BLASTX nr result
ID: Rehmannia26_contig00001263
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00001263
(1825 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera] 189 5e-50
emb|CAN60263.1| hypothetical protein VITISV_026496 [Vitis vinifera] 193 1e-49
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 169 6e-44
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 170 7e-43
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 165 2e-42
emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera] 162 2e-42
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 165 3e-42
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 164 3e-42
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 160 8e-42
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 163 8e-42
gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsi... 162 1e-41
emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group] 162 2e-41
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 164 2e-41
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 162 3e-41
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 163 3e-41
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 161 8e-41
ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group] g... 160 1e-40
emb|CAN65981.1| hypothetical protein VITISV_017970 [Vitis vinifera] 162 1e-40
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo... 162 2e-40
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 161 2e-40
>emb|CAN80490.1| hypothetical protein VITISV_004703 [Vitis vinifera]
Length = 777
Score = 189 bits (480), Expect(2) = 5e-50
Identities = 88/144 (61%), Positives = 109/144 (75%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G HW+ V WLLRY++ S+ GLKF S EG + GYVDS+Y D D R STT Y+FTL
Sbjct: 586 GREHWNGVTWLLRYVRGSLGVGLKFGSSKEGDGITGYVDSDYVGDLDKRXSTTGYIFTLF 645
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
G +SWKSQLQ IVALSTT++EY+A TEA+KEA+WL+GL+ E+ L+ V +F DSQS I
Sbjct: 646 GGPVSWKSQLQSIVALSTTKAEYIAATEAMKEALWLQGLVKELXVLNSVVEIFLDSQSAI 705
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRD 1393
QLC NP FH RTKHIDVR+H+IR+
Sbjct: 706 QLCNNPXFHXRTKHIDVRYHFIRE 729
Score = 37.7 bits (86), Expect(2) = 5e-50
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = -1
Query: 1378 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
++ G + LEKI NPADM TK LPV+KF L ++
Sbjct: 731 ISSGAMKLEKISXVDNPADMATKVLPVTKFKYSLDLV 767
>emb|CAN60263.1| hypothetical protein VITISV_026496 [Vitis vinifera]
Length = 1842
Score = 193 bits (491), Expect(2) = 1e-49
Identities = 88/145 (60%), Positives = 114/145 (78%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G HW+ VKWLLRY++ S+ GLKF S EG ++GYVD +YA D D R+STTSY+FTL
Sbjct: 1661 GREHWNGVKWLLRYVRGSLGVGLKFGVSKEGASIIGYVDLDYAGDLDKRRSTTSYIFTLF 1720
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
G ++WKSQLQ IVALST E EY+ T+A+KE +WL+GL+ E+G L+ V +FSDSQS I
Sbjct: 1721 GGPVNWKSQLQSIVALSTXEVEYITTTKAMKETLWLQGLVKELGVLNSVVEIFSDSQSTI 1780
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRDI 1390
QLCKN VFH+RTKH++VR+H+IR+I
Sbjct: 1781 QLCKNXVFHERTKHVNVRYHFIREI 1805
Score = 32.0 bits (71), Expect(2) = 1e-49
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = -1
Query: 1378 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
V+ + LEKI NP DM TK LPV KF L ++
Sbjct: 1806 VSSRKMKLEKISLADNPIDMATKVLPVRKFXYYLDLV 1842
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 169 bits (428), Expect(2) = 6e-44
Identities = 78/145 (53%), Positives = 107/145 (73%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G +HW AVKW++RYLK + + L F K + + GY DSNYA D D R+S + YVFT+
Sbjct: 1170 GSMHWEAVKWVMRYLKGAQDLNLVFTKEKD-FTVTGYCDSNYAADLDRRRSISGYVFTIG 1228
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
G+ +SWK+ LQ +VA+STTE+EY+A+ EA KEA+W+KGL+ ++G V ++ DSQS I
Sbjct: 1229 GNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAMWIKGLLQDMGMQQDKVKIWCDSQSAI 1288
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRDI 1390
L KN V+H+RTKHIDVRF+YIRD+
Sbjct: 1289 CLSKNSVYHERTKHIDVRFNYIRDV 1313
Score = 37.4 bits (85), Expect(2) = 6e-44
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = -1
Query: 1393 YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
Y V G V++ KI + NP D TKC+PV+KF S L +L
Sbjct: 1309 YIRDVVESGDVDVLKIHTSRNPVDALTKCIPVNKFKSALGVL 1350
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 170 bits (430), Expect(2) = 7e-43
Identities = 80/145 (55%), Positives = 108/145 (74%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G W AVKW+LRYL +V+ GL F K+ G + VGY DS++A D D ++ST+ YVFTL
Sbjct: 111 GKSQWLAVKWILRYLYGTVDVGLLFKKNC-GQQCVGYCDSDFAGDLDKQRSTSGYVFTLG 169
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
G +SW+S LQ +ALSTTE+EY+A TEA+KEA+WLKGL+ ++G + N+ VF D+QS I
Sbjct: 170 GGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAI 229
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRDI 1390
L KN +H RTKHIDV++HY+R+I
Sbjct: 230 FLAKNQTYHARTKHIDVKYHYVREI 254
Score = 33.1 bits (74), Expect(2) = 7e-43
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 1393 YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
Y + G V L+KI ++ NP+DM TK + KF CLK++
Sbjct: 250 YVREIIEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHCLKLI 291
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 165 bits (417), Expect(2) = 2e-42
Identities = 78/146 (53%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPE-GVKLVGYVDSNYANDRDNRKSTTSYVFTL 1648
G HW AVKWL +YL + + GL + + + +L G+VD++YA + D RKS T YVFT
Sbjct: 1021 GKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTX 1080
Query: 1647 CGSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSG 1468
G +SWK+ LQ +VALSTTE+EY+A+TEA+KEA+WLKG+ E+ G VVV+ D+QS
Sbjct: 1081 FGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSA 1140
Query: 1467 IQLCKNPVFHDRTKHIDVRFHYIRDI 1390
I L KN FH+R+KHIDVR H++RDI
Sbjct: 1141 IHLAKNQSFHERSKHIDVRLHFVRDI 1166
Score = 37.0 bits (84), Expect(2) = 2e-42
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = -1
Query: 1378 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKILN 1265
+A G + + K+ ++ NP+DM TK L V+KF CL ++N
Sbjct: 1167 IAAGEIGVGKVHTKDNPSDMLTKSLNVTKFKHCLNLIN 1204
>emb|CAN67902.1| hypothetical protein VITISV_037907 [Vitis vinifera]
Length = 735
Score = 162 bits (409), Expect(2) = 2e-42
Identities = 75/146 (51%), Positives = 103/146 (70%), Gaps = 1/146 (0%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPE-GVKLVGYVDSNYANDRDNRKSTTSYVFTL 1648
G HW AVKWL +YL + + GL + + + G +L G+VD++Y + D RKS YVFT+
Sbjct: 548 GKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLGTQLQGFVDADYPGNIDTRKSLIGYVFTV 607
Query: 1647 CGSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSG 1468
G +SWK+ LQ +VALS TE+EY+A+TE +KE +WLKG+I E+ G VVV+ D+QS
Sbjct: 608 FGGAVSWKANLQSVVALSATEAEYMAMTEVVKEVIWLKGIIEELAMYKGKVVVYCDNQSA 667
Query: 1467 IQLCKNPVFHDRTKHIDVRFHYIRDI 1390
I L KN FH+R+KHIDVR H++RDI
Sbjct: 668 IHLAKNQSFHERSKHIDVRLHFVRDI 693
Score = 40.0 bits (92), Expect(2) = 2e-42
Identities = 17/38 (44%), Positives = 27/38 (71%)
Frame = -1
Query: 1378 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKILN 1265
+A G + + K+P++ NP+DM TK L V+KF CL ++N
Sbjct: 694 IAVGEIGVGKVPTKDNPSDMLTKSLNVTKFKHCLNLIN 731
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 165 bits (417), Expect(2) = 3e-42
Identities = 81/142 (57%), Positives = 107/142 (75%)
Frame = -2
Query: 1815 HWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLCGSC 1636
HW VKW+LRY+K S+ L++ +S + K+VGY D+++A +D R+S T VFTL GS
Sbjct: 1151 HWLGVKWVLRYIKGSLGTKLQYKRSSD-FKVVGYCDADHAACKDRRRSITGLVFTLGGST 1209
Query: 1635 ISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGIQLC 1456
ISWKS Q +VALSTTE+EY+++TEA+KEAVW+KGL+ E G+ +V +F DSQS I L
Sbjct: 1210 ISWKSGQQRVVALSTTEAEYMSLTEAVKEAVWMKGLLKEFGYEQKSVEIFCDSQSAIALS 1269
Query: 1455 KNPVFHDRTKHIDVRFHYIRDI 1390
KN V H+RTKHIDVR+ YIRDI
Sbjct: 1270 KNNVHHERTKHIDVRYQYIRDI 1291
Score = 36.2 bits (82), Expect(2) = 3e-42
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = -1
Query: 1393 YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
Y +A G ++ KI +E NPAD+ TK +PV+KF + L +L
Sbjct: 1287 YIRDIIANGDGDVVKIDTEKNPADIFTKIVPVNKFQAALTLL 1328
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 164 bits (414), Expect(2) = 3e-42
Identities = 79/141 (56%), Positives = 105/141 (74%)
Frame = -2
Query: 1815 HWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLCGSC 1636
HW AVKW++RY+K + + L+F K + ++ GY DS+YA D D R+S T +VFT G+
Sbjct: 1160 HWQAVKWVMRYMKGTQDTCLRF-KKDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNT 1218
Query: 1635 ISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGIQLC 1456
ISWKS LQ +VALSTTE+EY+A+ EA+KEA+WL+GL +E+GF V V DSQS I L
Sbjct: 1219 ISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQSAIALS 1278
Query: 1455 KNPVFHDRTKHIDVRFHYIRD 1393
KN V H+RTKHIDVR+H+IR+
Sbjct: 1279 KNSVHHERTKHIDVRYHFIRE 1299
Score = 37.0 bits (84), Expect(2) = 3e-42
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -1
Query: 1378 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
+A G + + KI + +NPAD+ TK +PVSK LK+L
Sbjct: 1301 IADGEIQVVKISTTWNPADIFTKTVPVSKLQEALKLL 1337
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 160 bits (406), Expect(2) = 8e-42
Identities = 77/142 (54%), Positives = 105/142 (73%)
Frame = -2
Query: 1815 HWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLCGSC 1636
HW VKW+LRY+K +V+ L + ++ + + GY D++YA D D R+S T VFTL G+
Sbjct: 1181 HWLGVKWVLRYIKGTVDTRLCYKRNSD-FSICGYCDADYAADLDKRRSITGLVFTLGGNT 1239
Query: 1635 ISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGIQLC 1456
ISWKS LQ +VA S+TE EY+++TEA+KEA+WLKGL+ + G+ NV +F DSQS I L
Sbjct: 1240 ISWKSGLQRVVAQSSTECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIFCDSQSAIALS 1299
Query: 1455 KNPVFHDRTKHIDVRFHYIRDI 1390
KN V H+RTKHIDV+FH+IR+I
Sbjct: 1300 KNNVHHERTKHIDVKFHFIREI 1321
Score = 38.9 bits (89), Expect(2) = 8e-42
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -1
Query: 1378 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
+A G V + KI +E NPAD+ TK LPV+KF + L L
Sbjct: 1322 IADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFL 1358
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 163 bits (413), Expect(2) = 8e-42
Identities = 79/142 (55%), Positives = 105/142 (73%)
Frame = -2
Query: 1815 HWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLCGSC 1636
HW VKW+LRY+K ++ L + KS +VGY D++YA D D R+S T VFTL G+
Sbjct: 1174 HWLGVKWVLRYIKGTLKTRLCYKKS-SSFSIVGYCDADYAADLDKRRSITGLVFTLGGNT 1232
Query: 1635 ISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGIQLC 1456
ISWKS LQ +VA STTESEY+++TEA+KEA+WLKGL+ + G+ +V +F DSQS I L
Sbjct: 1233 ISWKSGLQRVVAQSTTESEYMSLTEAVKEAIWLKGLLKDFGYEQKSVEIFCDSQSAIALS 1292
Query: 1455 KNPVFHDRTKHIDVRFHYIRDI 1390
KN V H+RTKHIDV++H+IR+I
Sbjct: 1293 KNNVHHERTKHIDVKYHFIREI 1314
Score = 36.2 bits (82), Expect(2) = 8e-42
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -1
Query: 1378 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
++ G V + KI +E NPAD+ TK L VSKF + L +L
Sbjct: 1315 ISDGTVEVLKISTEKNPADIFTKVLAVSKFQAALNLL 1351
>gb|AAD23679.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 838
Score = 162 bits (409), Expect(2) = 1e-41
Identities = 78/143 (54%), Positives = 105/143 (73%)
Frame = -2
Query: 1821 MVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLCG 1642
M HW VKW+LRY+K S++ L++ + + V + GY DS+++ DRD +STT Y FT+ G
Sbjct: 654 MNHWLGVKWVLRYIKGSIDSRLQYKREGDFV-VTGYCDSDHSGDRDRSRSTTGYTFTVGG 712
Query: 1641 SCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGIQ 1462
+ +SW+S LQ +VALS+TE+EY+A+TEA KEA WLK L++E+GF G V + DSQS I
Sbjct: 713 NIVSWRSCLQPVVALSSTEAEYIALTEAAKEAYWLKDLMNELGFKQGAVDIHCDSQSAIA 772
Query: 1461 LCKNPVFHDRTKHIDVRFHYIRD 1393
L KN V H+RTKHI RFHYIRD
Sbjct: 773 LAKNAVHHERTKHIQRRFHYIRD 795
Score = 37.4 bits (85), Expect(2) = 1e-41
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = -1
Query: 1393 YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
Y + G V + KI + NP+D+ TK +PV+KFLS LK L
Sbjct: 792 YIRDAITDGEVKVLKISTVHNPSDIFTKVVPVNKFLSALKKL 833
>emb|CAH66031.1| H0515C11.7 [Oryza sativa Indica Group]
Length = 293
Score = 162 bits (411), Expect(2) = 2e-41
Identities = 76/145 (52%), Positives = 107/145 (73%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G HW A+ W+ RYL+ + + LKF ++ +G LVGYVDS++A D D R+S T YVFT+
Sbjct: 110 GKEHWKAIHWIFRYLRGTTDACLKFGRTDKG--LVGYVDSDFAADLDKRRSLTGYVFTIG 167
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
+SWK+ LQ IVA STTE+EY+A+ EA KE+VWLKGL +E+ +D + +F DSQS I
Sbjct: 168 SCAVSWKATLQPIVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAI 227
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRDI 1390
L K+ +FH+RTKHID+++HY+RD+
Sbjct: 228 CLTKDQMFHERTKHIDIKYHYVRDV 252
Score = 35.8 bits (81), Expect(2) = 2e-41
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -1
Query: 1393 YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
Y VA+G + + KI + NPADM TK +PV+KF C ++
Sbjct: 248 YVRDVVAQGKLKVCKISTHDNPADMMTKPVPVAKFELCSSLV 289
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
reverse transcriptase [Arabidopsis thaliana]
Length = 587
Score = 164 bits (414), Expect(2) = 2e-41
Identities = 75/145 (51%), Positives = 106/145 (73%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G +HW AVKW+LRY++ S + L F K E ++ GY DS+YA D D R+S + YVFT+
Sbjct: 401 GSIHWEAVKWILRYMRGSQDLNLVFTKEKE-FRVTGYCDSDYAADLDRRRSVSGYVFTVG 459
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
G+ +SWK+ LQ + ALSTTE+E++A+TEA KEA+W+KGL+ ++G V ++ DSQS I
Sbjct: 460 GNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQSAI 519
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRDI 1390
L KN H+RTKHIDVR+++IRD+
Sbjct: 520 CLSKNSTHHERTKHIDVRYNFIRDV 544
Score = 34.3 bits (77), Expect(2) = 2e-41
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -1
Query: 1378 VAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
V G V++ KI + NPAD TK +PV+KF S L++L
Sbjct: 545 VEAGDVDVLKIHTSRNPADALTKSIPVNKFQSALELL 581
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 162 bits (411), Expect(2) = 3e-41
Identities = 77/145 (53%), Positives = 107/145 (73%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G HW AV+W+ RYL+ + + LKF + +G LVGYVDS++A D D R+S T YVFT+
Sbjct: 1139 GKEHWKAVQWIFRYLRGTADACLKFGRIDKG--LVGYVDSDFAADLDKRRSLTGYVFTIG 1196
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
+SWK+ LQ +VA STTE+EY+A+ EA KE+VWLKGL +E+ +D + +F DSQS I
Sbjct: 1197 SCAVSWKATLQPVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAI 1256
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRDI 1390
L K+ +FH+RTKHID+++HY+RDI
Sbjct: 1257 CLTKDQMFHERTKHIDIKYHYVRDI 1281
Score = 35.0 bits (79), Expect(2) = 3e-41
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = -1
Query: 1393 YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
Y VA+G + + KI NPADM TK +PV+KF C ++
Sbjct: 1277 YVRDIVAQGKLKVCKISIHDNPADMMTKPIPVAKFELCSSLV 1318
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 163 bits (413), Expect(2) = 3e-41
Identities = 74/145 (51%), Positives = 108/145 (74%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G HW A++W+ RYL+ + N LKF ++ +G L+GYVDS++A D D R+S T YVFT+
Sbjct: 992 GKEHWKAIQWIFRYLRDTANACLKFGRTNKG--LIGYVDSDFAADLDKRRSLTGYVFTIG 1049
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
+SWK+ L+H+VA STTE+EY+A+ EA KE+VWLKGL +E+ + + +F DSQS I
Sbjct: 1050 SCAVSWKATLRHVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVYSCINLFCDSQSAI 1109
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRDI 1390
L K+ +FH+RTKHID+++HY+RD+
Sbjct: 1110 CLTKDQMFHERTKHIDIKYHYVRDV 1134
Score = 34.3 bits (77), Expect(2) = 3e-41
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -1
Query: 1393 YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
Y VA+G + + KI + NP DM TK +PV+KF C ++
Sbjct: 1130 YVRDVVAQGKLKVCKISTHDNPVDMMTKHVPVAKFELCSSLV 1171
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 161 bits (407), Expect(2) = 8e-41
Identities = 80/142 (56%), Positives = 104/142 (73%)
Frame = -2
Query: 1815 HWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLCGSC 1636
HW AVKW+LRY++ + L F K E L GY DS+Y ++ D R+S T YVFT+ G+
Sbjct: 1153 HWQAVKWVLRYMRGTEKKKLCFRKQ-EDFLLRGYCDSDYGSNFDTRRSITGYVFTVGGNT 1211
Query: 1635 ISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGIQLC 1456
ISWKS+LQ +VA+S+TE+EY+A+TEA+KEA+WLKG +E+G V V SDSQS I L
Sbjct: 1212 ISWKSKLQKVVAISSTEAEYMALTEAVKEALWLKGFAAELGHSQDYVEVHSDSQSAITLA 1271
Query: 1455 KNPVFHDRTKHIDVRFHYIRDI 1390
KN V H+RTKHID+R H+IRDI
Sbjct: 1272 KNSVHHERTKHIDIRLHFIRDI 1293
Score = 35.0 bits (79), Expect(2) = 8e-41
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = -1
Query: 1411 ISLHS*YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
I LH + + GL+ + KI +E NPA++ TK +P++KF L +L
Sbjct: 1285 IRLH--FIRDIICAGLIKVVKIATECNPANIFTKTVPLAKFEGALNML 1330
>ref|NP_001174752.1| Os06g0316600 [Oryza sativa Japonica Group]
gi|255676990|dbj|BAH93480.1| Os06g0316600 [Oryza sativa
Japonica Group]
Length = 759
Score = 160 bits (404), Expect(2) = 1e-40
Identities = 75/145 (51%), Positives = 108/145 (74%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G HW AV+W+ RYL+ + + LKF ++ +G LVGYVDS++A D D R+S T YVFT+
Sbjct: 576 GKEHWKAVQWIFRYLRGTADACLKFGRTDKG--LVGYVDSDFAADLDKRRSLTGYVFTIG 633
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
+SWK+ LQ IVA STTE+EY+A+ EA KE+VWLKGL +++ +D + +F DSQS I
Sbjct: 634 SCAVSWKATLQPIVAQSTTEAEYMAIAEACKESVWLKGLFAKLCGVDSCINLFCDSQSAI 693
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRDI 1390
L K+ +FH+RTK+ID+++HY+RD+
Sbjct: 694 CLTKDQMFHERTKYIDIKYHYVRDV 718
Score = 35.8 bits (81), Expect(2) = 1e-40
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -1
Query: 1393 YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
Y VA+G + + KI + NPADM TK +PV+KF C ++
Sbjct: 714 YVRDVVAQGKLKVCKISTHDNPADMMTKPVPVAKFELCSSLV 755
>emb|CAN65981.1| hypothetical protein VITISV_017970 [Vitis vinifera]
Length = 421
Score = 162 bits (409), Expect(2) = 1e-40
Identities = 81/134 (60%), Positives = 103/134 (76%), Gaps = 8/134 (5%)
Frame = -2
Query: 1767 NFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLCGSCISWKSQLQHIVALSTT 1588
N GLKF S EGV ++GYVDS+YA D D R+ST Y+FTL G +SWKSQLQ IVALSTT
Sbjct: 256 NPGLKFRYSKEGVGIIGYVDSDYARDLDKRRSTIGYIFTLFGGPVSWKSQLQLIVALSTT 315
Query: 1587 ESEYVAV--------TEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGIQLCKNPVFHDR 1432
E++Y+AV TEA+KEA+ L+GL+ E+G L+ V +F +SQS IQLCKN VFH+R
Sbjct: 316 EAKYIAVTEAKYIIATEAMKEAILLQGLVKELGVLNSVVEIFLNSQSAIQLCKNLVFHER 375
Query: 1431 TKHIDVRFHYIRDI 1390
TKH+DVR+H+IR+I
Sbjct: 376 TKHVDVRYHFIREI 389
Score = 33.5 bits (75), Expect(2) = 1e-40
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = -1
Query: 1378 VAKGLVNLEKIPSEFNPADMGTKCLPVSKF 1289
V+ G V LEKI + N ADM TK L VSKF
Sbjct: 390 VSLGAVKLEKISTTDNSADMATKVLLVSKF 419
>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 1822
Score = 162 bits (409), Expect(2) = 2e-40
Identities = 79/146 (54%), Positives = 106/146 (72%), Gaps = 1/146 (0%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSP-EGVKLVGYVDSNYANDRDNRKSTTSYVFTL 1648
G HW AVKW+ + + N GL + + +G KL GYVD+++A D D R+S + Y+FTL
Sbjct: 497 GKEHWEAVKWV----QGASNVGLLYKRMRNDGEKLRGYVDADFAGDLDKRRSLSGYIFTL 552
Query: 1647 CGSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSG 1468
G +SWK+QLQ +VALSTTE+EY+A TE +KEA+WLKGLI E+G + V VF D+QS
Sbjct: 553 FGCTVSWKAQLQLVVALSTTEAEYIAATEGVKEAMWLKGLIGELGIVQDEVEVFCDNQSS 612
Query: 1467 IQLCKNPVFHDRTKHIDVRFHYIRDI 1390
I L KN +F+DRTKHID++ H+IRDI
Sbjct: 613 ILLTKNQMFYDRTKHIDIKLHFIRDI 638
Score = 33.1 bits (74), Expect(2) = 2e-40
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -1
Query: 1411 ISLHS*YXXXXVAKGLVNLEKIPSEFNPADMGTK 1310
I LH + +++G V LEKI ++ NPADMGT+
Sbjct: 630 IKLH--FIRDIISRGTVTLEKIHTDDNPADMGTR 661
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 161 bits (407), Expect(2) = 2e-40
Identities = 74/145 (51%), Positives = 107/145 (73%)
Frame = -2
Query: 1824 GMVHWSAVKWLLRYLKHSVNFGLKFCKSPEGVKLVGYVDSNYANDRDNRKSTTSYVFTLC 1645
G HW A++W+ RYL+ + + LKF ++ +G LVGYVDS++A D D R+S YVFT+
Sbjct: 948 GKEHWKAIQWIFRYLRGTADACLKFGRTDKG--LVGYVDSDFAADLDKRRSLIGYVFTIG 1005
Query: 1644 GSCISWKSQLQHIVALSTTESEYVAVTEALKEAVWLKGLISEIGFLDGNVVVFSDSQSGI 1465
+SWK+ LQ +VA STTE+EY+A+ EA KE+VWLKGL +E+ +D + +F DSQS I
Sbjct: 1006 SCAVSWKATLQSVVAQSTTEAEYMAIAEACKESVWLKGLFAELCGVDSCINLFCDSQSAI 1065
Query: 1464 QLCKNPVFHDRTKHIDVRFHYIRDI 1390
L K+ +FH+RTKHID+++HY+RD+
Sbjct: 1066 CLTKDKMFHERTKHIDIKYHYVRDV 1090
Score = 33.9 bits (76), Expect(2) = 2e-40
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -1
Query: 1393 YXXXXVAKGLVNLEKIPSEFNPADMGTKCLPVSKFLSCLKIL 1268
Y VA+G + + KI + NPA+M TK +PV+KF C ++
Sbjct: 1086 YVRDVVAQGKLKVCKISTHDNPANMMTKHVPVAKFELCSSLV 1127