40%), Positives = 117/220 (53%), Gaps = 5/220 (2%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPN-KKGN---QNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVH 344
CYNC + GH+ R+CPN +KG Q ND A N + + +H
Sbjct: 232 CYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFIN-----EEEECMH 286
Query: 345 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 524
S E+EW++D+A + H +P ++LF Y V M N + GIGDIC+K + G
Sbjct: 287 LSGP-ESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVG 345
Query: 525 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVCV 704
LK+VRHVPDL NLIS AL+ DG E F N ++ KGSLVI K V R LY
Sbjct: 346 CTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLY--- 402
Query: 705 GKPVSFAQNSVNVVQED-KTDLWHKRLGHMSSKGLEILHK 821
Q +N Q++ DLWHKR+GHMS KGL+IL K
Sbjct: 403 RTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAK 442
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 150 bits (379), Expect = 5e-34
Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 5/223 (2%)
Frame = +3
Query: 177 CYNCGEVGHYIREC-----PNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSV 341
C+ CG+ GH+ ++C NK Q N +++LA ++E ++ + +V
Sbjct: 221 CWICGKEGHFKKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLVVTDS 280
Query: 342 HSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDS 521
+ NEW++D+ C+FHM+P K+ F ++KE+ + +V M N+ V GIG I ++
Sbjct: 281 IA-----NEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSD 335
Query: 522 GYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVC 701
G L +VR++P++ NLIS LED G + +G++KI+KG I K KR+ LY+
Sbjct: 336 GSQVILTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYIL 395
Query: 702 VGKPVSFAQNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKAGC 830
G +S V +D+T LWH RLGHMS KG+EIL K GC
Sbjct: 396 DGVTEEGESHSSAEV-KDETALWHSRLGHMSQKGMEILVKKGC 437
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 144 bits (364), Expect = 3e-32
Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 10/280 (3%)
Frame = +3
Query: 12 NKGGRQNSGEVMHVRGRSQYRFDNQQKLDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCG 191
N G + GE +HVRGR++ R N++ D C C
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 236
Query: 192 EVGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 356
H I EC + + ++ A+ A++ +++GD +V C
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC-----------VA 285
Query: 357 CENEWLIDSACTFHMSPFKNLFSNYKEM-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 533
+EW++DSAC+FH+ +N FS+YK + K V M ++ C + GIG + +K D G
Sbjct: 286 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345
Query: 534 TLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKA-VKRNNLYVCVGK 710
TLKNVR++P + NLIS + L+ +G + +GV+K+ KGSLV K V LYV G
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGC 405
Query: 711 PVSFAQNSVNVVQED---KTDLWHKRLGHMSSKGLEILHK 821
++ + ++ + D KT+LWH RLGHMS G+ L K
Sbjct: 406 TLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMK 445
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 144 bits (362), Expect = 5e-32
Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 10/280 (3%)
Frame = +3
Query: 12 NKGGRQNSGEVMHVRGRSQYRFDNQQKLDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCG 191
N G + GE +HVRGR++ R N++ D C C
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 236
Query: 192 EVGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 356
H I EC + + ++ A+ A++ +++GD +V C
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC-----------VA 285
Query: 357 CENEWLIDSACTFHMSPFKNLFSNYKEM-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 533
+EW++DSAC+FH+ +N FS+YK + K V M ++ C + GIG + +K D G
Sbjct: 286 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345
Query: 534 TLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKA-VKRNNLYVCVGK 710
TLKNVR++P + NLIS + L+ +G + +GV+K+ KGSLV K + LYV G
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGC 405
Query: 711 PVSFAQNSVNVVQED---KTDLWHKRLGHMSSKGLEILHK 821
++ + ++ V D KT+LWH RLGHMS G+ L K
Sbjct: 406 TLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMK 445
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 144 bits (362), Expect = 5e-32
Identities = 89/280 (31%), Positives = 137/280 (48%), Gaps = 10/280 (3%)
Frame = +3
Query: 12 NKGGRQNSGEVMHVRGRSQYRFDNQQKLDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCG 191
N G + GE +HVRGR++ R N++ D C C
Sbjct: 188 NDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 236
Query: 192 EVGHYIRECPNKKGNQNQSNDQ-----ANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 356
H I EC + + ++ A+ A++ +++GD +V C
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGC-----------VA 285
Query: 357 CENEWLIDSACTFHMSPFKNLFSNYKEM-KNSFVSMANEKKCNVFGIGDICLKFDSGYAY 533
+EW++DSAC+FH+ +N FS+YK + K V M ++ C + GIG + +K D G
Sbjct: 286 GHDEWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTR 345
Query: 534 TLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKA-VKRNNLYVCVGK 710
TLKNVR++P + NLIS + L+ +G + +GV+K+ KGSLV K + LYV G
Sbjct: 346 TLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGC 405
Query: 711 PVSFAQNSVNVVQED---KTDLWHKRLGHMSSKGLEILHK 821
++ + ++ V D KT+LWH RLGHMS G+ L K
Sbjct: 406 TLTGSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMK 445
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 141 bits (356), Expect = 3e-31
Identities = 91/277 (32%), Positives = 137/277 (49%), Gaps = 7/277 (2%)
Frame = +3
Query: 12 NKGGRQNSGEVMHVRGRSQYRFDNQQKLDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCG 191
N G + GE +HVRGR++ + N++ D C C
Sbjct: 190 NDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSK-----------SKPPGNKKFCVYCK 238
Query: 192 EVGHYIRECPN--KKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTVCEN 365
H I EC K +N+ + + ++AS + + D +G C V V +
Sbjct: 239 LKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDD----SGDCLVVFAGCVAG----HD 290
Query: 366 EWLIDSACTFHMSPFKNLFSNYKEM-KNSFVSMANEKKCNVFGIGDICLKFDSGYAYTLK 542
EW++DSAC+FH+ +N FS+YK + K V M ++ C + GIG + +K D G TLK
Sbjct: 291 EWILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLK 350
Query: 543 NVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKA-VKRNNLYVCVGKPVS 719
NVR++P + NLIS + L+ +G + +GV+K+ KGSLV K + LYV G +
Sbjct: 351 NVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLP 410
Query: 720 FAQNSVNVVQED---KTDLWHKRLGHMSSKGLEILHK 821
+ ++ V D KT+LWH RLGHMS G+ L K
Sbjct: 411 GSDSAAAAVTNDEPSKTNLWHMRLGHMSHLGMTELMK 447
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 141 bits (355), Expect = 3e-31
Identities = 80/219 (36%), Positives = 121/219 (55%), Gaps = 6/219 (2%)
Frame = +3
Query: 177 CYNCGEVGHYIREC-PNKKGNQNQSN---DQANLASTSENAGDIFMVTGICDVPIVNSVH 344
CYNCG+ GH ++C NKK + S Q +ASTS++ ++ + S
Sbjct: 230 CYNCGKRGHLKKDCWSNKKSGEKSSEASTSQGCVASTSDDGEVLYSEAAV-------STK 282
Query: 345 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 524
+ W++DS T+HM+P ++ F Y+ + V M N+ + GIG + +K G
Sbjct: 283 GKNRLTDVWIVDSGATWHMTPRRDWFCTYEPVSEGNVFMGNDHALEIVGIGTVKIKMYDG 342
Query: 525 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVK-RNNLYVC 701
TL+ VRHV +L NL+S L+D G + G++K++KGSLV+ KA K NLY+
Sbjct: 343 TIRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKAKKVAANLYML 402
Query: 702 VGKPVSFAQNSVNV-VQEDKTDLWHKRLGHMSSKGLEIL 815
+G A SV V QE+ T +WH+RLGHMS +GL++L
Sbjct: 403 LGDTWQMADASVAVGSQEETTMMWHRRLGHMSERGLKVL 441
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 139 bits (349), Expect = 2e-30
Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
Frame = +3
Query: 177 CYNCGEVGHYIREC-----PNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSV 341
C+ CG+ GH+ ++C NKKGN ++ + +N+ + +A + + S
Sbjct: 244 CWVCGKEGHFKKQCYVWKEKNKKGNNSEKGESSNVIGQAADAAALAVRE--------ESN 295
Query: 342 HSSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDS 521
+ +NEW++D+ C+FHM+P ++ F + E + V MAN+ + GIG I ++ D
Sbjct: 296 ADNQEVDNEWIMDTGCSFHMTPRRDWFVEFDESQTGRVKMANQTYSEIKGIGSIRIQNDD 355
Query: 522 GYAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVC 701
LKNVR+VP + NLIS LED G + G +K++KG + + K K LY+
Sbjct: 356 NTTVLLKNVRYVPSMSKNLISMGTLEDQGCWFQSKAGTLKVVKGCMTLLKGKKVGTLYLL 415
Query: 702 VGKPVSFAQNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKAGC 830
G V+ N+V +D++ +WH RL HMS + +++L K GC
Sbjct: 416 QGVVVTGNANAV-TSSKDESKIWHSRLCHMSQRNIDVLIKKGC 457
>gb|AER13159.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 867
Score = 136 bits (342), Expect = 1e-29
Identities = 76/220 (34%), Positives = 111/220 (50%), Gaps = 3/220 (1%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 356
C C E GH+ ++CP + + D S+ DI ++ + S+++
Sbjct: 171 CAFCHEKGHWKKDCPKLQKKEKVLQDANVAECKSDVESDISLIVSL----------SASL 220
Query: 357 CENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSGYAYT 536
+EW++DS CT+HM P ++ F ++E+ V M N+ C GIG I L+ G
Sbjct: 221 YLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRI 280
Query: 537 LKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVCVGKPV 716
L++VR+VP L NLIS ALE GL +G++K G+LV+ K V +NNLY G V
Sbjct: 281 LRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATSGALVMLKGVMKNNLYYYQGSTV 340
Query: 717 ---SFAQNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKAG 827
A S + + T LWH RLGH K L+I K G
Sbjct: 341 VGTVAAATSSSKKDAEATKLWHMRLGHAGEKSLQIFTKQG 380
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 135 bits (341), Expect = 1e-29
Identities = 81/220 (36%), Positives = 122/220 (55%), Gaps = 5/220 (2%)
Frame = +3
Query: 177 CYNCGEVGH---YIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVN-SVH 344
C+ CG+ H Y + +K N+ D N +T D+ + CD ++N + H
Sbjct: 231 CHYCGKKSHIKKYSFKWKREKKQDNKDGDTGNQVATVR--ADLLVA---CDDNVINVACH 285
Query: 345 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 524
+T W++DS +H++P K F++Y + M N+ + V G G +CL+ +G
Sbjct: 286 ETT-----WIVDSGAAYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNG 340
Query: 525 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVCV 704
LKNV+H PD+ NLIS L+DDG FG+G KI KGSLV+ + K +NLY
Sbjct: 341 TKLVLKNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLY--- 397
Query: 705 GKPVSFAQNSVNVVQED-KTDLWHKRLGHMSSKGLEILHK 821
S + +SVNVV+++ ++LWHKRLGHMS KG++ L K
Sbjct: 398 SLQSSVSDDSVNVVEKECASELWHKRLGHMSVKGIDYLAK 437
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 135 bits (340), Expect = 2e-29
Identities = 76/219 (34%), Positives = 121/219 (55%), Gaps = 6/219 (2%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPNKKGNQNQSND----QANLASTSENAGDIFMVTGICDVPIVNSVH 344
CY CG GH +EC N K N ++++ Q +ASTS++ ++ S
Sbjct: 230 CYGCGMKGHVKKECWNNKKNGEKNSEATTSQGCVASTSDDGEILYSEAA-------TSSE 282
Query: 345 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 524
+ W++DS T+HM+P ++ F +Y+ + V M N+ + G+G I LK G
Sbjct: 283 GERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDG 342
Query: 525 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVK-RNNLYVC 701
++ VRHV L NL+S L+D G + +G++K++KG+LV+ KA K +NLY+
Sbjct: 343 TVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKAEKITSNLYML 402
Query: 702 VGKPVSFAQNSVNVV-QEDKTDLWHKRLGHMSSKGLEIL 815
+G + A SV QE+ T +WH+RLGHMS +GL++L
Sbjct: 403 LGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVL 441
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 134 bits (338), Expect = 3e-29
Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 1/214 (0%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 356
CYNCG+ GH ++C N N SN Q N+ASTS++ + C+ I
Sbjct: 228 CYNCGKKGHLKKDCWNLAQN---SNPQGNVASTSDDGSAL-----CCEASIAREGRKRFA 279
Query: 357 CENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSGYAYT 536
+ WLIDS T+HM+ K F +Y+ + V ++ + GIG I LK G T
Sbjct: 280 --DIWLIDSGATYHMTSRKEWFHHYEPISGGSVYSCDDHALEIIGIGTIKLKMYDGTVQT 337
Query: 537 LKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVK-RNNLYVCVGKP 713
+++VRHV L NL+S L++ + GVMKI +G+LV+ K K NLY+ G+
Sbjct: 338 VQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKGEKIAANLYMLKGET 397
Query: 714 VSFAQNSVNVVQEDKTDLWHKRLGHMSSKGLEIL 815
+ A+ SV D T LWH++LGHMS +G++IL
Sbjct: 398 LQEAEASVAACSPDSTLLWHQKLGHMSDQGMKIL 431
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 134 bits (337), Expect = 4e-29
Identities = 78/219 (35%), Positives = 120/219 (54%), Gaps = 6/219 (2%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPN--KKGNQNQ--SNDQANLASTSENAGDIFMVTGICDVPIVNSVH 344
CY CG GH +EC N K G +N S Q +ASTS++ ++ S
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAA-------TSSK 282
Query: 345 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 524
+ W++DS T+HM+P ++ F +Y+ + V M N+ + G+G I LK G
Sbjct: 283 GERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDG 342
Query: 525 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVK-RNNLYVC 701
++ VRHV L NL+S L+D G + +G++K++KG+LV+ KA K +NLY+
Sbjct: 343 TVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYML 402
Query: 702 VGKPVSFAQNSVNVV-QEDKTDLWHKRLGHMSSKGLEIL 815
+G + A SV QE+ T +WH+RLGHMS +GL++L
Sbjct: 403 LGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVL 441
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 134 bits (337), Expect = 4e-29
Identities = 78/219 (35%), Positives = 120/219 (54%), Gaps = 6/219 (2%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPN--KKGNQNQ--SNDQANLASTSENAGDIFMVTGICDVPIVNSVH 344
CY CG GH +EC N K G +N S Q +ASTS++ ++ S
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAA-------TSSK 282
Query: 345 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 524
+ W++DS T+HM+P ++ F +Y+ + V M N+ + G+G I LK G
Sbjct: 283 GERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDG 342
Query: 525 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVK-RNNLYVC 701
++ VRHV L NL+S L+D G + +G++K++KG+LV+ KA K +NLY+
Sbjct: 343 TVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYML 402
Query: 702 VGKPVSFAQNSVNVV-QEDKTDLWHKRLGHMSSKGLEIL 815
+G + A SV QE+ T +WH+RLGHMS +GL++L
Sbjct: 403 LGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVL 441
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 133 bits (335), Expect = 7e-29
Identities = 78/219 (35%), Positives = 120/219 (54%), Gaps = 6/219 (2%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPN--KKGNQNQ--SNDQANLASTSENAGDIFMVTGICDVPIVNSVH 344
CY CG GH +EC N K G +N S Q +ASTS++ ++ S
Sbjct: 230 CYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVASTSDDGEILYSEAA-------TSSK 282
Query: 345 SSTVCENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSG 524
+ W++DS T+HM+P ++ F +Y+ + V M N+ + G+G I LK G
Sbjct: 283 GERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHALEIAGVGTIRLKMHDG 342
Query: 525 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVK-RNNLYVC 701
++ VRHV L NL+S L+D G + +G++K++KG+LV+ KA K +NLY+
Sbjct: 343 TVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKAEKITSNLYML 402
Query: 702 VGKPVSFAQNSVNV-VQEDKTDLWHKRLGHMSSKGLEIL 815
+G + A SV QE+ T +WH+RLGHMS +GL++L
Sbjct: 403 LGDTLQEADASVAASSQEETTMMWHQRLGHMSERGLKVL 441
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 133 bits (334), Expect = 9e-29
Identities = 80/224 (35%), Positives = 113/224 (50%), Gaps = 4/224 (1%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 356
C+ C + GHYIR+C KK ++Q + A S++ D + + V S++
Sbjct: 236 CFYCRKEGHYIRDCFEKKKKESQEKS-GDAAVASDDGSDGYQSADLL-------VASNSN 287
Query: 357 CENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIG----DICLKFDSG 524
+ +W+IDS C+FH+ P K LF Y+ + V M N CN+ GI CL
Sbjct: 288 TKGQWVIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIWFCKRSRCLM---E 344
Query: 525 YAYTLKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVCV 704
+L VRH P L NLIS L+ G + G +++ KG+ ++ K V N LYV
Sbjct: 345 LLRSLHEVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQ 404
Query: 705 GKPVSFAQNSVNVVQEDKTDLWHKRLGHMSSKGLEILHKAGCFG 836
G V + V +ED+T LWH RLGHMS KGL+ L K G G
Sbjct: 405 GSSVPVQEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLG 448
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 132 bits (333), Expect = 1e-28
Identities = 75/217 (34%), Positives = 113/217 (52%), Gaps = 2/217 (0%)
Frame = +3
Query: 177 CYNCGEVGHYIRECPNKKGNQNQSNDQANLASTSENAGDIFMVTGICDVPIVNSVHSSTV 356
C C E GH+ +CP KK + + A +A N+ + D+ +V H T
Sbjct: 225 CNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEE--------DIALVADEH--TH 274
Query: 357 CENEWLIDSACTFHMSPFKNLFSNYKEMKNSFVSMANEKKCNVFGIGDICLKFDSGYAYT 536
+ W++DS ++H+ P + F+ Y+++ +SMAN C V G G I ++ G T
Sbjct: 275 HSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCT 334
Query: 537 LKNVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLVIFKAVKRNNLYVCVGKPV 716
L VRHVP + NLIS + L+ G +GV+++ KGS +I K V R LY G V
Sbjct: 335 LNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTV 394
Query: 717 SFAQN--SVNVVQEDKTDLWHKRLGHMSSKGLEILHK 821
+ + + S Q+D T LWH RLGHM +G++IL K
Sbjct: 395 TGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSK 431
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 132 bits (332), Expect = 2e-28
Identities = 87/276 (31%), Positives = 142/276 (51%), Gaps = 5/276 (1%)
Frame = +3
Query: 9 VNKGGRQNSGEVMHVRGRSQYRFDNQQKLDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNC 188
V + GE + VRGRS+ R N D ++Q+ C C
Sbjct: 190 VQSDASSSKGEALQVRGRSEQRTYNDSS-DRDKSQS---------RGRSKSRGKKFCKYC 239
Query: 189 GEVGHYIRECPNKKGNQNQSND-QANLASTSENAGDIFMVTGICDVPIVNSVHSSTVCEN 365
+ H+I EC + + + +D +A++ +++EN+ +G C V V S +
Sbjct: 240 KKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSD-----SGDCLVVFAGCVAS----HD 290
Query: 366 EWLIDSACTFHMSPFKNLFSNYKEMKNS-FVSMANEKKCNVFGIGDICLKFDSGYAYTLK 542
EW++D+AC+FH+ ++ FS+YK ++N V M ++ + GIG + +K G TLK
Sbjct: 291 EWILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLK 350
Query: 543 NVRHVPDLCNNLISCAALEDDGLEGRFGNGVMKILKGSLV-IFKAVKRNNLYVCVGKPVS 719
+VRH+P + NLIS + L+ +G + GV+K+ KGSLV + + NLYV G +
Sbjct: 351 DVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLH 410
Query: 720 FAQNSVNVVQED--KTDLWHKRLGHMSSKGLEILHK 821
+ + V +++ KT+LWH RLGHMS G+ L K
Sbjct: 411 GSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMK 446
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 132 bits (331), Expect = 2e-28
Identities = 86/269 (31%), Positives = 142/269 (52%), Gaps = 5/269 (1%)
Frame = +3
Query: 30 NSGEVMHVRGRSQYRFDNQQKLDNHQNQNFIXXXXXXXXXXXXXXXXXXCYNCGEVGHYI 209
+ GE + VRGRS+ R N D+ ++Q+ C C + H+I
Sbjct: 197 SKGEALQVRGRSEQRTYNDSN-DHDKSQS---------RGRSKSRGKKFCKYCKKKNHFI 246
Query: 210 RECPNKKGNQNQSND-QANLASTSENAGDIFMVTGICDVPIVNSVHSSTVCENEWLIDSA 386
EC + + + +D +A++ +++EN+ +G C V V S +EW++D+A
Sbjct: 247 EECWKLQNKEKRKSDGKASVVTSAENSD-----SGDCLVVFAGYVAS----HDEWILDTA 297
Query: 387 CTFHMSPFKNLFSNYKEMKNS-FVSMANEKKCNVFGIGDICLKFDSGYAYTLKNVRHVPD 563
C+FH+ ++ FS+YK ++N V M ++ + GIG + +K G TLK+VRH+P
Sbjct: 298 CSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPG 357
Query: 564 LCNNLISCAALEDDGLEGRFGNGVMKILKGSLV-IFKAVKRNNLYVCVGKPVSFAQNSVN 740
+ NLIS + L+ +G + GV+K+ KGSLV + + NLYV G + + +
Sbjct: 358 MARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAA 417
Query: 741 VVQED--KTDLWHKRLGHMSSKGLEILHK 821
V +++ KT+LWH RLGHMS G+ L K
Sbjct: 418 VTKDEPSKTNLWHMRLGHMSELGMAELMK 446