BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00001033
         (1195 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   385   e-104
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   383   e-104
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...   375   e-101
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           375   e-101
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]               367   4e-99
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   365   3e-98
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   362   1e-97
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                359   1e-96
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   358   2e-96
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       353   1e-94
emb|CAB72467.1| putative protein [Arabidopsis thaliana]               352   1e-94
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   352   2e-94
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   350   9e-94
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   345   2e-92
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...   345   3e-92
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   345   3e-92
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...   339   2e-90
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   332   2e-88
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   326   1e-86
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...   317   5e-84

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  385 bits (990), Expect = e-104
 Identities = 178/392 (45%), Positives = 257/392 (65%)
 Frame = +1

Query: 4    EVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVAL 183
            E+  AL  + +DK+ G DGF++ FFKK+W  +  +  A ++EFF + ++ +  N  +V L
Sbjct: 442  EIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTL 501

Query: 184  IPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNIH 363
            +PK  H   V +FRPI+CC+V YK+ISK+L  R+  ++G ++NEAQ+ F+ GR I DNI 
Sbjct: 502  LPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNIL 561

Query: 364  LMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTST 543
            L  EL+RGY RK +SPRCI+K+D++KA+DSV W FLE +L    FP  F+ W+MECV++ 
Sbjct: 562  LASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTV 621

Query: 544  SFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRPL 723
            S+S+ VNG     FQ +KGLRQGDP+SP+LF +C+EYLSR L++      F FHPKC  L
Sbjct: 622  SYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNFHPKCERL 681

Query: 724  RITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRDI 903
             ITHL FADDL++  R D +S+  +    + F + SGL  +  KSNI+  G+ +   R++
Sbjct: 682  NITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEKSNIYFCGVDDETAREL 741

Query: 904  LSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIRS 1083
              + ++  G +PFRYLG+PLT+++L  A  + L   I      W A  LSYAGR +LI+S
Sbjct: 742  ADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKS 801

Query: 1084 VLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            +L  ++ YW  IFPL   V   + K+CR FLW
Sbjct: 802  ILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLW 833


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  383 bits (983), Expect = e-104
 Identities = 186/393 (47%), Positives = 268/393 (68%)
 Frame = +1

Query: 4    EVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVAL 183
            ++ S    +  +KS GPDG++S+FFKKTW+IVG   +AAV+EFF SG+LL QWN   V +
Sbjct: 450  DIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTM 509

Query: 184  IPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNIH 363
            +PK  +   +++FRPISCC+  YKVISK+LA RL ++L   I+ +Q+AFVKGR + +N+ 
Sbjct: 510  VPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENVL 569

Query: 364  LMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTST 543
            L  EL++G+ +  IS R ++K+DL+KAFDSV W F+ E LK  + PP F++W+ +C+TST
Sbjct: 570  LATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITST 629

Query: 544  SFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRPL 723
            SFS++V+G L G+F+G KGLRQGDPLSP LFVI +E LSRLL+ +       +HPK   +
Sbjct: 630  SFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEV 689

Query: 724  RITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRDI 903
            RI+ LAFADDLM+   G  +S+R +   +E F N SGL MN  KS ++ AG+++ D  D 
Sbjct: 690  RISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTEKSAVYTAGLEDTDKEDT 749

Query: 904  LSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIRS 1083
            L+F  ++ G+ PFRYLG+PL   +L+ + + +L  KI    + W+  TLS+AGR +LI S
Sbjct: 750  LAFGFVN-GTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISS 808

Query: 1084 VLQGVECYWISIFPLPDTVCTKIIKLCRNFLWG 1182
            V+     +W+S F LP      I ++C  FLWG
Sbjct: 809  VIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWG 841


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 1072

 Score =  375 bits (963), Expect = e-101
 Identities = 183/396 (46%), Positives = 264/396 (66%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            +E+ +A K++  +K+SGPDG+S +FF+ TW+I+G + LAA+ EFF SGQLLKQWN   + 
Sbjct: 310  DEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLV 369

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPKT++  T+S+FRPISC +  YKVISK+L +RL  +L  +I  +Q+AF+ GRS+ +N+
Sbjct: 370  LIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENV 429

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  E++ GYNR  ISPR ++K+DLKKAFDSV W+F+   L+ L  P  +I+W+ +C+T+
Sbjct: 430  LLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITT 489

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             SF++SVNG   G F+  KGLRQGDPLSPYLFV+ +E  S+LL  R D     +HPK   
Sbjct: 490  PSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGD 549

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            L I+HL FADD+M+   G  +S+  + E ++DF + SGL++N  KS +F AG+ +   R 
Sbjct: 550  LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL-DLSERI 608

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
              +      G+ P RYLG+PL   +L++A +  L  K+   +  W +  LS+AGR +LI 
Sbjct: 609  TSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLIS 668

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLWGTS 1188
            SV+ G+  +W+S F LP     KI  LC  FLW  S
Sbjct: 669  SVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGS 704


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  375 bits (963), Expect = e-101
 Identities = 183/396 (46%), Positives = 264/396 (66%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            +E+ +A K++  +K+SGPDG+S +FF+ TW+I+G + LAA+ EFF SGQLLKQWN   + 
Sbjct: 310  DEIKAAFKSLPRNKTSGPDGYSVEFFRDTWSIIGPEVLAAIHEFFDSGQLLKQWNATTLV 369

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPKT++  T+S+FRPISC +  YKVISK+L +RL  +L  +I  +Q+AF+ GRS+ +N+
Sbjct: 370  LIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAENV 429

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  E++ GYNR  ISPR ++K+DLKKAFDSV W+F+   L+ L  P  +I+W+ +C+T+
Sbjct: 430  LLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCITT 489

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             SF++SVNG   G F+  KGLRQGDPLSPYLFV+ +E  S+LL  R D     +HPK   
Sbjct: 490  PSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLLYSRYDSGYIHYHPKAGD 549

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            L I+HL FADD+M+   G  +S+  + E ++DF + SGL++N  KS +F AG+ +   R 
Sbjct: 550  LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNKDKSQLFQAGL-DLSERI 608

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
              +      G+ P RYLG+PL   +L++A +  L  K+   +  W +  LS+AGR +LI 
Sbjct: 609  TSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLRSWVSKALSFAGRTQLIS 668

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLWGTS 1188
            SV+ G+  +W+S F LP     KI  LC  FLW  S
Sbjct: 669  SVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGS 704


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score =  367 bits (943), Expect = 4e-99
 Identities = 186/396 (46%), Positives = 258/396 (65%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            EE+ + L ++  DKS GPDG++S+F+K TW I+G +F   V+ FF  G L K  N  I+A
Sbjct: 103  EEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIGQEFTLPVQSFFQKGFLPKGINSIILA 162

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK      + D+RPISCC+V YKVISKI+A RL  +L   I E Q+AFVK R +++N+
Sbjct: 163  LIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENL 222

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  EL++ Y++  IS RC IKID+ KAFDSV W FL   L  ++F P FI W+  C+T+
Sbjct: 223  LLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITT 282

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             SFS+ VNG L G+FQ K+GLRQG  LSPYLFVIC++ LS++L K      F FHPKC+ 
Sbjct: 283  ASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQR 342

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            L +THL+FADDLM+LS G   S+  +LE  ++F  +SGLR+++ KS ++MAG+     ++
Sbjct: 343  LGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQE 402

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
            I +      G +P RYLG+PL  +RL  A +  L  +I+  I  W+    S+AGR  LI+
Sbjct: 403  IAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFRFFSFAGRFNLIK 462

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLWGTS 1188
            SVL  +  +W++ F LP     +I KLC +FLW  S
Sbjct: 463  SVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGS 498


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  365 bits (936), Expect = 3e-98
 Identities = 172/393 (43%), Positives = 249/393 (63%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            +E+  AL +++D K+ G DGF+S FFKK+W ++  +    + +FF +G + K  N   V 
Sbjct: 444  QEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVT 503

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK        D+RPI+CCS  YK+ISKIL  RL +V+  +++ AQ  F+  R I DNI
Sbjct: 504  LIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNI 563

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  EL+RGYNR+ +SPRC+IK+D++KA+DSV W FLE MLK L FP +FI W+M CV +
Sbjct: 564  LLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKT 623

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             S+S+ +NG     F  +KGLRQGDPLSP+LF + +EYLSR +        F FHPKC  
Sbjct: 624  VSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCER 683

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            +++THL FADDL++ +R D +S+  ++     F   SGL+ ++ KS I+  G+   +   
Sbjct: 684  IKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQ 743

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
            +     +  GS+PFRYLG+PL +++L  +  + L  KI T   GW A  LSYAGR +L++
Sbjct: 744  LADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAGRLQLVK 803

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            ++L  ++ YW  IFPLP  +   +   CR FLW
Sbjct: 804  TILYSMQNYWGQIFPLPKKLIKAVETTCRKFLW 836


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  362 bits (930), Expect = 1e-97
 Identities = 181/393 (46%), Positives = 251/393 (63%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            EE+   L  +  DKS GPDG++S+FFK TW I+G++F  AV+ FF  G L K  N  I+A
Sbjct: 456  EEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILA 515

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK T    + D+RPISCC+V YKVISKI+A RL  VL   I   Q+AFVK R +++N+
Sbjct: 516  LIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENL 575

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  EL++ Y++  IS RC IKID+ KAFDSV W FL  +   L FP  FI W+  C+T+
Sbjct: 576  LLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITT 635

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             SFS+ VNG L G+FQ  +GLRQG  LSPYLFVIC++ LS++L K      F +HPKC+ 
Sbjct: 636  ASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKT 695

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            + +THL+FADDLM+LS G   S+  +++  ++F   SGLR+++ KS +++AG+      +
Sbjct: 696  MGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNE 755

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
            +      S G +P RYLG+PL  +RL       L  ++R  I  W++  LSYAGR  LI 
Sbjct: 756  VADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLIS 815

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            SVL  +  +W++ F LP     ++ K+C  FLW
Sbjct: 816  SVLWSICNFWLAAFRLPRKCIRELEKMCSAFLW 848


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score =  359 bits (922), Expect = 1e-96
 Identities = 178/393 (45%), Positives = 252/393 (64%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            EE    L  +  +K  GPDG++S+FFK TW+I G DF+AA+K FF  G L K  N  I+A
Sbjct: 29   EENQKVLFAMPSNKFPGPDGYTSEFFKATWSITGQDFIAAIKSFFIKGFLPKGLNATILA 88

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK      + D+RPISCC+V YKVISKI+A RL  +L   I + Q+AFV+ R +++N+
Sbjct: 89   LIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLIENV 148

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  EL++ Y++  ISPRC +KID+ KAFDSV W+FL   L+ L+FP  F  W+  C+++
Sbjct: 149  LLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCIST 208

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             +FS+ VNG L G F  K+GLRQG  LSPYLFVIC+  LS ++          +HPKC+ 
Sbjct: 209  ATFSVQVNGELAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIGYHPKCKK 268

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            L +THL FADDLM+   G   SV  ++   ++F  KSGL +++ KS +++AG+ E +  +
Sbjct: 269  LSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTLYLAGVSELNRNN 328

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
            ILS    + G +P RYLG+PL  +++  A +  L  K+R+ I  W+A +LSYAGR  LI 
Sbjct: 329  ILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYAGRLALIN 388

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            SV+  +  +W+S + LP     +I KLC  FLW
Sbjct: 389  SVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLW 421


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  358 bits (919), Expect = 2e-96
 Identities = 175/395 (44%), Positives = 253/395 (64%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            E++ +A  ++  +K+SGPDGFS +FF   W I+G +   A+ EFF SG+LLKQWN   + 
Sbjct: 347  EQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLV 406

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK T+  ++SDFRPISC +  YKVISK+L  RL   L   I+ +Q+AF+ GR  ++N+
Sbjct: 407  LIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENV 466

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  EL+ GYN+K I+P  ++K+DL+KAFDSV W F+   L+ L+ P  F  W++EC+++
Sbjct: 467  LLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLST 526

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             SFS+ +NG   GHF   KGLRQGDP+SPYLFV+ +E  S LL+ R       +HPK   
Sbjct: 527  ASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQ 586

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            L I+HL FADD+M+   G  +S+  ++E +EDF   SGL MN  K+ ++ AG+ + ++  
Sbjct: 587  LEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDS 646

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
            + S+     GS+P RYLG+PL + +L +A +  L  KI    + W    LS+AGR +L+ 
Sbjct: 647  MASY-GFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLA 705

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLWGT 1185
            SV+ G+  +WIS F LP     KI  LC  FLW +
Sbjct: 706  SVISGIVNFWISSFILPLGCIKKIESLCSRFLWSS 740


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  353 bits (905), Expect = 1e-94
 Identities = 174/393 (44%), Positives = 258/393 (65%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            E++ +AL ++  +KS GPDGF+++FF  +W+IVG +   A+KEFF+SG LLKQWN   + 
Sbjct: 450  EDIRAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEFFSSGCLLKQWNATTIV 509

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK  +    SDFRPISC +  YKVI+++L  RL  +L  +I+ AQ+AF+ GRS+ +N+
Sbjct: 510  LIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENV 569

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  +L+ GYN   ISPR ++K+DLKKAFDSV W+F+   L+ L  P  FI+W+ +C+++
Sbjct: 570  LLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCIST 629

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             +F++S+NGG  G F+  KGLRQGDPLSPYLFV+ +E  S LL  R +     +HPK   
Sbjct: 630  PTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLLHSRYESGLIHYHPKASN 689

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            L I+HL FADD+M+   G   S+  + E ++DF + SGL++N  KS++++AG+ + ++  
Sbjct: 690  LSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNA 749

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
              ++     G++P RYLG+PL   +L++A +E L  KI      W    LS+AGR +LI 
Sbjct: 750  NAAY-GFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLIS 808

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            SV+ G   +W+S F LP     +I  LC  FLW
Sbjct: 809  SVIFGSINFWMSTFLLPKGCIKRIESLCSRFLW 841


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score =  352 bits (904), Expect = 1e-94
 Identities = 178/393 (45%), Positives = 249/393 (63%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            EE+   L ++ +DKS GPDGF+S+FFK++W I+G +F+ A++ FFA G L K  N  I+A
Sbjct: 9    EEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNSTILA 68

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK      + D+RPISCC+V YKVISKILA RL  +L   I   Q++FVK R +++N+
Sbjct: 69   LIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFIAGNQSSFVKDRLLIENV 128

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  +L++ Y++  IS RC IKID+ KA DSV W FL   L  + FP +FI W+  C+T+
Sbjct: 129  LLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITT 188

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             SFS+ VNG L G FQ  +GLRQG  LSPYLFVIC++ LS+LL K        +HP C+ 
Sbjct: 189  PSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLLDKVVGIGRIGYHPHCKR 248

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            + +THL+FADDLM+L+ G   S+  ++E  + F   SGL++++ KS IF AG+       
Sbjct: 249  MGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLSSTSRAQ 308

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
            + +      G +P RYLG+PL  +RL    +  L  +IR  I  WS+  LS+AGR  LI 
Sbjct: 309  LHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLIS 368

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            S++     +W+S F LP     +I KLC +FLW
Sbjct: 369  SIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLW 401


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  352 bits (903), Expect = 2e-94
 Identities = 171/393 (43%), Positives = 252/393 (64%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            EE+   L  + ++KS GPDG++S+FFK TW++ G DF+AA++ FF  G L K  N  I+A
Sbjct: 753  EEIQKVLFAMPNNKSPGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILA 812

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK      + D+RPISCC+V YKVISKILA RL  +L   I + Q+AFVK R +++N+
Sbjct: 813  LIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENV 872

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  EL++ Y+++ ++PRC +KID+ KAFDSV W+FL   L+ L+FP  F  W+  C+++
Sbjct: 873  LLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCIST 932

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             +FS+ VNG L G F   +GLRQG  LSPYLFVIC+  LS ++ +        +HPKC  
Sbjct: 933  ATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEK 992

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            + +THL FADDLM+   G   S+  ++   ++F  +SGL++++ KS I++AG+   D   
Sbjct: 993  IGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQ 1052

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
             LS    + G +P RYLG+PL  +++  A +  L   ++T I  W+A +LSYAGR  L+ 
Sbjct: 1053 TLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLN 1112

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            SV+  +  +W+S + LP     +I KLC  FLW
Sbjct: 1113 SVIVSIANFWMSAYRLPAGCIREIEKLCSAFLW 1145


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  350 bits (897), Expect = 9e-94
 Identities = 171/393 (43%), Positives = 257/393 (65%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            EE+   + ++ +DKS GPDG++++F+K  W I+G +F+ A++ FFA G L K  N  I+A
Sbjct: 344  EEIHKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILA 403

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK      + D+RPISCC+V YKVISKI+A RL  VL   I   Q+AFVK R +++N+
Sbjct: 404  LIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENV 463

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  E+++ Y++  +S RC +KID+ KAFDSV WKFL  +L+ ++FPP F  W+  C+T+
Sbjct: 464  LLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITT 523

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             SFS+ VNG L G F   + LRQG  LSPYLFVI ++ LS++L K      F +HPKCR 
Sbjct: 524  ASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRA 583

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            + +THL+FADDLM+LS G   S+  +++ + +F   SGL++++ KS +++AG++    ++
Sbjct: 584  IGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQE 643

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
            I+   +   G +P RYLG+PL ++RL  +    L  ++R  I+ W++  LS+AGR  LI 
Sbjct: 644  IVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLIS 703

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            S L  +  +W++ F LP     +I KLC  FLW
Sbjct: 704  STLWSICNFWMAAFRLPRACIREIDKLCSAFLW 736


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
            [Arabidopsis thaliana]
          Length = 893

 Score =  345 bits (886), Expect = 2e-92
 Identities = 174/395 (44%), Positives = 256/395 (64%)
 Frame = +1

Query: 4    EVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVAL 183
            ++  A  ++  +K+SGPDG+SS+FFK  W +VG +   AV+EFF SGQLLKQWN   + L
Sbjct: 452  DIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVL 511

Query: 184  IPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNIH 363
            IPK T+   ++DFRPISC +  YKVI+K+L +RL  +L  +I+ +Q+AF+ GR + +N+ 
Sbjct: 512  IPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVL 571

Query: 364  LMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTST 543
            L  E++ GYN K IS R ++K+DL+KAFDSV W F+    + L  P  F+ W+ +C+++ 
Sbjct: 572  LATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTP 631

Query: 544  SFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRPL 723
             FS+ VNG   G F+  KGLRQGDPLSPYLFV+ +E  S LLK R D    ++HPK   L
Sbjct: 632  YFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIQYHPKTADL 691

Query: 724  RITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRDI 903
             I+HL FADD+M+   G  +S+  + E ++DF + SGL +N  K+N+++AG  E +   I
Sbjct: 692  SISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAI 751

Query: 904  LSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIRS 1083
             S       ++P RYLG+PL + +LK++ + EL ++ R+    W+  +LS+AGR +LI S
Sbjct: 752  -SHYGFPISTLPIRYLGLPLMSRKLKISEY-ELVKRFRS----WAVKSLSFAGRVQLITS 805

Query: 1084 VLQGVECYWISIFPLPDTVCTKIIKLCRNFLWGTS 1188
            V+ G+  +W+S F L      KI  LC  FLW  S
Sbjct: 806  VITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGS 840


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
            subsp. vesca]
          Length = 958

 Score =  345 bits (884), Expect = 3e-92
 Identities = 172/395 (43%), Positives = 248/395 (62%), Gaps = 2/395 (0%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAA-VKEFFASGQLLKQWNHAIV 177
            +++ +   ++  +KS GPDGF+  FF+K W ++G++ +AA VKEFF+ G LL + N  I+
Sbjct: 276  DDIRAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFFSYGSLLMELNSTII 335

Query: 178  ALIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDN 357
             L+PK  +  T+SDFRPISCC+ FYK+I+K+LA RL   L  I+  +Q+ F+ GR I DN
Sbjct: 336  TLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDN 395

Query: 358  IHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVT 537
            I L QE++  Y++    PRC   +D+ KA D+V W F+   L+  + P   I W+  C++
Sbjct: 396  ILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCIS 455

Query: 538  STSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSG-FKFHPKC 714
            S  FS+ VNG L G F  ++GLRQGDPLSPYLFVI +E LS  +++R + S  F++H +C
Sbjct: 456  SAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRYHWRC 515

Query: 715  RPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDT 894
              L ++HL FADDL++   GD NSVR L +   +F + S L+ NV +S IF+AG+    +
Sbjct: 516  DQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKANVSESKIFLAGVDGNSS 575

Query: 895  RDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAEL 1074
              +L  +N S G+ P RYLGIPL   +L++     L  +I T I  W    LS+AGR +L
Sbjct: 576  DSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRIKSWENKVLSFAGRLQL 635

Query: 1075 IRSVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            I+SVL  ++ YW S   LP  V   I K  R FLW
Sbjct: 636  IQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLW 670


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 893

 Score =  345 bits (884), Expect = 3e-92
 Identities = 174/395 (44%), Positives = 255/395 (64%)
 Frame = +1

Query: 4    EVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVAL 183
            ++  A  ++  +K+SGPDG+SS+FFK  W +VG +   AV+EFF SGQLLKQWN   + L
Sbjct: 452  DIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFFRSGQLLKQWNATTLVL 511

Query: 184  IPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNIH 363
            IPK T+   ++DFRPISC +  YKVI+K+L +RL  +L  +I+ +Q+AF+ GR + +N+ 
Sbjct: 512  IPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVL 571

Query: 364  LMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTST 543
            L  E++ GYN K IS R ++K+DL+KAFDSV W F+    + L  P  F+ W+ +C+++ 
Sbjct: 572  LATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTP 631

Query: 544  SFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRPL 723
             FS+ VNG   G F+  KGLRQGDPLSPYLFV+ +E  S LLK R D     +HPK   L
Sbjct: 632  YFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARFDAGYIHYHPKTADL 691

Query: 724  RITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRDI 903
             I+HL FADD+M+   G  +S+  + E ++DF + SGL +N  K+N+++AG  E +   I
Sbjct: 692  SISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNKDKTNLYLAGTDEVEALAI 751

Query: 904  LSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIRS 1083
             S       ++P RYLG+PL + +LK++ + EL ++ R+    W+  +LS+AGR +LI S
Sbjct: 752  -SHYGFPISTLPIRYLGLPLMSRKLKISEY-ELVKRFRS----WAVKSLSFAGRVQLITS 805

Query: 1084 VLQGVECYWISIFPLPDTVCTKIIKLCRNFLWGTS 1188
            V+ G+  +W+S F L      KI  LC  FLW  S
Sbjct: 806  VITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSGS 840


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1216

 Score =  339 bits (869), Expect = 2e-90
 Identities = 167/393 (42%), Positives = 251/393 (63%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            EE+   + ++  DKS GPDG++S+F+K +W I+G++ + A++ FFA G L K  N  I+A
Sbjct: 177  EEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILA 236

Query: 181  LIPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNI 360
            LIPK      + D+RPISCC+V YK ISKILA RL  +L   I   Q+AFVK R +++N+
Sbjct: 237  LIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENV 296

Query: 361  HLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTS 540
             L  EL++ Y++  IS RC +KID+ KAFDS+ W FL  +L  ++FP  FI W+  C+++
Sbjct: 297  LLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMST 356

Query: 541  TSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRP 720
             SFS+ VNG L G+F+  +GLRQG  LSPYLFVI ++ LSR+L K      F +HP+C+ 
Sbjct: 357  ASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKT 416

Query: 721  LRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRD 900
            L +THL FADDLM+L+ G   SV  +++ +  F  K GL++ + K+ +++AG+ +   + 
Sbjct: 417  LGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVSDHSRQL 476

Query: 901  ILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIR 1080
            + S  +   G +P RYLG+PL  +RL  + +  L  +IR  I  W++  LS+AGR  LI 
Sbjct: 477  MSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLIN 536

Query: 1081 SVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            SVL  +  +W++ F LP     +I ++    LW
Sbjct: 537  SVLWSITNFWMNAFRLPRECINEINRISSALLW 569


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  332 bits (850), Expect = 2e-88
 Identities = 170/392 (43%), Positives = 239/392 (60%)
 Frame = +1

Query: 4    EVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVAL 183
            EV+    ++  +KS GPDG++ +FF++TW+++G +   A+K FF  G L K  N  I+AL
Sbjct: 723  EVMKVFFSIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFFTYGFLPKGLNSTILAL 782

Query: 184  IPKTTHEPTVSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNIH 363
            IPK T+   + D+RPISCC+V YK ISK+LA RL  +L   I   Q+AF+  R +++N+ 
Sbjct: 783  IPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFIAPNQSAFISDRLLMENLL 842

Query: 364  LMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTST 543
            L  EL++ Y++  +SPRC +KIDL KAFDSV W FL   L  LD P  FI W+  C+++ 
Sbjct: 843  LASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTA 902

Query: 544  SFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRPL 723
            SFS+ VN           GLRQG  LSPYLFVIC+  LS +L K      F +HP+CR +
Sbjct: 903  SFSVQVN-----------GLRQGCSLSPYLFVICMNVLSAMLDKGAVEKRFGYHPRCRNM 951

Query: 724  RITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRDI 903
             +THL FADD+M+ S G  +S+  +L   +DF   SGL +++ KS +FMA I       I
Sbjct: 952  GLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASI 1011

Query: 904  LSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIRS 1083
            L+      GS+P RYLG+PL  +R+ +A    L  KIR+ I  W    LSYAGR +L+ S
Sbjct: 1012 LARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNS 1071

Query: 1084 VLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            V+  +  +WIS F LP     +I ++   FLW
Sbjct: 1072 VISSLTKFWISAFRLPRACIREIEQISAAFLW 1103


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  326 bits (835), Expect = 1e-86
 Identities = 163/383 (42%), Positives = 236/383 (61%)
 Frame = +1

Query: 31   EDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVALIPKTTHEPT 210
            E  KS GPDG++ +FFK  W ++G D + A++ FF  G L K  N  I+ALI K      
Sbjct: 613  EAHKSPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALISKKHEVSG 672

Query: 211  VSDFRPISCCSVFYKVISKILATRLSSVLGPIINEAQAAFVKGRSIVDNIHLMQELLRGY 390
            + D+RPISCC+V YK++SK++A RL  +L   I   Q+AF+K R +++N+ L  EL++ Y
Sbjct: 673  MKDYRPISCCNVLYKIVSKLMANRLKEILPASIAPNQSAFIKDRLMMENLLLASELVKDY 732

Query: 391  NRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVMECVTSTSFSLSVNGG 570
            +++ IS R  +KID+ KAFD V W FL  +LK +  P +FI W+  C+ + SFS+ VNG 
Sbjct: 733  HKESISSRSALKIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGE 792

Query: 571  LFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHPKCRPLRITHLAFAD 750
            L G F+ ++GLRQG  LSPYL+VIC+  LS +L K        +HP+CR + +THL FAD
Sbjct: 793  LSGFFRSERGLRQGCSLSPYLYVICMNVLSCMLDKAAVEKKISYHPRCRNMNLTHLCFAD 852

Query: 751  DLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEPDTRDILSFSNLSQG 930
            D+M+ S G   S++  L   E F   S L++++ KS IFMAGI       IL       G
Sbjct: 853  DIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELG 912

Query: 931  SMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRAELIRSVLQGVECYW 1110
            ++P +YLG+PL  +R+  + +  L  KIR  I  W+   LS+AGR +LI+SVL  +  +W
Sbjct: 913  TLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFLSFAGRLQLIKSVLSSITNFW 972

Query: 1111 ISIFPLPDTVCTKIIKLCRNFLW 1179
            +S+F LP     +I K+   FLW
Sbjct: 973  LSVFRLPKACLQEIEKMFSAFLW 995


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score =  317 bits (813), Expect = 5e-84
 Identities = 160/397 (40%), Positives = 238/397 (59%), Gaps = 4/397 (1%)
 Frame = +1

Query: 1    EEVLSALKNVEDDKSSGPDGFSSKFFKKTWTIVGNDFLAAVKEFFASGQLLKQWNHAIVA 180
            +++ SA  +   +K+SGPDGF  +FFK+TW+++G +   AV EFF S  LLKQWN   + 
Sbjct: 399  QDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVIGTEVTDAVSEFFTSSVLLKQWNATTLV 458

Query: 181  LIPKTTHEPTVSDFRPISCCS----VFYKVISKILATRLSSVLGPIINEAQAAFVKGRSI 348
            LIPK T+   ++DFRPISC        YKVI+++L  RL  +L  +I+  Q+AF+ GR +
Sbjct: 459  LIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRFL 518

Query: 349  VDNIHLMQELLRGYNRKWISPRCIIKIDLKKAFDSVSWKFLEEMLKGLDFPPLFISWVME 528
             +N+ L  EL++GYNR+ I PR ++K+DL+KAFDS+ W F+   LK +  P  F+ W+ +
Sbjct: 519  AENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQ 578

Query: 529  CVTSTSFSLSVNGGLFGHFQGKKGLRQGDPLSPYLFVICLEYLSRLLKKRTDGSGFKFHP 708
            C+++ +FS+ VNG   G F+  +GLRQG+PLSP+LFV+ +E  S LL  R       +HP
Sbjct: 579  CISTPTFSVCVNGNTGGFFKSTRGLRQGNPLSPFLFVLAMEVFSSLLNSRFQAGYIHYHP 638

Query: 709  KCRPLRITHLAFADDLMLLSRGDPNSVRILLECIEDFGNKSGLRMNVLKSNIFMAGIKEP 888
            K  PL I+HL FADD+M+   G  +S+  + E +EDF   SGL +N  K+++++AG+   
Sbjct: 639  KTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLDRI 698

Query: 889  DTRDILSFSNLSQGSMPFRYLGIPLTAERLKVAHFEELTRKIRTYIDGWSALTLSYAGRA 1068
            +   I                     A +L++A +  L  K+      WS   LS+AGR 
Sbjct: 699  EASTI---------------------ARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAGRV 737

Query: 1069 ELIRSVLQGVECYWISIFPLPDTVCTKIIKLCRNFLW 1179
            +LI SV+ G+  +WIS F LP     +I  LC  FLW
Sbjct: 738  QLIASVISGIINFWISTFILPKGCVKRIEALCARFLW 774