BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00000062
         (7237 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot...  3657   0.0  
ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]       1229   0.0  
ref|YP_227370.1| helicase [Strawberry latent ringspot virus]          978   0.0  
ref|YP_227369.1| protease cofactor [Strawberry latent ringspot v...   941   0.0  
ref|YP_227372.1| protease [Strawberry latent ringspot virus]          500   e-138
ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]...   353   8e-94
gb|AAZ76594.1| polyprotein [Stocky prune virus]                       321   3e-84
gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]                   312   1e-81
ref|YP_081444.1| polyprotein [Cherry rasp leaf virus] gi|8200270...   307   4e-80
ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523...   303   6e-79
ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent sphe...   303   1e-78
ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf ...   296   9e-77
gb|AAY56484.1| unknown [Strawberry latent ringspot virus]             233   2e-71
gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]         273   1e-69
ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt v...   255   2e-64
ref|NP_945134.1| polyprotein [Broad bean wilt virus 1] gi|755550...   255   2e-64
gb|AAY32935.1| RNA-dependent RNA polymerase [Radish mosaic virus]     253   9e-64
gb|AAX12375.1| polyprotein 1 [Broad bean wilt virus 1]                253   1e-63
gb|ACE06773.1| polyprotein [Radish mosaic virus]                      253   1e-63
ref|NP_619518.1| polyprotein [Cowpea severe mosaic virus] gi|549...   252   2e-63

>ref|YP_227367.1| 250 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040997|gb|AAW63128.1| 250 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 2227

 Score = 3657 bits (9482), Expect = 0.0
 Identities = 1791/2229 (80%), Positives = 1949/2229 (87%), Gaps = 20/2229 (0%)
 Frame = -2

Query: 7020 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 6841
            MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD  G LGGLVSTGRCA  KE
Sbjct: 1    MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60

Query: 6840 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 6661
            RNL+VE DR  +    +  L + D+E+ FMS+L  F        ++    +      G S
Sbjct: 61   RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120

Query: 6660 YVHQAIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 6487
            Y+ + I++A GLDV +Y  +Q  +     R FL  DR  DAE LT VVRTAIV  GFG+P
Sbjct: 121  YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180

Query: 6486 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 6307
            +FDYTGLGGD  KYRFD D L++D S GL RFVSAGFTES   +      LT  D+D MT
Sbjct: 181  TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238

Query: 6306 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 6178
            QALSDEW EW+YFEED EE L E L+       ++                 + ++  + 
Sbjct: 239  QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298

Query: 6177 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 5998
              P+SP  VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299  ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358

Query: 5997 PVGSAYTETWFVDGCLPEPWFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 5818
            P G+ YTETWF+DGCLP  WF RG  +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL 
Sbjct: 359  PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418

Query: 5817 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 5638
            DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419  DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478

Query: 5637 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 5458
            NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479  NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538

Query: 5457 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 5278
            VWDLIIKAKD+AF  L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE  G+P
Sbjct: 539  VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598

Query: 5277 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXX 5098
            LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK            
Sbjct: 599  LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658

Query: 5097 XXXEKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 4921
               +KEEW+REL+ASPH +PECVIDLTHMKDLL  ++C+ FK+AFEVGA  ASSPGMLFG
Sbjct: 659  ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718

Query: 4920 SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGS 4741
            SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG 
Sbjct: 719  SGFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGE 778

Query: 4740 KSEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMD 4561
            KSEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMD
Sbjct: 779  KSEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMD 838

Query: 4560 SRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 4381
            SRKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI
Sbjct: 839  SRKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLI 898

Query: 4380 DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXX 4201
            DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR     
Sbjct: 899  DDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPA 958

Query: 4200 XXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPSAVVHCKKAFENRRLILAEVTAVEGGR 4021
                    LEAKGNTCCTSDFVFITANQAGLTPSAV+HCKKAFENRRLILAEVTAVEGGR
Sbjct: 959  PLPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGR 1018

Query: 4020 YRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAA 3841
            YRDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQ+F AA
Sbjct: 1019 YRDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAA 1078

Query: 3840 DQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDP 3661
            DQIAAEAEEGF+ AGI +PF MLK + G  +TYY EE+  E+T  L+  DADII SRLDP
Sbjct: 1079 DQIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDP 1138

Query: 3660 GIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLE 3481
             +ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFL+PKVTE QLE
Sbjct: 1139 QMITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLE 1198

Query: 3480 QHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTF 3301
              KRGF  + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+AP L+TF
Sbjct: 1199 TSKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTF 1258

Query: 3300 ATLGTMKASGSLSSSQDQXXXXXXXXXXXXRYLLEASGPGAVEAKAQDVESELASLSKHL 3121
            A LGTM+ASGSLSSSQDQ            RYLLEASGPGA+EAK QDVE+ELASLSKHL
Sbjct: 1259 AALGTMRASGSLSSSQDQETRRTASGRERRRYLLEASGPGALEAKPQDVETELASLSKHL 1318

Query: 3120 IGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYKVGSLTKTFPFTVNRKNCRFQR 2941
            +GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGCYKVGSL+KTFPFTVNRKNC+FQR
Sbjct: 1319 VGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGCYKVGSLSKTFPFTVNRKNCKFQR 1378

Query: 2940 LGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGWFMEMLFRGNGVLEVAREEAD 2761
            +GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAGSGWFMEM+F+ NGVLEVAREEAD
Sbjct: 1379 IGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAGSGWFMEMVFQRNGVLEVAREEAD 1438

Query: 2760 YTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGL 2581
            YTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYRNDFFYVSQCGTPLVANYG+GKGL
Sbjct: 1439 YTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYRNDFFYVSQCGTPLVANYGKGKGL 1498

Query: 2580 KIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASLLLGEIKHPLETDRIQASGCLSGE 2401
            KIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASLLLG+IKHPLETDRIQASGCLSG+
Sbjct: 1499 KIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASLLLGDIKHPLETDRIQASGCLSGD 1558

Query: 2400 EFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRLH 2221
            EFFDAETVFPEGLL PS APRQAT+SEI KSSIS  LE L GEKRKTEPAII NRDTRL 
Sbjct: 1559 EFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISNRDTRLK 1618

Query: 2220 DRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLN 2041
            DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIFDLPGGI+ KCHLLSEDENLN
Sbjct: 1619 DRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLSEDENLN 1678

Query: 2040 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDE 1861
            GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQRILD+D 
Sbjct: 1679 GVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQRILDLDA 1738

Query: 1860 LCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1681
            L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH
Sbjct: 1739 LSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLH 1798

Query: 1680 NVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND 1501
            N IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RIT LY D
Sbjct: 1799 NCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRITKLYGD 1858

Query: 1500 DQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS 1321
            +  +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSWEHMMAS
Sbjct: 1859 EHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSWEHMMAS 1918

Query: 1320 SSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEF 1141
            SSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+KEILPEF
Sbjct: 1919 SSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNKEILPEF 1978

Query: 1140 NPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFH 961
            NPPEKCDFLKRCFKARGDRYLAP         LHWVRETNM+NA ATQNNVEGFLRELFH
Sbjct: 1979 NPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGFLRELFH 2038

Query: 960  YGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEEPEVVVIRD 781
            YGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEEPE+VV++D
Sbjct: 2039 YGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPEIVVLKD 2098

Query: 780  GASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRN 601
             ASDVAP VHIVP Q CLKWK  EVP VVWCGPNCPNQLRNAN CF IQAPQGSRYPLR+
Sbjct: 2099 AASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGSRYPLRS 2158

Query: 600  TVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSTYMKAYFGDNDAGLL 421
            TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRESF HS YM AYFGDND GLL
Sbjct: 2159 TVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDKGLL 2218

Query: 420  ESTVAAKGW 394
            E+  AAKGW
Sbjct: 2219 EAVTAAKGW 2227


>ref|YP_227373.1| polymerase [Strawberry latent ringspot virus]
          Length = 675

 Score = 1229 bits (3179), Expect = 0.0
 Identities = 593/675 (87%), Positives = 625/675 (92%)
 Frame = -2

Query: 2418 GCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHN 2239
            GCLSG+EFFDAETVFPEGLL PS APRQAT+SEI KSSIS  LE L GEKRKTEPAII N
Sbjct: 1    GCLSGDEFFDAETVFPEGLLLPSQAPRQATSSEIHKSSISDGLEKLVGEKRKTEPAIISN 60

Query: 2238 RDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLS 2059
            RDTRL DR+LDIFKKGM+KYKAVAADMSPVT+EEEKIW++TWDSIFDLPGGI+ KCHLLS
Sbjct: 61   RDTRLKDRNLDIFKKGMMKYKAVAADMSPVTDEEEKIWNVTWDSIFDLPGGIQSKCHLLS 120

Query: 2058 EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQR 1879
            EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNR+LPMYQR
Sbjct: 121  EDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRNLPMYQR 180

Query: 1878 ILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 1699
            ILD+D L ATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA
Sbjct: 181  ILDLDALSATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVA 240

Query: 1698 ELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRI 1519
            ELMKLHN IPTKVGINPLGYDWTILGK+MHAKGTNWFNGDYSRFDGVTPRCLLIEI+ RI
Sbjct: 241  ELMKLHNCIPTKVGINPLGYDWTILGKKMHAKGTNWFNGDYSRFDGVTPRCLLIEISNRI 300

Query: 1518 TLLYNDDQGDRRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSW 1339
            T LY D+  +RRLHLMLAATTRLGVAGIGLYRVSGGIP GFALTVIVNSLVNHFLVRWSW
Sbjct: 301  TKLYGDEHRERRLHLMLAATTRLGVAGIGLYRVSGGIPPGFALTVIVNSLVNHFLVRWSW 360

Query: 1338 EHMMASSSLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSK 1159
            EHMMASSSLFF+DCVELAVVGDDNLVSVK++AA +FNLKKLS+FLA FGFTLKDGSDK+K
Sbjct: 361  EHMMASSSLFFTDCVELAVVGDDNLVSVKQVAAEDFNLKKLSAFLAGFGFTLKDGSDKNK 420

Query: 1158 EILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGF 979
            EILPEFNPPEKCDFLKRCFKARGDRYLAP         LHWVRETNM+NA ATQNNVEGF
Sbjct: 421  EILPEFNPPEKCDFLKRCFKARGDRYLAPLSWLSLSESLHWVRETNMTNAAATQNNVEGF 480

Query: 978  LRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSVASIFEKEEPE 799
            LRELFHYGDKELYCKWRRDLI LC++NRVPHPT+YSFEELERSWLSGK+VASIFEKEEPE
Sbjct: 481  LRELFHYGDKELYCKWRRDLISLCAENRVPHPTSYSFEELERSWLSGKTVASIFEKEEPE 540

Query: 798  VVVIRDGASDVAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGS 619
            +VV++D ASDVAP VHIVP Q CLKWK  EVP VVWCGPNCPNQLRNAN CF IQAPQGS
Sbjct: 541  IVVLKDAASDVAPNVHIVPAQTCLKWKPNEVPTVVWCGPNCPNQLRNANGCFLIQAPQGS 600

Query: 618  RYPLRNTVRNLLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSTYMKAYFGD 439
            RYPLR+TVRN LK+VHQR DEVYF GAL+QSLVHWVAAFYASMYRESF HS YM AYFGD
Sbjct: 601  RYPLRSTVRNSLKRVHQRSDEVYFAGALDQSLVHWVAAFYASMYRESFSHSKYMAAYFGD 660

Query: 438  NDAGLLESTVAAKGW 394
            ND GLLE+  AAKGW
Sbjct: 661  NDKGLLEAVTAAKGW 675


>ref|YP_227370.1| helicase [Strawberry latent ringspot virus]
          Length = 548

 Score =  978 bits (2527), Expect = 0.0
 Identities = 478/548 (87%), Positives = 506/548 (92%)
 Frame = -2

Query: 4917 GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTLTGSK 4738
            GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYT+TG K
Sbjct: 1    GFIWKILLLLCPLSMFGVSKTLSCAKDLITIQGGQDAAGRFFQDIVGGTQEVFYTITGEK 60

Query: 4737 SEFLDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS 4558
            SEFLDYIYATVGVDFQAWR+EV+ELTTATPTSIFLGPQERLKRLR+CKDKADRLILQMDS
Sbjct: 61   SEFLDYIYATVGVDFQAWRAEVLELTTATPTSIFLGPQERLKRLRACKDKADRLILQMDS 120

Query: 4557 RKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 4378
            RKVPGAYITHFN+LLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID
Sbjct: 121  RKVPGAYITHFNSLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLID 180

Query: 4377 DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXX 4198
            DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIR      
Sbjct: 181  DVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRLIAPAP 240

Query: 4197 XXXXXXXLEAKGNTCCTSDFVFITANQAGLTPSAVVHCKKAFENRRLILAEVTAVEGGRY 4018
                   LEAKGNTCCTSDFVFITANQAGLTPSAV+HCKKAFENRRLILAEVTAVEGGRY
Sbjct: 241  LPLNMPNLEAKGNTCCTSDFVFITANQAGLTPSAVIHCKKAFENRRLILAEVTAVEGGRY 300

Query: 4017 RDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTVNQSKQHFSEQVDLRDAPHTQVFTAAD 3838
            RDRYRFT+HQKNEPY+RDDRFQVMNY+QF+QY VNQSK HFSEQVDLRDAPHTQ+F AAD
Sbjct: 301  RDRYRFTIHQKNEPYARDDRFQVMNYDQFMQYVVNQSKDHFSEQVDLRDAPHTQIFAAAD 360

Query: 3837 QIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEERMMEVTETLTPEDADIIRSRLDPG 3658
            QIAAEAEEGF+ AGI +PF MLK + G  +TYY EE+  E+T  L+  DADII SRLDP 
Sbjct: 361  QIAAEAEEGFKTAGITIPFCMLKCIEGRMVTYYDEEKFTEMTVELSETDADIIHSRLDPQ 420

Query: 3657 IITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLRPKVTEEQLEQ 3478
            +ITQ+LQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFL+PKVTE QLE 
Sbjct: 421  MITQRLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKVIGRFLKPKVTEAQLET 480

Query: 3477 HKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLLSWLKSLYTAPCLLTFA 3298
             KRGF  + KELAQGAC+AI+DAPFLVKLLLGFGALYFVGLP+L WLKSLY+AP L+TFA
Sbjct: 481  SKRGFLQVTKELAQGACRAISDAPFLVKLLLGFGALYFVGLPILGWLKSLYSAPSLMTFA 540

Query: 3297 TLGTMKAS 3274
             LGTM+AS
Sbjct: 541  ALGTMRAS 548


>ref|YP_227369.1| protease cofactor [Strawberry latent ringspot virus]
          Length = 719

 Score =  941 bits (2432), Expect = 0.0
 Identities = 466/721 (64%), Positives = 549/721 (76%), Gaps = 20/721 (2%)
 Frame = -2

Query: 7020 MGYSRGSRGKADKAKLCGVCFAPFPDAQERKVHYKKYNCRDDMGNLGGLVSTGRCARMKE 6841
            MGYSRGSRG ADK KLCG+CFA FPDAQERK HY+KYNCRD  G LGGLVSTGRCA  KE
Sbjct: 1    MGYSRGSRGGADKPKLCGICFASFPDAQERKCHYRKYNCRDSGGQLGGLVSTGRCASAKE 60

Query: 6840 RNLQVERDRCIMREYEEGELLDADIEIEFMSELISFVSPIPFLGVSFGTVNDTQPALGPS 6661
            RNL+VE DR  +    +  L + D+E+ FMS+L  F        ++    +      G S
Sbjct: 61   RNLKVEADRKELESSCDDFLTEQDMEMTFMSDLFEFTEGFSGDPITLCFAHHITYGPGDS 120

Query: 6660 YVHQAIFKADGLDVEEYTKYQAPRAG--MRNFLKADRICDAEALTGVVRTAIVNPGFGNP 6487
            Y+ + I++A GLDV +Y  +Q  +     R FL  DR  DAE LT VVRTAIV  GFG+P
Sbjct: 121  YISRPIYQAPGLDVADYAAFQNEKVKGTQREFLTTDRKYDAEVLTSVVRTAIVGGGFGSP 180

Query: 6486 SFDYTGLGGDEFKYRFDKDGLFADDSLGLARFVSAGFTESLGPENRSVAPLTSGDMDVMT 6307
            +FDYTGLGGD  KYRFD D L++D S GL RFVSAGFTES   +      LT  D+D MT
Sbjct: 181  TFDYTGLGGDGLKYRFDSDDLWSDHSKGLGRFVSAGFTEST--KGSLDLKLTLQDVDEMT 238

Query: 6306 QALSDEWCEWIYFEEDYEEVLLEGLDVFFPFFGKL-----------------ETEKLTSA 6178
            QALSDEW EW+YFEED EE L E L+       ++                 + ++  + 
Sbjct: 239  QALSDEWAEWVYFEEDLEEYLEEYLNSKIALAQEIRALKQKRTVALAQKAYDQAKEKPAV 298

Query: 6177 TEPLSPTCVLDSADSYLPGTKWVYDSDEEDYIPVAPIDRFHNKKFDIDFVDYCDTEYQKQ 5998
              P+SP  VL SA+SYL GTKW YDS++EDY+PVAP+D+FHNKK DIDFVD CDTEYQ Q
Sbjct: 299  ERPISPDTVLQSANSYLSGTKWCYDSEDEDYLPVAPLDKFHNKKHDIDFVDCCDTEYQIQ 358

Query: 5997 PVGSAYTETWFVDGCLPEPWFMRGTPLDEAIICEKLPLVGKSPLELMIQYQVQPTGDLLF 5818
            P G+ YTETWF+DGCLP  WF RG  +DEA++CEKLPL+GK+PLELMIQYQV+PTGDLL 
Sbjct: 359  PSGTIYTETWFIDGCLPGCWFKRGVAIDEAVVCEKLPLIGKTPLELMIQYQVEPTGDLLL 418

Query: 5817 DIQRALFAYYEKEALPNKKYFDLNGVPTLLVFEDWRADLRYCLYAPLVKGNQLKHLMAIV 5638
            DIQRALFAYYEKEALPNKKYF+LNGVPT++V EDWR DLRYCLYAP ++G+QLKHLM ++
Sbjct: 419  DIQRALFAYYEKEALPNKKYFNLNGVPTMIVLEDWRCDLRYCLYAPFIQGDQLKHLMVVL 478

Query: 5637 NAPLPGWLLDFPKRRKSGVLQASGWNPLRYFFKQTTLGFLDGVVSKLRELLGPVINAAGY 5458
            NAPLPGWL+DFPKRRKSGVLQASGWNPLRYF KQ TLGFLDGV++KL+EL+GP+INAA +
Sbjct: 479  NAPLPGWLVDFPKRRKSGVLQASGWNPLRYFSKQATLGFLDGVMTKLKELIGPIINAASF 538

Query: 5457 VWDLIIKAKDYAFSMLDEMVSKRGEILKALLQPLLYVGGFLIFLGSLKGLQTIVEKLGVP 5278
            VWDLIIKAKD+AF  L++M+ KRGEILKALLQPLLYV G L+FLGSLKGL+TIVE  G+P
Sbjct: 539  VWDLIIKAKDWAFKALEDMIEKRGEILKALLQPLLYVCGLLLFLGSLKGLKTIVESFGIP 598

Query: 5277 LAVLTAAAIGIGVYILVQFLGQAHMGALKRSTKIWELVQKWDQPSEVKRXXXXXXXXXXX 5098
            LA+LT AAIG+GVY+LV FLGQAHMGALKRSTKIW+LVQ WD+PSEVK            
Sbjct: 599  LAILTGAAIGLGVYVLVTFLGQAHMGALKRSTKIWDLVQNWDKPSEVKCIDEQIIEVLVE 658

Query: 5097 XXXEKEEWLRELMASPHSIPECVIDLTHMKDLLG-ERCSTFKEAFEVGAPVASSPGMLFG 4921
               +KEEW+REL+ASPH +PECVIDLTHMKDLL  ++C+ FK+AFEVGA  ASSPGMLFG
Sbjct: 659  ESPDKEEWVRELLASPHYVPECVIDLTHMKDLLSPQKCANFKQAFEVGASEASSPGMLFG 718

Query: 4920 S 4918
            S
Sbjct: 719  S 719


>ref|YP_227372.1| protease [Strawberry latent ringspot virus]
          Length = 257

 Score =  500 bits (1287), Expect = e-138
 Identities = 238/257 (92%), Positives = 253/257 (98%)
 Frame = -2

Query: 3189 GPGAVEAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC 3010
            GPGA+EAK QDVE+ELASLSKHL+GFTSID+PDHHYRGIALGGTRVLMVYHVWLEL SGC
Sbjct: 1    GPGALEAKPQDVETELASLSKHLVGFTSIDFPDHHYRGIALGGTRVLMVYHVWLELHSGC 60

Query: 3009 YKVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAG 2830
            YKVGSL+KTFPFTVNRKNC+FQR+GLKDLVIVDFPPTFVSFPVLKLEKWLL+SHDPFMAG
Sbjct: 61   YKVGSLSKTFPFTVNRKNCKFQRIGLKDLVIVDFPPTFVSFPVLKLEKWLLASHDPFMAG 120

Query: 2829 SGWFMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYR 2650
            SGWFMEM+F+ NGVLEVAREEADYTLLDT+DVYDAAFLKGVGLNKCVRYTICDD GTGYR
Sbjct: 121  SGWFMEMVFQRNGVLEVAREEADYTLLDTHDVYDAAFLKGVGLNKCVRYTICDDAGTGYR 180

Query: 2649 NDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEASL 2470
            NDFFYVSQCGTPLVANYG+GKGLKIASIHVVHHFSAT+KDTIIAGSGSL+TKEEYLEASL
Sbjct: 181  NDFFYVSQCGTPLVANYGKGKGLKIASIHVVHHFSATEKDTIIAGSGSLLTKEEYLEASL 240

Query: 2469 LLGEIKHPLETDRIQAS 2419
            LLG+IKHPLETDRIQAS
Sbjct: 241  LLGDIKHPLETDRIQAS 257


>ref|NP_620568.1| 235K polyprotein [Apple latent spherical virus]
            gi|7007468|dbj|BAA90870.1| 235K polyprotein [Apple latent
            spherical virus]
          Length = 2079

 Score =  353 bits (905), Expect = 8e-94
 Identities = 386/1385 (27%), Positives = 593/1385 (42%), Gaps = 90/1385 (6%)
 Frame = -2

Query: 4698 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKA----DRLILQMDSRKVPGAYIT 4531
            DF  W   V      T  S+ L P +RL+ +R   D+             + K P   +T
Sbjct: 605  DFLEWAKRVERYAGDTYDSMILNPADRLRIIRELVDQQVGFQKAFFNPRIASKAPRLMLT 664

Query: 4530 HFNNLLQSLDRALVECQQALS----VGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLD 4366
             F    Q L   L +C  ALS        R  P  I LY ++   GKS+    L + +LD
Sbjct: 665  EF----QRLSTMLRDCHSALSRAALFDMQRVPPFWIHLYSENGGTGKSMAMMPLGNYLLD 720

Query: 4365 SLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXX 4186
            S++  +T R  +RN +  F + Y +Q   L D+FGA  +  + DE  ++           
Sbjct: 721  SIEEPKTHRFVTRNVASRFLNGYLHQPCFLMDEFGAAPKTDYMDEVTMLDLVSPNPLTLN 780

Query: 4185 XXXLEAKGNTCCTSDFVFITANQAGLTPSAVVHCK-KAFENRRLILAEVTAVEGGRYRDR 4009
               L  K N   TS  +  TAN+    P   +      F  RR ILAEV   +G  Y   
Sbjct: 781  MAALGDK-NIMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRHILAEVVLAQGKPYFHE 839

Query: 4008 YRFTLHQKNEPYSRDD--------------RFQVMNYEQFLQYTVNQSKQHFSEQVDLRD 3871
            +     +  +    D                F  +  EQF+ + +NQ      EQ  +  
Sbjct: 840  FILLKARTEQKIYLDQALREVASPIHLSPAEFYAVCAEQFVNF-LNQQGNALIEQQGVSY 898

Query: 3870 APHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYSEE-----RMMEVTET 3706
                      D +  +    F+   I+   T       +Q  + +E      R     E 
Sbjct: 899  VRSDDFSFLKDYLQYKMGLDFQQCEIERIVTDYSLSIKNQTIFPAEHEHIFSRWRAELEA 958

Query: 3705 LTPEDADIIRSRLDPGIITQQLQMLLPKAAYVNLKNHFGLGTDPFEQPNPYFNCSQRAKV 3526
            L+  +   + + LD  +    +  L+ +    N  N       P+E    Y  C  + K 
Sbjct: 959  LSLSE---LITMLDKHVTETFVYTLIKE----NHSNVVMSNLTPYECLI-YSFCKDKYKK 1010

Query: 3525 IGRFLRPKVTEEQLEQHKRGFATMAKELAQGACKAINDAPFLVKLLLGFGALYFVGLPLL 3346
                    + EE+++Q       +A+ L+  A   +N  P  V L+L   A   VG  L+
Sbjct: 1011 ETDATFSSLPEEEVKQ-----PWLAEFLSFTARLCLN-VPKWVTLVLALCAFCLVGYVLI 1064

Query: 3345 SWLKSLYTAPC----LLTFATLGTMKASGS-----------------LSSSQDQXXXXXX 3229
             +   L+T  C    +L F++L       S                  +S Q        
Sbjct: 1065 KFAIGLFTGACTIFSVLAFSSLSAQGPEDSPGFENARKTAGVKVHFVKTSFQPSDWKGIN 1124

Query: 3228 XXXXXXRYLLEASGPGAVEAKAQ--DVESELASLSKHLIGFTSIDYPDHHYRGIALGGTR 3055
                   +   A    A+    Q  D    + +L KH +   + ++    Y  IALG   
Sbjct: 1125 VKPSGFNWGDVADDDDAIPLWGQGPDQNQNVLNLLKHQVVLIA-EHSKVVYNAIALGNRN 1183

Query: 3054 VLMVYHVWLELQSGCYKV-GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVL 2878
             L   HVW  + +  Y + G         +N       +L  +DLV+V  P +   F  L
Sbjct: 1184 FLFTKHVWDLMPTCNYGLFGYAIAKNKIYINPNVRPAIQLKNRDLVVVQLPDSVPPFSAL 1243

Query: 2877 KLEKWLLS-SHDPFMAGSGWFM-EMLFRGNGVLEVAREEADYTLL---DTNDVYDAAFLK 2713
              + +L + +  P +A +   + E L+    V ++ ++   +  L    + D Y    L 
Sbjct: 1244 PKDIFLSNLAEAPKVANAALVVSEPLYEKRSVAQLQQKIYPFENLPQIHSRDTYSCGSLG 1303

Query: 2712 GVGLNKCVRYTICDDTGTGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQK 2533
               +  C  YT   DT  G          C +PL++  G G+ + +  +HV         
Sbjct: 1304 SKPMPACYSYTF--DTFAGL---------CTSPLISMDG-GRCV-LLGLHVA-------G 1343

Query: 2532 DTIIAGSGSLITKEEYLEASLL----LGEIKHPLETDRIQASG--CLSGEEFFDAETVFP 2371
            D    G   ++T E++ + +       G  +  + T R ++ G  CL G ++   +  F 
Sbjct: 1344 DKSKMGYAQIVTLEDFSDINFSEKVGQGPEQMYIPTARSESFGSVCLLG-KWTGPKPYFL 1402

Query: 2370 EGLLEPSGAPRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIF 2200
            E           + T  +    I  D+         TEPAI+  +D RL   +++  D F
Sbjct: 1403 E---------NSSLTPSLIHDCIDIDM--------TTEPAILSKKDPRLQYTNNKDFDPF 1445

Query: 2199 KKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDN 2023
              GM KY   A       +E+E++++   D +F ++P      C  LS D+  NG+  D+
Sbjct: 1446 LSGMGKYAVEAHSF----DEDEELFEDALDRVFSEIP---MFTCEDLSNDQVCNGIEDDD 1498

Query: 2022 EYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTL--NRDLPMYQRILDMDELCAT 1849
               G+V+ T+EG+P    R  G  GK     G PG + +  N  L     + +++ L   
Sbjct: 1499 YAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGDWHIVPNSLLANELNVKELN-LSKN 1557

Query: 1848 TIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIP 1669
                ++G+D  KDE++  SK+Y   KTRLFTILP++YN LVRKYF SFV++LM LHN +P
Sbjct: 1558 IFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVDYNILVRKYFLSFVSQLMALHNEVP 1617

Query: 1668 TKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDD--- 1498
            TKVGI+P+  +W+IL   +H+KGTNWFNGDYSRFDG+TPR +L  I +RI+  Y +    
Sbjct: 1618 TKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDGITPRNVLQGIVKRISRRYANKSSF 1677

Query: 1497 ---------QGD-RRLHLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVR 1348
                      GD  R  LM   +TR G+    L+ V+ GIPSGF LTVIVNSLVN F V 
Sbjct: 1678 AITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNSFFVH 1737

Query: 1347 WSWEHMMAS---SSLF----FSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGF 1189
            +++  + +S    +L+    F   V  AV GDDNL+SV +     FNL  +S+ L + G 
Sbjct: 1738 FAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLISVHDTIKDTFNLVTISNLLLEHGV 1797

Query: 1188 TLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNA 1009
            TLK+G+DK++EIL  F P EK DFLKR F       +AP         LHWVR+  + +A
Sbjct: 1798 TLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHIVAPLNTVNITERLHWVRK-GLGDA 1856

Query: 1008 VATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSV 829
             AT  N +  L E   +G  ELY    R  I+   K +        +++    +L+G S 
Sbjct: 1857 DATLENCKSALFEALFHG--ELYYNDLRGKIEKACKVKGLPLIVPDYQDALSLFLTGGSY 1914

Query: 828  ASIFE 814
            A   +
Sbjct: 1915 AKAIQ 1919


>gb|AAZ76594.1| polyprotein [Stocky prune virus]
          Length = 795

 Score =  321 bits (823), Expect = 3e-84
 Identities = 220/609 (36%), Positives = 318/609 (52%), Gaps = 31/609 (5%)
 Frame = -2

Query: 2649 NDFFYVSQCGTPLVANYG---RGKGLKIASIHVVHHFSATQKDTIIA-GSGSLITKEEYL 2482
            + +     CG    A  G    G G+    + ++H  +  ++   +  G G+ +T+E+ +
Sbjct: 22   HSYMISGDCGVISFAPGGSTLEGSGVVPPKVCIMHDSNKMRQSVDLQLGHGAFLTQEDLI 81

Query: 2481 EASLLLGEIKHPLETDRIQASGCLSGEE----FFDAETVFPEGLLEP-SGAPRQATTSEI 2317
               +LL         D +    CL   E        + V   G L+  S AP  +  +++
Sbjct: 82   GYEVLL---------DCVATGSCLPEVEPIINGLSCDNVVCMGRLKKVSDAPHYSKKTQL 132

Query: 2316 KKSSISADLEALTGEKRKTEPAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMSPVT 2146
            ++S IS D+  L  E   T PAII N D R+    +   D+F  GM KYK +A     V 
Sbjct: 133  ERSLIS-DIVDLPCE---TVPAIISNEDPRIAVSCNPDFDVFVNGMEKYKKMAGPFEGVE 188

Query: 2145 -EEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1969
              +E++ +    D IFD           +SE+  L G+     +  +V STSEG+P +L 
Sbjct: 189  GSDEQQDFHDALDDIFDCLNIESESLEEVSEEVALRGLPDVEYFDPIVASTSEGYPWILE 248

Query: 1968 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLS 1792
            R +G  GK   L G+PGC++++      +   +++  L    +P ++G++  KDER+   
Sbjct: 249  RPSGCKGKAWLLEGVPGCFSVDPSSKFGKAKRELELNLQQGVVPPLIGVECPKDERVARK 308

Query: 1791 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 1612
            K+    KTRLFT+LP EYN LVR+YF  FV++ M+ HN  P KVGINP   +WT L + +
Sbjct: 309  KVTTKPKTRLFTVLPFEYNLLVREYFMDFVSKYMQRHNECPGKVGINPQSIEWTNLYENL 368

Query: 1611 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR------RLHLMLAATTRL 1450
             +KGTNWFNGD+ RFDG+TPR +++++  RI  LY     DR      R  LML A+ R 
Sbjct: 369  RSKGTNWFNGDFERFDGITPRDVMVQLVIRINKLYKRGDADRPLANKVRSLLMLMASDRY 428

Query: 1449 GVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASS-------SLFFSDCVE 1291
             +AG  LY+VS GIPSGF+LTVIVNSLVN F +R++W+ ++ +S              V 
Sbjct: 429  AIAGRNLYKVSCGIPSGFSLTVIVNSLVNEFFLRFAWKRIVRASLGEAFVHRSIMDREVH 488

Query: 1290 LAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNP-PEKCDFL 1114
             AV GDDNLVSV +  +S +NL  +SSFL + G  LK+G  K +E  P F+P P  CDFL
Sbjct: 489  FAVYGDDNLVSVSDKYSSLYNLVSISSFLRERGVVLKNGQCKDEEDFPPFSPSPSTCDFL 548

Query: 1113 KRCF-KARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE--LFHYGDKEL 943
            KR F      R LAP          HWVR++        Q NV+G LRE   F     E 
Sbjct: 549  KRRFVLGSSGRVLAPLDKSSLLGCAHWVRKSQDPGEAIVQ-NVQGILRECVAFEENSYEF 607

Query: 942  YCKWRRDLI 916
            +   RR L+
Sbjct: 608  FHDMRRKLL 616


>gb|AAW92113.2| polyprotein [Cherry rasp leaf virus]
          Length = 2235

 Score =  312 bits (800), Expect = 1e-81
 Identities = 250/772 (32%), Positives = 371/772 (48%), Gaps = 34/772 (4%)
 Frame = -2

Query: 3174 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCY--KV 3001
            E   ++    L +L KH +   + +     Y  IALGG   L+  HVW +L   C     
Sbjct: 1303 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1360

Query: 3000 GSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGSGW 2821
            G         +  +     +L  +DLVIV  P +   F  L  + +L +        +  
Sbjct: 1361 GYAVAKDKIFIGPRIRPCAQLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTANAC 1420

Query: 2820 FM--EMLFRGNGVLEVAREEADYTLL---DTNDVYDAAFLKGVGLNKCVRYTICDDTGTG 2656
             +  + LF    V ++ +    +  L    + D Y    L    +  C  Y    +T   
Sbjct: 1421 LVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET--- 1475

Query: 2655 YRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYLEA 2476
                  Y   C +PL+A  G G+ + I  +HVV        D    G   ++T +++ + 
Sbjct: 1476 ------YAGLCTSPLIAQEG-GRCI-ILGLHVV-------GDRSKMGYAQIVTLDDFSDV 1520

Query: 2475 SLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISA 2296
            +L          +D++   G    E +   +     G +   GA        ++K+++  
Sbjct: 1521 AL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTTLIP 1567

Query: 2295 DLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEEKI 2128
             L + + + +R TEPAI+  RD RL D      D+F +GM KY   A  +    +E+ ++
Sbjct: 1568 SLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDLEV 1623

Query: 2127 WDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEA 1951
            ++   D +F ++P   E  C  L+ D+  NG+  D    G+V+ T+EG+P    R  G +
Sbjct: 1624 FEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAGAS 1680

Query: 1950 GKERFLLGLPGCYTLNRDLPMYQRILDMD-ELCATTIPCIVGLDTAKDERLPLSKIYQDV 1774
            GK     G PG + +     +   +   +  L       ++G+D  KDE++  SK+Y   
Sbjct: 1681 GKSWLFAGAPGDWHIVPGSLLANEMHKKEVALSRGLFEPLIGIDFPKDEKVDSSKVYIKP 1740

Query: 1773 KTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTN 1594
            KTRLFTILP++YN LVRKYF SFV+ +M  HN IP KVGI+ L  +W+IL  ++ +KGTN
Sbjct: 1741 KTRLFTILPVDYNILVRKYFLSFVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKGTN 1800

Query: 1593 WFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAATTR 1453
            WFNGDYSRFDG+TPR +L  I +RI   YN+       D  L          LM  A+TR
Sbjct: 1801 WFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLMDMASTR 1860

Query: 1452 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSDCV 1294
             G+    L+ V+ GIPSGF LTVIVNSLVN+F + +S+  +M    L        F   V
Sbjct: 1861 YGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQMV 1920

Query: 1293 ELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFL 1114
              A  GDDNLVSV ++    FNL K++  LA+ G TLK+G+DK++EIL  F P EK DFL
Sbjct: 1921 AYATYGDDNLVSVNDVITERFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVDFL 1980

Query: 1113 KRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 961
            KR F       +AP         LHW+R+  +  A AT  N      E LFH
Sbjct: 1981 KRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2031



 Score = 72.8 bits (177), Expect = 2e-09
 Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
 Frame = -2

Query: 4698 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 4531
            DF  W  +V      T  S+ + P ERLK LR   D+ +       +     K P   +T
Sbjct: 766  DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 825

Query: 4530 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 4354
             FN L   L  A     +A    + R  P  + LY ++   GKS+    L + +LD++  
Sbjct: 826  EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNYMLDAIGE 885

Query: 4353 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXL 4174
             +T R  +RN +  F + Y+++   L D+FGA  +  + DE  ++              +
Sbjct: 886  PKTCRFVTRNVASKFLNGYQHRPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 945

Query: 4173 EAKGNTCCTSDFVFITANQAGLTPSAVVHCK-KAFENRRLILAEVTAVEG 4027
              K NT  TS  +  TAN+    P   +      F  RR ILAEV  V G
Sbjct: 946  GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 994


>ref|YP_081444.1| polyprotein [Cherry rasp leaf virus]
            gi|82002707|sp|Q6EWG9.1|POL1_CRLVP RecName: Full=RNA1
            polyprotein; AltName: Full=Genome polyprotein B; AltName:
            Full=P1; Contains: RecName: Full=Protease cofactor;
            Contains: RecName: Full=Putative helicase; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; Contains: RecName: Full=RNA-directed RNA
            polymerase gi|50399319|emb|CAF21713.1| polyprotein
            [Cherry rasp leaf virus]
          Length = 2250

 Score =  307 bits (787), Expect = 4e-80
 Identities = 249/774 (32%), Positives = 372/774 (48%), Gaps = 36/774 (4%)
 Frame = -2

Query: 3174 EAKAQDVESELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGC----Y 3007
            E   ++    L +L KH +   + +     Y  IALGG   L+  HVW +L   C    Y
Sbjct: 1318 EGPEEEPSQSLLNLLKHQVVLIA-EPTKVVYNCIALGGRNFLITKHVW-DLMPACNYGLY 1375

Query: 3006 KVGSLTKTFPFTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDPFMAGS 2827
                       +   + C   +L  +DLVIV  P +   F  L  + +L +        +
Sbjct: 1376 GYAVAKDRIFISPRIRPCA--QLKGRDLVIVQLPDSVPPFTSLPRDIFLENMAKAPKTAN 1433

Query: 2826 GWFM--EMLFRGNGVLEVAREEADYTLLD---TNDVYDAAFLKGVGLNKCVRYTICDDTG 2662
               +  + LF    V ++ +    +  L    + D Y    L    +  C  Y    +T 
Sbjct: 1434 ACLVVAKPLFERRSVAKLEQTIYPFKQLPQVHSKDTYSCGSLGSKQMPACYSYVF--ET- 1490

Query: 2661 TGYRNDFFYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKEEYL 2482
                    Y   C +PL+A  G G+ + I  +HVV        D    G   ++T +++ 
Sbjct: 1491 --------YAGLCTSPLIAQEG-GRCI-ILGLHVVG-------DRSKMGYAQIVTLDDFS 1533

Query: 2481 EASLLLGEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSI 2302
            + +L          +D++   G    E +   +     G +   GA        ++K+S+
Sbjct: 1534 DVAL----------SDKV---GQGPEEMYIPTKNSECFGSVTKLGAWTGPKPYFLEKTSL 1580

Query: 2301 SADLEALTGE-KRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVTEEEE 2134
               L + + + +R TEPAI+  RD RL D      D+F +GM KY   A  +    +E+ 
Sbjct: 1581 IPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL----DEDL 1636

Query: 2133 KIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNG 1957
            ++++   D +F ++P   E  C  L+ D+  NG+  D    G+V+ T+EG+P    R  G
Sbjct: 1637 EVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQRPAG 1693

Query: 1956 EAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLSKIYQ 1780
             +GK     G PG + +     +   +   +   +  +   ++G+D  KDE++  SK+Y 
Sbjct: 1694 ASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSSKVYI 1753

Query: 1779 DVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKG 1600
              KTRLFTILP++YN LVRKYF S V+ +M  HN IP KVGI+ L  +W+IL  ++ +KG
Sbjct: 1754 KPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQLRSKG 1813

Query: 1599 TNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LMLAAT 1459
            TNWFNGDYSRFDG+TPR +L  I +RI   YN+       D  L          L   A+
Sbjct: 1814 TNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLTDMAS 1873

Query: 1458 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL-------FFSD 1300
            TR G+    L+ V+ GIPSGF LTVIVNSLVN+F + +S+  +M    L        F  
Sbjct: 1874 TRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLHSFRQ 1933

Query: 1299 CVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCD 1120
             V  A  GDDNLVSV ++   +FNL K++  LA+ G TLK+G+DK++EIL  F P EK D
Sbjct: 1934 MVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPLEKVD 1993

Query: 1119 FLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 961
            FLKR F       +AP         LHW+R+  +  A AT  N      E LFH
Sbjct: 1994 FLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 2046



 Score = 75.1 bits (183), Expect = 4e-10
 Identities = 66/230 (28%), Positives = 98/230 (42%), Gaps = 6/230 (2%)
 Frame = -2

Query: 4698 DFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQMDS----RKVPGAYIT 4531
            DF  W  +V      T  S+ + P ERLK LR   D+ +       +     K P   +T
Sbjct: 781  DFLDWAKKVERYAGETYDSLIISPAERLKILRILADQQESFQKAFYNPRIASKAPRLMLT 840

Query: 4530 HFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSH-VGKSVCSQYLIDDVLDSLDY 4354
             FN L   L  A     +A    + R  P  + LY ++   GKS+    L + +LD++  
Sbjct: 841  EFNRLSTLLRDAHNALSRASLFDRQRTPPFWVHLYSENGGTGKSMAMMPLGNHMLDAIGE 900

Query: 4353 AQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXL 4174
             +T R  +RN +  F + Y++Q   L D+FGA  +  + DE  ++              +
Sbjct: 901  PKTCRFVTRNVASKFLNGYQHQPCFLMDEFGAAPKQDYSDEVTMLDLVSPNALTLNMAAI 960

Query: 4173 EAKGNTCCTSDFVFITANQAGLTPSAVVHCK-KAFENRRLILAEVTAVEG 4027
              K NT  TS  +  TAN+    P   +      F  RR ILAEV  V G
Sbjct: 961  GEK-NTMFTSKLIISTANRRLAHPDVKLGANLDGFLRRRNILAEVVLVSG 1009


>ref|YP_007697622.1| polyprotein [Arracacha virus B] gi|385724523|gb|AFI74271.1|
            polyprotein [Arracacha virus B]
          Length = 2314

 Score =  303 bits (777), Expect = 6e-79
 Identities = 257/793 (32%), Positives = 378/793 (47%), Gaps = 39/793 (4%)
 Frame = -2

Query: 3150 SELASLSKHLIGFTSIDYPDHHYRGIALGGTRVLMVYHVWLELQSGCYK--VGSLTKTFP 2977
            SEL S  KH+    +I   +  Y  + + G + L V HV+  +  G Y+  VG       
Sbjct: 1231 SELVSFLKHVAVMRNI-VTEQDYHLLFIAGRKALFVQHVFKSMPVGTYQLIVGDCVID-K 1288

Query: 2976 FTVNRKNCRFQRLGLKDLVIVDFPPTFVSFPVLKLEKWLLSSHDP--------FMAGSGW 2821
            F  NR   + + L  KDL IV    T    P   L K LL   +         F   S  
Sbjct: 1289 FFFNRDALQCKSLTDKDLCIVTMSHTVP--PFAPLAKRLLFDEEEKLPRQALGFFCHSEP 1346

Query: 2820 FMEMLFRGNGVLEVAREEADYTLLDTNDVYDAAFLKGVGLNKCVRYTICDDTGTGYRNDF 2641
            ++E L R +G+     ++ + T+ +  D+        + L K  +Y +    G       
Sbjct: 1347 YVE-LDRISGISH-RMQKLEQTVYENPDILYETSTGLLPLKKAYKYEMVTSPGF------ 1398

Query: 2640 FYVSQCGTPLVANYGRGKGLKIASIHVVHHFSATQKDTIIAGSGSLITKE-EYLEASLLL 2464
                 CG  L+       G+KI  +H     +   K +I   + ++  ++ E    S  +
Sbjct: 1399 -----CGDVLLQVCS--SGVKILGMH-----TTAGKQSIWRYANTVTLQDIEGAYPSEWV 1446

Query: 2463 GEIKHPLETDRIQASGCLSGEEFFDAETVFPEGLLEPSGAPRQATTSEIKKSSISADLEA 2284
            GE +  L         C +GE    A     EGL      P   T + +  S IS+DL+ 
Sbjct: 1447 GE-EPDLPISNTSRDFC-AGEV---ARVGTNEGL-----KPHFPTKTSLVPSIISSDLKE 1496

Query: 2283 LTGEKRKT--EPAIIHNRDTRLHD---RHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDL 2119
                   +   PAI+H+RD R+ +      D FK GMLKY   A       E+ +   D 
Sbjct: 1497 DDDNHIPSVMTPAILHSRDPRIVEFGHEGFDPFKDGMLKYTRAAGPFDEADEDFQDALDD 1556

Query: 2118 TWDSIFDLPGGIERK-------CHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKN 1960
             +  I DL    E +       C +L+E++ LNG    +    +V  T+EG+P    R  
Sbjct: 1557 VFLDIGDLRTEKEIEQNQSKAICRILNENDTLNGGIEQDFEDPIVSKTAEGYPFCCQRPP 1616

Query: 1959 GEAGKERFLLGLPGCYTLNRDLPMYQRILDM-DELCATTIPCIVGLDTAKDERLPLSKIY 1783
            G++GK   L G+PG ++L ++ P+   I  + D L       ++G+D  KDE++  +K+ 
Sbjct: 1617 GKSGKGWLLGGIPGDWSLKKEGPLNDAIEHLEDNLANEVFEPLIGIDFPKDEKVMRAKVE 1676

Query: 1782 QDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAK 1603
               K RLFTILP  YN +VR+++  FVA LM+ HN  P KVG+N    +W  L  ++ A 
Sbjct: 1677 VKPKVRLFTILPFHYNLVVRRFYLDFVARLMQKHNETPVKVGLNTSSLEWQHLYDQLSAV 1736

Query: 1602 GTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGD-----RRLHLMLA-------AT 1459
            G NWFNGDYSRFDG+TPRC+L  +A RI+  Y  D+       +++   +A       A 
Sbjct: 1737 GFNWFNGDYSRFDGITPRCVLQGLAIRISKFYRQDEAQGLVSKKKIRTSVAHSLLLDMAN 1796

Query: 1458 TRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMA---SSSLFFSDCVEL 1288
            +R G+AG+G+Y+VS GIPSGF LTVIVNSLVN F + +++  +M+    S  +F+  V  
Sbjct: 1797 SRYGIAGLGVYKVSSGIPSGFPLTVIVNSLVNSFFLHFAYRKLMSQSLKSHFWFTKNVAF 1856

Query: 1287 AVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKR 1108
            AV GDDNLVSV E   + +NLK ++ FL  FG TLK+G++K +EIL  F P E  DFLKR
Sbjct: 1857 AVYGDDNLVSVSESIKNVYNLKTIAHFLTQFGVTLKNGANKDEEILSSFYPIEGVDFLKR 1916

Query: 1107 CFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWR 928
             F       L           LHWVR+       A  +N    L E   +G  E Y   R
Sbjct: 1917 TFVPFRGVMLDRLNKENTLERLHWVRK-GTDEIDAILDNCGSCLLECIAHG-PEFYEDIR 1974

Query: 927  RDLIDLCSKNRVP 889
              L+ +  K ++P
Sbjct: 1975 SKLVRVLGKRKLP 1987



 Score = 63.9 bits (154), Expect = 1e-06
 Identities = 63/240 (26%), Positives = 94/240 (39%), Gaps = 4/240 (1%)
 Frame = -2

Query: 4707 VGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKD--KADRLILQMDSRKVPGAYI 4534
            V  DFQ W   V +    T  +  + P +RL+ LR   D  K    IL M     P    
Sbjct: 669  VDKDFQTWSEGVRDYAFETWKAAEIPPIQRLEILRGLDDTRKDFEKILMMPGVNPPEYLR 728

Query: 4533 THFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGD-SHVGKSVCSQYLIDDVLDSLD 4357
              F+    +L   + E  +A      R  P  I+LY      GKS C+  L + +LDS +
Sbjct: 729  RCFDACSTALRERIAELSRAAMFDISRIPPFWIYLYSARGGTGKSTCAIPLANKILDSAN 788

Query: 4356 YAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXX 4177
              +  R+ +RN + S+ + Y +Q  ++ D+FGA  E     +  II              
Sbjct: 789  EPKGARICTRNAASSYLNGYAHQPCLIMDEFGAQGEHHATPDERIILDYVSATPMIPNMA 848

Query: 4176 LEAKGNTCCTSDFVFITANQAGLTPSA-VVHCKKAFENRRLILAEVTAVEGGRYRDRYRF 4000
                      S  +  T+N     P   + + K  F  RR I AEV A   G    ++ F
Sbjct: 849  AVNDKTIMFNSKLIISTSNFPNGNPKVDLGNNKTGFLRRRKIFAEVAAPLPGEQFPQFSF 908


>ref|NP_734022.1| RNA-dependent RNA polymerase [Apple latent spherical virus]
          Length = 709

 Score =  303 bits (775), Expect = 1e-78
 Identities = 200/509 (39%), Positives = 283/509 (55%), Gaps = 26/509 (5%)
 Frame = -2

Query: 2262 TEPAIIHNRDTRL---HDRHLDIFKKGMLKYKAVAADMSPVTEEEEKIWDLTWDSIF-DL 2095
            TEPAI+  +D RL   +++  D F  GM KY   A       +E+E++++   D +F ++
Sbjct: 52   TEPAILSKKDPRLQYTNNKDFDPFLSGMGKYAVEAHSF----DEDEELFEDALDRVFSEI 107

Query: 2094 PGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGC 1915
            P      C  LS D+  NG+  D+   G+V+ T+EG+P    R  G  GK     G PG 
Sbjct: 108  P---MFTCEDLSNDQVCNGIEDDDYAEGLVMQTAEGYPFCTMRPPGVTGKTWLFAGSPGD 164

Query: 1914 YTL--NRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1741
            + +  N  L     + +++ L       ++G+D  KDE++  SK+Y   KTRLFTILP++
Sbjct: 165  WHIVPNSLLANELNVKELN-LSKNIFEPVIGIDFPKDEKVDSSKVYIKQKTRLFTILPVD 223

Query: 1740 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1561
            YN LVRKYF SFV++LM LHN +PTKVGI+P+  +W+IL   +H+KGTNWFNGDYSRFDG
Sbjct: 224  YNILVRKYFLSFVSQLMALHNEVPTKVGIDPISNEWSILCHSLHSKGTNWFNGDYSRFDG 283

Query: 1560 VTPRCLLIEIARRITLLYNDD------------QGD-RRLHLMLAATTRLGVAGIGLYRV 1420
            +TPR +L  I +RI+  Y +              GD  R  LM   +TR G+    L+ V
Sbjct: 284  ITPRNVLQGIVKRISRRYANKSSFAITDPTLSINGDLARSLLMDMCSTRYGLTNGDLWYV 343

Query: 1419 SGGIPSGFALTVIVNSLVNHFLVRWSWEHMMAS---SSLF----FSDCVELAVVGDDNLV 1261
            + GIPSGF LTVIVNSLVN F V +++  + +S    +L+    F   V  AV GDDNL+
Sbjct: 344  TSGIPSGFPLTVIVNSLVNSFFVHFAYMKLHSSEVHKALYPLYSFRTLVSYAVYGDDNLI 403

Query: 1260 SVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRY 1081
            SV +     FNL  +S+ L + G TLK+G+DK++EIL  F P EK DFLKR F       
Sbjct: 404  SVHDTIKDTFNLVTISNLLLEHGVTLKNGADKNEEILSPFYPIEKVDFLKRRFTTLQGHI 463

Query: 1080 LAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDLIDLCSK 901
            +AP         LHWVR+  + +A AT  N +  L E   +G  ELY    R  I+   K
Sbjct: 464  VAPLNTVNITERLHWVRK-GLGDADATLENCKSALFEALFHG--ELYYNDLRGKIEKACK 520

Query: 900  NRVPHPTTYSFEELERSWLSGKSVASIFE 814
             +        +++    +L+G S A   +
Sbjct: 521  VKGLPLIVPDYQDALSLFLTGGSYAKAIQ 549


>ref|YP_081454.1| RNA-dependent RNA polymerase [Cherry rasp leaf virus]
          Length = 707

 Score =  296 bits (758), Expect = 9e-77
 Identities = 189/478 (39%), Positives = 263/478 (55%), Gaps = 26/478 (5%)
 Frame = -2

Query: 2316 KKSSISADLEALTGEKRKTEPAIIHNRDTRLHDR---HLDIFKKGMLKYKAVAADMSPVT 2146
            K S I + +      +R TEPAI+  RD RL D      D+F +GM KY   A  +    
Sbjct: 34   KTSLIPSLISTSIDVERTTEPAILSQRDKRLKDSINPEFDVFLEGMKKYAVEAHSL---- 89

Query: 2145 EEEEKIWDLTWDSIF-DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLN 1969
            +E+ ++++   D +F ++P   E  C  L+ D+  NG+  D    G+V+ T+EG+P    
Sbjct: 90   DEDLEVFEDALDRVFLEIP---EHACEDLTNDQVCNGIEDDPYAEGIVMQTAEGFPFCTQ 146

Query: 1968 RKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTI-PCIVGLDTAKDERLPLS 1792
            R  G +GK     G PG + +     +   +   +   +  +   ++G+D  KDE++  S
Sbjct: 147  RPAGASGKSWLFAGAPGDWHIVPGSLLANEMHKKEVAPSRGLFEPLIGIDFPKDEKVDSS 206

Query: 1791 KIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRM 1612
            K+Y   KTRLFTILP++YN LVRKYF S V+ +M  HN IP KVGI+ L  +W+IL  ++
Sbjct: 207  KVYIKPKTRLFTILPVDYNILVRKYFLSSVSHIMTQHNTIPVKVGIDCLSNEWSILYHQL 266

Query: 1611 HAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQG----DRRLH---------LM 1471
             +KGTNWFNGDYSRFDG+TPR +L  I +RI   YN+       D  L          L 
Sbjct: 267  RSKGTNWFNGDYSRFDGITPRNVLQGIVKRINKFYNNKNSLAITDSNLSINSDLARSLLT 326

Query: 1470 LAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSL------- 1312
              A+TR G+    L+ V+ GIPSGF LTVIVNSLVN+F + +S+  +M    L       
Sbjct: 327  DMASTRYGLTNGDLWYVTSGIPSGFPLTVIVNSLVNNFFIHFSYIKLMKREELNSLYPLH 386

Query: 1311 FFSDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPP 1132
             F   V  A  GDDNLVSV ++   +FNL K++  LA+ G TLK+G+DK++EIL  F P 
Sbjct: 387  SFRQMVAYATYGDDNLVSVNDVITEKFNLVKIADLLAEHGVTLKNGADKNEEILSPFYPL 446

Query: 1131 EKCDFLKRCFKARGDRYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRE-LFH 961
            EK DFLKR F       +AP         LHW+R+  +  A AT  N      E LFH
Sbjct: 447  EKVDFLKRKFVHYQGHVVAPLNPVNITERLHWIRK-GLGEADATLENCSSAAFEALFH 503


>gb|AAY56484.1| unknown [Strawberry latent ringspot virus]
          Length = 173

 Score =  233 bits (594), Expect(2) = 2e-71
 Identities = 107/125 (85%), Positives = 111/125 (88%)
 Frame = -2

Query: 768 VAPGVHIVPVQQCLKWKTGEVPNVVWCGPNCPNQLRNANTCFQIQAPQGSRYPLRNTVRN 589
           VAP VHIVPVQ CLKWK  EVP VVWCGPNCPNQL+N N CF IQAPQGSRYPLRNTV+N
Sbjct: 3   VAPNVHIVPVQTCLKWKPSEVPTVVWCGPNCPNQLKNTNGCFFIQAPQGSRYPLRNTVKN 62

Query: 588 LLKKVHQRGDEVYFTGALNQSLVHWVAAFYASMYRESFHHSTYMKAYFGDNDAGLLESTV 409
           LLK+VHQR DEVYFTGALNQSLVHWVAAFYASMYRESF HS YM AYFGDNDAGLLE+  
Sbjct: 63  LLKRVHQRSDEVYFTGALNQSLVHWVAAFYASMYRESFSHSKYMAAYFGDNDAGLLEAVT 122

Query: 408 AAKGW 394
           AAKGW
Sbjct: 123 AAKGW 127



 Score = 67.4 bits (163), Expect(2) = 2e-71
 Identities = 30/39 (76%), Positives = 31/39 (79%)
 Frame = -3

Query: 386 FFS*AFLLENIPGPDGH*LGKPVNFVYHYHGFTWFIYFS 270
           FFS  FL ENIPGPDGH LGKPVNFV HYHG TWF  F+
Sbjct: 132 FFSYVFLKENIPGPDGHLLGKPVNFVCHYHGTTWFRVFN 170


>gb|AGR55590.1| polyprotein [Lettuce necrotic leaf curl virus]
          Length = 2223

 Score =  273 bits (697), Expect = 1e-69
 Identities = 199/572 (34%), Positives = 298/572 (52%), Gaps = 27/572 (4%)
 Frame = -2

Query: 2319 IKKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEE 2140
            ++KS I   +  + G    TEP+I+ + D R      D + KG+ K+   A      T E
Sbjct: 1165 LRKSEIFDAMTKVLGP-HSTEPSILTHHDDRPEVEGFDPYVKGVEKFNETACCFDHETVE 1223

Query: 2139 ---EEKIWDLTWDSI-FDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVL 1972
               +    DL  + +  D+PGG   K  + SE E LNG+ G+  Y  M +ST+ G+P  L
Sbjct: 1224 VALQHMSEDLLVELVKVDVPGG---KPTVRSELEILNGIPGEQFYDSMDMSTACGYPYTL 1280

Query: 1971 NRKNGEAGKER--FLLGLPGCYTLNRDLPMYQRILDMDE-LCATTIPCIVGLDTAKDERL 1801
            +    E GK +  +L G PG Y L+R+ P++   +++DE +    I  IV  + AKDERL
Sbjct: 1281 S----EFGKSKRGYLDGTPGEYVLHRERPVFADFIELDESIRQGRITEIVSCECAKDERL 1336

Query: 1800 PLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILG 1621
            PL KIYQ  KTRLFTILP  YN LVRKYF  F A LM+ HN +P KVGINP G +WT+L 
Sbjct: 1337 PLEKIYQRPKTRLFTILPFHYNMLVRKYFLDFSASLMRAHNTLPCKVGINPSGLEWTVLA 1396

Query: 1620 KRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDR----RLHLMLAATTR 1453
            K         F+ DYS FDG  P  +       +   Y D  G      R  L++ A+  
Sbjct: 1397 KNFSETADVGFSADYSSFDGRAPVFIFQRFCDIVDKYYGDLPGSENSLARHALLMMASNH 1456

Query: 1452 LGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHM----------MASSSLFFS 1303
            L + G  L+RV GG+PSGF+LTV+ NSL+N F +R+++E +          M  +   FS
Sbjct: 1457 LTLCGDKLFRVVGGMPSGFSLTVLFNSLLNEFYMRYAFERLLHHPRNITRTMGMTQRTFS 1516

Query: 1302 DCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILP-EFNPPEK 1126
            + + +A+ GDDNLV+V  +    ++L  ++  L      +K+G DK++++   +F P  +
Sbjct: 1517 E-LFIAIYGDDNLVAV-PLHLRWYSLPAIAEELQKVNVVIKNGLDKNQDVAQVQFQPLGE 1574

Query: 1125 CDFLKRCFKARG-DRYLAPXXXXXXXXXLHWVRETNMSNAV-ATQNNVEGFLRELFHYGD 952
              FL R F+      Y AP         L W+R T  +  + A   N+EG LRE + +G 
Sbjct: 1575 LTFLSRGFRKHVLGYYQAPLKWVSIVEPLRWIRPTPENPPIDALMQNIEGSLREAYMHG- 1633

Query: 951  KELYCKWRRDLIDLCSKNRVPHPTTYSFEELERSWLSGKSV---ASIFEKEEPEVVVIRD 781
            K ++  +R  ++ + ++ R+P  T   FEELER W+S  +     ++ E  E E++ +  
Sbjct: 1634 KLVFQDFRDKVVQVLNERRIPFKTLPFFEELEREWVSEVTAGTRGALVEPSEHELLSL-- 1691

Query: 780  GASDVAPGVHIVPVQQCLKWKTGEVPNVVWCG 685
                  P V  + V+Q  +     VP V +CG
Sbjct: 1692 ------PTVEQLTVEQYSREINEFVPGVHFCG 1717



 Score = 93.2 bits (230), Expect = 2e-15
 Identities = 92/359 (25%), Positives = 146/359 (40%), Gaps = 16/359 (4%)
 Frame = -2

Query: 4596 KDKADRLILQMDSRKVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDS 4417
            KDKA     +     V       FN  +  LD+ L + Q    VG++R  P C+ LYG  
Sbjct: 344  KDKAKYFEAEFVKFPVSPFVTGRFNVAVSKLDKLLTDAQSHKGVGQFRDEPFCLQLYGKP 403

Query: 4416 HVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHF 4237
              GK++   ++I+D+L+ L    T R++S +  D +WS Y +Q AVL DDFG + +  + 
Sbjct: 404  GCGKTMSIGFIIEDLLNRLGEPTTNRLYSLSSKDGYWSNYNHQVAVLIDDFGQILDAANQ 463

Query: 4236 DEA--EIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPSAVVHCKKAFENR 4063
            ++   + I              +E KG T  TS ++F+T+NQA    +  V    A + R
Sbjct: 464  NDGVKDFIFMKSSAPMSLSMAAVEEKG-TQFTSRYIFLTSNQATPPRTVGVMDLGAIQRR 522

Query: 4062 RLILAEV-----------TAVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQFLQYTV 3916
            R +L EV           T V+         FT+    +P+ R D      Y + L    
Sbjct: 523  RNLLIEVERHGPIDETCETPVQ------NITFTVRDPLDPHRRIDGLSDKTYLEILDIIE 576

Query: 3915 NQSKQHFSEQVDLRDAPHTQVFTAADQIAAEAEEGFRVAGIKVPFTMLKSLSGDQLTYYS 3736
               + H+++   L+                         GI+         S D+LT   
Sbjct: 577  EACRNHWAKDAWLKTFG---------------------KGIERKLQAQVDTSDDELTDSD 615

Query: 3735 EERMMEVTETLTPEDADIIRSRLDPGIITQQLQMLLPKAAY---VNLKNHFGLGTDPFE 3568
            +  M          D  I R      II++  ++   + AY   +NL+N F +GT P E
Sbjct: 616  DPLMPPTRGGQEYNDNQIKRIE----IISRSFRLSSFQCAYSGLLNLENPFEVGTLPHE 670


>ref|NP_951030.1| RNA-dependent RNA polymerase [Broad bean wilt virus 1]
          Length = 699

 Score =  255 bits (651), Expect = 2e-64
 Identities = 172/491 (35%), Positives = 251/491 (51%), Gaps = 14/491 (2%)
 Frame = -2

Query: 2346 APRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 2176
            +P     S  K S +   +E          P+I+   D RL    +   D F  GM KY 
Sbjct: 27   SPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA 86

Query: 2175 AVAADMSP-----VTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRG 2011
              A    P     V E   + W    D     P  +E           LNG+     +  
Sbjct: 87   KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAA---------LNGIENMEYFDA 137

Query: 2010 MVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIV 1831
            +V+STSEG+P  L+RK GE GK R++ G PG   +  D  +   I   +E+  T +P + 
Sbjct: 138  LVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEIT-DERILADIHWFEEISKTQVPDLY 196

Query: 1830 GLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGIN 1651
             ++  KDERLP+ K+ ++ K+RLFT+LPM YN  +RK F +FV  +MK  +V+P +VGIN
Sbjct: 197  CIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGIN 256

Query: 1650 PLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRR--LH 1477
            P    W  +  R+  KG +    DYSRFDG  P+C++++IA   + +  +   +R    +
Sbjct: 257  PYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKN 316

Query: 1476 LMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLF---F 1306
            LMLA  +R  + G  LYRV  GIPSGF LTVIVNS++N  L+++++     + SL    F
Sbjct: 317  LMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHF 376

Query: 1305 SDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEK 1126
               V + V GDDNL+SV E  +S+FN   L +F+ + G  + DG DK+K +  EF   E 
Sbjct: 377  DTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTK-VGIEFRTIED 435

Query: 1125 CDFLKRCFKARGD-RYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDK 949
            CDFLKR FK   D  +            LH+V+   +  + A  +N    LREL+  G  
Sbjct: 436  CDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELW-LGSP 494

Query: 948  ELYCKWRRDLI 916
            E    +RR++I
Sbjct: 495  EKAAAFRREVI 505


>ref|NP_945134.1| polyprotein [Broad bean wilt virus 1]
            gi|75555028|sp|Q76L40.1|POL1_BBWVS RecName: Full=RNA1
            polyprotein; AltName: Full=Genome polyprotein B;
            Contains: RecName: Full=Protease cofactor; Contains:
            RecName: Full=Putative helicase; AltName:
            Full=Membrane-binding protein; AltName: Full=NTP-binding
            protein; Short=NTB; Contains: RecName: Full=Viral
            genome-linked protein; AltName: Full=VPg; Contains:
            RecName: Full=Picornain 3C-like protease; Short=3C-like
            protease; Contains: RecName: Full=RNA-directed RNA
            polymerase gi|38044071|dbj|BAD00183.1| polyprotein [Broad
            bean wilt virus 1]
          Length = 1842

 Score =  255 bits (651), Expect = 2e-64
 Identities = 172/491 (35%), Positives = 251/491 (51%), Gaps = 14/491 (2%)
 Frame = -2

Query: 2346 APRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 2176
            +P     S  K S +   +E          P+I+   D RL    +   D F  GM KY 
Sbjct: 1170 SPEHTVGSGGKTSFLETPIEWQLNRPCGKIPSILVKGDVRLAGTENADYDPFAVGMTKYA 1229

Query: 2175 AVAADMSP-----VTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRG 2011
              A    P     V E   + W    D     P  +E           LNG+     +  
Sbjct: 1230 KEAGPFEPNGLDRVCESIAETWHDASDGFEFGPVDLEAA---------LNGIENMEYFDA 1280

Query: 2010 MVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIV 1831
            +V+STSEG+P  L+RK GE GK R++ G PG   +  D  +   I   +E+  T +P + 
Sbjct: 1281 LVLSTSEGYPYRLDRKPGEKGKARYVEGEPGNLEIT-DERILADIHWFEEISKTQVPDLY 1339

Query: 1830 GLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGIN 1651
             ++  KDERLP+ K+ ++ K+RLFT+LPM YN  +RK F +FV  +MK  +V+P +VGIN
Sbjct: 1340 CIECVKDERLPVRKVIKEPKSRLFTVLPMSYNLAIRKKFLNFVRFIMKRRDVLPCQVGIN 1399

Query: 1650 PLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQGDRR--LH 1477
            P    W  +  R+  KG +    DYSRFDG  P+C++++IA   + +  +   +R    +
Sbjct: 1400 PYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNIVGETGAEREQTKN 1459

Query: 1476 LMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLF---F 1306
            LMLA  +R  + G  LYRV  GIPSGF LTVIVNS++N  L+++++     + SL    F
Sbjct: 1460 LMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHF 1519

Query: 1305 SDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEK 1126
               V + V GDDNL+SV E  +S+FN   L +F+ + G  + DG DK+K +  EF   E 
Sbjct: 1520 DTYVAMVVYGDDNLISVSEAISSKFNGNFLVNFMCNLGIKVTDGVDKTK-VGIEFRTIED 1578

Query: 1125 CDFLKRCFKARGD-RYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDK 949
            CDFLKR FK   D  +            LH+V+   +  + A  +N    LREL+  G  
Sbjct: 1579 CDFLKRKFKENADGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELW-LGSP 1637

Query: 948  ELYCKWRRDLI 916
            E    +RR++I
Sbjct: 1638 EKAAAFRREVI 1648



 Score = 84.7 bits (208), Expect = 6e-13
 Identities = 62/191 (32%), Positives = 92/191 (48%), Gaps = 5/191 (2%)
 Frame = -2

Query: 4455 RKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVL 4276
            RKTP  ++  G S VGK+   Q +  + L   +   +  V+SRNG D FWS YK Q+ V 
Sbjct: 477  RKTPFMLFFTGKSGVGKTSVVQRMAANWLQQ-EQLGSNEVYSRNGLDPFWSGYKRQAVVT 535

Query: 4275 YDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPSA 4096
            YDDFGAV  G   +EAEII              L+ KG     S  +  ++N     P +
Sbjct: 536  YDDFGAV-PGSVSNEAEIINVVSSNPHSVMMADLKEKG-MYFDSRLIIASSNFLAANPES 593

Query: 4095 VVHCKKAFENRRLILAEVT-----AVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQF 3931
             VH  +A+E RR ++ +V+     A + G      R+TL +   P++    F+  +YE+ 
Sbjct: 594  GVHDSEAYERRRHVVVQVSLKEDMAYDPGNPCANQRYTLLESKAPFAEKAVFE--SYEEL 651

Query: 3930 LQYTVNQSKQH 3898
              +  N  K H
Sbjct: 652  WSHVYNAFKAH 662


>gb|AAY32935.1| RNA-dependent RNA polymerase [Radish mosaic virus]
          Length = 709

 Score =  253 bits (646), Expect = 9e-64
 Identities = 163/450 (36%), Positives = 244/450 (54%), Gaps = 13/450 (2%)
 Frame = -2

Query: 2256 PAIIHNRDTRLH---DRHLDIFKKGMLKYKAV--AADMSPVTEEEEKIWDLTWDSIFDLP 2092
            P+I+ + D RL        D FK G+LKYK      D   + E  E+I + +W    +  
Sbjct: 58   PSILSSDDPRLEVSGHTDYDPFKAGILKYKDPMGVVDNKLLIEVCEEI-EQSWLDCKEEG 116

Query: 2091 GGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCY 1912
               E     +S ++ +NGV   +    + ++TSEG+P +L+R +GE GK RF+ G     
Sbjct: 117  ETFEE----VSLEQAINGVRDVDYMDRIPLATSEGFPHILSRSHGEKGKIRFVEGDSEAM 172

Query: 1911 TLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPMEYNY 1732
             L     + + +  M+      +P ++G++  KDE+LP  KI++  KTR F+ILPMEYN 
Sbjct: 173  MLIPGTSVAEALEIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPMEYNL 232

Query: 1731 LVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTP 1552
            LVR+ F +FV  +M+  NV+P +VGINP G +WT L  R+  KG N    DYS FDG+  
Sbjct: 233  LVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDGLLS 292

Query: 1551 RCLLIEIARRITLLYNDDQGDRRL--HLMLAATTRLGVAGIGLYRVSGGIPSGFALTVIV 1378
            + ++  ++  I       +  +R   HL++A  +R  +    +++V  GIPSGF LTVI 
Sbjct: 293  KQVMKAMSDMINSFCGGSESSKRKREHLLMACCSRYAICKNSVWKVECGIPSGFPLTVIC 352

Query: 1377 NSLVNHFLVRWSWEHMMASS------SLFFSDCVELAVVGDDNLVSVKEIAASEFNLKKL 1216
            NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV E+    F+ K+L
Sbjct: 353  NSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDGKRL 412

Query: 1215 SSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXXLHW 1036
              FLA    T+ DG DK+   L +F   E CDFLKR FK RG  + AP         LH+
Sbjct: 413  KEFLATLRITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQLHY 471

Query: 1035 VRETNMSNAVATQNNVEGFLRELFHYGDKE 946
            V   N+    A + N+   LRELF +  KE
Sbjct: 472  VNANNLEKHEAYKTNLVTVLRELFMWDKKE 501


>gb|AAX12375.1| polyprotein 1 [Broad bean wilt virus 1]
          Length = 1842

 Score =  253 bits (645), Expect = 1e-63
 Identities = 174/491 (35%), Positives = 253/491 (51%), Gaps = 14/491 (2%)
 Frame = -2

Query: 2346 APRQATTSEIKKSSISADLEALTGEKRKTEPAIIHNRDTRL---HDRHLDIFKKGMLKYK 2176
            AP     S  K S +   +E    +     P+I+   D RL    +   D F  GM KY 
Sbjct: 1170 APEHTVGSGGKTSYLETPVEWQLNKPCGKIPSILIKGDVRLAGTENADYDPFAVGMTKYA 1229

Query: 2175 AVAAD-----MSPVTEEEEKIWDLTWDSIFDLPGGIERKCHLLSEDENLNGVNGDNEYRG 2011
              A       +  V E   + W    D     P  +E           LNG+     +  
Sbjct: 1230 KEAGPFEVCGLDKVCESIVETWHDASDGFEFGPVDLETA---------LNGIENMEYFDA 1280

Query: 2010 MVVSTSEGWPEVLNRKNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIV 1831
            +V+STSEG+P  L+RK GE GK R++ G PG   +  D  +   I   +E+  T +P + 
Sbjct: 1281 LVLSTSEGYPYRLDRKPGEKGKARYVEGEPGSMEIT-DERILADIHWFEEISKTQVPDLY 1339

Query: 1830 GLDTAKDERLPLSKIYQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGIN 1651
             ++  KDERLP+ K+ ++ K+RLFT+LPM YN  VRK F +FV  +MK  +V+P +VGIN
Sbjct: 1340 CIECVKDERLPIRKVLKEPKSRLFTVLPMSYNLAVRKKFLNFVRFIMKRRDVLPCQVGIN 1399

Query: 1650 PLGYDWTILGKRMHAKGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYND--DQGDRRLH 1477
            P    W  +  R+  KG +    DYSRFDG  P+C++++IA   + +  +  +  ++  +
Sbjct: 1400 PYSRQWGKVADRLLEKGNSILCCDYSRFDGFLPKCIMVKIAEMFSNVVGETGESREQTKN 1459

Query: 1476 LMLAATTRLGVAGIGLYRVSGGIPSGFALTVIVNSLVNHFLVRWSWEHMMASSSLF---F 1306
            LMLA  +R  + G  LYRV  GIPSGF LTVIVNS++N  L+++++     + SL    F
Sbjct: 1460 LMLACCSRYAICGRVLYRVENGIPSGFPLTVIVNSILNEILIKYAYWKCFETESLIRDHF 1519

Query: 1305 SDCVELAVVGDDNLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEK 1126
               V +AV GDDNL+SV E  +S FN   L +F+A+ G  + DG DK+K I  EF   E 
Sbjct: 1520 DTHVAMAVYGDDNLISVSEAISSRFNGNFLVNFMANLGIKVTDGVDKTK-IGIEFRTIEN 1578

Query: 1125 CDFLKRCFKARGD-RYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDK 949
            CDFLKR FK   D  +            LH+V+   +  + A  +N    LREL+   D 
Sbjct: 1579 CDFLKRRFKENTDGTWSGVMAEEHLWPQLHFVKAKKVEMSEAYISNCNNILRELW-LEDP 1637

Query: 948  ELYCKWRRDLI 916
                 +RR++I
Sbjct: 1638 GKAATFRREVI 1648



 Score = 83.2 bits (204), Expect = 2e-12
 Identities = 62/191 (32%), Positives = 90/191 (47%), Gaps = 5/191 (2%)
 Frame = -2

Query: 4455 RKTPACIWLYGDSHVGKSVCSQYLIDDVLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVL 4276
            RKTP  ++  G S VGK+   Q +  + L   +   +  V+SRNG D FWS YK Q+ V 
Sbjct: 477  RKTPFMLFFTGKSGVGKTSVVQRMAANWLQQ-EQLGSNEVYSRNGLDPFWSGYKRQAVVT 535

Query: 4275 YDDFGAVSEGGHFDEAEIIRXXXXXXXXXXXXXLEAKGNTCCTSDFVFITANQAGLTPSA 4096
            YDDFGAV  G   +EAEII              L+ KG     S  +  ++N     P +
Sbjct: 536  YDDFGAV-PGNVSNEAEIINVVSSNPHSVMMADLKEKG-MYFDSRLIIASSNFLAANPES 593

Query: 4095 VVHCKKAFENRRLILAEVT-----AVEGGRYRDRYRFTLHQKNEPYSRDDRFQVMNYEQF 3931
             VH  +A+E RR ++ +V+     A + G      R+TL     P++    F+   YE+ 
Sbjct: 594  GVHDSEAYERRRHVVVQVSLKEDVAYDPGNPCANQRYTLLDSKAPFAERAVFE--TYEEL 651

Query: 3930 LQYTVNQSKQH 3898
              +  N  K H
Sbjct: 652  WSHVYNAFKAH 662


>gb|ACE06773.1| polyprotein [Radish mosaic virus]
          Length = 1853

 Score =  253 bits (645), Expect = 1e-63
 Identities = 164/453 (36%), Positives = 242/453 (53%), Gaps = 16/453 (3%)
 Frame = -2

Query: 2256 PAIIHNRDTRLH---DRHLDIFKKGMLKYKAVAADMS-----PVTEEEEKIWDLTWDSIF 2101
            P+I+ + D RL        D FK G+LKYK     +       V EE E+ W        
Sbjct: 1202 PSILSSDDPRLEVSGHTDYDPFKAGILKYKDPMGVLDNKLLIEVCEEIEQSW-------L 1254

Query: 2100 DLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNRKNGEAGKERFLLGLP 1921
            D     E     +S ++ +NGV   +    + ++TSEG+P +L+R +GE GK RF+ G  
Sbjct: 1255 DCKEEGET-FEEVSLEQAINGVRDVDYMDRIPLATSEGFPHILSRSHGEKGKIRFVEGDS 1313

Query: 1920 GCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKIYQDVKTRLFTILPME 1741
                L     + + +  M+      +P ++G++  KDE+LP  KI++  KTR F+ILPME
Sbjct: 1314 EAMMLIPGTSVAEALEIMEAQLENEVPTLIGIECPKDEKLPHRKIFEKPKTRCFSILPME 1373

Query: 1740 YNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHAKGTNWFNGDYSRFDG 1561
            YN LVR+ F +FV  +M+  NV+P +VGINP G +WT L  R+  KG N    DYS FDG
Sbjct: 1374 YNLLVRRRFLTFVRFIMRNRNVLPCQVGINPYGMEWTDLAMRLKRKGNNILCCDYSSFDG 1433

Query: 1560 VTPRCLLIEIARRITLLYNDDQGDRRL--HLMLAATTRLGVAGIGLYRVSGGIPSGFALT 1387
            +  + ++  ++  I       +  +R   HL++A  +R  +    +++V  GIPSGF LT
Sbjct: 1434 LLSKQVMKAMSDMINSFCGGSESSKRKREHLLMACCSRYAICKNSVWKVECGIPSGFPLT 1493

Query: 1386 VIVNSLVNHFLVRWSWEHMMASS------SLFFSDCVELAVVGDDNLVSVKEIAASEFNL 1225
            VI NS+ N  L+R+S++ ++ S       S+ F + V + V GDDNL+SV E+    F+ 
Sbjct: 1494 VICNSIFNEILIRYSFKAILRSQKVPDMVSVSFDEYVSMVVYGDDNLLSVSEVIKPYFDG 1553

Query: 1224 KKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARGDRYLAPXXXXXXXXX 1045
            K+L  FLA    T+ DG DK+   L +F   E CDFLKR FK RG  + AP         
Sbjct: 1554 KRLKEFLATLRITITDGKDKTSPFL-QFRCLEDCDFLKRGFKNRGLYWDAPEEKESLWAQ 1612

Query: 1044 LHWVRETNMSNAVATQNNVEGFLRELFHYGDKE 946
            LH+V   N+    A + N+   LRELF +  KE
Sbjct: 1613 LHYVNANNLEKHEAYKTNLVTVLRELFMWDKKE 1645



 Score = 83.6 bits (205), Expect = 1e-12
 Identities = 86/346 (24%), Positives = 147/346 (42%), Gaps = 10/346 (2%)
 Frame = -2

Query: 4893 LLCPLSMFGVSKTLSCAKDLITIQGGQDA-AGRFFQDIVGGTQEVFYTLTGSKSEFLDYI 4717
            + C  ++  + KT      + T  G   A AG+ F    G  Q+  + + G +S FL   
Sbjct: 324  IFCETTLLSMGKTCQAVNQISTCAGNLKAMAGKLF----GILQDFIWKVFGMESRFLRDA 379

Query: 4716 YATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRL--ILQMDSRKVPG 4543
                  D   W  ++ E   +     +    + +K     K   D    +L++ SR  P 
Sbjct: 380  SLMFEEDVDQWLKDIAECQDSYLAKAYSSQDDIMKMQCLIKKGHDMRSKVLKVTSRISPV 439

Query: 4542 AYITHFNNLLQSLDRALVE--CQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDDVL 4369
               T    + +S+++ L E  CQ    +   RK P  ++ YG+S  GK++    LI D  
Sbjct: 440  LANTVTRGV-ESVEKLLRESLCQ---GIKATRKIPFVVYAYGESRTGKTLVVDKLITDFQ 495

Query: 4368 DSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXXXX 4189
            +     +   V+SRN  D +WS Y+ Q  V  DDFGAV+      EA++I          
Sbjct: 496  NHFGLGKD-TVYSRNPIDQYWSGYRRQPIVSIDDFGAVACDPSM-EAQMIPLVSSAPLPL 553

Query: 4188 XXXXLEAKGNTCCTSDFVFITANQAGLTPSAVVHCKKAFENRRLILAEVTAVEGGRYRDR 4009
                +E KG     S F+F ++N    +P + +   +AF NRR +L  V  ++  +  + 
Sbjct: 554  TMAAIEEKG-MMFDSKFIFCSSNLLEASPESKLQDNQAFRNRRHVLINV-KLDATKPYNM 611

Query: 4008 YRFTLHQKNEPYSRDDRFQVM-----NYEQFLQYTVNQSKQHFSEQ 3886
            + FT +Q  +    D+   V+      Y     Y + + ++H +EQ
Sbjct: 612  HDFTENQIYQILKYDNGTYVVQAEFHTYGDLFSYCLERWEKHENEQ 657


>ref|NP_619518.1| polyprotein [Cowpea severe mosaic virus]
            gi|549316|sp|P36312.1|POL1_CPSMV RecName: Full=RNA1
            polyprotein; AltName: Full=Genome polyprotein B; AltName:
            Full=P1; Contains: RecName: Full=Protease cofactor;
            AltName: Full=32 kDa protein; Contains: RecName:
            Full=Putative helicase; AltName: Full=58 kDa protein;
            AltName: Full=Membrane-binding protein; AltName:
            Full=NTP-binding protein; Short=NTB; Contains: RecName:
            Full=Viral genome-linked protein; AltName: Full=VPg;
            Contains: RecName: Full=Picornain 3C-like protease;
            Short=3C-like protease; AltName: Full=24 kDa protein;
            Contains: RecName: Full=RNA-directed RNA polymerase;
            AltName: Full=87 kDa protein
          Length = 1858

 Score =  252 bits (643), Expect = 2e-63
 Identities = 168/499 (33%), Positives = 257/499 (51%), Gaps = 14/499 (2%)
 Frame = -2

Query: 2316 KKSSISADLEALTGEKRKTEPAIIHNRDTRLHDRHLDIFKKGMLKYKAVAADMSPVTEEE 2137
            K + +    E   G ++  EP+I+ + D RL D+  D F  G+ KY      +     ++
Sbjct: 1182 KTNLVETPKEWHLGTEKTKEPSILSSTDLRLGDKQYDPFVGGIQKYAEPMGIL-----DD 1236

Query: 2136 EKIWDLTWDSI---FDLPGGIERKCHLLSEDENLNGVNGDNEYRGMVVSTSEGWPEVLNR 1966
            E +  +  D +   FD     E     +     +NG+ G      + ++TSEG+P +L R
Sbjct: 1237 EVLRHVATDIVEEWFDCVDPQEDTFEEVDLQVAINGLEGMEYMERVPMATSEGFPHILTR 1296

Query: 1965 KNGEAGKERFLLGLPGCYTLNRDLPMYQRILDMDELCATTIPCIVGLDTAKDERLPLSKI 1786
            K+GE GK RF+ G    + L     +++  L ++E CA T+P +VG++  KDE+LPL KI
Sbjct: 1297 KSGEKGKGRFVYGDGEIFDLIPGTSVHEAYLTLEETCADTVPALVGIECPKDEKLPLRKI 1356

Query: 1785 YQDVKTRLFTILPMEYNYLVRKYFGSFVAELMKLHNVIPTKVGINPLGYDWTILGKRMHA 1606
            Y+  KTR FT+LPMEYN +VR+ F  FV  +MK  + +  +VGINP G +W+ L   +  
Sbjct: 1357 YEKPKTRCFTVLPMEYNLVVRRKFLKFVVFIMKNRHRLSCQVGINPYGMEWSRLAMSLLE 1416

Query: 1605 KGTNWFNGDYSRFDGVTPRCLLIEIARRITLLYNDDQ--GDRRLHLMLAATTRLGVAGIG 1432
            KG N    DYS FDG+  + ++  ++  I  L         +R +L++A  +R  +    
Sbjct: 1417 KGNNILCCDYSSFDGLLTKQVMHLMSEMINELCGGSSRLKQQRTNLLMACCSRYALCKGE 1476

Query: 1431 LYRVSGGIPSGFALTVIVNSLVNHFLVRWSW------EHMMASSSLFFSDCVELAVVGDD 1270
            ++RV  GIPSGF LTVI NS+ N  LVR+S+        + A+ +  FS  V++   GDD
Sbjct: 1477 VWRVECGIPSGFPLTVICNSIFNELLVRYSYIKICQQARVPATITYGFSTFVKMVTYGDD 1536

Query: 1269 NLVSVKEIAASEFNLKKLSSFLADFGFTLKDGSDKSKEILPEFNPPEKCDFLKRCFKARG 1090
            NL+SV+      F+  KL  FL   G T+ DG DK+  +L  F   E CDFLKR FK   
Sbjct: 1537 NLLSVQSAITHVFDGTKLKEFLKLNGITITDGKDKTSPVL-NFRNLEDCDFLKRGFKKES 1595

Query: 1089 D-RYLAPXXXXXXXXXLHWVRETNMSNAVATQNNVEGFLRELFHYGDKELYCKWRRDL-- 919
            D  ++ P         LH+V   N+    A   NV   +REL+ +  +E     R+ +  
Sbjct: 1596 DVVWVGPEEKESLWAQLHYVTTNNLEKHEAYLVNVVNVIRELYLHDPREAAELRRKAIQN 1655

Query: 918  IDLCSKNRVPHPTTYSFEE 862
            +D   +N    PT  + +E
Sbjct: 1656 VDFLKENPKDLPTMAAIKE 1674



 Score = 65.9 bits (159), Expect = 3e-07
 Identities = 81/326 (24%), Positives = 124/326 (38%), Gaps = 3/326 (0%)
 Frame = -2

Query: 4905 KILLLLCPLSMFGVSKTLSCAKDLITIQGG-QDAAGRFFQDIVGGTQEVFYTLTGSKSEF 4729
            K L   C  ++  + KT +    + T  G  ++  GR    +        Y L G +S F
Sbjct: 325  KNLTNFCDGTLVSIGKTCNAVNSINTAAGTIKNLVGRLLSML----SNFAYKLLGLESTF 380

Query: 4728 LDYIYATVGVDFQAWRSEVMELTTATPTSIFLGPQERLKRLRSCKDKADRLILQM--DSR 4555
            L         +   W  ++           ++  Q+ L  LRS   + + +  +M     
Sbjct: 381  LRDASVVFSENVDGWLKQISWCQDQFLAKAYIN-QDELMVLRSLITRGEVMQREMIMGGM 439

Query: 4554 KVPGAYITHFNNLLQSLDRALVECQQALSVGKWRKTPACIWLYGDSHVGKSVCSQYLIDD 4375
            KV        N     L + +       + G  RK P  ++ +G S VGK++    LI+D
Sbjct: 440  KVSPTVCGLINKGCTDLAKLMAGAVMHGTSGT-RKIPFVVYAHGASRVGKTMVINRLIED 498

Query: 4374 VLDSLDYAQTGRVFSRNGSDSFWSCYKNQSAVLYDDFGAVSEGGHFDEAEIIRXXXXXXX 4195
                L+  +   V+ RN  D +WS YK Q  V+ DDFGAVS      EA++I        
Sbjct: 499  FRKELELGEDC-VYPRNVVDDYWSGYKRQPIVVIDDFGAVSSDPS-AEAQLIPLISSAPY 556

Query: 4194 XXXXXXLEAKGNTCCTSDFVFITANQAGLTPSAVVHCKKAFENRRLILAEVTAVEGGRYR 4015
                  L  KG     S  V  ++N    +P + V  + AF NRR +L  V+        
Sbjct: 557  PLNMADLSEKG-MHFDSAIVMCSSNFIECSPESKVRDEMAFRNRRHVLFTVSL------- 608

Query: 4014 DRYRFTLHQKNEPYSRDDRFQVMNYE 3937
                      N PY  DD  +   YE
Sbjct: 609  --------DPNIPYDGDDITKNQIYE 626