BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00001145
         (741 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   131   2e-40
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   120   9e-39
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        117   8e-37
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     129   3e-36
gb|AFB73912.1| polyprotein [Citrus sinensis]                          112   3e-35
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...   115   4e-35
gb|AFB73911.1| polyprotein [Citrus sinensis]                          113   2e-34
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   112   3e-34
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...   110   3e-34
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             116   8e-34
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...   121   4e-33
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   100   5e-32
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     100   5e-32
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    115   1e-31
emb|CAA20201.1| putative transposable element [Arabidopsis thali...   102   2e-31
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]     101   3e-31
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...   108   1e-30
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   108   5e-30
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop...   103   4e-29
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]      99   5e-29

>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  131 bits (329), Expect(2) = 2e-40
 Identities = 61/108 (56%), Positives = 84/108 (77%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEN 597
            P+SY+EA++SK+S  WL++M++EM SL  N TW LVP P     VDCKWLFK+K   + +
Sbjct: 914  PRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXD 973

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            E  +YK+RLVAKGF+QKEGIDY E+F+PVVK  ++R++LA+V+ FN E
Sbjct: 974  EPPKYKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLE 1021



 Score = 61.6 bits (148), Expect(2) = 2e-40
 Identities = 42/119 (35%), Positives = 56/119 (47%)
 Frame = +2

Query: 2    PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPN 181
            PR+ KC+FLGY  GVKGYRLW   +   K I SRDV F+ES               G   
Sbjct: 776  PRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAM------------FGQRK 823

Query: 182  KVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNENENVDLH 358
            +   L G S  D   N  VE E    + P+ N V +  E   V    +D N+++++  H
Sbjct: 824  EFGDLAGTSKTDLGANQKVEFE---VDAPMENGVDDTSEEQPV----IDQNDSQSIAAH 875


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  120 bits (302), Expect(2) = 9e-39
 Identities = 60/108 (55%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNE---N 597
            PK+YQEA+ S  +  W+ A+ EEM+SL  N TW LV KP +  VV  KW+FK K     N
Sbjct: 771  PKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGN 830

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            E+ RYKARLVAKGF+QKEG+DY EIF+PVVK +++R++LA VA  + E
Sbjct: 831  EAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLE 878



 Score = 66.6 bits (161), Expect(2) = 9e-39
 Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPN 181
           PR+ KC+FLGYP+GVKGY+LW+  +   K I SRDV FNE D   +S   P  + EG   
Sbjct: 635 PRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQD---MSKQTPAKDVEG--- 688

Query: 182 KVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNENENVD-LH 358
            ++QL             VE E+L   QP   +  +   +    +++V   +NE    L 
Sbjct: 689 -LDQL----------QFEVEHETL---QP---EKSKETSSKTAQEEIVHERQNEPTQGLE 731

Query: 359 DYQLARD 379
            Y L RD
Sbjct: 732 SYNLVRD 738


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  117 bits (292), Expect(2) = 8e-37
 Identities = 55/109 (50%), Positives = 79/109 (72%), Gaps = 4/109 (3%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN--- 597
            P ++ EA++S +   WL AM +EM SL  N TW L+P P N  +++CKW+FK +NE    
Sbjct: 814  PANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK-RNEGIPD 872

Query: 598  -ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
             E  +YKARLVA+GFTQ+EG+D+ EIF+PVVK +++RI+LA+VA  + E
Sbjct: 873  VEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSSIRILLAMVALLDLE 921



 Score = 63.9 bits (154), Expect(2) = 8e-37
 Identities = 42/125 (33%), Positives = 62/125 (49%)
 Frame = +2

Query: 5    RSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPNK 184
            R+ K VF+GYP+GVKGY++W + +   K I SRDV+F+E        S+ L E       
Sbjct: 668  RALKGVFVGYPDGVKGYKIWCKDQG--KCIVSRDVVFHE--------SVLLKESAEHDAG 717

Query: 185  VEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNENENVDLHDY 364
            ++  P  +    SE   V  E L +      +   + E A    +  +V+E    DL +Y
Sbjct: 718  LQDNPAANKRSGSETSKVNVELLTDKSS-EKEAASDDERATAESEEHEVSELPQADLQNY 776

Query: 365  QLARD 379
            QLARD
Sbjct: 777  QLARD 781


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  129 bits (323), Expect(2) = 3e-36
 Identities = 57/108 (52%), Positives = 84/108 (77%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEN 597
            P +Y++A++S  SA W+ AM EEM SLH N+ W LVPKP    +V CKW+F+ K   +E+
Sbjct: 782  PTTYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHED 841

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            +++ YKARLVAKG++QKEG+DY EIF+PVVK T++R++L++ AQ++ E
Sbjct: 842  DAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDME 889



 Score = 50.1 bits (118), Expect(2) = 3e-36
 Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 9/114 (7%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLP-LSEPEGAP 178
           P+S +C+F+G+ +GVKGY+LW       K + SRDV+F+E +   +S + P +++ E   
Sbjct: 641 PKSLECLFIGFEKGVKGYKLW--DIVNEKKVISRDVVFDEREAISISLAKPSVADSEAQV 698

Query: 179 NKVEQLPGLSHIDESENMH-----VETESLP---ENQPVANDVPENHENAVVHD 316
            + EQ      I+E E+        + E  P   +N P+    PE+ + ++  D
Sbjct: 699 EQNEQGNDEVAIEEPEHQQQPTVMAQVEQSPQRGQNSPIP-QAPESFKRSIALD 751


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  112 bits (280), Expect(2) = 3e-35
 Identities = 55/105 (52%), Positives = 75/105 (71%), Gaps = 2/105 (1%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNE-NES 603
            P ++ EAL S + A W+ AM EE+ +LH N TW LVP P     +  KW++K+K + N+ 
Sbjct: 792  PSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGNKWVYKIKRDGNDQ 851

Query: 604  V-RYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFN 735
            V RY+ARLV KG+ QKEGID+ EIF+PVV+ TTVRI+LA+ A F+
Sbjct: 852  VERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFD 896



 Score = 63.2 bits (152), Expect(2) = 3e-35
 Identities = 39/113 (34%), Positives = 55/113 (48%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPN 181
           P+S+KC+FLGY +GVKGYRLW       K + SRDVIF E           L   +G   
Sbjct: 669 PKSRKCIFLGYADGVKGYRLW--DPTAHKIVISRDVIFVEDQ---------LQRKDGDDG 717

Query: 182 KVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNEN 340
            V+        ++SE + V  E+ PEN   +   PE+ E   V  +  +V  +
Sbjct: 718 TVK--------EKSETVPVYVENNPENSDSSEAAPEHEEQEPVESEAPEVRRS 762


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score =  115 bits (288), Expect(2) = 4e-35
 Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEN 597
            PKSY+EALKS     W NAM EEM+S   ++TW L+ KP    ++ CKW+FK+K      
Sbjct: 733  PKSYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGV 792

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            E  RYKARLVAKGF+Q+EGIDY E+F+ VVK  ++R+ML+L+   ++E
Sbjct: 793  EKQRYKARLVAKGFSQQEGIDYNEVFSLVVKHVSIRLMLSLMVNMDYE 840



 Score = 59.7 bits (143), Expect(2) = 4e-35
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 18/144 (12%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPN 181
           PR+ K VF+GYP G+KGYR+WL  E   K  TSR+V+FNE++    + S      E A  
Sbjct: 566 PRAVKGVFMGYPCGIKGYRVWLPKEG--KCTTSRNVVFNETELYKDTLSSADERKEEAEK 623

Query: 182 KVEQLP------GLSH------------IDESENMHVETESLPENQPVANDVPENHENAV 307
           + ++L         SH            +D+S +   ET S       +++  EN E + 
Sbjct: 624 EYKKLKKARKRVSFSHDLLRGPSTSCCDLDDSSSQGGETSS------SSSESSENLEESE 677

Query: 308 VHDDLVDVNENENVDLHDYQLARD 379
           +++++V  +ENE   L DY LARD
Sbjct: 678 MNEEVVG-SENEQ-SLDDYLLARD 699


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  113 bits (283), Expect(2) = 2e-34
 Identities = 55/105 (52%), Positives = 75/105 (71%), Gaps = 2/105 (1%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNE-NES 603
            P ++ EAL S + A W+ AM EE+ +LH N TW LVP P     +  KW++K+K + N+ 
Sbjct: 792  PSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGNKWVYKIKRDGNDQ 851

Query: 604  V-RYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFN 735
            V RY+ARLV KG+ QKEGID+ EIF+PVV+ TTVRI+LA+ A F+
Sbjct: 852  VERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFD 896



 Score = 59.3 bits (142), Expect(2) = 2e-34
 Identities = 37/112 (33%), Positives = 54/112 (48%)
 Frame = +2

Query: 5   RSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPNK 184
           +S++C+FLGY +GVKGYRLW       K + SRDVIF E           L   +G    
Sbjct: 670 KSRRCIFLGYADGVKGYRLW--DPTAHKIVISRDVIFVEDQ---------LQRKDGDDGT 718

Query: 185 VEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNEN 340
           V+        ++SE + V  E+ PEN   +   PE+ E   V  +  +V  +
Sbjct: 719 VK--------EKSETVPVYVENNPENSDSSEAAPEHEEQEPVESEAPEVRRS 762


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  112 bits (279), Expect(2) = 3e-34
 Identities = 54/108 (50%), Positives = 75/108 (69%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNENESV 606
            P++Y+EA++S     W  A  EEM+S+  N+TW ++ KP    V+ CKW+FK K     V
Sbjct: 823  PETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGV 882

Query: 607  ---RYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
               RYKARLVAKGF+Q+EGIDY EIF+PVVK  ++R +L++V QF+ E
Sbjct: 883  EPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDME 930



 Score = 60.1 bits (144), Expect(2) = 3e-34
 Identities = 37/126 (29%), Positives = 66/126 (52%)
 Frame = +2

Query: 2    PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPN 181
            PR+KK +FLGYP+GVK +++WL  +   K + SRD++F E+          +SE +    
Sbjct: 670  PRAKKGIFLGYPDGVKRFKVWLLEDR--KCVVSRDIVFQENQMYKELQKNDMSEEDKQLT 727

Query: 182  KVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNENENVDLHD 361
            +VE+      + E +N+  + E+  E    +N    +   +   D  V+  ++++  L +
Sbjct: 728  EVERT-----LIELKNLSADDENQSEGGDNSNQEQASTTRSASKDKQVEETDSDDDCLEN 782

Query: 362  YQLARD 379
            Y LARD
Sbjct: 783  YLLARD 788


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score =  110 bits (276), Expect(2) = 3e-34
 Identities = 53/108 (49%), Positives = 74/108 (68%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427 PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN--- 597
           PKSY+EA+K      W +AM EEM+S   ++TW L+ KP    ++ CKW+FK+K      
Sbjct: 205 PKSYEEAMKRSKRKQWESAMKEEMDSHQKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGL 264

Query: 598 ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
           E  RYK RLVAKGF+Q+EGIDY E+F+ VVK  ++R+ML+LV   ++E
Sbjct: 265 EKQRYKVRLVAKGFSQQEGIDYNEVFSLVVKHVSIRLMLSLVVNMDYE 312



 Score = 61.2 bits (147), Expect(2) = 3e-34
 Identities = 46/126 (36%), Positives = 69/126 (54%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPN 181
           PR+ K VF+GYP G+KGYR+WL  E   K  TSR+V+FNE +         LS P+G  +
Sbjct: 67  PRAVKGVFMGYPFGIKGYRVWLPEEG--KCTTSRNVVFNEIEL----YKGTLSSPDGRTD 120

Query: 182 KVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNENENVDLHD 361
             +       +++S +   ET S       +++  EN E +  +++ VD +ENE   L D
Sbjct: 121 YYD-------LEDSSSQGGETSS------SSSESSENLEESETNEE-VDGSENEQ-SLDD 165

Query: 362 YQLARD 379
           Y LAR+
Sbjct: 166 YLLARE 171


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  116 bits (291), Expect(2) = 8e-34
 Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 2/105 (1%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKN--ENE 600
            P ++QEA+ S + + W  AM EE+ +LH NNTW LVP P     +  KW+FK+K   +++
Sbjct: 781  PSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPLPQGRKPIGNKWVFKIKRNGDDQ 840

Query: 601  SVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFN 735
              RY+ARLV KG+ QKEGID+ EIF+PVV+ TTVR++LA+ A FN
Sbjct: 841  VERYRARLVVKGYAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFN 885



 Score = 54.3 bits (129), Expect(2) = 8e-34
 Identities = 38/110 (34%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPC--LSASLPLSEPEGA 175
           P+S+KC FLGY +GVKGYRLW       K + SRDVIF E       +  S    +PE  
Sbjct: 659 PKSRKCRFLGYADGVKGYRLW--DPTAHKVVISRDVIFVEDRLQRGEVDDSTEKEKPETT 716

Query: 176 PNKVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLV 325
             +VE+        E+E  H E E      P              H D V
Sbjct: 717 QIQVEE-EFEQDSSEAEPAHEEPEPESSGAPTTRQSDREKRRPTWHSDYV 765


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score =  121 bits (303), Expect(2) = 4e-33
 Identities = 58/108 (53%), Positives = 79/108 (73%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427 PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKN---EN 597
           P+SYQEA + K    W NA +EEM+SL  N TW LV KP N  ++ C+WLFK+K+     
Sbjct: 517 PESYQEATQDKEWLKWKNATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLKSGIPGV 576

Query: 598 ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
           E VR+KARLVAKG+TQ+EG+DY EIFAPVVK T++R+++++V   + E
Sbjct: 577 EPVRFKARLVAKGYTQREGVDYQEIFAPVVKHTSIRVLMSVVVDQDME 624



 Score = 47.4 bits (111), Expect(2) = 4e-33
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPN 181
           PR+ K +F+GYP G KGY++WL  E   K + SR+VIF E           L++ E    
Sbjct: 365 PRAIKGIFIGYPSGTKGYKVWLLEEQ--KCVISRNVIFQEE-----VVYKDLNDKETVVK 417

Query: 182 KVE-QLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNENENVDLH 358
           K + +    +H+  S+   V  +    +     +  EN E      +  D        L 
Sbjct: 418 KEDIRTQTDNHLVISKTKEVSDQGGVTHIEECEESDENDEQEPETVNETDPTVESEGSLA 477

Query: 359 DYQLARD 379
           +YQLA+D
Sbjct: 478 NYQLAKD 484


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score = 99.8 bits (247), Expect(2) = 5e-32
 Identities = 45/108 (41%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEN 597
            P +Y EA+ S +   W+ AM++EM SL  N+TW  V  P     + CKW+FK K   + +
Sbjct: 851  PSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPS 910

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            +  RYKARLVAKG++Q  GID+ ++F+P++K +++R +L +VA  ++E
Sbjct: 911  DEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYE 958



 Score = 65.1 bits (157), Expect(2) = 5e-32
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
 Frame = +2

Query: 2    PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNES----DFPCLSASLPLSEPE 169
            PR+ KC+FLGYP GVKGY+LW       K + SR+V+F+ES    D P  S ++P+   E
Sbjct: 712  PRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQE 767

Query: 170  GAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHD 316
             A  +VE L    H  E EN+ +  ++       ++ V ++ + ++  D
Sbjct: 768  KASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKD 816


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score = 99.8 bits (247), Expect(2) = 5e-32
 Identities = 45/108 (41%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEN 597
            P +Y EA+ S +   W+ AM++EM SL  N+TW  V  P     + CKW+FK K   + +
Sbjct: 851  PSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPS 910

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            +  RYKARLVAKG++Q  GID+ ++F+P++K +++R +L +VA  ++E
Sbjct: 911  DEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYE 958



 Score = 65.1 bits (157), Expect(2) = 5e-32
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 4/109 (3%)
 Frame = +2

Query: 2    PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNES----DFPCLSASLPLSEPE 169
            PR+ KC+FLGYP GVKGY+LW       K + SR+V+F+ES    D P  S ++P+   E
Sbjct: 712  PRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVILHDKP--STNVPVESQE 767

Query: 170  GAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHD 316
             A  +VE L    H  E EN+ +  ++       ++ V ++ + ++  D
Sbjct: 768  KASVQVEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKD 816


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  115 bits (287), Expect(2) = 1e-31
 Identities = 56/108 (51%), Positives = 77/108 (71%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN--- 597
            P+SYQEA   K    W  A +EEM+SL  N TW+LV KP N  ++ C+WLFK+K+ +   
Sbjct: 846  PQSYQEATSDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGV 905

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            E VRYKA+LVAKG+T +EG+DY EIFA VVK T++RI++++V   + E
Sbjct: 906  EPVRYKAQLVAKGYTHREGVDYQEIFALVVKHTSIRILMSVVVDQDLE 953



 Score = 48.5 bits (114), Expect(2) = 1e-31
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 10/136 (7%)
 Frame = +2

Query: 2    PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNE---------SDFPCLSASLP 154
            PR+ K +F+GYP G KGY++WL  E   K + SR+V+F+E          +    S + P
Sbjct: 692  PRALKGIFIGYPAGTKGYKIWLLEE--HKCVISRNVLFHEESVYKDTMKKERVVESEAEP 749

Query: 155  LSEPEGAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVN 334
             S  +    KV + PG  +++  E + V  E   +        PE           V++ 
Sbjct: 750  ASHSKSTLIKV-KTPG--NLNSGEVIQVSDEEESDESVEEEQEPETQ---------VELP 797

Query: 335  ENENV-DLHDYQLARD 379
            E +    L +YQLARD
Sbjct: 798  ETQTTSSLANYQLARD 813


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
            gi|7268932|emb|CAB79135.1| putative transposable element
            [Arabidopsis thaliana]
          Length = 1308

 Score =  102 bits (255), Expect(2) = 2e-31
 Identities = 51/108 (47%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN--- 597
            P+ Y +A K K+   W   M EE++SL  N TW +V  P    V+ C+WLFK+K      
Sbjct: 820  PQCYHDAKKDKHWIKWNGGMKEEIDSLLKNGTWDIVEWPKEQKVISCRWLFKLKPGIPGV 879

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            E+ RYKARLVA+GFTQ++GIDY E+FAPVVK  ++RI+++ V + + E
Sbjct: 880  EAQRYKARLVARGFTQQKGIDYEEVFAPVVKHISIRILMSAVVKDDME 927



 Score = 60.1 bits (144), Expect(2) = 2e-31
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
 Frame = +2

Query: 2    PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESD-FPCLSASLPLSEPEGAP 178
            PR+ K VFLGYP+G KGY++WL  E   K + SR+++FNE+  +  +  S      E + 
Sbjct: 673  PRALKGVFLGYPQGTKGYKVWLLDEE--KCVISRNIVFNENQVYKDIRES-----SEQSV 725

Query: 179  NKVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNENENVDLH 358
              +  L G +    S   H E            D   + EN+V  + L+      ++DL 
Sbjct: 726  KDISDLEGYNEFQVSVKEHGECSKTGGVTIEEIDQESDSENSVTQEPLI-----ASIDLS 780

Query: 359  DYQLARD 379
            +YQ ARD
Sbjct: 781  NYQSARD 787


>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1211

 Score =  101 bits (251), Expect(2) = 3e-31
 Identities = 47/108 (43%), Positives = 73/108 (67%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEN 597
            P +Y EA+ S     W+ AM++EM SL  N+TW LV  P     + CKW+FK K   + +
Sbjct: 695  PSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPS 754

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            +  RYKARLVAKG++Q  GID+ ++F+PV+K +++R +L++VA  ++E
Sbjct: 755  DEARYKARLVAKGYSQIPGIDFNDVFSPVLKHSSIRTLLSIVAVHDYE 802



 Score = 60.8 bits (146), Expect(2) = 3e-31
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNES----DFPCLSASLPLSEPE 169
           PR+ KC+FLGYP GVK Y+LW       K + SR+V+F+ES    D P  S ++P+   E
Sbjct: 556 PRAIKCIFLGYPSGVKDYKLWCPKTK--KVVISRNVVFHESVMLHDKP--STNVPVESQE 611

Query: 170 GAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHD 316
            A  +VE L    H  E E++ +  ++       ++ V ++ + ++  D
Sbjct: 612 KASVQVEHLISSGHAPEKEDVAINQDASVIEDSDSSAVQQSPKRSIAKD 660


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  108 bits (270), Expect(2) = 1e-30
 Identities = 53/108 (49%), Positives = 75/108 (69%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN--- 597
            P++Y++A    N   W  AM+EE++S   NNTW +V +P N  ++ C+W+FK K      
Sbjct: 837  PENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYKLGILGV 896

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            E  R+KARLVAKG+ QKEGIDY EIFAPVVK  ++R++L++VAQ + E
Sbjct: 897  EEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLE 944



 Score = 51.6 bits (122), Expect(2) = 1e-30
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
 Frame = +2

Query: 2    PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNESDFPCLSASLPLSEPEGAPN 181
            PR+KK V +GYP GVKGY++W+  E   K + SR++IF E+    +   L   +   +  
Sbjct: 683  PRAKKGVLIGYPVGVKGYKVWILDER--KCVVSRNIIFQEN---AVYKDLMQRQENVSTE 737

Query: 182  KVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNENENVDLH- 358
            + +Q       D      V +     +Q + N +P      V      D N++E+ D++ 
Sbjct: 738  EDDQTGSYLEFDLEAERDVISGG---DQEMVNTIPAPESPVVSTPTTQDTNDDEDSDVNQ 794

Query: 359  ---DYQLARD 379
                Y L RD
Sbjct: 795  SPLSYHLVRD 804


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  108 bits (271), Expect(2) = 5e-30
 Identities = 55/108 (50%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN--- 597
            PKSYQEAL   +   W  AM EEM S+  N+TW LV KP    ++ C+W+F  K      
Sbjct: 816  PKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGV 875

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            E+ R+ ARLVAKGFTQKEG+DY EIF+PVVK  ++R +L++V  +N E
Sbjct: 876  EAPRFIARLVAKGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNME 923



 Score = 49.3 bits (116), Expect(2) = 5e-30
 Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
 Frame = +2

Query: 2    PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNES-DFPCLSASLPLSEPEGAP 178
            PRSKK +F  YPEGVKGY++W+  +   K + SR+VIF E   F  L      +  E   
Sbjct: 659  PRSKKGIFTSYPEGVKGYKVWVLEDK--KCVISRNVIFREQVMFKDLKGDSQNTISESDL 716

Query: 179  NKVEQLPGLSHID------ESENMHVETESLPENQPVANDVPENHENAVVHDDLVDVNEN 340
              +   P ++  +       +++    +E+   + PV N    + +     +D   V   
Sbjct: 717  EDLRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNPVLNSPTHSQDEESEEEDSDAVE-- 774

Query: 341  ENVDLHDYQLARD 379
               DL  YQL RD
Sbjct: 775  ---DLSTYQLVRD 784


>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1137

 Score =  103 bits (258), Expect(2) = 4e-29
 Identities = 51/108 (47%), Positives = 73/108 (67%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427 PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVKNEN--- 597
           P  YQ+AL+  +   WL A++EE+ SL  NNTW+LV +      + CKW+FK K+     
Sbjct: 634 PNDYQKALQDSDYKMWLKAVDEEIESLLKNNTWVLVNRDQFQKPIGCKWVFKRKSGIVGV 693

Query: 598 ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
           E  R+KARLV KG++QKEGIDY EIF+PVVK  ++R++L++V   + E
Sbjct: 694 EKPRFKARLVVKGYSQKEGIDYQEIFSPVVKHVSIRLLLSMVTHCDME 741



 Score = 51.2 bits (121), Expect(2) = 4e-29
 Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 26/142 (18%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNES----------------DFP 133
           PR+KK VF+GYP GVKG+R+W+  E   +   SR+V+F E                 DFP
Sbjct: 477 PRAKKGVFVGYPNGVKGFRVWMIEEE--RCSISRNVVFREDVMYKDILNQSTSGMSFDFP 534

Query: 134 CLSASLPLSEPEG--APNKVEQLPGLSHID---ESENMHVETESLPENQ-----PVANDV 283
             +  +P  E  G    +++    G+S  D    SE   + T S  +N       +A D 
Sbjct: 535 LATNRIPSFECAGNRKEDEISVQGGVSDDDTKQSSEESPISTGSSGQNSGQRTYQIARDK 594

Query: 284 PENHENAVVHDDLVDVNENENV 349
           P+      + D L D   NE V
Sbjct: 595 PKRQTK--IPDKLRDYELNEEV 614


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score = 98.6 bits (244), Expect(2) = 5e-29
 Identities = 45/108 (41%), Positives = 73/108 (67%), Gaps = 3/108 (2%)
 Frame = +1

Query: 427  PKSYQEALKSKNSADWLNAMNEEMNSLHVNNTWILVPKPANCSVVDCKWLFKVK---NEN 597
            P +Y +A+ S +   W+ AM++EM SL  N++W L   P     + CKW+FK K   + +
Sbjct: 725  PSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPS 784

Query: 598  ESVRYKARLVAKGFTQKEGIDYTEIFAPVVKFTTVRIMLALVAQFNWE 741
            +  RYKARLVAKG++Q  GID+ ++F+PVVK +++R +L++VA  ++E
Sbjct: 785  DEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYE 832



 Score = 56.2 bits (134), Expect(2) = 5e-29
 Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
 Frame = +2

Query: 2   PRSKKCVFLGYPEGVKGYRLWLRGEPGFKTITSRDVIFNES----DFPCLSASLPLSEPE 169
           PR  KC+FLGY  GVKGY+LW       K + SR+V+F+ES    D P  S ++P+   E
Sbjct: 586 PRVIKCIFLGYLSGVKGYKLWCPETK--KVVISRNVVFHESIMLHDKP--STNVPVESQE 641

Query: 170 GAPNKVEQLPGLSHIDESENMHVETESLPENQPVANDVPENHENAVVHD 316
               +VE L    H  E E++ +  ++       ++ V ++ + ++  D
Sbjct: 642 KVSVQVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKD 690