BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00001146
         (394 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...    75   5e-23
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    65   2e-21
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...    64   8e-21
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...    72   2e-20
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...    71   3e-20
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]    66   3e-20
emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]         72   5e-20
emb|CAN74382.1| hypothetical protein VITISV_007945 [Vitis vinifera]    68   2e-19
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t...    72   4e-19
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    70   9e-19
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...    66   9e-19
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                     67   9e-19
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...    61   1e-18
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         65   9e-18
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    67   6e-17
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...    67   8e-17
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...    62   8e-17
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]          61   1e-15
emb|CAA20201.1| putative transposable element [Arabidopsis thali...    67   1e-15
emb|CAN71038.1| hypothetical protein VITISV_011062 [Vitis vinifera]    71   2e-15

>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score = 75.5 bits (184), Expect(2) = 5e-23
 Identities = 35/56 (62%), Positives = 45/56 (80%), Gaps = 3/56 (5%)
 Frame = -3

Query: 161 NCSVVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           N  ++ C+WLFK+K+     E VRFKARLVAKG+TQ+EG+DY EIFAPVVK T++R
Sbjct: 557 NRKIIGCRWLFKLKSGIPGVEPVRFKARLVAKGYTQREGVDYQEIFAPVVKHTSIR 612



 Score = 57.8 bits (138), Expect(2) = 5e-23
 Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
 Frame = -2

Query: 375 DENEPENEN-----------LHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNS 229
           DE EPE  N           L +YQL +DR RR I  PARF +    +F   V +S+   
Sbjct: 456 DEQEPETVNETDPTVESEGSLANYQLAKDRVRRQINPPARFTEESGVAFALVVVESLSLE 515

Query: 228 EPKSYEEALKSKNSADWLNA 169
           EP+SY+EA + K    W NA
Sbjct: 516 EPESYQEATQDKEWLKWKNA 535


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 65.1 bits (157), Expect(2) = 2e-21
 Identities = 32/53 (60%), Positives = 41/53 (77%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152 VVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           VV  KW+FK K      E+ R+KARLVAKGF+QKEG+DY EIF+PVVK +++R
Sbjct: 814 VVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIR 866



 Score = 62.8 bits (151), Expect(2) = 2e-21
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
 Frame = -2

Query: 387 DEILDENEPE-NENLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYE 211
           +EI+ E + E  + L  Y LVRDR +R ++ P R+    MT+F  SV + I + EPK+Y+
Sbjct: 716 EEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQ 775

Query: 210 EALKSKNSADWLNAM 166
           EA+ S  +  W+ A+
Sbjct: 776 EAINSNEADQWVKAI 790


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score = 63.5 bits (153), Expect(2) = 8e-21
 Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
 Frame = -2

Query: 393 VHDEIL-DENEPENENLHDYQLVRDRARR-NIRQPARFDDFHMTSFVFSVFDSIDNSEPK 220
           +++E++  ENE   ++L DY L RD  RR NIR P+RF+D    ++  +  + ++  EPK
Sbjct: 678 MNEEVVGSENE---QSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEPK 734

Query: 219 SYEEALKSKNSADWLNAM 166
           SYEEALKS     W NAM
Sbjct: 735 SYEEALKSSKRKQWENAM 752



 Score = 62.4 bits (150), Expect(2) = 8e-21
 Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152 VVDCKWLFKVKNECESV---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           ++ CKW+FK+K     V   R+KARLVAKGF+Q+EGIDY E+F+ VVK  ++R
Sbjct: 776 LIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEGIDYNEVFSLVVKHVSIR 828


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
           (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
           unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score = 71.6 bits (174), Expect(2) = 2e-20
 Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152 VVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           ++ C+WLFK+K+     E VR+KARLVAKG+TQ+EG+DY EIFAPV K T++R
Sbjct: 789 IIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVAKHTSIR 841



 Score = 52.8 bits (125), Expect(2) = 2e-20
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
 Frame = -2

Query: 387 DEILDEN-EPENE----------NLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDS 241
           DE +DE  EPE +          +L +YQLVRDR RR I  PARF +    +F     ++
Sbjct: 681 DESVDEEQEPEPQVELPETQTTSSLANYQLVRDRERRQIHPPARFTEESGVAFALVTVET 740

Query: 240 IDNSEPKSYEEALKSKNSADW 178
           +   EP+SY+EA   K    W
Sbjct: 741 LSMEEPQSYQEATSDKEWKKW 761


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 70.9 bits (172), Expect(2) = 3e-20
 Identities = 32/53 (60%), Positives = 42/53 (79%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152  VVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
            ++ C+WLFK+K+     E  RFKARLVAKG+TQ+EG+DY EIFAPVVK  ++R
Sbjct: 882  IIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAPVVKHVSIR 934



 Score = 53.1 bits (126), Expect(2) = 3e-20
 Identities = 24/65 (36%), Positives = 37/65 (56%)
 Frame = -2

Query: 372 ENEPENENLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSK 193
           +  P+   L  Y+L RDR RRNI  P RF +    +F   V ++    EP+SY+EA++S+
Sbjct: 790 QETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQEAMESQ 849

Query: 192 NSADW 178
           +   W
Sbjct: 850 DCEKW 854


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score = 65.9 bits (159), Expect(2) = 3e-20
 Identities = 31/55 (56%), Positives = 40/55 (72%), Gaps = 3/55 (5%)
 Frame = -3

Query: 158 CSVVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           C VV CKW+FK K      E  RFKA LVAK +TQ+EG+D+ EIF+P+VK T++R
Sbjct: 499 CKVVGCKWVFKKKLGIPHVEPERFKATLVAKAYTQREGMDFNEIFSPMVKHTSIR 553



 Score = 58.2 bits (139), Expect(2) = 3e-20
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
 Frame = -2

Query: 372 ENEPENEN--LHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALK 199
           E +P+  +  L +YQL RD ARR+IR P RF    M ++  S+ + +  +EPK+Y EA+ 
Sbjct: 407 ETKPQQYDIPLENYQLTRDGARRSIRPPQRFGYNDMVAYSLSIGEELSCAEPKNYLEAIS 466

Query: 198 SKNSADWLNAMXXLF 154
            K+S  W+ AM   F
Sbjct: 467 CKDSPKWMTAMQEEF 481


>emb|CAA37920.1| unnamed protein product [Arabidopsis thaliana]
          Length = 494

 Score = 71.6 bits (174), Expect(2) = 5e-20
 Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152 VVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           ++ C+WLFK+K+     E VR+KARLVAKG+TQ+EG+DY EIFAPV K T++R
Sbjct: 114 IIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVAKHTSIR 166



 Score = 51.6 bits (122), Expect(2) = 5e-20
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
 Frame = -2

Query: 387 DEILDEN-EPENE----------NLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDS 241
           DE +DE  EPE +          +L +YQL RDR RR I  PARF +    +F     ++
Sbjct: 6   DESVDEEQEPEPQVELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFALVTVET 65

Query: 240 IDNSEPKSYEEALKSKNSADW 178
           +   EP+SY+EA  +K    W
Sbjct: 66  LSMEEPQSYQEATSNKEWKKW 86


>emb|CAN74382.1| hypothetical protein VITISV_007945 [Vitis vinifera]
          Length = 444

 Score = 68.2 bits (165), Expect(2) = 2e-19
 Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 3/54 (5%)
 Frame = -3

Query: 158 CSVVDCKWLFKVKNECESV---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTV 6
           C VV CKW+FK K     V   RFKARLVAKG+TQ+EG+D+ EIF+P VK T++
Sbjct: 232 CKVVGCKWVFKKKLGIPGVEPERFKARLVAKGYTQREGVDFNEIFSPAVKHTSI 285



 Score = 52.8 bits (125), Expect(2) = 2e-19
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
 Frame = -2

Query: 372 ENEPENEN--LHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALK 199
           E EP+  +  L +YQL RDRAR++IR   RF    M +   S+   +  +EPK+Y E + 
Sbjct: 140 EIEPQQYDIPLENYQLTRDRARKSIRPLQRFGYNDMVACSLSIGKELRCAEPKNYLETVS 199

Query: 198 SKNSADWLNAMXXLF 154
            K+S  W+NAM   F
Sbjct: 200 CKDSPKWMNAMQEEF 214


>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
           retrotransposon Ta1 (fragment) gi|16356|emb|CAA37917.1|
           reverse transcriptase [Arabidopsis thaliana]
          Length = 587

 Score = 72.0 bits (175), Expect(2) = 4e-19
 Identities = 33/53 (62%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152 VVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           ++ C+WLFK+K+     E VR+KARLVAKG+TQ+EG+DY EIFAPVVK T +R
Sbjct: 113 IIGCRWLFKMKSGIPGVEPVRYKARLVAKGYTQREGVDYQEIFAPVVKHTFIR 165



 Score = 48.1 bits (113), Expect(2) = 4e-19
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
 Frame = -2

Query: 387 DEILDENEPENE----------NLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSI 238
           + + +E EPE +          +L  YQL +DR RR I  PARF +    +F     +++
Sbjct: 6   ETVEEEQEPEPQVELPKTQTTSSLAYYQLAKDRERREIHPPARFTEESGVAFALVTVETL 65

Query: 237 DNSEPKSYEEALKSKNSADW 178
              EP+SY+EA   K    W
Sbjct: 66  SMEEPQSYQEATSDKEWKKW 85


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 70.1 bits (170), Expect(2) = 9e-19
 Identities = 32/52 (61%), Positives = 42/52 (80%), Gaps = 3/52 (5%)
 Frame = -3

Query: 149  VDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
            VDCKWLFK+K+     E  ++K+RLVAKGF+QKEGIDY E+F+PVVK  ++R
Sbjct: 958  VDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIR 1009



 Score = 48.9 bits (115), Expect(2) = 9e-19
 Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
 Frame = -2

Query: 381  ILDENEPENENLHDYQLVRDRARRNIRQPARFDDF------HMTSFVFSVFDSIDNSEPK 220
            ++D+N+ ++   H       R RR IR+P R+ D       +  +F  +V + I   EP+
Sbjct: 863  VIDQNDSQSIAAH-------RPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPR 915

Query: 219  SYEEALKSKNSADWLNAM 166
            SY+EA++SK+S  WL++M
Sbjct: 916  SYKEAMESKDSKKWLSSM 933


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score = 66.2 bits (160), Expect(2) = 9e-19
 Identities = 32/53 (60%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152  VVDCKWLFKVKNECESV---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
            V+ CKW+FK K     V   R+KARLVAKGF+Q+EGIDY EIF+PVVK  ++R
Sbjct: 866  VIGCKWIFKRKAGIPGVEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIR 918



 Score = 52.8 bits (125), Expect(2) = 9e-19
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
 Frame = -2

Query: 387 DEILDENEPENENLHDYQLVRDRARRNIRQPARF--DDFHMTSFVFSVFDSIDNSEPKSY 214
           D+ ++E + +++ L +Y L RDR RR IR P RF  +D  +  F  ++ +  +  EP++Y
Sbjct: 767 DKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETY 826

Query: 213 EEALKSKNSADWLNA 169
           EEA++S     W  A
Sbjct: 827 EEAMRSPECEKWKQA 841


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score = 67.0 bits (162), Expect(2) = 9e-19
 Identities = 31/56 (55%), Positives = 43/56 (76%), Gaps = 3/56 (5%)
 Frame = -3

Query: 161  NCSVVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
            N  ++ C+WLFK+K+     E VR+KA+LVAKG+T +EG+DY EIFA VVK T++R
Sbjct: 886  NRKIIGCRWLFKLKSGSPGVEPVRYKAQLVAKGYTHREGVDYQEIFALVVKHTSIR 941



 Score = 52.0 bits (123), Expect(2) = 9e-19
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
 Frame = -2

Query: 387  DEILDENEPENE----------NLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSI 238
            + + +E EPE +          +L +YQL RDR RR I  PARF +    +F     +++
Sbjct: 782  ESVEEEQEPETQVELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFALVTVETL 841

Query: 237  DNSEPKSYEEALKSKNSADW 178
               EP+SY+EA   K    W
Sbjct: 842  SMEEPQSYQEATSDKEWKKW 861


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score = 60.8 bits (146), Expect(2) = 1e-18
 Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152 VVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           ++ CKW+FK+K      E  R+K RLVAKGF+Q+EGIDY E+F+ VVK  ++R
Sbjct: 248 LIGCKWIFKLKPGIPGLEKQRYKVRLVAKGFSQQEGIDYNEVFSLVVKHVSIR 300



 Score = 57.8 bits (138), Expect(2) = 1e-18
 Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
 Frame = -2

Query: 387 DEILDENEPENENLHDYQLVRDRARR-NIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYE 211
           +E +D +E E ++L DY L R+R RR NIR P+RF D    ++  +  + ++  EPKSYE
Sbjct: 151 NEEVDGSENE-QSLDDYLLARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIEEPKSYE 209

Query: 210 EALKSKNSADWLNAM 166
           EA+K      W +AM
Sbjct: 210 EAMKRSKRKQWESAM 224


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 65.1 bits (157), Expect(2) = 9e-18
 Identities = 30/57 (52%), Positives = 45/57 (78%), Gaps = 4/57 (7%)
 Frame = -3

Query: 161  NCSVVDCKWLFKVKNE----CESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
            N  +++CKW+FK +NE     E  ++KARLVA+GFTQ+EG+D+ EIF+PVVK +++R
Sbjct: 854  NKRLINCKWIFK-RNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIR 909



 Score = 50.4 bits (119), Expect(2) = 9e-18
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = -2

Query: 369 NEPENENLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKN 190
           +E    +L +YQL RDR RR +R P R+    + ++     D +   EP ++ EA++S +
Sbjct: 766 SELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESVH 825

Query: 189 SADWLNAM 166
              WL AM
Sbjct: 826 CDKWLEAM 833


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
           copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 67.0 bits (162), Expect(2) = 6e-17
 Identities = 28/53 (52%), Positives = 42/53 (79%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152 VVDCKWLFKVK---NECESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           ++ CKW+FK K   +  E V++KAR+VA+GF Q+EG+DY EIF+PVV+ T++R
Sbjct: 834 IITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSIR 886



 Score = 45.8 bits (107), Expect(2) = 6e-17
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
 Frame = -2

Query: 375 DENEPENE---------NLHDYQLVRDRARR-NIRQPARFDDFHMTSFVFSVFDSIDNSE 226
           ++ EP+ E         ++H   + +DR RR  +R P R+    M  +   V + +D SE
Sbjct: 732 EDQEPQTETDIPESMPSDIHQ-SIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSE 790

Query: 225 PKSYEEALKSKNSADWLNAM 166
           P +Y+EA+ S +S  W  AM
Sbjct: 791 PSTYKEAILSSDSEKWFAAM 810


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 67.4 bits (163), Expect(2) = 8e-17
 Identities = 33/56 (58%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
 Frame = -3

Query: 161  NCSVVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
            N  ++ C+W+FK K      E  RFKARLVAKG+ QKEGIDY EIFAPVVK  ++R
Sbjct: 877  NQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIR 932



 Score = 45.1 bits (105), Expect(2) = 8e-17
 Identities = 25/70 (35%), Positives = 35/70 (50%)
 Frame = -2

Query: 375 DENEPENENLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKS 196
           DE+   N++   Y LVRDR +R IR P RFDD    +      +  +  EP++Y +A   
Sbjct: 787 DEDSDVNQSPLSYHLVRDRDKREIRAPRRFDDEDYYAEALYTTEDGEAVEPENYRKAKLD 846

Query: 195 KNSADWLNAM 166
            N   W  AM
Sbjct: 847 ANFDKWKLAM 856


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score = 62.4 bits (150), Expect(2) = 8e-17
 Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152  VVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
            ++ C+W+F  K      E+ RF ARLVAKGFTQKEG+DY EIF+PVVK  ++R
Sbjct: 859  LIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIR 911



 Score = 50.1 bits (118), Expect(2) = 8e-17
 Identities = 28/74 (37%), Positives = 41/74 (55%)
 Frame = -2

Query: 387 DEILDENEPENENLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEE 208
           +E  +E+    E+L  YQLVRDR RR I+   ++++ +M  F +   D     EPKSY+E
Sbjct: 763 EESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAYYSEDD-GKPEPKSYQE 821

Query: 207 ALKSKNSADWLNAM 166
           AL   +   W  AM
Sbjct: 822 ALLDPDWEKWNAAM 835


>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1363

 Score = 61.2 bits (147), Expect(2) = 1e-15
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152  VVDCKWLFKVKNECESV---RFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
            ++  +W++K K     V   RFKARLVAKG+ Q+EG+DY EIFAPVVK  ++R
Sbjct: 887  IIGSRWIYKYKQGIPGVEEPRFKARLVAKGYAQREGVDYHEIFAPVVKHVSIR 939



 Score = 47.4 bits (111), Expect(2) = 1e-15
 Identities = 25/58 (43%), Positives = 31/58 (53%)
 Frame = -2

Query: 339 YQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSADWLNAM 166
           Y LVRDR RR IR P RFDD    +      +  D  EP  Y+EA++ +N   W  AM
Sbjct: 806 YHLVRDRERREIRAPRRFDDEDYYAEALYTTEDGDAVEPADYKEAVRDENWDKWRLAM 863


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
            gi|7268932|emb|CAB79135.1| putative transposable element
            [Arabidopsis thaliana]
          Length = 1308

 Score = 67.0 bits (162), Expect(2) = 1e-15
 Identities = 31/53 (58%), Positives = 42/53 (79%), Gaps = 3/53 (5%)
 Frame = -3

Query: 152  VVDCKWLFKVKNEC---ESVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
            V+ C+WLFK+K      E+ R+KARLVA+GFTQ++GIDY E+FAPVVK  ++R
Sbjct: 863  VISCRWLFKLKPGIPGVEAQRYKARLVARGFTQQKGIDYEEVFAPVVKHISIR 915



 Score = 41.6 bits (96), Expect(2) = 1e-15
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
 Frame = -2

Query: 387  DEILDENEPENE----------NLHDYQLVRDRARRNIRQPARFDDFHMTSFVFSVFDSI 238
            +EI  E++ EN           +L +YQ  RDR RR    P +  D+   +    + + I
Sbjct: 756  EEIDQESDSENSVTQEPLIASIDLSNYQSARDRERRAPNPPQKLADYTHFALALVMAEEI 815

Query: 237  DNSEPKSYEEALKSKNSADWLNAM 166
            ++ EP+ Y +A K K+   W   M
Sbjct: 816  ESEEPQCYHDAKKDKHWIKWNGGM 839


>emb|CAN71038.1| hypothetical protein VITISV_011062 [Vitis vinifera]
          Length = 646

 Score = 70.9 bits (172), Expect(2) = 2e-15
 Identities = 33/47 (70%), Positives = 41/47 (87%), Gaps = 1/47 (2%)
 Frame = -3

Query: 140 KWLFKVKNECE-SVRFKARLVAKGFTQKEGIDYTEIFAPVVKFTTVR 3
           KW++K+KNE + S R+KARLV KGF QKEGIDYTEIF+PVVK +T+R
Sbjct: 271 KWVYKIKNEHDDSKRYKARLVVKGFQQKEGIDYTEIFSPVVKMSTIR 317



 Score = 37.0 bits (84), Expect(2) = 2e-15
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = -2

Query: 321 RARRNIRQPARFDDFHMTSFVFSVFDSIDNSEPKSYEEALKSKNSADWLNAM 166
           R+ RNIR P R+      S V +     D  EP+ Y+EAL+ +NS+ W  AM
Sbjct: 198 RSSRNIRPPQRY------SPVLNYLLLTDGGEPECYDEALQDENSSKWELAM 243