BLASTX nr result
ID: Rehmannia26_contig00000009
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia26_contig00000009
(6189 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX19931.1| viral replicase [Nandina mosaic virus] 2424 0.0
dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2400 0.0
dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2399 0.0
dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2395 0.0
dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2395 0.0
dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2394 0.0
dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2393 0.0
dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica ... 2389 0.0
ref|NP_620836.1| replicase [Plantago asiatica mosaic virus] gi|1... 2320 0.0
ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X] gi... 2010 0.0
ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mo... 1549 0.0
gb|ADE10202.1| viral replicase [Hydrangea ringspot virus] 1483 0.0
ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|5... 1475 0.0
gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago a... 1326 0.0
dbj|BAB83122.1| RNA dependent RNA polymerase [Potato virus X] 1243 0.0
sp|P09395.1|RDRP_PVX RecName: Full=RNA replication protein; AltN... 1230 0.0
dbj|BAJ12046.1| RNA dependent RNA polymerase [Potato virus X] 1222 0.0
gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago a... 1070 0.0
ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|A... 952 0.0
gb|AFM77886.1| replicase [Hosta virus X] 946 0.0
>gb|AAX19931.1| viral replicase [Nandina mosaic virus]
Length = 1368
Score = 2424 bits (6283), Expect = 0.0
Identities = 1198/1384 (86%), Positives = 1260/1384 (91%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRH+NPFAQ+P+AADALEALGINSHP
Sbjct: 1 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHTNPFAQSPDAADALEALGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR+FHRGPTHGDFFLNAHV
Sbjct: 61 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRYFHRGPTHGDFFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQDTV++RLENI T+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQDTVLNRLENISTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLT+GHL A NQPT+TA
Sbjct: 181 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTIGHLQAPNQPTVTA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNYLTPERRTFTTT+ YVTVPDIFLPE+YNCRTPISKTIMMQMF
Sbjct: 241 QRLETKGANHLFIFQRGNYLTPERRTFTTTDPYVTVPDIFLPEKYNCRTPISKTIMMQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEF ASLDSHTCFEDVLSG
Sbjct: 301 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFAASLDSHTCFEDVLSG 360
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
NL+QRLLRPLR+D+QR+L FFRGRPSFVKLIKALDWQPITLEFPVR VNTRLRGPPGF +
Sbjct: 361 NLLQRLLRPLRADMQRILHFFRGRPSFVKLIKALDWQPITLEFPVRRVNTRLRGPPGFLS 420
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PFT+P PVNPDDA+T +FREF S T+ + LE S E+ +HTSLKV LS
Sbjct: 421 PFTRPQPVNPDDAETTESFREFIQPLNPSPTATVTEMLENSTESDVTHTSLKVVPQSLSP 480
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 4437
EQL ALHELGN+R GGP+LPK + T S+ L + H P
Sbjct: 481 EQLSALHELGNSRCGGPMLPKRSSNH---------------THTSSDLLRRRH----PRQ 521
Query: 4436 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 4257
P + K +GFEALEIQTDPSTG+ IMPITD R+LP+A +P HW+ P K
Sbjct: 522 QRSTNPPMGSLAAKAKRIGFEALEIQTDPSTGQPIMPITDTRELPRAIMPAHWDSPQFEK 581
Query: 4256 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 4077
++ TLR+LNRFPT W PDRARARAFTSDVKNSRTGKALHRE+QTWKETQTMLTDN +
Sbjct: 582 IIATLRNLNRFPTPWSPDRARARAFTSDVKNSRTGKALHRESQTWKETQTMLTDNAEIHT 641
Query: 4076 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 3897
AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 642 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 701
Query: 3896 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 3717
FV S+ P+VIFDDYGKLPQGYIEAFAMTHA+LEL+ILTGDPRQSTHHEANEEALISKL+P
Sbjct: 702 FVSSRGPVVIFDDYGKLPQGYIEAFAMTHANLELIILTGDPRQSTHHEANEEALISKLSP 761
Query: 3716 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 3537
ATT FSELSRYYINATHRNSKFLANKLG+YSSN CPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 762 ATTTFSELSRYYINATHRNSKFLANKLGIYSSNHCPLKVTYGFQPQPGLHLLVPSLVKKA 821
Query: 3536 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 3357
AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDS HFVNSNAQSS
Sbjct: 822 AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSNHFVNSNAQSS 881
Query: 3356 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESL 3177
AFWEKLEATPYLKTFLSLVREDKI EFS PVE+ TT LDDF+E L
Sbjct: 882 AFWEKLEATPYLKTFLSLVREDKIEEFSAPPDPPKSVMPPVTHFPVEECTTALDDFREEL 941
Query: 3176 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 2997
DKF+REIFTEAHGHTNCVQ DDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN+EEF
Sbjct: 942 HDKFDREIFTEAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANIEEF 1001
Query: 2996 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 2817
RAKKDLGDILW NYHKAM LPKEQP+FSE+LWTRCAEEVQNTYLKKS++Q+KGGERRQSP
Sbjct: 1002 RAKKDLGDILWTNYHKAMNLPKEQPDFSEELWTRCAEEVQNTYLKKSLNQLKGGERRQSP 1061
Query: 2816 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 2637
DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP
Sbjct: 1062 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 1121
Query: 2636 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 2457
NNIMINCEKTPQDLSRWVL+YWDFSKP+YANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1122 NNIMINCEKTPQDLSRWVLSYWDFSKPAYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1181
Query: 2456 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 2277
VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF IPEGTAQIYAGDD
Sbjct: 1182 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFNIPEGTAQIYAGDD 1241
Query: 2276 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 2097
CAIAQVCPEKPSFALLK+RIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1242 CAIAQVCPEKPSFALLKDRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1301
Query: 2096 ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1917
ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGD+L DLLSPRQAHLHQVTVRDLVKFGG
Sbjct: 1302 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDELHDLLSPRQAHLHQVTVRDLVKFGG 1361
Query: 1916 SPFL 1905
SPFL
Sbjct: 1362 SPFL 1365
>dbj|BAG12153.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2400 bits (6220), Expect = 0.0
Identities = 1191/1388 (85%), Positives = 1250/1388 (90%), Gaps = 4/1388 (0%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1 MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLT Q T+TA
Sbjct: 181 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTTPGQITVTA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPD+FLP +YNCRTPISKTIMMQMF
Sbjct: 241 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDVFLPAKYNCRTPISKTIMMQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
NL+QR+LRPL+S I ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361 NLLQRMLRPLKSGITQLLNFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PF +P PVNPDDA+T ++F+ F + T+ +LE AE H SL + L
Sbjct: 421 PFARPQPVNPDDAETTQSFQAFCQATITAEA-----ALEQQAETPDEHQSLSLKCPTLPE 475
Query: 4616 EQLRALHELGNTRLGGPLLPK----ITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQ 4449
QL ALHELGNTR GGPLLPK +T E + P + + T
Sbjct: 476 HQLWALHELGNTRCGGPLLPKGPAKLTTVEPCPDLPAENSANPEPPRKTT------QTLD 529
Query: 4448 VPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEP 4269
+P DP TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P
Sbjct: 530 LPHPEDPTTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRAEGHAHWQGP 589
Query: 4268 GLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNV 4089
+ ++++TLRS NR+PT W PDR+RA+AFTSDVKNSRTGKALHRE+Q WKETQTML +N
Sbjct: 590 DMERIISTLRSFNRYPTPWNPDRSRAKAFTSDVKNSRTGKALHRESQVWKETQTMLAENS 649
Query: 4088 TANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 3909
NLAISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRT
Sbjct: 650 QTNLAISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRT 709
Query: 3908 FERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALIS 3729
FERAFVCS+ P+VIFDDYGKLPQGY+EAFA+THASLELVILTGDPRQSTHHE+NEEALIS
Sbjct: 710 FERAFVCSRCPVVIFDDYGKLPQGYLEAFALTHASLELVILTGDPRQSTHHESNEEALIS 769
Query: 3728 KLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSL 3549
KL PAT IFSELSRYYINATHRNSKFLANKLGVYSSN CPLKVTYGFQPQPGLHLLVPSL
Sbjct: 770 KLPPATAIFSELSRYYINATHRNSKFLANKLGVYSSNPCPLKVTYGFQPQPGLHLLVPSL 829
Query: 3548 VKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 3369
VKKAAFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN
Sbjct: 830 VKKAAFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSN 889
Query: 3368 AQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDF 3189
AQSSAFWEKLEATPYLKTFLSLVREDKI EF+ PVED TTTLDDF
Sbjct: 890 AQSSAFWEKLEATPYLKTFLSLVREDKIEEFTATTAEAKPVAPPCTHFPVEDGTTTLDDF 949
Query: 3188 KESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEAN 3009
KE L DKF+REIF HGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLTIS PEAN
Sbjct: 950 KEELHDKFDREIFNPTHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTISNPEAN 1009
Query: 3008 LEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGER 2829
L EFRAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS++QIKGGER
Sbjct: 1010 LAEFRAKKDLGDILWENYRKAMKLPNEQPDFSEDLWIRCAEEVQNTYLKKSVAQIKGGER 1069
Query: 2828 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRD 2649
RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFR+
Sbjct: 1070 RQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRE 1129
Query: 2648 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 2469
ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN
Sbjct: 1130 ALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFN 1189
Query: 2468 LPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIY 2289
LPEWVIEGYLDIKLSPKIFLGTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIY
Sbjct: 1190 LPEWVIEGYLDIKLSPKIFLGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIY 1249
Query: 2288 AGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 2109
AGDDCAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL
Sbjct: 1250 AGDDCAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKL 1309
Query: 2108 HASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLV 1929
HASLELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLV
Sbjct: 1310 HASLELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLV 1369
Query: 1928 KFGGSPFL 1905
KFGGSPFL
Sbjct: 1370 KFGGSPFL 1377
>dbj|BAG12143.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2399 bits (6218), Expect = 0.0
Identities = 1191/1384 (86%), Positives = 1246/1384 (90%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1 MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TA
Sbjct: 181 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361 NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PF +P PVNPDDA+T ++F+ F + T+ +L +E H SL + L
Sbjct: 421 PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPE 475
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 4437
QL ALHELGN R GGPLLPK P + R +D +P
Sbjct: 476 HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533
Query: 4436 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 4257
DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + +
Sbjct: 534 QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593
Query: 4256 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 4077
+L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NL
Sbjct: 594 ILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653
Query: 4076 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 3897
AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654 AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713
Query: 3896 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 3717
FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714 FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773
Query: 3716 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 3537
AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774 ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833
Query: 3536 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 3357
AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834 AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893
Query: 3356 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESL 3177
AFWEKLEATPYLKTFLSLVREDKI EF+ PVED TTTLDDFKE L
Sbjct: 894 AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEEL 953
Query: 3176 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 2997
DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954 RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013
Query: 2996 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 2817
RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073
Query: 2816 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 2637
DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133
Query: 2636 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 2457
NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193
Query: 2456 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 2277
VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253
Query: 2276 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 2097
CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313
Query: 2096 ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1917
ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373
Query: 1916 SPFL 1905
S FL
Sbjct: 1374 SSFL 1377
>dbj|BAG12128.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2395 bits (6208), Expect = 0.0
Identities = 1189/1384 (85%), Positives = 1245/1384 (89%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1 MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TA
Sbjct: 181 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361 NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PF +P PVNPDDA+T ++F+ F + T+ +L +E H SL + + L
Sbjct: 421 PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEXTLAQQSETPDEHQSLSLKCSTLPE 475
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 4437
QL ALHELGN R GGPLLPK P + R +D +P
Sbjct: 476 HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533
Query: 4436 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 4257
DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + +
Sbjct: 534 QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593
Query: 4256 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 4077
+L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NL
Sbjct: 594 ILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653
Query: 4076 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 3897
AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654 AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713
Query: 3896 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 3717
FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714 FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773
Query: 3716 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 3537
AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774 ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833
Query: 3536 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 3357
AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834 AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893
Query: 3356 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESL 3177
AFWEKLEATPYLKTFLSLVREDKI EF+ PVED TTTLDDFKE L
Sbjct: 894 AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEEL 953
Query: 3176 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 2997
DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954 RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013
Query: 2996 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 2817
RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073
Query: 2816 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 2637
DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133
Query: 2636 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 2457
NNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193
Query: 2456 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 2277
VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253
Query: 2276 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 2097
CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313
Query: 2096 ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1917
ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373
Query: 1916 SPFL 1905
S FL
Sbjct: 1374 SSFL 1377
>dbj|BAG12123.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2395 bits (6207), Expect = 0.0
Identities = 1189/1384 (85%), Positives = 1245/1384 (89%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1 MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TA
Sbjct: 181 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361 NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PF +P PVNPDDA+T ++F+ F + T+ +L +E H SL + + L
Sbjct: 421 PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPE 475
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 4437
QL ALHELGN R GGPLLPK P + R +D +P
Sbjct: 476 HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533
Query: 4436 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 4257
DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + +
Sbjct: 534 QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593
Query: 4256 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 4077
+L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NL
Sbjct: 594 ILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653
Query: 4076 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 3897
AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654 AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713
Query: 3896 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 3717
FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714 FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773
Query: 3716 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 3537
AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774 ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833
Query: 3536 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 3357
AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834 AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893
Query: 3356 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESL 3177
AFWEKLEATPYLKTFLSLVREDKI EF+ PVED TTTLDDFKE L
Sbjct: 894 AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEEL 953
Query: 3176 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 2997
DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954 RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013
Query: 2996 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 2817
RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073
Query: 2816 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 2637
DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133
Query: 2636 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 2457
NNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193
Query: 2456 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 2277
VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253
Query: 2276 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 2097
CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313
Query: 2096 ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1917
ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373
Query: 1916 SPFL 1905
S FL
Sbjct: 1374 SSFL 1377
>dbj|BAG12148.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2394 bits (6204), Expect = 0.0
Identities = 1188/1384 (85%), Positives = 1244/1384 (89%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1 MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TA
Sbjct: 181 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361 NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PF +P PVNPDDA+T ++F+ F + T+ +L +E H SL + L
Sbjct: 421 PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPE 475
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 4437
QL ALHELGN R GGPLLPK P + R +D +P
Sbjct: 476 HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533
Query: 4436 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 4257
DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + +
Sbjct: 534 QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593
Query: 4256 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 4077
+L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NL
Sbjct: 594 ILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653
Query: 4076 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 3897
AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654 AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713
Query: 3896 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 3717
FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714 FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773
Query: 3716 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 3537
AT IFSELSRYYINATHRNSK LANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774 ATAIFSELSRYYINATHRNSKLLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833
Query: 3536 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 3357
AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834 AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893
Query: 3356 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESL 3177
AFWEKLEATPYLKTFLSLVREDKI EF+ PVED TTTLDDFKE L
Sbjct: 894 AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEEL 953
Query: 3176 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 2997
DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954 RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013
Query: 2996 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 2817
RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073
Query: 2816 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 2637
DFHEH ILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHHILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133
Query: 2636 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 2457
NNIMINCE+TPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCERTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193
Query: 2456 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 2277
VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253
Query: 2276 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 2097
CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313
Query: 2096 ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1917
ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373
Query: 1916 SPFL 1905
S FL
Sbjct: 1374 SSFL 1377
>dbj|BAG12133.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2393 bits (6201), Expect = 0.0
Identities = 1188/1384 (85%), Positives = 1244/1384 (89%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1 MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TA
Sbjct: 181 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361 NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PF +P PVNPDDA+T ++F+ F + T+ +L +E H SL + + L
Sbjct: 421 PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCSTLPE 475
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 4437
QL ALHELGN R G PLLPK P + R +D +P
Sbjct: 476 HQLWALHELGNARCGAPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533
Query: 4436 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 4257
DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P + +
Sbjct: 534 QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMER 593
Query: 4256 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 4077
+L+TLR LNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQTMLT+N NL
Sbjct: 594 ILSTLRGLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQTMLTENSQTNL 653
Query: 4076 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 3897
AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 654 AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 713
Query: 3896 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 3717
FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714 FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773
Query: 3716 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 3537
AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA
Sbjct: 774 ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 833
Query: 3536 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 3357
AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834 AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893
Query: 3356 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESL 3177
AFWEKLEATPYLKTFLSLVREDKI EF+ PVED TTTLDDFKE L
Sbjct: 894 AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKRVAPPCTHFPVEDGTTTLDDFKEEL 953
Query: 3176 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 2997
DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954 RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013
Query: 2996 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 2817
RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073
Query: 2816 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 2637
DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133
Query: 2636 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 2457
NNIMINCEKTPQDLSRWVLN WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNCWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193
Query: 2456 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 2277
VIEGYLDIKLSPKIF+GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253
Query: 2276 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 2097
CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313
Query: 2096 ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1917
ELAKAQKKAGVKDAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373
Query: 1916 SPFL 1905
S FL
Sbjct: 1374 SSFL 1377
>dbj|BAG12138.1| RNA-dependent RNA polymerase [Plantago asiatica mosaic virus]
Length = 1380
Score = 2389 bits (6192), Expect = 0.0
Identities = 1186/1384 (85%), Positives = 1243/1384 (89%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQTPEAADALEALGINSHP
Sbjct: 1 MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQTPEAADALEALGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQDT+I RLENIPT+IAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQDTIIKRLENIPTSIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFH Y QLEWLTVGHLT Q T+TA
Sbjct: 181 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHNYSQLEWLTVGHLTTPGQITVTA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
NL+QR+LRPLRS + ++L FFRGRPSFVKLIKALDWQPITLEFPVR VNT LRG PGF +
Sbjct: 361 NLLQRMLRPLRSGLTQLLDFFRGRPSFVKLIKALDWQPITLEFPVRKVNTHLRGAPGFDS 420
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PF +P PVNPDDA+T ++F+ F + T+ +L +E H SL + L
Sbjct: 421 PFARPQPVNPDDAETTQSFQAFCQAT-----ATVEATLAQQSETPDEHQSLSLKCPTLPE 475
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 4437
QL ALHELGN R GGPLLPK P + R +D +P
Sbjct: 476 HQLWALHELGNARCGGPLLPK-GPAKLTRAEPCPDLPAEPQAVPEPPHKTTQSSD-LPHP 533
Query: 4436 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 4257
DP+TLPWVAWLPKLNALGFEALEIQTDPSTGE+IMPITD R+LP+A HW P +++
Sbjct: 534 QDPSTLPWVAWLPKLNALGFEALEIQTDPSTGEMIMPITDTRELPRADGHAHWQGPDMAR 593
Query: 4256 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 4077
+L+TLRSLNR+PT W PDRARA+AFTSDVKNSRTGKALHRE+Q WKETQ MLT+N NL
Sbjct: 594 ILSTLRSLNRYPTPWNPDRARAKAFTSDVKNSRTGKALHRESQVWKETQAMLTENSQTNL 653
Query: 4076 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 3897
AISVIHGAGGSGKSQALQTLLRQ P+LPIEVVLPTNELRLDW KKLPHNPPEQFRTFERA
Sbjct: 654 AISVIHGAGGSGKSQALQTLLRQYPNLPIEVVLPTNELRLDWPKKLPHNPPEQFRTFERA 713
Query: 3896 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 3717
FVCS+ P+VIFDDYGKLPQGY+EAFAMTHASLELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 714 FVCSRCPVVIFDDYGKLPQGYLEAFAMTHASLELVILTGDPRQSTHHESNEEALISKLPP 773
Query: 3716 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 3537
AT IFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQP+PGLHLLVPSLVKKA
Sbjct: 774 ATAIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPRPGLHLLVPSLVKKA 833
Query: 3536 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 3357
AFTDAGHKVSTYAGCQGITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS
Sbjct: 834 AFTDAGHKVSTYAGCQGITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 893
Query: 3356 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESL 3177
AFWEKLEATPYLKTFLSLVREDKI EF+ PVED TTTLDDFKE L
Sbjct: 894 AFWEKLEATPYLKTFLSLVREDKIEEFTAIPAEAKHVAPPCTHFPVEDGTTTLDDFKEEL 953
Query: 3176 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 2997
DKF+REIF AHGHTNCVQ DDPTTQLFSHQQAKDEALLWETI ARLT+S PEANL EF
Sbjct: 954 RDKFDREIFNPAHGHTNCVQTDDPTTQLFSHQQAKDEALLWETINARLTLSNPEANLAEF 1013
Query: 2996 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 2817
RAKKDLGDILW NY KAMKLP EQP+FSEDLW RCAEEVQNTYLKKS+SQIKGGERRQSP
Sbjct: 1014 RAKKDLGDILWENYRKAMKLPSEQPDFSEDLWIRCAEEVQNTYLKKSVSQIKGGERRQSP 1073
Query: 2816 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 2637
DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL P
Sbjct: 1074 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRP 1133
Query: 2636 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 2457
NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1134 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1193
Query: 2456 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 2277
VIEGYLDIKLSPKIF+GTL+IMRLTGEGP FDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1194 VIEGYLDIKLSPKIFMGTLTIMRLTGEGPAFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1253
Query: 2276 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 2097
CAIAQVCPEKPSF+LLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1254 CAIAQVCPEKPSFSLLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1313
Query: 2096 ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1917
ELAKAQKKAGVKDAI+NV+ NYSLDAKLAYSLGDDLQDLLSP QA LHQVTVRDLVKFGG
Sbjct: 1314 ELAKAQKKAGVKDAITNVVDNYSLDAKLAYSLGDDLQDLLSPHQARLHQVTVRDLVKFGG 1373
Query: 1916 SPFL 1905
S FL
Sbjct: 1374 SSFL 1377
>ref|NP_620836.1| replicase [Plantago asiatica mosaic virus]
gi|1173174|sp|Q07518.1|RDRP_P1AMV RecName: Full=RNA
replication protein; AltName: Full=156 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|311645|emb|CAA79761.1| 156K-protein
[Plantago asiatica mosaic virus]
Length = 1385
Score = 2320 bits (6011), Expect = 0.0
Identities = 1151/1384 (83%), Positives = 1225/1384 (88%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVFSQLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALEALGINSHP
Sbjct: 1 MSNVRNVFSQLTDPSLKAVIQDEAYRVLKRELAQTRHTNPFAQSPEAADALEALGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAIT HTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGD FLNAHV
Sbjct: 61 YAITSHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDHFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQ+T+I+RL +IPT IAFMGDTLHFLSPSF+TALFAHSP+LQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQETIINRLADIPTQIAFMGDTLHFLSPSFLTALFAHSPRLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
E RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTA PT+TA
Sbjct: 181 EPSTS-RSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAPGCPTVTA 239
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNY+TPERRTF T + YVTVP IFLPE YNCRTPISKT MMQMF
Sbjct: 240 QRLETKGANHLFIFQRGNYITPERRTFATNDQYVTVPHIFLPENYNCRTPISKTTMMQMF 299
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKS KEA+ + +QLISTKELQHYQPSEITLLVNYFEFTA+LDSHTCFEDV
Sbjct: 300 FYIKSGKEAQREGHLGQVQQLISTKELQHYQPSEITLLVNYFEFTATLDSHTCFEDV-PP 358
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
L + I R+LQFFRGRPSFVKLIKALDWQPITLEFPVR V T +RGPPGF N
Sbjct: 359 KLAPKTTPAPPLGISRILQFFRGRPSFVKLIKALDWQPITLEFPVRDVRTTVRGPPGFKN 418
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PFT+P PVNP+DAD F++FS + ++ T+ LE SAE+ HT LKV + LS
Sbjct: 419 PFTQPQPVNPEDADISSRFQDFSRATNSTPKPTVEAVLEASAESPDHHTQLKVLCSALSE 478
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 4437
QL A+H LG++R GGPLLP++T + E ++AS A + D P
Sbjct: 479 GQLEAIHALGHSRCGGPLLPELTAKSTPVEQCPDLPPCPTKSQASPASSNPSGPDAQPTA 538
Query: 4436 SDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLSK 4257
+P TLPWVAWLPKLNALGFEALE+Q DPSTGE+IMPITD ++LP+ATLP HW L +
Sbjct: 539 QNPETLPWVAWLPKLNALGFEALEVQHDPSTGEMIMPITDTQELPRATLPAHWQGHNLER 598
Query: 4256 VLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTANL 4077
+L+TLRSLNRFPT W PDR RARAFTSDVKNSRTGKALHRE+QTWKETQTMLT+N L
Sbjct: 599 ILSTLRSLNRFPTPWSPDRTRARAFTSDVKNSRTGKALHRESQTWKETQTMLTENTQTEL 658
Query: 4076 AISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 3897
AISVIHGAGGSGKSQALQTLLRQ+ LPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA
Sbjct: 659 AISVIHGAGGSGKSQALQTLLRQDHSLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERA 718
Query: 3896 FVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAP 3717
FV S SP+VIFDDYGKLPQGY+EAFA+THA+LELVILTGDPRQSTHHE+NEEALISKL P
Sbjct: 719 FVSSHSPVVIFDDYGKLPQGYLEAFALTHANLELVILTGDPRQSTHHESNEEALISKLPP 778
Query: 3716 ATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKA 3537
ATTI+S SRYYINAT RNSKFLANKLGVYS+NSCPL VTYGFQP PGLHLLVPSL+KKA
Sbjct: 779 ATTIYSAFSRYYINATLRNSKFLANKLGVYSANSCPLNVTYGFQPLPGLHLLVPSLMKKA 838
Query: 3536 AFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSS 3357
AFTDAGHKVS+YAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVN+NAQSS
Sbjct: 839 AFTDAGHKVSSYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNTNAQSS 898
Query: 3356 AFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESL 3177
AFWEKLEATPYLKTFLSLVREDKI EF PVE+ TTLDDFKE L
Sbjct: 899 AFWEKLEATPYLKTFLSLVREDKITEFQAPADAPKPVTPPVTHFPVEEPATTLDDFKEEL 958
Query: 3176 SDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEF 2997
DKF+REIFT GHTNCVQ DDPTTQLFSHQQAKDEALLWE I+ARL ISTPEAN+EEF
Sbjct: 959 RDKFDREIFTSDRGHTNCVQTDDPTTQLFSHQQAKDEALLWEMIRARLKISTPEANIEEF 1018
Query: 2996 RAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSP 2817
RAKKDLGDILW NYH+AM LPKEQP+FSEDLW RCAEEVQNTYLKK+++Q+KGGERRQSP
Sbjct: 1019 RAKKDLGDILWVNYHRAMGLPKEQPDFSEDLWNRCAEEVQNTYLKKTMAQLKGGERRQSP 1078
Query: 2816 DFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 2637
DFHEHQILIFLKSQWVKKMEKLGAK+IKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP
Sbjct: 1079 DFHEHQILIFLKSQWVKKMEKLGAKEIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSP 1138
Query: 2636 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 2457
NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW
Sbjct: 1139 NNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEW 1198
Query: 2456 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDD 2277
VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRF+IPEGTAQIYAGDD
Sbjct: 1199 VIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGDD 1258
Query: 2276 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 2097
CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL
Sbjct: 1259 CAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASL 1318
Query: 2096 ELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1917
ELAKAQKKAGV+DAI+NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGG
Sbjct: 1319 ELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGG 1378
Query: 1916 SPFL 1905
SPFL
Sbjct: 1379 SPFL 1382
>ref|NP_702988.1| RNA-dependent RNA polymerase [Tulip virus X]
gi|23491554|dbj|BAC16785.1| RNA-dependent RNA polymerase
[Tulip virus X]
Length = 1361
Score = 2010 bits (5208), Expect = 0.0
Identities = 1007/1394 (72%), Positives = 1131/1394 (81%), Gaps = 10/1394 (0%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSN+RNVF+QLTDPSLKAVIQDEAYR +K+EL TRHSNPFAQ+P AAD LE LGINSHP
Sbjct: 1 MSNLRNVFAQLTDPSLKAVIQDEAYRVMKKELTATRHSNPFAQSPAAADTLELLGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
AITPHTHAAAKAIESDLYEV SHYLPKENPV+FLFMKP+KLR+FHRGP H D FLNA++
Sbjct: 61 LAITPHTHAAAKAIESDLYEVTSHYLPKENPVTFLFMKPSKLRYFHRGPQHSDIFLNAYI 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYP DTVI + I T +AFMGDTLHFL PSF+T+LFA SPKLQTLYAT+VLPP
Sbjct: 121 EPKDVPRYPTDTVIENISEITTPLAFMGDTLHFLEPSFITSLFARSPKLQTLYATMVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSLYP++YTLTYS+DGFMYIPGGHAGASY+HKYDQL+WLT G+L + + T+TA
Sbjct: 181 EALYRLRSLYPEVYTLTYSDDGFMYIPGGHAGASYYHKYDQLQWLTAGYLISEST-TVTA 239
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRG YLTPERRTFTT YVTVP+IFLP N RTPI+KT+ MQ+F
Sbjct: 240 QRLETKGANHLFIFQRGRYLTPERRTFTTATSYVTVPEIFLPSSANARTPITKTLAMQIF 299
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKE +ERD+WAKFRQLISTKELQH+QP E TLLVNYF+F A+LDS TC ED+LSG
Sbjct: 300 FYIKSVKECRERDLWAKFRQLISTKELQHFQPDEATLLVNYFDFVANLDSATCHEDILSG 359
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
+L+ RLLRP R + Q +++FF+G P KLIKAL WQP+ LEF V TV R PPGF +
Sbjct: 360 SLLTRLLRPARVNWQALVRFFKGSPDHTKLIKALQWQPVLLEFKVSTVLVHKRTPPGFRH 419
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
P +P PVN DA T A ++ SL + + LS
Sbjct: 420 PLCRPLPVNEVDALTTAA---------------------------CANQSLPLDN--LSE 450
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQVPVN 4437
+QL ALH LG+ R G LP +P + E T ++A + T V V+
Sbjct: 451 DQLEALHVLGSLRTDGESLP--SPPKAPLETGPHPTP----TISAAGPTKTVPTPNVEVS 504
Query: 4436 S---------DPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPE 4284
+ DP TLPW AWLP L ALGFEA EIQTDP IMPITD++ LP T E
Sbjct: 505 ANPLTGTPLPDPDTLPWKAWLPHLRALGFEASEIQTDPRDHSTIMPITDIQTLPHETFDE 564
Query: 4283 HWNEPG-LSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQT 4107
+ + KV+ TL+ LNR PT W PDR RARA+ SD+KNSRTGKALH+E+Q WKETQT
Sbjct: 565 YDSTSSPFDKVVITLKQLNRSPTPWTPDRLRARAYASDIKNSRTGKALHKESQNWKETQT 624
Query: 4106 MLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNP 3927
LT+ L +SVIHGAGGSGKSQALQT+LR +PDLP+EVVLPTNELR DWL+KLPHNP
Sbjct: 625 RLTETSETRLGLSVIHGAGGSGKSQALQTMLRNHPDLPVEVVLPTNELRXDWLRKLPHNP 684
Query: 3926 PEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEAN 3747
PEQFRTFERAFV S +P+VIFDDYGKLPQG++EAFA+ L+L ILTGDPRQSTHHE+N
Sbjct: 685 PEQFRTFERAFVSSTAPVVIFDDYGKLPQGFLEAFALCRPGLKLAILTGDPRQSTHHESN 744
Query: 3746 EEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLH 3567
E+A+I++L PAT IFS L RYYINATHRN K LANKLGVYSSN PL V+YGF+P+PGLH
Sbjct: 745 EQAMIAQLEPATKIFSALCRYYINATHRNVKELANKLGVYSSNPSPLHVSYGFRPEPGLH 804
Query: 3566 LLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSI 3387
LLVPSLVKKAAF DAGHKVSTYAGCQGITAPKVQILLD+DTTMC+ EVLYTALSRAVDSI
Sbjct: 805 LLVPSLVKKAAFADAGHKVSTYAGCQGITAPKVQILLDSDTTMCSSEVLYTALSRAVDSI 864
Query: 3386 HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKT 3207
HF+NSNAQSSAFWEKLEATPYLKTFLSLVRE K+ EF+ PVE+ +
Sbjct: 865 HFINSNAQSSAFWEKLEATPYLKTFLSLVREHKLEEFTAVEDPPQEVAPPVTHFPVENAS 924
Query: 3206 TTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTI 3027
TL ++SL+DK++REI HG TNCVQ +D T QLFSHQQAKDEALLWETI ARL +
Sbjct: 925 HTLGLIQDSLADKYDREILNTNHGFTNCVQTEDLTVQLFSHQQAKDEALLWETIDARLRL 984
Query: 3026 STPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQ 2847
STPEANL EF AKKDLGD+LW NYH+AMKLPKEQP+FS +LW RCA EVQ TYL KS+ Q
Sbjct: 985 STPEANLAEFHAKKDLGDVLWENYHRAMKLPKEQPDFSPELWERCAAEVQQTYLSKSLQQ 1044
Query: 2846 IKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARY 2667
IKGGERRQSPDF E++ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTMARY
Sbjct: 1045 IKGGERRQSPDFPENKILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQAAVMLYGTMARY 1104
Query: 2666 MRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEIL 2487
MRR+RDAL PNNIMINCE+TP DLSRWV N+WDF+KP YANDFTAFDQSQDGAMLQFEIL
Sbjct: 1105 MRRYRDALGPNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEIL 1164
Query: 2486 KAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPE 2307
KAK+FNLPEWVIEGYLDIKL+P+IF GTL+IMRLTGEGPTFDANTECNIAYTHTRF IP+
Sbjct: 1165 KAKFFNLPEWVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPD 1224
Query: 2306 GTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLI 2127
AQ+YAGDDCAIA+VC EKPSFALLKNRIALQAKPAY PQ RG WAEFCGYLITPKGLI
Sbjct: 1225 HVAQLYAGDDCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLI 1284
Query: 2126 KDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQV 1947
KDPLKLH+SLELAKA +K G KDAI+NV+ANYSLDAK+AYSLGDDLQDLLSP QAHLHQV
Sbjct: 1285 KDPLKLHSSLELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSPEQAHLHQV 1344
Query: 1946 TVRDLVKFGGSPFL 1905
TVRDL KFGGSPFL
Sbjct: 1345 TVRDLTKFGGSPFL 1358
>ref|NP_042695.1| RNA-dependent RNA polymerase [Cassava common mosaic virus]
gi|773405|gb|AAC54775.1| ORF 1; putative RNA dependent
RNA polymerase [Cassava common mosaic virus]
gi|1587823|prf||2207297A ORF 1
Length = 1449
Score = 1549 bits (4010), Expect = 0.0
Identities = 812/1462 (55%), Positives = 998/1462 (68%), Gaps = 78/1462 (5%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
M+ VRNVFSQ+TDPSLKAVIQD++YRT+K EL Q + NP+AQT EAAD LE LG+ +HP
Sbjct: 1 MALVRNVFSQITDPSLKAVIQDDSYRTIKAELNQAKIINPYAQTGEAADLLETLGVITHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAI HTHAA KA+E DLY VSHYLP+++PV+F+FMKPAKL++ RGP H D F+N+ V
Sbjct: 61 YAIATHTHAAGKALELDLYHSVSHYLPRKSPVTFMFMKPAKLQYLRRGPQHRDHFVNSWV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKD+ RYP+ TV+ + I T+IAFMGDTLHFL+P FV LFA SPKL+T YAT+VLPP
Sbjct: 121 EPKDLARYPEQTVVDGIPPIQTSIAFMGDTLHFLTPKFVGTLFARSPKLKTFYATMVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLT--AANQP-- 5349
EAL+++ SLYPQIYTL Y E GF+Y PGGHAGASY+H+Y QL WL VG + N P
Sbjct: 181 EALHKMNSLYPQIYTLQYKEKGFIYTPGGHAGASYYHEYSQLGWLDVGLIEYFEENAPDG 240
Query: 5348 --------TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCR 5193
+TAQR+ETKGANHLF+FQRG TP+ R+ T Y+TVP +FLP+++N R
Sbjct: 241 SEYLGTKWAVTAQRIETKGANHLFVFQRGRLQTPQMRSIATNTQYITVPAVFLPKKFNSR 300
Query: 5192 TPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASL 5013
P+ KTI QMF YIKSVK+ ERDI++K RQLI T ELQ Y P E+ LL NYF + L
Sbjct: 301 QPLKKTIAQQMFLYIKSVKQVTERDIYSKLRQLIKTSELQEYSPDELVLLANYFMLISEL 360
Query: 5012 DSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSF--------------------V 4893
S E+VL+G+L ++L RP++S + + G+P F V
Sbjct: 361 SSKASAEEVLAGSLFKKLFRPIKSKVTAFIHKLFGQPEFAQLLEALLWTNVDLILPVRYV 420
Query: 4892 KLIKALDWQPITLEFPVRTV-------NTRLRGPPGFHNPFTKPHPV------------- 4773
K++ L + F RT+ N L ++ KP P
Sbjct: 421 KILSCLGGWDNEMPFKFRTLPGESDLSNDELGPQLSHYDTSPKPAPSAIEASEEAAALLL 480
Query: 4772 ---------------NPDDADTMRAFREFSYTSETSTPTTIADS-LEGSAENLASH-TSL 4644
+ D + + + T +P++ S LE + +A+ T L
Sbjct: 481 KTRGLVGKRRVARLRSEGDPEVAACLKIKGEPTTTQSPSSSGLSVLEKELDQIATQQTKL 540
Query: 4643 KVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQG 4464
V + L++ P LP ++PE + R +
Sbjct: 541 IVQEEEREDFIKTVLNKRRKACEDKPTLP-LSPELEKRHEALKSKAESSEASKTEPRKDE 599
Query: 4463 DHTDQVPV----NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKA 4296
++T+ V N+ A LPW W+PKLNALGFEA E Q P T +IMPITD+ K
Sbjct: 600 NYTEMVNKTLIENAKEAGLPWAVWMPKLNALGFEAKEKQISPITKSMIMPITDI----KT 655
Query: 4295 TLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKE 4116
+P H ++L L++L+R PT W PD RA++FTSD+KN RTGK L +E+Q+WKE
Sbjct: 656 GIPVHRETKAPQELLDLLKALSRMPTLWTPDTLRAKSFTSDIKNGRTGKCLQQESQSWKE 715
Query: 4115 TQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLP 3936
QT+ D+ + +SVIHGAGGSGKS ALQ LLR +P+LPI+V+LPTNELR+DWL KLP
Sbjct: 716 AQTLKVDHNIRPVPLSVIHGAGGSGKSAALQDLLRDHPELPIQVILPTNELRMDWLSKLP 775
Query: 3935 HNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHH 3756
N PE FRTFE+A++ + +P +I DDYGKLPQGY+EAFA+TH ++EL++LTGD +QS HH
Sbjct: 776 RNRPENFRTFEKAYLQTNAPSIIMDDYGKLPQGYVEAFAVTHPNVELIVLTGDNKQSVHH 835
Query: 3755 EANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQP 3576
E NE+A+I++L P+T IFS+ SRYYINATHRN+K LAN LGVYS N+ LK+T+GFQP
Sbjct: 836 ETNEQAMIAQLEPSTQIFSQFSRYYINATHRNAKKLANMLGVYSDNNKELKITHGFQPIK 895
Query: 3575 GLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAV 3396
+HLLVPSL+KKAAF++AGHK STYAGCQGITA K+QILLD++T MC++EVLYTALSRAV
Sbjct: 896 DIHLLVPSLIKKAAFSEAGHKTSTYAGCQGITARKLQILLDSNTPMCSQEVLYTALSRAV 955
Query: 3395 DSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVE 3216
DSIHF+N+ SS FWEKLEATPYLKTFLS+VREDKI E+ PVE
Sbjct: 956 DSIHFINTAPTSSNFWEKLEATPYLKTFLSMVREDKILEWRPKEPEPAKEEPPKTHFPVE 1015
Query: 3215 DKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKAR 3036
+ T L++F E L+ K EREIF E+HGHTNCVQ D+ Q SHQQAKDEALLWETIKAR
Sbjct: 1016 NGNTILEEFTEELAQKHEREIFNESHGHTNCVQTDNKIIQTLSHQQAKDEALLWETIKAR 1075
Query: 3035 LTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKS 2856
L IS + N EF KKD+GDILW NY +AM LP++ F E+LW A E+Q+TYL KS
Sbjct: 1076 LVISHKQHNWTEFVKKKDIGDILWLNYKRAMHLPEDPIPF-EELWELAAREIQHTYLSKS 1134
Query: 2855 ISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTM 2676
+K GERRQSPDF E ILIFLKSQWVKKMEKLGA KIKPGQTIASFQQ AVMLYGTM
Sbjct: 1135 TQMLKNGERRQSPDFGEKDILIFLKSQWVKKMEKLGAPKIKPGQTIASFQQSAVMLYGTM 1194
Query: 2675 ARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQF 2496
ARYMRR RD P +IMINCE+TP DLS W LNYW+F KPSYANDFTAFDQSQDGAMLQF
Sbjct: 1195 ARYMRRIRDIYMPEHIMINCERTPTDLSYWALNYWNFDKPSYANDFTAFDQSQDGAMLQF 1254
Query: 2495 EILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFE 2316
EILKAK+ N+PEWV+EGYLDIKL +IFLGTLSIMRLTGE TFDANTECNIAYTHTRF+
Sbjct: 1255 EILKAKHHNIPEWVLEGYLDIKLDSRIFLGTLSIMRLTGEYQTFDANTECNIAYTHTRFD 1314
Query: 2315 IPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQ-----AKPAYTPQERGQWAEFCGY 2151
IPEG AQ D A+ C EKPSF L+++ ++L+ KP Q G+WAEFCGY
Sbjct: 1315 IPEGVAQ-----DSAMDATCLEKPSFKLIESELSLKLYAGDCKPCLKAQIPGEWAEFCGY 1369
Query: 2150 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 1971
LITPKGLIKDPLKL AS LAK + K + N + NY+ D KLAY LGDDL +LL+P
Sbjct: 1370 LITPKGLIKDPLKLAASFRLAKERGKR----ELDNCLENYARDMKLAYDLGDDLLELLTP 1425
Query: 1970 RQAHLHQVTVRDLVKFGGSPFL 1905
QA LHQVTVRD++K G S L
Sbjct: 1426 EQAQLHQVTVRDMIKLGASDIL 1447
>gb|ADE10202.1| viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1483 bits (3838), Expect = 0.0
Identities = 786/1401 (56%), Positives = 947/1401 (67%), Gaps = 17/1401 (1%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MS V V + ++DPSLKAVIQ+EAY++++ L +H NP+A E A+ LE GI S P
Sbjct: 1 MSRVSQVLASISDPSLKAVIQEEAYKSIRTTLQAAKHLNPYAHPSETAEFLERQGIISDP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YA+ HTHAAAK +E DLY VSHY+PKENPV+FLFMK AKL++F RG GD F+N
Sbjct: 61 YAVAAHTHAAAKCLELDLYASVSHYMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTLF 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKD RYP DT+ S + I T +AFMGDTLHFL P+F+T LF SP L TLYAT+VLPP
Sbjct: 121 EPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITA
Sbjct: 181 EAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QR+ETK ANHLF+F RG TP R+F Y T+P IFLP +N RTP +KT + QMF
Sbjct: 241 QRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDV 4986
Y+KS+K+ E D++AKFRQL T +LQ P LL + E S +
Sbjct: 301 LYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCI 356
Query: 4985 LSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRG 4815
LSG+ ++RLL+PL ++++ Q GR FV+L+KAL+W IT V T +T R
Sbjct: 357 LSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERF 416
Query: 4814 PPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASH---TSL 4644
G + + P + +RA Y + T D + L ++ T+L
Sbjct: 417 LGGSFKALPLGNELGPGLPEELRAEVARYYGNALLTGLDETDPKAEAFALLCNNPHGTTL 476
Query: 4643 KVGHADLSTEQ-------LRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKA 4485
H E L+ H GGP EQ++E +
Sbjct: 477 FAPHTTAPEEDITHRVLALKVPHGSPPPGFGGP--SSAAQPEQEKEVARPATPPEQEKQP 534
Query: 4484 SAALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRD 4308
+G PV++ LPW W P L LGF+A EIQ P VIMPIT+ V
Sbjct: 535 -----EGQKMITRPVSTLEDALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSG 589
Query: 4307 LPKATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQ 4128
LP + + H V+ L L+R PT W P RAR++TSD+KN RTG L +E+
Sbjct: 590 LPISQIQGH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESA 643
Query: 4127 TWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWL 3948
TWKETQT+ + + + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+
Sbjct: 644 TWKETQTLKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWM 703
Query: 3947 KKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQ 3768
K P PE+ +T+ERAF SP+V+FDDYGKLP GYIEA+ +ELVILTGD RQ
Sbjct: 704 AKAPKVRPEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQ 763
Query: 3767 STHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGF 3588
STHHE NE+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS K+T GF
Sbjct: 764 STHHENNEQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGF 823
Query: 3587 QPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTAL 3408
QP LHLLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTAL
Sbjct: 824 QPIKDLHLLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTAL 883
Query: 3407 SRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXX 3228
SRAV SIHF+N+ S+FWEKLEATPYLK FLS VRE+ IA
Sbjct: 884 SRAVHSIHFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPNADPRPDPEPKTH 943
Query: 3227 XPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWET 3048
PVE+ + L + E + +KFEREIFTE GHTNCVQ +P QLF HQQAKDEALLWET
Sbjct: 944 FPVENTSCALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWET 1003
Query: 3047 IKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTY 2868
IKARLTIS+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTY
Sbjct: 1004 IKARLTISSPEANWEEFYRKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTY 1063
Query: 2867 LKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVML 2688
L K ++ +K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVML
Sbjct: 1064 LSKPMNMLKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVML 1123
Query: 2687 YGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGA 2508
YGTMARYMRRFR+ L PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQDGA
Sbjct: 1124 YGTMARYMRRFREVLGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDGA 1183
Query: 2507 MLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTH 2328
MLQFEILKAK+FN+PE +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTH
Sbjct: 1184 MLQFEILKAKHFNIPEEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTH 1243
Query: 2327 TRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYL 2148
TRF+IP GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYL
Sbjct: 1244 TRFDIPPGTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYL 1303
Query: 2147 ITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPR 1968
ITPKGLIKDP KL ASL+L +A +G K + NY D LAY+L D L ++LSP
Sbjct: 1304 ITPKGLIKDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPE 1361
Query: 1967 QAHLHQVTVRDLVKFGGSPFL 1905
QA LHQ TVR LVK +L
Sbjct: 1362 QAELHQETVRTLVKLTKGTYL 1382
>ref|YP_224084.1| viral replicase [Hydrangea ringspot virus] gi|56792005|gb|AAW30448.1|
viral replicase [Hydrangea ringspot virus]
Length = 1386
Score = 1475 bits (3818), Expect = 0.0
Identities = 780/1394 (55%), Positives = 939/1394 (67%), Gaps = 10/1394 (0%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MS V V + ++DPSLKAVIQ+EAY++++ L +H NP+A E A+ LE GI S P
Sbjct: 1 MSRVSQVLASISDPSLKAVIQEEAYKSIRTTLQAAKHLNPYAHPSETAEFLERQGIISDP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YA+ HTHAAAK +E DLY VSHY+PKENPV+FLFMK AKL++F RG GD F+N
Sbjct: 61 YAVAAHTHAAAKCLELDLYASVSHYMPKENPVTFLFMKRAKLQYFRRGTQQGDVFVNTLF 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKD RYP DT+ S + I T +AFMGDTLHFL P+F+T LF SP L TLYAT+VLPP
Sbjct: 121 EPKDAARYPLDTICSAIPPIQTQMAFMGDTLHFLEPAFLTDLFDRSPHLNTLYATMVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EA ++LRSL+P +YTL Y +D F+Y+PGGHAGASY H Y QL+WL VGH+ + + ITA
Sbjct: 181 EAKHKLRSLHPLVYTLQYLKDHFIYLPGGHAGASYCHTYSQLQWLDVGHIVSPSGNCITA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QR+ETK ANHLF+F RG TP R+F Y T+P IFLP +N RTP +KT + QMF
Sbjct: 241 QRIETKAANHLFVFIRGRLNTPPMRSFAPMRAYCTLPAIFLPTEFNSRTPYTKTFLQQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEI---TLLVNYFEFTASLDSHTCFEDV 4986
Y+KS+K+ E D++AKFRQL T +LQ P LL + E S +
Sbjct: 301 LYLKSIKKPTETDLYAKFRQLTKTDDLQELDPKRSHYGELLPPHLEARFS----HLLRCI 356
Query: 4985 LSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPV---RTVNTRLRG 4815
LSG+ ++RLL+PL ++++ Q GR FV+L+KAL+W IT V T +T R
Sbjct: 357 LSGSALRRLLKPLICWMEKMRQTIFGREEFVRLMKALEWTDITFTEQVMAYHTGSTWERF 416
Query: 4814 PPGFHNPFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASH---TSL 4644
G + + P + +RA Y + T D + L ++ T+L
Sbjct: 417 LGGSFKALPLGNELGPGLPEELRAEVARYYGNALLTGLDETDPKAEAFALLCNNPHGTTL 476
Query: 4643 KVGHADLSTEQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQG 4464
H E + G P P + +G
Sbjct: 477 FAPHTTAPEEDITHRVLALKVPRGSPPPGFEGPSSSAQPEQEKEVAKPATPPEQEKQPEG 536
Query: 4463 DHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPKATLP 4287
PV++ LPW W P L LGF+A EIQ P VIMPIT+ V LP + +
Sbjct: 537 QKMITRPVSALENALPWNKWTPILRGLGFQAREIQRSPHDNSVIMPITNIVSGLPISQIQ 596
Query: 4286 EHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQT 4107
H V+ L L+R PT W P RAR++TSD+KN RTG L +E+ TWKETQT
Sbjct: 597 GH------ELVMGVLEKLSRKPTPWTPCPLRARSYTSDIKNHRTGALLLKESATWKETQT 650
Query: 4106 MLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNP 3927
+ + + + +SVIHG GGSGKS A Q LLRQ+PD+ ++VVLPTNELRLDW+ K P
Sbjct: 651 LKAERLEKTVGLSVIHGCGGSGKSFAFQELLRQHPDVDLQVVLPTNELRLDWMAKAPKVR 710
Query: 3926 PEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQSTHHEAN 3747
PE+ +T+ERAF SP+V+FDDYGKLP GYIEA+ +ELVILTGD RQSTHHE N
Sbjct: 711 PEKIKTYERAFTGVSSPVVLFDDYGKLPAGYIEAYVAVQTRVELVILTGDARQSTHHENN 770
Query: 3746 EEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLH 3567
E+A+IS+LAPAT +F L RYYINATHRN + LANKL VYS K+T GFQP LH
Sbjct: 771 EQAMISQLAPATEVFQPLCRYYINATHRNKRDLANKLEVYSEKEGETKITMGFQPIKDLH 830
Query: 3566 LLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTALSRAVDSI 3387
LLVPSL+KK+A+ + GHKVSTYAGCQGITAPK+QILLDNDT MC+KEVLYTALSRAV SI
Sbjct: 831 LLVPSLLKKSAYGEMGHKVSTYAGCQGITAPKIQILLDNDTVMCSKEVLYTALSRAVHSI 890
Query: 3386 HFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKT 3207
HF+N+ S+FWEKLEATPYLK FLS VRE+ IA PVE+ +
Sbjct: 891 HFINTGPTHSSFWEKLEATPYLKAFLSTVREEAIAAHQLPSADPRPDPEPKTHFPVENTS 950
Query: 3206 TTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWETIKARLTI 3027
L + E + +KFEREIFTE GHTNCVQ +P QLF HQQAKDEALLWETIKARLTI
Sbjct: 951 CALGAYMEKVPEKFEREIFTEDRGHTNCVQTQNPLVQLFPHQQAKDEALLWETIKARLTI 1010
Query: 3026 STPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQ 2847
S+PEAN EEF KKD+GDILW +Y KAM LP+E FSEDLW A EVQNTYL K ++
Sbjct: 1011 SSPEANWEEFYKKKDIGDILWLHYKKAMTLPEEPLPFSEDLWRLSAAEVQNTYLSKPMNM 1070
Query: 2846 IKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARY 2667
+K GERRQSPDF +HQIL+FLKSQWVKKMEKLG KIK GQTIASFQQHAVMLYGTMARY
Sbjct: 1071 LKNGERRQSPDFEKHQILLFLKSQWVKKMEKLGGPKIKAGQTIASFQQHAVMLYGTMARY 1130
Query: 2666 MRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEIL 2487
MRRFR+AL PN+I INCE TP+DLSR++ NYWDF SYANDFTAFDQSQD AMLQFEIL
Sbjct: 1131 MRRFREALGPNHIKINCEATPKDLSRFIQNYWDFKPASYANDFTAFDQSQDAAMLQFEIL 1190
Query: 2486 KAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPE 2307
KAK+FN+P +I+GYLDIKL+ KIFLG L IMRLTGEGPTFDANTECNIAYTHTRF+IP
Sbjct: 1191 KAKHFNIPGEIIQGYLDIKLNAKIFLGVLGIMRLTGEGPTFDANTECNIAYTHTRFDIPP 1250
Query: 2306 GTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLI 2127
GTAQ+YAGDD AIA V PE+PSF L+ +AL+AKP Y PQ G WAEFCGYLITPKGLI
Sbjct: 1251 GTAQLYAGDDSAIACVPPERPSFKLIAKSLALEAKPVYAPQVAGAWAEFCGYLITPKGLI 1310
Query: 2126 KDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQV 1947
KDP KL ASL+L +A +G K + NY D LAY+L D L ++LSP QA LHQ
Sbjct: 1311 KDPAKLFASLKLLQA--TSGSKKELVEAAGNYERDVGLAYALKDSLYEILSPEQAELHQE 1368
Query: 1946 TVRDLVKFGGSPFL 1905
TVR LVK +L
Sbjct: 1369 TVRTLVKLTKGAYL 1382
>gb|AGW45386.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 711
Score = 1327 bits (3433), Expect = 0.0
Identities = 648/708 (91%), Positives = 675/708 (95%)
Frame = -2
Query: 4028 LQTLLRQNPDLPIEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGK 3849
LQTLLRQ+P LP+EVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCS+ P+VIFDDYGK
Sbjct: 1 LQTLLRQHPSLPVEVVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSRCPVVIFDDYGK 60
Query: 3848 LPQGYIEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINAT 3669
LPQGY+EAFAMTHASLELVILTGDPRQSTHHEANEEALISKL PATTIFSELSRYYINAT
Sbjct: 61 LPQGYLEAFAMTHASLELVILTGDPRQSTHHEANEEALISKLPPATTIFSELSRYYINAT 120
Query: 3668 HRNSKFLANKLGVYSSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQ 3489
HRNSKFLANKLGVYSSNSCPLKVTYG QPQPGLHLLVPSL+KKAAFTDAGHKVSTYAGCQ
Sbjct: 121 HRNSKFLANKLGVYSSNSCPLKVTYGSQPQPGLHLLVPSLMKKAAFTDAGHKVSTYAGCQ 180
Query: 3488 GITAPKVQILLDNDTTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFL 3309
GITAP+VQILLDNDTTMCTKEVLYTALSRAVDSIHF+NSNAQSSAFWEKLEATPYLKTFL
Sbjct: 181 GITAPRVQILLDNDTTMCTKEVLYTALSRAVDSIHFINSNAQSSAFWEKLEATPYLKTFL 240
Query: 3308 SLVREDKIAEFSXXXXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHT 3129
SLVRED++AEFS PVED TTTLDDF+E L DKF+REIF +AHGHT
Sbjct: 241 SLVREDRVAEFSASPADPTPVAPPCTHFPVEDGTTTLDDFREELQDKFDREIFNQAHGHT 300
Query: 3128 NCVQGDDPTTQLFSHQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHK 2949
NCVQ D+PTTQLF+HQQAKDEALLWETI ARLTIS+PEANL EFRAKKDLGDILW NY K
Sbjct: 301 NCVQTDNPTTQLFAHQQAKDEALLWETINARLTISSPEANLAEFRAKKDLGDILWENYRK 360
Query: 2948 AMKLPKEQPEFSEDLWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWV 2769
AMKLP EQP+FSEDLWTRCAEEVQNTYLKKS++QIKGG+RRQSPDFHEHQILIFLKSQWV
Sbjct: 361 AMKLPNEQPDFSEDLWTRCAEEVQNTYLKKSVAQIKGGDRRQSPDFHEHQILIFLKSQWV 420
Query: 2768 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSR 2589
KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDAL PNNIMINCEKTPQDLSR
Sbjct: 421 KKMEKLGAKKIKPGQTIASFQQHAVMLYGTMARYMRRFRDALRPNNIMINCEKTPQDLSR 480
Query: 2588 WVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 2409
WVLN+WDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL
Sbjct: 481 WVLNHWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFL 540
Query: 2408 GTLSIMRLTGEGPTFDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALL 2229
GTL+IMRLTGEGPTFDANTECNIAYTHTRF+IPEG AQIYAGDDCAI+QVCPEKPSF+LL
Sbjct: 541 GTLTIMRLTGEGPTFDANTECNIAYTHTRFDIPEGAAQIYAGDDCAISQVCPEKPSFSLL 600
Query: 2228 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIS 2049
KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAI+
Sbjct: 601 KNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAIT 660
Query: 2048 NVIANYSLDAKLAYSLGDDLQDLLSPRQAHLHQVTVRDLVKFGGSPFL 1905
NV+ANYSLDAKLAYSLGDDLQDLLSP QAHLHQVTVRDLVKFGGSPFL
Sbjct: 661 NVVANYSLDAKLAYSLGDDLQDLLSPHQAHLHQVTVRDLVKFGGSPFL 708
>dbj|BAB83122.1| RNA dependent RNA polymerase [Potato virus X]
Length = 1456
Score = 1243 bits (3217), Expect = 0.0
Identities = 685/1457 (47%), Positives = 899/1457 (61%), Gaps = 78/1457 (5%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
M+ VR V+ TD + K +IQDEAYR ++ + + + +NP+AQT EAA+ LE GI ++P
Sbjct: 1 MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTVEAANDLEGFGIATNP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
Y+I HTHAAAK IE+ L EV+ LP+E PV+F+F+KP KL + R P D F N +
Sbjct: 61 YSIELHTHAAAKTIENKLLEVLGSILPQE-PVTFMFLKPRKLNYMRRNPRIKDIFHNVAI 119
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EP+DV RYP++T+I +L I T+ A++ DTLHFL PS++ F + PKLQTLYATLVLP
Sbjct: 120 EPRDVARYPKETIIDKLTEITTDTAYISDTLHFLDPSYIVETFQNCPKLQTLYATLVLPV 179
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVG------------ 5373
EA +++ S +P IY+L Y DGF YIPG H G +Y H++ L+WL VG
Sbjct: 180 EAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQWLKVGKIKWRDPKDGFL 239
Query: 5372 -HLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 5208
HL + T+T Q E+ ANHL+ +RG+ LTPE RTF + YV P IFLP+
Sbjct: 240 GHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPK 299
Query: 5207 RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 5028
+NC+ PI K MMQ+F Y+++VK AK DI+AK RQLI + +L Y E+ LV+Y E
Sbjct: 300 VHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKSSDLDKYSAVELVYLVSYME 359
Query: 5027 FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 4848
F A L + TCF D LSG L+ + L P+R+ IQ G + KL+KA+D+ P+ F
Sbjct: 360 FLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDFSF 419
Query: 4847 PVRTVNTR---LRGPPGFH--------------------NPFTK--PHPVNPD-DADTMR 4746
V T + R L+ F + FT+ + VN + D +R
Sbjct: 420 KVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDLLDCFTRMPSYAVNAEEDLAAIR 479
Query: 4745 AFREFSYTSETSTPTTIADSLEGSAENLASHT----SLKVGHADLST--------EQLRA 4602
E E P + AE + S +V H + E +RA
Sbjct: 480 KTPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHRKHSREVKHQAVKKAKRLAEIQESMRA 539
Query: 4601 LHELGNTRLGGPL--------LPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQV 4446
E G+ + G + LP + Q+ AS + +QV
Sbjct: 540 EGEAGSNEMSGGMGAIPSNAELPSTSDARQELILPVNKPVPARWEDASLT-DSSVEEEQV 598
Query: 4445 PVNSDPAT----------LPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITD-VRDLPK 4299
+ A LPW W+P+LNA+GF+ALEIQ D S G +IMPIT+ V L K
Sbjct: 599 KLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALEIQRDRS-GTIIMPITEMVSGLEK 657
Query: 4298 ATLPEHWNEPGLSKVLTT-LRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTW 4122
PE G K L L ++NR P + D RAR + SDVKN R G + +W
Sbjct: 658 EDFPE-----GTPKELARELLAMNRSPATIPLDLLRARDYGSDVKNKRIGAITKTQATSW 712
Query: 4121 KETQTMLTDNVTAN-LAISVIHGAGGSGKSQALQTLLRQ-NPDLPIEVVLPTNELRLDWL 3948
E T +++ +A VIHGAGGSGKS A+Q LR+ I VVLPTNELRLDW
Sbjct: 713 GEYLTGKIESLNERKVATCVIHGAGGSGKSHAIQKALREIGKGSDITVVLPTNELRLDWS 772
Query: 3947 KKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQ 3768
KK+P+ P F+T+E+A + IVIFDDY KLP GYIEA ++ ++LVILTGD RQ
Sbjct: 773 KKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIEALICFYSKIKLVILTGDSRQ 832
Query: 3767 STHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGF 3588
S +HE E+A I L PAT FS+ RYY+NATHRN K LAN LGVYS + +++
Sbjct: 833 SVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKDLANMLGVYSERTGVTEISMSA 892
Query: 3587 QPQPGLHLLVPSLVKKAAFTDAGHKVS-TYAGCQGITAPKVQILLDNDTTMCTKEVLYTA 3411
+ G+ LVPS K+ + G + TYAGCQG+T PKVQI+LD++T +C+ V+YTA
Sbjct: 893 EFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTKPKVQIVLDHNTQVCSANVMYTA 952
Query: 3410 LSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXX 3231
LSRA D IHFVN++A SSAFWEKL++TPYLKTFLS+VRE + E+
Sbjct: 953 LSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVVREQALKEYEPAEAEPIREPEPQT 1012
Query: 3230 XXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWE 3051
VE++ + L+++KE L +KF+REI +E+HGH+NCVQ ++ T QLFSHQQAKDE LLW
Sbjct: 1013 HMRVENEESVLEEYKEELLEKFDREIHSESHGHSNCVQTENTTIQLFSHQQAKDETLLWA 1072
Query: 3050 TIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNT 2871
TI ARL S E N EF +KKD+GD+L+ NY KAM LPKE+ FS+++W CA EVQ+
Sbjct: 1073 TIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSK 1132
Query: 2870 YLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVM 2691
YL KS + G RQSPDF E++I++FLKSQWV K+EKLG KIKPGQTIA+F Q VM
Sbjct: 1133 YLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVM 1192
Query: 2690 LYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDG 2511
L+GTMARYMR FR A P + INCE TP+D+S W LN WDFS+PS AND+TAFDQSQDG
Sbjct: 1193 LFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALNNWDFSRPSLANDYTAFDQSQDG 1252
Query: 2510 AMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYT 2331
AMLQFE+LKAK+ +PE +I+ Y+DIK + +IFLGTLSIMRLTGEGPTFDANTECNIAYT
Sbjct: 1253 AMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQIFLGTLSIMRLTGEGPTFDANTECNIAYT 1312
Query: 2330 HTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGY 2151
HT+F+IP GTAQ+YAGDD A+ V K SF L++++ L++KP T Q++G W EFCG+
Sbjct: 1313 HTKFDIPAGTAQVYAGDDSALDCVPEVKHSFHRLEDKLLLKSKPVITQQKKGSWPEFCGW 1372
Query: 2150 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 1971
LITPKG++KDP+KLH SL+LA+A K + +Y +D AY D L DL
Sbjct: 1373 LITPKGVMKDPIKLHVSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDLFDE 1426
Query: 1970 RQAHLHQVTVRDLVKFG 1920
+Q H +T R L+K G
Sbjct: 1427 KQCQAHTLTCRTLIKSG 1443
>sp|P09395.1|RDRP_PVX RecName: Full=RNA replication protein; AltName: Full=165 kDa protein;
AltName: Full=ORF1 protein; Includes: RecName:
Full=RNA-directed RNA polymerase; Includes: RecName:
Full=Helicase gi|309911|gb|AAA47167.1| RNA-replicating
protein [Potato virus X]
Length = 1456
Score = 1230 bits (3182), Expect = 0.0
Identities = 685/1457 (47%), Positives = 897/1457 (61%), Gaps = 78/1457 (5%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
M+ VR V+ TD + K +IQDEAYR ++ + + + +NP+AQT EAA+ LE GI ++P
Sbjct: 1 MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPYAQTVEAANDLEGFGIATNP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
Y+I HTHAAAK IE+ L EV+ LP+E PV+F+F+KP KL + R P D F N +
Sbjct: 61 YSIELHTHAAAKTIENKLLEVLGSILPQE-PVTFMFLKPRKLNYMRRNPRIKDIFHNVAI 119
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EP+DV RYP++T+I +L I T+ A++GDTLHFL PS++ F + PKLQTLYATLVLP
Sbjct: 120 EPRDVARYPKETIIDKLTEITTDTAYIGDTLHFLDPSYIVETFQNCPKLQTLYATLVLPV 179
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV------------- 5376
EA +++ S +P IY+L Y DGF YIPG H G +Y H++ L+WL V
Sbjct: 180 EAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFSHLQWLKVGKIKWRDPKDSFL 239
Query: 5375 GHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 5208
GHL + T+T Q E+ ANHL+ +RG+ LTPE RTF + YV P IFLP+
Sbjct: 240 GHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPK 299
Query: 5207 RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 5028
+NC+ PI K MMQ+F Y+++VK AK DI+AK RQLI + +L Y E+ LV+Y E
Sbjct: 300 VHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKSSDLDKYSAVELVYLVSYME 359
Query: 5027 FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 4848
F A L + TCF D LSG L+ + L P+R+ IQ G + KL+KA+D+ P+ F
Sbjct: 360 FLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDFSF 419
Query: 4847 PVRTVNTR---LRGPPGFH--------------------NPFTK--PHPVN-PDDADTMR 4746
V T + R L+ F + FT+ + VN +D +R
Sbjct: 420 KVETWDFRFHPLQAWKAFRPREVSDVEEMENLFSDGDLLDCFTRMPAYAVNAEEDLAAIR 479
Query: 4745 AFREFSYTSETSTPTTIADSLEGSAENLASHT----SLKVGHADLS--------TEQLRA 4602
E E P + AE S S +V H E +RA
Sbjct: 480 KTPEMDAGQEVKEPAGDRNQYSNPAETFLSKLHRKHSREVKHQAAKKAKRLAEIQESMRA 539
Query: 4601 LHELGNTRLGGPL--------LPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQV 4446
E + + G + LP + Q+ AS + +QV
Sbjct: 540 EGEAESNEMSGGMGAIPSNAELPSTSGARQELTLPTTKPVPARWEDASFT-DSSVEEEQV 598
Query: 4445 PVNS----DPATLPWVAWLP------KLNALGFEALEIQTDPSTGEVIMPITD-VRDLPK 4299
+ + AT + LP +LNA+GF+ALEIQ D S G +IMPIT+ V L K
Sbjct: 599 KLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALEIQRDRS-GTMIMPITEMVSGLEK 657
Query: 4298 ATLPEHWNEPGLSKVLT-TLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTW 4122
PE G K L L ++NR P + D RAR + SDVKN R G + +W
Sbjct: 658 EDFPE-----GTPKELARELLAMNRSPATIPLDLLRARDYGSDVKNKRIGAITKTQAASW 712
Query: 4121 KETQTMLTDNVT-ANLAISVIHGAGGSGKSQALQTLLRQ-NPDLPIEVVLPTNELRLDWL 3948
E T +++T +A VIHGAGGSGKS A+Q LR+ I VVLPTNELRLDW
Sbjct: 713 GEYLTGKIESLTERKVAACVIHGAGGSGKSHAIQKALREIGKGSDITVVLPTNELRLDWS 772
Query: 3947 KKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQ 3768
KK+P+ P F+T+E+A + IVIFDDY KLP GYIEA ++ ++LVILTGD RQ
Sbjct: 773 KKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIEALICFYSKIKLVILTGDSRQ 832
Query: 3767 STHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGF 3588
S +HE E+A I L PAT FS+ RYY+NATHRN K LAN LGVYS + +++
Sbjct: 833 SVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKDLANMLGVYSERTGVTEISMSA 892
Query: 3587 QPQPGLHLLVPSLVKKAAFTDAG-HKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTA 3411
+ G+ LVPS K+ + G + TYAGCQG+T PKVQI+LD++T +C+ V+YTA
Sbjct: 893 EFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTKPKVQIVLDHNTQVCSANVMYTA 952
Query: 3410 LSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXX 3231
LSRA D IHFVN++A SSAFWEKL++TPYLKTFLS+VRE + E+
Sbjct: 953 LSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVVREQALKEYEPAEAEPIREPEPQT 1012
Query: 3230 XXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWE 3051
VE++ + L+++KE L +KF+REI +E+HGH+NCVQ +D T QLFSHQQAKDE LLW
Sbjct: 1013 HMCVENEESVLEEYKEELLEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWA 1072
Query: 3050 TIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNT 2871
TI ARL S E N EF +KKD+GD+L+ NY KAM LPKE+ FS+++W CA EVQ+
Sbjct: 1073 TIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSK 1132
Query: 2870 YLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVM 2691
YL KS + G RQSPDF E++I++FLKSQWV K+EKLG KIKPGQTIA+F Q VM
Sbjct: 1133 YLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVM 1192
Query: 2690 LYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDG 2511
L+GTMARYMR FR A P + INCE TP+D+S W LN W+FS+PS AND+TAFDQSQDG
Sbjct: 1193 LFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQDG 1252
Query: 2510 AMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYT 2331
AMLQFE+LKAK+ +PE +I+ Y+DIK + IFLGTLSIMRLTGEGPTFDANTECNIAYT
Sbjct: 1253 AMLQFEVLKAKHHCIPEEIIQAYIDIKTNAHIFLGTLSIMRLTGEGPTFDANTECNIAYT 1312
Query: 2330 HTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGY 2151
HT+F+IP GTAQ+YAGDD A+ V K SF L++++ L++KP T Q++G W EFCG+
Sbjct: 1313 HTKFDIPAGTAQVYAGDDSALDCVPEVKHSFHRLEDKLLLKSKPVITQQKKGSWPEFCGW 1372
Query: 2150 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 1971
LITPKG++KDP+KLH SL+LA+A K + +Y +D AY D L DL
Sbjct: 1373 LITPKGVMKDPIKLHVSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDLFDE 1426
Query: 1970 RQAHLHQVTVRDLVKFG 1920
+Q H +T R L+K G
Sbjct: 1427 KQCQAHTLTCRTLIKSG 1443
>dbj|BAJ12046.1| RNA dependent RNA polymerase [Potato virus X]
Length = 1456
Score = 1222 bits (3161), Expect = 0.0
Identities = 682/1457 (46%), Positives = 897/1457 (61%), Gaps = 78/1457 (5%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
M+ VR V+ TD + K +IQDEAYR ++ + + + +NP AQT EAA+ LE GI ++P
Sbjct: 1 MAKVREVYQSFTDSTTKTLIQDEAYRNIRPIMEKHKLANPHAQTVEAANDLEGFGIATNP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
Y+I HTHAAAK IE+ L EV+ LP+E PV+F+F+KP KL + R P F N +
Sbjct: 61 YSIELHTHAAAKTIENKLLEVLGSILPQE-PVTFMFLKPRKLNYMRRNPRIKAIFHNVAI 119
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EP+DV RYP++T+I +L I T+ A++ +TLHFL PS++ F + PKLQTLYATLVLP
Sbjct: 120 EPRDVARYPKETIIDKLTEITTDTAYISNTLHFLDPSYIVETFQNCPKLQTLYATLVLPV 179
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTV------------- 5376
EA +++ S +P IY+L Y DGF YIPG H G +Y H++ L+WL V
Sbjct: 180 EAAFKMESTHPNIYSLKYFGDGFQYIPGNHGGGAYHHEFAHLQWLKVGKIKWRDPKDSFL 239
Query: 5375 GHLTAANQP----TITAQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPE 5208
GHL + T+T Q E+ ANHL+ +RG+ LTPE RTF + YV P IFLP+
Sbjct: 240 GHLNYTTEQVEMHTVTVQLQESFAANHLYCIRRGDLLTPEVRTFGQPDRYVIPPQIFLPK 299
Query: 5207 RYNCRTPISKTIMMQMFFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFE 5028
+NC+ PI K MMQ+F Y+++VK AK DI+AK RQLI + +L Y E+ LV+Y E
Sbjct: 300 VHNCKKPILKKTMMQLFLYVRTVKVAKNCDIFAKVRQLIKSSDLDKYSAVELVYLVSYME 359
Query: 5027 FTASLDSHTCFEDVLSGNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEF 4848
F A L + TCF D LSG L+ + L P+R+ IQ G + KL+KA+D+ P+ F
Sbjct: 360 FLADLQATTCFSDTLSGGLLTKTLAPVRAWIQEKKMQLFGLEDYAKLVKAVDFHPVDFSF 419
Query: 4847 PVRTVNTR---LRGPPGFH--------------------NPFTK--PHPVN-PDDADTMR 4746
V T + R L+ F + FT+ + VN +D +R
Sbjct: 420 KVETWDFRFHPLQAWKAFRPREVSDVEEMESLFSDGDLLDCFTRMPAYAVNAEEDLAAIR 479
Query: 4745 AFREFSYTSETSTPTTIADSLEGSAE----NLASHTSLKVGHADLS--------TEQLRA 4602
E E P + AE L S +V H + E +RA
Sbjct: 480 KAPEMDVGQEVKEPAGDRNQYSNPAETFLNKLHRKHSREVKHQAVKKAKRLAEIQESMRA 539
Query: 4601 LHELGNTRLGGPL--------LPKITPEEQDREXXXXXXXXXXPTKASAALNQGDHTDQV 4446
E + + G + LP + Q+ AS + +QV
Sbjct: 540 EGEAESNEMSGGMGAIPSNAELPSTSDARQELTLPTTIPVPARWEDASFT-DSSVEEEQV 598
Query: 4445 PVNS----DPATLPWVAWLP------KLNALGFEALEIQTDPSTGEVIMPITD-VRDLPK 4299
+ + AT + LP +LNA+GF+ALEIQ D S G +IMPIT+ V L K
Sbjct: 599 KLPGKEAVETATQQVIEGLPWKHWIPQLNAVGFKALEIQRDRS-GTMIMPITEMVSGLEK 657
Query: 4298 ATLPEHWNEPGLSKVLT-TLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTW 4122
PE G K L L ++NR P + D RAR + SDVKN R G + +W
Sbjct: 658 EDFPE-----GTPKELARELLAMNRSPATIPLDLLRARDYGSDVKNKRIGAITKTQAASW 712
Query: 4121 KETQTMLTDNVT-ANLAISVIHGAGGSGKSQALQTLLRQ-NPDLPIEVVLPTNELRLDWL 3948
E T +++T +A VIHGAGGSGKS A+Q LR+ I VVLPTNELRLDW
Sbjct: 713 GEYLTGKIESLTERKVATCVIHGAGGSGKSHAIQKALREIGKGSDITVVLPTNELRLDWS 772
Query: 3947 KKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGDPRQ 3768
KK+P+ P F+T+E+A + IVIFDDY KLP GYIEA ++ ++LVILTGD RQ
Sbjct: 773 KKVPNTEPYMFKTYEKALIGGTGSIVIFDDYSKLPPGYIEALICFYSKIKLVILTGDSRQ 832
Query: 3767 STHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVTYGF 3588
S +HE E+A I L PAT FS+ RYY+NATHRN K LAN LGVYS + +++
Sbjct: 833 SVYHETAEDASIRHLGPATEYFSKYCRYYLNATHRNKKDLANMLGVYSERTGVTEISMSA 892
Query: 3587 QPQPGLHLLVPSLVKKAAFTDAG-HKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLYTA 3411
+ G+ LVPS K+ + G + TYAGCQG+T PKVQI+LD++T +C+ V+YTA
Sbjct: 893 EFLEGIPTLVPSDEKRRLYMGTGRNDTFTYAGCQGLTKPKVQIVLDHNTQVCSANVMYTA 952
Query: 3410 LSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXXXX 3231
LSRA D IHFVN++A SSAFWEKL++TPYLKTFLS+VRE + E+
Sbjct: 953 LSRATDRIHFVNTSANSSAFWEKLDSTPYLKTFLSVVREQALREYEPAEAEPIREPEPQT 1012
Query: 3230 XXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALLWE 3051
VE++ + L+++KE L +KF+REI +E+HGH+NCVQ +D T QLFSHQQAKDE LLW
Sbjct: 1013 HMCVENEESVLEEYKEELLEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWA 1072
Query: 3050 TIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQNT 2871
TI ARL S E N EF +KKD+GD+L+ NY KAM LPKE+ FS+++W CA EVQ+
Sbjct: 1073 TIDARLKTSNQETNFREFLSKKDIGDVLFLNYQKAMGLPKERIPFSQEVWEACAHEVQSK 1132
Query: 2870 YLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHAVM 2691
YL KS + G RQSPDF E++I++FLKSQWV K+EKLG KIKPGQTIA+F Q VM
Sbjct: 1133 YLSKSKCNLINGTVRQSPDFDENKIMVFLKSQWVTKVEKLGLPKIKPGQTIAAFYQQTVM 1192
Query: 2690 LYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDG 2511
L+GTMARYMR FR A P + INCE TP+D+S W LN W+FS+PS AND+TAFDQSQDG
Sbjct: 1193 LFGTMARYMRWFRQAFQPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQDG 1252
Query: 2510 AMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYT 2331
AMLQFE+LKAK+ +PE +I+ Y+DIK + +IFLGTLSIMRLTGEGPTFDANTECNIAYT
Sbjct: 1253 AMLQFEVLKAKHHCIPEEIIQAYIDIKTNAQIFLGTLSIMRLTGEGPTFDANTECNIAYT 1312
Query: 2330 HTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGY 2151
HT+F+IP GTAQ+YAGDD A+ V K SF L++++ L++KP T Q++G W EFCG+
Sbjct: 1313 HTKFDIPAGTAQVYAGDDSALDCVPEVKHSFHRLEDKLLLKSKPVITQQKKGSWPEFCGW 1372
Query: 2150 LITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLLSP 1971
LITPKG++KDP+KLH SL+LA+A K + +Y +D AY D L DL +
Sbjct: 1373 LITPKGVMKDPIKLHVSLKLAEA------KGELKKCQDSYEIDLSYAYDHKDSLHDLFNE 1426
Query: 1970 RQAHLHQVTVRDLVKFG 1920
+Q H +T R L+K G
Sbjct: 1427 KQCQAHTLTCRTLIKSG 1443
>gb|AGW45389.1| RNA-dependent RNA polymerase, partial [Plantago asiatica mosaic
virus]
Length = 669
Score = 1070 bits (2768), Expect = 0.0
Identities = 531/677 (78%), Positives = 575/677 (84%), Gaps = 1/677 (0%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
MSNVRNVF+QLTDPSLKAVIQDEAYR LKRELAQTRH+NPFAQ+PEAADALE LGINSHP
Sbjct: 1 MSNVRNVFAQLTDPSLKAVIQDEAYRHLKRELAQTRHNNPFAQSPEAADALEVLGINSHP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLR FHRGPTHGD FLNAHV
Sbjct: 61 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRHFHRGPTHGDHFLNAHV 120
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDVPRYPQ+T+I RLENIPTNIAF+GDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP
Sbjct: 121 EPKDVPRYPQETIIKRLENIPTNIAFIGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 180
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EALYRLRSL+PQIYTLTYSEDGFMYIPGGHAGASYFHKY QLEWLTVGHLTA T+TA
Sbjct: 181 EALYRLRSLHPQIYTLTYSEDGFMYIPGGHAGASYFHKYSQLEWLTVGHLTAPGLLTVTA 240
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLP +YNCRTPISKTIMMQMF
Sbjct: 241 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPAKYNCRTPISKTIMMQMF 300
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFED+LSG
Sbjct: 301 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDILSG 360
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVNTRLRGPPGFHN 4797
NL+QR+LRPL S ++L FFRGRPSFVKLI+ALDWQPITLEFPVR VNT LRGPPGF +
Sbjct: 361 NLLQRILRPLTSGATQILNFFRGRPSFVKLIQALDWQPITLEFPVRKVNTLLRGPPGFDS 420
Query: 4796 PFTKPHPVNPDDADTMRAFREFSYTSETSTPTTIADSLEGSAENLASHTSLKVGHADLST 4617
PFT+P PVNPDDA+T +F+ F + + +LE AE H SL++ LS
Sbjct: 421 PFTRPQPVNPDDAETTHSFQAFCQAA-----AAVETTLEQQAETPDEHQSLRLDCPTLSE 475
Query: 4616 EQLRALHELGNTRLGGPLLPKITPEEQDREXXXXXXXXXXPTKASAALNQ-GDHTDQVPV 4440
QL ALH+LGN R GGPLLP+ T A+ +Q +P
Sbjct: 476 HQLWALHKLGNARCGGPLLPQ---RPDTSTVVEPCPDLPPETHAAPEPSQRNTQAPNLPS 532
Query: 4439 NSDPATLPWVAWLPKLNALGFEALEIQTDPSTGEVIMPITDVRDLPKATLPEHWNEPGLS 4260
DP TLPWVAWLPKLNALGFEALEIQ DPSTG +IMPITD ++LP+A P HW P +
Sbjct: 533 PQDPTTLPWVAWLPKLNALGFEALEIQNDPSTGNMIMPITDTKELPRAIGPAHWQGPDME 592
Query: 4259 KVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHRETQTWKETQTMLTDNVTAN 4080
++++TLRSLNR+PT W PDR+RARAFTSDVKNSRTGKALHRE+Q WKETQTMLT++ N
Sbjct: 593 QIISTLRSLNRYPTPWNPDRSRARAFTSDVKNSRTGKALHRESQVWKETQTMLTESTQTN 652
Query: 4079 LAISVIHGAGGSGKSQA 4029
LAISVIHGAGGSGKSQA
Sbjct: 653 LAISVIHGAGGSGKSQA 669
>ref|YP_002647027.1| replicase [Allium virus X] gi|224579235|gb|ACN58194.1| replicase
[Allium virus X]
Length = 1701
Score = 952 bits (2462), Expect = 0.0
Identities = 487/864 (56%), Positives = 606/864 (70%), Gaps = 1/864 (0%)
Frame = -2
Query: 4493 TKASAALNQGDHTDQVPVNSDPATLPWVAWLPKLNALGFEALEIQTDPST-GEVIMPITD 4317
T+ S G H P N P LPW W+PKLNALGF L +DP ++I PIT
Sbjct: 846 TETSVRDASGFHVAPPPENPAPP-LPWEQWIPKLNALGFSGLARISDPQDKDQLICPITC 904
Query: 4316 VRDLPKATLPEHWNEPGLSKVLTTLRSLNRFPTSWCPDRARARAFTSDVKNSRTGKALHR 4137
++ LPE + + +LTT+ +R P ++ + +RA+A+ SDV+NSRTG L
Sbjct: 905 IKSGFGIFLPEDTDTKPFTDLLTTM---HRMPCAYKVNNSRAKAYASDVENSRTGLLLRS 961
Query: 4136 ETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIEVVLPTNELRL 3957
+ WKE TM + +A+SVIHGAGGSGKS ALQ L+R+NP+L VV PTNELRL
Sbjct: 962 QPDHWKEALTMQAETADHTIALSVIHGAGGSGKSHALQQLIRENPELNFLVVCPTNELRL 1021
Query: 3956 DWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHASLELVILTGD 3777
DWL KLP + +TFE+A S + +IF DY KLP GYIE + + L ILTGD
Sbjct: 1022 DWLAKLPKVELHRIKTFEKALADSTAATIIFGDYSKLPAGYIECYLAARPTATLAILTGD 1081
Query: 3776 PRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVYSSNSCPLKVT 3597
PRQS++HE+NE A+IS+LAP+T+ F + RYYINATHRN + LA LGVYS + ++
Sbjct: 1082 PRQSSYHESNEGAMISQLAPSTSEFGQYCRYYINATHRNKQDLARMLGVYSERTGLTSIS 1141
Query: 3596 YGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDNDTTMCTKEVLY 3417
+P HLLVPS++KK + + G+K STYAGCQGITAP++QILLD DTT+C EVLY
Sbjct: 1142 MSSRPLTDTHLLVPSIIKKRTYMELGYKTSTYAGCQGITAPRLQILLDCDTTLCADEVLY 1201
Query: 3416 TALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXXXXXXXXXXXX 3237
TALSRAV IHF+N+ A S AFW+KL ATPYLKTFL RE+++ E
Sbjct: 1202 TALSRAVHGIHFINTGATSGAFWDKLNATPYLKTFLDFTREERLKESQPREQEPTEPEGP 1261
Query: 3236 XXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFSHQQAKDEALL 3057
PVE++ L++ E L +K +REI HGHTNCVQ +D QLFSHQQAKD+ALL
Sbjct: 1262 TTHFPVENEKFVLEEQVEELLEKHDREILRPDHGHTNCVQTEDAVIQLFSHQQAKDQALL 1321
Query: 3056 WETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSEDLWTRCAEEVQ 2877
W TI+ARL IS P+AN+ EF AKK++GD+L+ +YH+AMKLP + F EDLW CA+EVQ
Sbjct: 1322 WATIEARLKISNPKANIAEFNAKKEIGDVLFEHYHQAMKLPDKPIPFMEDLWVACAQEVQ 1381
Query: 2876 NTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPGQTIASFQQHA 2697
TYL K I+ +K GE RQSPDF ++ I +FLKSQWVKKMEKLGA KIKPGQTIASFQQ A
Sbjct: 1382 GTYLSKPINMLKNGEYRQSPDFDKNTIALFLKSQWVKKMEKLGAPKIKPGQTIASFQQSA 1441
Query: 2696 VMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQ 2517
VMLYGTMARYMRR R+A P IMINCEK PQ LS W+ NYW F+ +YANDFT FDQSQ
Sbjct: 1442 VMLYGTMARYMRRMREAFQPPEIMINCEKDPQTLSHWIQNYWKFNSYAYANDFTQFDQSQ 1501
Query: 2516 DGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIA 2337
DGAMLQFEILKAK+ ++PEWV+EGYLDIK + K+F G LSIMRLTGEGPTFDANTECNIA
Sbjct: 1502 DGAMLQFEILKAKHHSIPEWVLEGYLDIKTNAKVFSGVLSIMRLTGEGPTFDANTECNIA 1561
Query: 2336 YTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFC 2157
YTH RF++P+GTAQ+YAGDD A++ + PE+PSFA K ++ L +KPA Q+RG WAEFC
Sbjct: 1562 YTHLRFDVPKGTAQLYAGDDSALSCLPPERPSFADFKQQLTLTSKPALFAQKRGFWAEFC 1621
Query: 2156 GYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAYSLGDDLQDLL 1977
GYLITP G++KDP KL A++ LA+ Q K + +++LD KLAY D L ++L
Sbjct: 1622 GYLITPLGIMKDPAKLAATVVLAQKQNK------LHECWRSHALDLKLAYVHRDALTEVL 1675
Query: 1976 SPRQAHLHQVTVRDLVKFGGSPFL 1905
S +Q LHQ+TVR LVK G S L
Sbjct: 1676 SEKQQELHQLTVRTLVKSGASEIL 1699
Score = 428 bits (1101), Expect = e-116
Identities = 221/410 (53%), Positives = 283/410 (69%), Gaps = 1/410 (0%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
M+ VR S TDP++K V+Q++ Y+ K+ +A+T+ SNP+A AD LE L I S+P
Sbjct: 1 MARVREALSNFTDPAVKVVLQNDHYQEFKKTMARTKLSNPYALKETEADTLENLEILSNP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
+AI HTHAAAKAIE+DLY V SH LP E P++FLFMK KL F RGP GD FLN V
Sbjct: 61 FAIETHTHAAAKAIENDLYFVASHQLPAE-PITFLFMKRNKLAQFRRGPQQGDIFLNKIV 119
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKD+ RYP+DT+I L ++ T +AFMGDTLHFLS F+ LF + LQTL AT+VLP
Sbjct: 120 EPKDIARYPEDTLIDSL-HVNTEVAFMGDTLHFLSFHFLGRLFHLNKNLQTLVATMVLPA 178
Query: 5516 EALYRLRSLYPQIYTLTY-SEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTIT 5340
EA YR+ SL+P +YTL+Y E F+Y PGGH GA Y H + QL+WL VG + NQ IT
Sbjct: 179 EAKYRMASLHPNVYTLSYFGEHNFIYAPGGHHGAEYVHDFKQLDWLRVGRVRYKNQ-IIT 237
Query: 5339 AQRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQM 5160
AQR+E+K ANHLF+FQRGN TP R F T + YVT+P IFLP+++N R PI KT++MQ+
Sbjct: 238 AQRIESKAANHLFVFQRGNLNTPPLRGFGTCKKYVTLPRIFLPKKFNTRVPIEKTLVMQI 297
Query: 5159 FFYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLS 4980
F Y+K V + ERDI+AK RQLI T +LQ + SE+ +VNYF F A DS TCF D+LS
Sbjct: 298 FTYVKGVAKVTERDIYAKVRQLIKTDQLQGFDASELVHIVNYFCFIAKQDSMTCFSDILS 357
Query: 4979 GNLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITLEFPVRTVN 4830
G+L ++L +PL + + F G P F KL+KAL WQ IT+ V +N
Sbjct: 358 GSLFKKLFQPLAAFLAECKHFIFGEPDFKKLLKALQWQDITMVVTVADIN 407
>gb|AFM77886.1| replicase [Hosta virus X]
Length = 1473
Score = 946 bits (2445), Expect = 0.0
Identities = 493/870 (56%), Positives = 606/870 (69%), Gaps = 11/870 (1%)
Frame = -2
Query: 4493 TKASAALNQG-----DHT-DQVPVNSDPA--TLPWVAWLPKLNALGFEALEIQTDPSTGE 4338
++AS+A +G D T +Q P + P LPW WL +L A+GF+ E Q D G
Sbjct: 591 SQASSATTRGRDPVIDRTREQAPTSITPEEEALPWKHWLKQLKAVGFKGNETQMD-GDGT 649
Query: 4337 VIMPITDVRDLPKATLPEHWNEPGLSK-VLTTLRSLNRFPTSWCPDRARARAFTSDVKNS 4161
I PI ++ +P + N +SK +L TLRS+ R PTSW PD +RARA+TSD+KN
Sbjct: 650 TISPIEQIKSMPVS------NPSSVSKEILETLRSVARAPTSWKPDASRARAYTSDIKNR 703
Query: 4160 RTGKALHRETQTWKETQTMLTDNVTANLAISVIHGAGGSGKSQALQTLLRQNPDLPIE-- 3987
RTG A+H Q WKET + +N L ISVIHGAGGSGKS+ LQ +L + L E
Sbjct: 704 RTGAAVHMAPQAWKETMDFIAENAERTLHISVIHGAGGSGKSRCLQEMLNKFHFLFDETL 763
Query: 3986 VVLPTNELRLDWLKKLPHNPPEQFRTFERAFVCSKSPIVIFDDYGKLPQGYIEAFAMTHA 3807
VV PTNELR DW+ KLP + P TFERA + VIFDDY KLP G+IEA+++
Sbjct: 764 VVCPTNELRRDWIDKLPLSEPGSVLTFERALMNPAKGTVIFDDYTKLPAGFIEAYSICQP 823
Query: 3806 SLELVILTGDPRQSTHHEANEEALISKLAPATTIFSELSRYYINATHRNSKFLANKLGVY 3627
++ELVILTGD +Q++HHE+N+ A+I+ L PA FS+ RYY+NATHRN + LAN LG+Y
Sbjct: 824 NVELVILTGDAKQASHHESNDNAMIAGLDPAALEFSKFCRYYLNATHRNPRNLANALGIY 883
Query: 3626 SSNSCPLKVTYGFQPQPGLHLLVPSLVKKAAFTDAGHKVSTYAGCQGITAPKVQILLDND 3447
S LKVT+ P +H+LVPSL+KKA + GHK STYAGCQG+T KVQI LD++
Sbjct: 884 SEKPGNLKVTFTNHLLPEMHILVPSLLKKATLEELGHKCSTYAGCQGVTLSKVQIYLDSN 943
Query: 3446 TTMCTKEVLYTALSRAVDSIHFVNSNAQSSAFWEKLEATPYLKTFLSLVREDKIAEFSXX 3267
TT+C+ EVLYTALSRAV+ I+FVNS + FW KLEATPYLKTFL L RE+KI E +
Sbjct: 944 TTLCSNEVLYTALSRAVEQINFVNSGPFNGPFWAKLEATPYLKTFLRLTREEKINEITPE 1003
Query: 3266 XXXXXXXXXXXXXXPVEDKTTTLDDFKESLSDKFEREIFTEAHGHTNCVQGDDPTTQLFS 3087
PVE E + +K REI+ + HGHTNCVQ D+P Q+F+
Sbjct: 1004 EPKPKEPEPPKTHFPVETSAHLYSSITEEMPEKHAREIYNKTHGHTNCVQTDEPLVQMFA 1063
Query: 3086 HQQAKDEALLWETIKARLTISTPEANLEEFRAKKDLGDILWANYHKAMKLPKEQPEFSED 2907
HQQAKDEAL WETI+ARL I+T EAN++E K+D+GD+L+ YHKAM LPK+ F D
Sbjct: 1064 HQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAYHKAMGLPKDPIPFEND 1123
Query: 2906 LWTRCAEEVQNTYLKKSISQIKGGERRQSPDFHEHQILIFLKSQWVKKMEKLGAKKIKPG 2727
LW CA+EVQ TYL K I+ IK GE+RQ PDF ++ I++FLKSQWVKKMEKLGA IKPG
Sbjct: 1124 LWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKSQWVKKMEKLGAPTIKPG 1183
Query: 2726 QTIASFQQHAVMLYGTMARYMRRFRDALSPNNIMINCEKTPQDLSRWVLNYWDFSKPSYA 2547
QTIASF Q VMLYGTMARYMRR RD P +I+INCEKTP +S +V WDFS +YA
Sbjct: 1184 QTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPTQISDFVKAQWDFSDFAYA 1243
Query: 2546 NDFTAFDQSQDGAMLQFEILKAKYFNLPEWVIEGYLDIKLSPKIFLGTLSIMRLTGEGPT 2367
NDFTAFDQSQDGAMLQFEI+KAK+ N+PE +I GY+DIK + KIFLGTL+IMRLTGEGPT
Sbjct: 1244 NDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTNAKIFLGTLAIMRLTGEGPT 1303
Query: 2366 FDANTECNIAYTHTRFEIPEGTAQIYAGDDCAIAQVCPEKPSFALLKNRIALQAKPAYTP 2187
FDANTECNIAYTH RF +PE AQ+YAGDD A+++VCPEK SF +R+ L++KP P
Sbjct: 1304 FDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEKDSFKQFADRLTLKSKPQVFP 1363
Query: 2186 QERGQWAEFCGYLITPKGLIKDPLKLHASLELAKAQKKAGVKDAISNVIANYSLDAKLAY 2007
Q +G WAEFCG LITP+G+IKDP+KLHAS LA K G I + +Y D KL+Y
Sbjct: 1364 QTQGAWAEFCGLLITPRGIIKDPVKLHASWVLA---TKLGTLQQI-KCVNSYGEDLKLSY 1419
Query: 2006 SLGDDLQDLLSPRQAHLHQVTVRDLVKFGG 1917
LGD LQ+LLS Q HQVTVR+LVKF G
Sbjct: 1420 DLGDHLQELLSESQCRTHQVTVRELVKFAG 1449
Score = 410 bits (1053), Expect = e-111
Identities = 203/401 (50%), Positives = 269/401 (67%)
Frame = -2
Query: 6056 MSNVRNVFSQLTDPSLKAVIQDEAYRTLKRELAQTRHSNPFAQTPEAADALEALGINSHP 5877
M+ +R VFS T+P+LK ++Q E Y+ K EL + NP+AQT +AAD LE LGIN++P
Sbjct: 1 MARLREVFSSFTEPNLKTIVQQETYKLAKAELKTIQTYNPYAQTKDAADLLEDLGINTNP 60
Query: 5876 YAITPHTHAAAKAIESDLYEVVSHYLPKENPVSFLFMKPAKLRFFHRGPTHGDFFLNAHV 5697
+A+ HTHAAAK+IE+DLY + SHYLPK P++FLFMK KL+FF RGP H D F
Sbjct: 61 HAVAAHTHAAAKSIENDLYGITSHYLPK-TPITFLFMKRGKLQFFKRGPQHNDLFFYTTH 119
Query: 5696 EPKDVPRYPQDTVISRLENIPTNIAFMGDTLHFLSPSFVTALFAHSPKLQTLYATLVLPP 5517
EPKDV RY + + + +PT+ AF+GDTLHFLS ++ LF +P L TLYAT+VLPP
Sbjct: 120 EPKDVIRYQSEDQTADMFRVPTSTAFIGDTLHFLSLKYLHRLFLKNPNLNTLYATMVLPP 179
Query: 5516 EALYRLRSLYPQIYTLTYSEDGFMYIPGGHAGASYFHKYDQLEWLTVGHLTAANQPTITA 5337
EA+YR+ S+YP+IY + Y EDGF+YIPGGH GA+YFH YD L WL VG A + T+T
Sbjct: 180 EAMYRMASIYPEIYQIQYQEDGFLYIPGGHGGAAYFHTYDTLTWLRVGQF-QAKEFTLTF 238
Query: 5336 QRLETKGANHLFIFQRGNYLTPERRTFTTTEHYVTVPDIFLPERYNCRTPISKTIMMQMF 5157
Q+LETKGANHLFI QR + TP+ RTF +VT+P+IFLP+ N R PI K MMQ+F
Sbjct: 239 QKLETKGANHLFIIQRADLKTPKYRTFVPRRKWVTLPNIFLPKHTNARKPILKQTMMQLF 298
Query: 5156 FYIKSVKEAKERDIWAKFRQLISTKELQHYQPSEITLLVNYFEFTASLDSHTCFEDVLSG 4977
Y KSVKE RD++AK RQLI TK+L+ + P E+ L NY T+ L +E +
Sbjct: 299 LYEKSVKEITFRDVFAKIRQLIQTKDLEQFDPDELVRLANYVMHTSKLLEKNPYELIEGQ 358
Query: 4976 NLIQRLLRPLRSDIQRVLQFFRGRPSFVKLIKALDWQPITL 4854
+Q L+ P+++ + Q + G + +L KAL W + L
Sbjct: 359 GKLQDLVNPIKTWVSEKWQDWFGWKDYTRLTKALKWVDVDL 399