BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia26_contig00000001
         (3536 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot...  1407   0.0  
emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot v...  1093   0.0  
gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus]         934   0.0  
gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus]         933   0.0  
gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus]         932   0.0  
gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus]         929   0.0  
gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus]         926   0.0  
ref|YP_227374.1| putative 40 kDa movement protein [Strawberry la...   621   e-175
ref|YP_227375.1| large coat protein [Strawberry latent ringspot ...   521   e-144
ref|YP_227376.1| small coat protein [Strawberry latent ringspot ...   280   3e-72
gb|ABC58719.1| coat protein [Strawberry latent ringspot virus] g...   264   2e-67
gb|ABC58721.2| coat protein [Strawberry latent ringspot virus]        263   3e-67
gb|AAR99477.1| coat protein [Strawberry latent ringspot virus] g...   261   2e-66
gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot...   245   9e-62
gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot...   243   3e-61
gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot...   241   1e-60
gb|AEF97400.1| coat protein [Strawberry latent ringspot virus]        231   1e-57
gb|AEF97401.1| coat protein [Strawberry latent ringspot virus]        230   4e-57
gb|AAY56484.1| unknown [Strawberry latent ringspot virus]              63   8e-07

>ref|YP_227368.1| 109 kDa polyprotein [Strawberry latent ringspot virus]
            gi|58040999|gb|AAW63129.1| 109 kDa polyprotein
            [Strawberry latent ringspot virus]
          Length = 989

 Score = 1407 bits (3642), Expect = 0.0
 Identities = 686/994 (69%), Positives = 797/994 (80%)
 Frame = +2

Query: 308  MTSFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 487
            M SFF +RST EMP+VPSYS +E+EVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 488  SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFKKM 667
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKLTHQTTVVHTP+ ++  M
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 668  KEEKLRNGKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 847
            + ++L+  KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 848  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 1027
            IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 1028 NIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTKT 1207
            NI DAH+LPEPLPYSKLKEKYP G++GLSNFQAAE+APLQPARLTRSASY+PI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 1208 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 1387
            VLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAALP  P  KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 1388 GSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTL 1567
            G  EASG  HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNVGT VYTL
Sbjct: 361  GEAEASG-LHEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTL 419

Query: 1568 PIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRER 1747
            P+I+TSLKDTEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRER
Sbjct: 420  PLIRTSLKDTEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRER 479

Query: 1748 ALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGME 1927
            AL LQGTWFMPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GME
Sbjct: 480  ALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGME 539

Query: 1928 LSLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEA 2107
            LSL+L+V+ IG+G         +F PLRQVV+D++LSTTT KGKA            D A
Sbjct: 540  LSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGA 599

Query: 2108 QFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSS 2287
            Q+YPSCSSSILENHRYWKGTL LEV+FNLPAM GG  E  FA D+    E DAYR FGS+
Sbjct: 600  QWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGST 659

Query: 2288 VVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQTSFGDVLKLVILFTAPLHISDTSR 2467
            VVDLRAHR+LRARVP               F V P T +G  L+ V+LFTAPLHISDT++
Sbjct: 660  VVDLRAHRLLRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTK 719

Query: 2468 KGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRVP 2647
            KGSV+VRYLGLED +Y++P TS+GRLNP TTL    VASG PV++VGT +W EP + R+P
Sbjct: 720  KGSVMVRYLGLEDCEYIQPTTSLGRLNPATTL----VASGAPVVQVGTSDWVEPPLFRLP 775

Query: 2648 LGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQWR 2827
            LGL Q+ FRL+TI+KW  SGFL+FP TPS H+P+  G FE  +EQ  PLMHRSQEN QW 
Sbjct: 776  LGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTFEGEVEQHSPLMHRSQENAQWS 835

Query: 2828 GTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDTF 3007
            G+L Y+L+ R  GAT Q VLP R +   A +L  I+  PCF++  TF  ++P+   R+T 
Sbjct: 836  GSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRETI 895

Query: 3008 SLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWVE 3187
             L        + TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWVE
Sbjct: 896  YLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVLLQFPNEEASHLGVRDISLWVE 955

Query: 3188 PDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3289
            P + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 956  PKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 989


>emb|CAA54615.1| 98.8kD polyprotein [Strawberry latent ringspot virus]
          Length = 890

 Score = 1093 bits (2827), Expect = 0.0
 Identities = 552/842 (65%), Positives = 640/842 (76%)
 Frame = +2

Query: 665  MKEEKLRNGKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVL 844
            M+ ++L+  KDT EEEPKY    V +    V S  S  SNQIAGVVLLDGNR+TQE AVL
Sbjct: 1    MESKRLKKTKDTDEEEPKYALMFVLSTWSHVPSFWS--SNQIAGVVLLDGNRATQETAVL 58

Query: 845  GIGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVR 1024
            GIGVLPLYEAHSHALFAPRL I      F DRLQLLTTFSD VLGGGSPAMSYSTISVVR
Sbjct: 59   GIGVLPLYEAHSHALFAPRL-ISTMMIEFCDRLQLLTTFSDVVLGGGSPAMSYSTISVVR 117

Query: 1025 HNIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTK 1204
            HN+ DAH+LPEPLPYSK KEK   GV+GLSNFQAAE+APLQPARLTRSASY+PIQR+G K
Sbjct: 118  HNVRDAHFLPEPLPYSKSKEK-TSGVKGLSNFQAAEIAPLQPARLTRSASYMPIQRSGEK 176

Query: 1205 TVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQH 1384
            TVLTFEDN A ++EQQP +ARASFSF+ +SYGQQDRAALPS P  KC FHN+VGCPC QH
Sbjct: 177  TVLTFEDNQASLREQQPFEARASFSFSGVSYGQQDRAALPSAPSPKCAFHNRVGCPCKQH 236

Query: 1385 TGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYT 1564
            TG  EASG H EELVPAS GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNVGT VYT
Sbjct: 237  TGEAEASGLH-EELVPASSGGTEAIFFSPKSIPLPGSAKFVGSHPFSFPINSNVGTTVYT 295

Query: 1565 LPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRE 1744
            LP+I+TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRE
Sbjct: 296  LPLIRTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRE 355

Query: 1745 RALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGM 1924
            RAL LQGTWFMPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GM
Sbjct: 356  RALMLQGTWFMPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGM 415

Query: 1925 ELSLYLEVEKIGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDE 2104
            ELSL+L+V+ IG+G         +F PLRQVV+D++LSTTT KGKA            D 
Sbjct: 416  ELSLFLDVQDIGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDG 475

Query: 2105 AQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGS 2284
            AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM GG  E  FA D+    E DAYR FGS
Sbjct: 476  AQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSYSGWESDAYRYFGS 535

Query: 2285 SVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVKPQTSFGDVLKLVILFTAPLHISDTS 2464
            +VVDLRAHR+LRA+VP               F V P T +G  L+ V+LFTAPLHISDT+
Sbjct: 536  TVVDLRAHRLLRAKVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTT 595

Query: 2465 RKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVPNVVASGGPVIKVGTLEWEEPFISRV 2644
            + GSV+VRYLGLED +Y++P TS+GRLNP TTL    VASG PV++VGT +W EP + R+
Sbjct: 596  KTGSVMVRYLGLEDCEYIQPTTSLGRLNPATTL----VASGAPVVQVGTSDWVEPLLFRL 651

Query: 2645 PLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGFEASLEQQCPLMHRSQENCQW 2824
            PLGL QK FRL+TI+KW  SGFL+FP TPS H+P+ AG FE  +EQ  PLMHRSQEN QW
Sbjct: 652  PLGLLQKRFRLLTISKWPKSGFLFFPTTPSSHIPKLAGTFEGEVEQHSPLMHRSQENAQW 711

Query: 2825 RGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAPCFVDNSTFKPLLPLLSVRDT 3004
             G+L Y+L+ R  GAT Q VLP R +   A +L  I+  PCF++  TF  ++P+   R+T
Sbjct: 712  SGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKPCFIEKDTFVQVMPMADPRET 771

Query: 3005 FSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVLLQFPPKTMAQLHVRDVSLWV 3184
              L        + TPP RW NTHFGATE Y  RTCP WVLLQFP +  + L VRD+SLWV
Sbjct: 772  IYLPTTDSIASYETPPRRWVNTHFGATETYGVRTCPAWVLLQFPNEEASHLGVRDISLWV 831

Query: 3185 EP 3190
            EP
Sbjct: 832  EP 833


>gb|ADN88403.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  934 bits (2413), Expect = 0.0
 Identities = 460/720 (63%), Positives = 541/720 (75%), Gaps = 3/720 (0%)
 Frame = +2

Query: 1139 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1318
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 1319 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1498
            LPS PPQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 1499 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1678
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1679 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1858
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1859 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGEL---TTFYPLRQVVLDY 2029
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2030 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2209
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2210 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2389
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2390 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2569
            P T +G  L+ V+LFTAPLHISD ++KGSV++RYLGLED +Y++P TS+GRLNP TTL  
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTL-- 474

Query: 2570 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2749
              VASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+ P+TPS H+P+
Sbjct: 475  --VASGAPVVQVGTSDWVEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532

Query: 2750 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2929
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592

Query: 2930 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3109
            IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3110 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3289
            P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88405.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  933 bits (2411), Expect = 0.0
 Identities = 460/720 (63%), Positives = 540/720 (75%), Gaps = 3/720 (0%)
 Frame = +2

Query: 1139 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1318
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 1319 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1498
            LPS PPQKC FHN+VGCPC QHTG  E SG H EELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPQKCSFHNRVGCPCTQHTGEAEPSGLH-EELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 1499 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1678
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1679 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1858
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1859 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGEL---TTFYPLRQVVLDY 2029
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2030 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2209
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2210 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2389
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2390 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2569
            P T +G  L+ V+LFTAPLHISD ++KGSV++RYLGLED +Y++P TS+GRLNP TTL  
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDATKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTL-- 474

Query: 2570 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2749
              VASG PV++VGT +W EP   R+PLGL QK FRL+TI+KW  SGFL+ P+TPS H+P+
Sbjct: 475  --VASGAPVVQVGTFDWVEPPSLRLPLGLLQKKFRLLTISKWPKSGFLFLPMTPSSHIPK 532

Query: 2750 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2929
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPLRPVCFGATVLDN 592

Query: 2930 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3109
            IL  PCFV+  TF  ++P+    +T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPGETVYLPTTESIAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3110 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3289
            P WVLLQFP +  + L VRDVSLWVEP+I YRH +GGFP+  P P PA  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISYRHAVGGFPILKPTPPPAIDYYYENTFPVG 712


>gb|ADN88406.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  932 bits (2410), Expect = 0.0
 Identities = 458/720 (63%), Positives = 543/720 (75%), Gaps = 3/720 (0%)
 Frame = +2

Query: 1139 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1318
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 1319 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1498
            LPS P  KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ V  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSVPVPGSA 119

Query: 1499 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1678
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRLI S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLISSAPIQ 179

Query: 1679 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1858
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1859 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGEL---TTFYPLRQVVLDY 2029
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2030 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2209
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2210 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2389
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRHFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2390 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2569
            P T +G  L+ V+LFTAPLHISDT++KGSV++RYLGLED +Y++P TS+GRLNP TTL  
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTL-- 474

Query: 2570 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2749
              VASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 475  --VASGAPVVQVGTSDWMEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 2750 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2929
              G FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LVGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592

Query: 2930 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3109
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILGKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3110 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3289
            P WVLLQFP +  + L VRD+SLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDISLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88404.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  929 bits (2401), Expect = 0.0
 Identities = 456/720 (63%), Positives = 543/720 (75%), Gaps = 3/720 (0%)
 Frame = +2

Query: 1139 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1318
            PLQPARLTRSASY+P+QR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPVQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 1319 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1498
            LPS P  KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGSA 119

Query: 1499 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1678
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1679 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1858
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELAT +G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATLSGYSIMNSDH 239

Query: 1859 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGELT---TFYPLRQVVLDY 2029
            NGAFKVVIIKDL NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKDLENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2030 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2209
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVIPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2210 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2389
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2390 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2569
            P T +G  L+ V+LFTAPLHISDT++KGSV++RYLGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRYLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 2570 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2749
               ASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 2750 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2929
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPQGVLPMRPVCFGATVLDN 592

Query: 2930 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3109
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3110 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3289
            P WVLLQFP +  + L VRDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGVRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>gb|ADN88402.1| polyprotein [Strawberry latent ringspot virus]
          Length = 712

 Score =  926 bits (2394), Expect = 0.0
 Identities = 454/720 (63%), Positives = 543/720 (75%), Gaps = 3/720 (0%)
 Frame = +2

Query: 1139 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1318
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAA 60

Query: 1319 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1498
            LPS P  KC FHN+VGCPC QHTG  E SG H E+LVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCPFHNRVGCPCKQHTGEAEPSGLH-EDLVPAASGGTEAIFFSPKSIPVPGGA 119

Query: 1499 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLRCKPTVRLIGSGPIQ 1678
            KFVGSHPFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R KPTVRL+ S PIQ
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMRFKPTVRLVSSAPIQ 179

Query: 1679 AKGLLWLCYDPSETLAKYPSRERALALQGTWFMPGRHDSTSLTVQELATPAGFCDMSTDV 1858
            AKGLLWLCYDP ETLAKYPSRERAL LQG WFMPGRHDS +LT+ ELATP+G+  M++D 
Sbjct: 180  AKGLLWLCYDPCETLAKYPSRERALMLQGVWFMPGRHDSVTLTIDELATPSGYSIMNSDH 239

Query: 1859 NGAFKVVIIKDLANFDVSDYGMELSLYLEVEKIGLGDVIGGGELT---TFYPLRQVVLDY 2029
            NGAFKVVIIK L NF+V+D GMELSL+L+V+ IG+G    G EL    +F PLRQVV+D+
Sbjct: 240  NGAFKVVIIKALENFEVADLGMELSLFLDVQDIGMGI---GPELPLTDSFLPLRQVVVDF 296

Query: 2030 ELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSSILENHRYWKGTLSLEVVFNLPAMAG 2209
            +LSTTT KGKA            D AQ+YPSCSSSILENHRYWKGTL LEV+FNLPAM G
Sbjct: 297  DLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSSILENHRYWKGTLVLEVIFNLPAMGG 356

Query: 2210 GIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRILRARVPXXXXXXXXXXXXXXXFEVK 2389
            G  E  FA ++    E DAYR FGS+VVDLRAHR+LRA+VP               F V 
Sbjct: 357  GTVEMGFANNSYSGWESDAYRYFGSTVVDLRAHRLLRAKVPLYGYGGYLMGGSGSLFAVP 416

Query: 2390 PQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYLGLEDLDYLEPATSIGRLNPKTTLVP 2569
            P T +G  L+ V+LFTAPLHISDT++KGSV++R+LGLED +Y++P TS+GRLNP TTLV 
Sbjct: 417  PLTDYGQSLRFVLLFTAPLHISDTTKKGSVMIRFLGLEDCEYIQPTTSLGRLNPATTLV- 475

Query: 2570 NVVASGGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPR 2749
               ASG PV++VGT +W EP + R+PLGL QK FRL+TI+KW  SGFL+FP+TPS H+P+
Sbjct: 476  ---ASGAPVVQVGTSDWTEPPLLRLPLGLLQKKFRLLTISKWPKSGFLFFPMTPSSHMPK 532

Query: 2750 TAGGFEASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSK 2929
             AG FE  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT + VLP R + F A +L  
Sbjct: 533  LAGTFEGEVEQHSPLMHRSQENAQWCGSLTYYLSIRYSGATPRGVLPMRPVCFGATVLDN 592

Query: 2930 ILPAPCFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTC 3109
            IL  PCFV+  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTC
Sbjct: 593  ILDKPCFVEKDTFIQVMPMADPRETIYLPTTESVAFYETPPRRWVNTHFGATESYGVRTC 652

Query: 3110 PVWVLLQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3289
            P WVLLQFP +  + L +RDVSLWVEP+I +RH +GGFP+  P P+P+  YY+ENTF VG
Sbjct: 653  PAWVLLQFPNEEASHLGIRDVSLWVEPNISFRHAVGGFPILKPTPAPSIDYYYENTFPVG 712


>ref|YP_227374.1| putative 40 kDa movement protein [Strawberry latent ringspot virus]
          Length = 366

 Score =  621 bits (1601), Expect = e-175
 Identities = 300/366 (81%), Positives = 335/366 (91%)
 Frame = +2

Query: 308  MTSFFRKRSTQEMPNVPSYSAKELEVLKAAITECGINYADVVRAAQTESGKMAILTAANT 487
            M SFF +RST EMP+VPSYS +E+EVLK+AITECGINYADVVRAAQTESGK+AILTAANT
Sbjct: 1    MASFFSRRSTPEMPSVPSYSPREMEVLKSAITECGINYADVVRAAQTESGKLAILTAANT 60

Query: 488  SQLKSLIATTSTSNALARLKEKPKAVVHVSEGVGRQVLCDDKLTHQTTVVHTPEPLFKKM 667
            + LKSL+ATT+T +A  RL E PKA+VHV+EGVG+QVLCDDKLTHQTTVVHTP+ ++  M
Sbjct: 61   NSLKSLVATTTTQSAFRRLSESPKAIVHVAEGVGKQVLCDDKLTHQTTVVHTPKKVYDHM 120

Query: 668  KEEKLRNGKDTGEEEPKYRSADVCTIQLGVTSHLSGHSNQIAGVVLLDGNRSTQEQAVLG 847
            + ++L+  KDT EEEPKYRSAD+CTIQLGVTSHLSGHSNQIAG+VLLDGNR+TQEQAVLG
Sbjct: 121  RSKRLKKTKDTDEEEPKYRSADICTIQLGVTSHLSGHSNQIAGIVLLDGNRATQEQAVLG 180

Query: 848  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 1027
            IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH
Sbjct: 181  IGVLPLYEAHSHALFAPRLNIHYDDPNFVDRLQLLTTFSDDVLGGGSPAMSYSTISVVRH 240

Query: 1028 NIVDAHYLPEPLPYSKLKEKYPCGVRGLSNFQAAEVAPLQPARLTRSASYVPIQRAGTKT 1207
            NI DAH+LPEPLPYSKLKEKYP G++GLSNFQAAE+APLQPARLTRSASY+PI+R+G KT
Sbjct: 241  NIADAHFLPEPLPYSKLKEKYPSGLKGLSNFQAAEIAPLQPARLTRSASYMPIRRSGAKT 300

Query: 1208 VLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVGCPCAQHT 1387
            VLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAALP  P  KC FHN+VGCPC QHT
Sbjct: 301  VLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAALPFAPSPKCSFHNRVGCPCKQHT 360

Query: 1388 GSTEAS 1405
            G  EAS
Sbjct: 361  GEAEAS 366


>ref|YP_227375.1| large coat protein [Strawberry latent ringspot virus]
          Length = 388

 Score =  521 bits (1341), Expect = e-144
 Identities = 256/384 (66%), Positives = 298/384 (77%)
 Frame = +2

Query: 1415 HEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKD 1594
            HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKD
Sbjct: 3    HEELVPAASGGTEAIFFSPRSIPLPGSAKFVGSHPFSFPINSNVGTTVYTLPLIRTSLKD 62

Query: 1595 TEWGRFYKGYRYLRCKPTVRLIGSGPIQAKGLLWLCYDPSETLAKYPSRERALALQGTWF 1774
            TEWGR+YK Y ++R KPTVRL+ S PIQAKGLLWLCYDP ETLAKYPSRERAL LQGTWF
Sbjct: 63   TEWGRYYKSYTFMRFKPTVRLVSSAPIQAKGLLWLCYDPCETLAKYPSRERALMLQGTWF 122

Query: 1775 MPGRHDSTSLTVQELATPAGFCDMSTDVNGAFKVVIIKDLANFDVSDYGMELSLYLEVEK 1954
            MPGRHDS +LT+ ELATP+G+  M++D NGAFKVVIIKDL NF+V+D GMELSL+L+V+ 
Sbjct: 123  MPGRHDSVTLTIDELATPSGYSIMTSDHNGAFKVVIIKDLENFEVADLGMELSLFLDVQD 182

Query: 1955 IGLGDVIGGGELTTFYPLRQVVLDYELSTTTSKGKAXXXXXXXXXXAHDEAQFYPSCSSS 2134
            IG+G         +F PLRQVV+D++LSTTT KGKA            D AQ+YPSCSSS
Sbjct: 183  IGMGMGPEMPLTDSFLPLRQVVVDFDLSTTTPKGKALVVPLNPLLPGFDGAQWYPSCSSS 242

Query: 2135 ILENHRYWKGTLSLEVVFNLPAMAGGIAEFAFAYDTQDATEGDAYRRFGSSVVDLRAHRI 2314
            ILENHRYWKGTL LEV+FNLPAM GG  E  FA D+    E DAYR FGS+VVDLRAHR+
Sbjct: 243  ILENHRYWKGTLVLEVIFNLPAMGGGTVEMGFANDSCSGRESDAYRYFGSTVVDLRAHRL 302

Query: 2315 LRARVPXXXXXXXXXXXXXXXFEVKPQTSFGDVLKLVILFTAPLHISDTSRKGSVLVRYL 2494
            LRARVP               F V P T +G  L+ V+LFTAPLHISDT++KGSV+VRYL
Sbjct: 303  LRARVPLHGYGGYLMGGSGSLFAVPPLTDYGQSLRFVLLFTAPLHISDTTKKGSVMVRYL 362

Query: 2495 GLEDLDYLEPATSIGRLNPKTTLV 2566
            GLED +Y++P TS+GRLNP TTLV
Sbjct: 363  GLEDCEYIQPTTSLGRLNPATTLV 386


>ref|YP_227376.1| small coat protein [Strawberry latent ringspot virus]
          Length = 235

 Score =  280 bits (716), Expect = 3e-72
 Identities = 127/235 (54%), Positives = 161/235 (68%)
 Frame = +2

Query: 2585 GGPVIKVGTLEWEEPFISRVPLGLRQKTFRLMTINKWSPSGFLYFPVTPSVHLPRTAGGF 2764
            G PV++VGT +W EP + R+PLGL Q+ FRL+TI+KW  SGFL+FP TPS H+P+  G F
Sbjct: 1    GAPVVQVGTSDWVEPPLFRLPLGLLQRRFRLLTISKWPKSGFLFFPTTPSSHIPKLVGTF 60

Query: 2765 EASLEQQCPLMHRSQENCQWRGTLRYHLTARLEGATEQFVLPHRSLTFSAVLLSKILPAP 2944
            E  +EQ  PLMHRSQEN QW G+L Y+L+ R  GAT Q VLP R +   A +L  I+  P
Sbjct: 61   EGEVEQHSPLMHRSQENAQWSGSLTYYLSIRYSGATPQGVLPLRPVCLGATILDNIMGKP 120

Query: 2945 CFVDNSTFKPLLPLLSVRDTFSLGQDHPFVEFTTPPGRWTNTHFGATEQYTWRTCPVWVL 3124
            CF++  TF  ++P+   R+T  L        + TPP RW NTHFGATE Y  RTCP WVL
Sbjct: 121  CFIEKDTFVQVMPMADPRETIYLPTTDSVASYVTPPRRWVNTHFGATEMYGVRTCPAWVL 180

Query: 3125 LQFPPKTMAQLHVRDVSLWVEPDIEYRHPMGGFPLTIPDPSPAPKYYFENTFVVG 3289
            LQFP +  + L VRD+SLWVEP + +RH +GGFP+  P P+PA  YY+ENTF VG
Sbjct: 181  LQFPNEEASHLGVRDISLWVEPKVTFRHAVGGFPILKPTPAPAIDYYYENTFPVG 235


>gb|ABC58719.1| coat protein [Strawberry latent ringspot virus]
            gi|84380737|gb|ABC58720.1| coat protein [Strawberry
            latent ringspot virus]
          Length = 165

 Score =  264 bits (675), Expect = 2e-67
 Identities = 123/166 (74%), Positives = 142/166 (85%)
 Frame = +2

Query: 1139 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1318
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQQDRA+
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQQDRAS 60

Query: 1319 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1498
            LPS P  KC FHN+VGCPC QHTG  EASG  HEEL+PA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELIPAASGGTEAIFFSPKSIPLPGSA 119

Query: 1499 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLR 1636
            KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|ABC58721.2| coat protein [Strawberry latent ringspot virus]
          Length = 165

 Score =  263 bits (673), Expect = 3e-67
 Identities = 123/166 (74%), Positives = 142/166 (85%)
 Frame = +2

Query: 1139 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1318
            PLQPARLTRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAA
Sbjct: 1    PLQPARLTRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAA 60

Query: 1319 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1498
            LPS PP KC FHN+VGCPC QHTG TE+SG  HEELVPAS GGTE  FFSP+ +  P  +
Sbjct: 61   LPSAPPSKCSFHNRVGCPCKQHTGETESSG-LHEELVPASSGGTEAIFFSPKSIPVPGSA 119

Query: 1499 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLR 1636
            KFVGS+PFSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+ Y ++R
Sbjct: 120  KFVGSYPFSFPINSNVGTTVYSLPLISTSLKDTEWGRYYRSYTFMR 165


>gb|AAR99477.1| coat protein [Strawberry latent ringspot virus]
            gi|41745996|gb|AAS10194.1| coat protein [Strawberry
            latent ringspot virus]
          Length = 165

 Score =  261 bits (667), Expect = 2e-66
 Identities = 123/166 (74%), Positives = 141/166 (84%)
 Frame = +2

Query: 1139 PLQPARLTRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAA 1318
            PLQPARLTRSASY+PI+R+G KTVLTFEDN A ++EQQP+QARASFSF+ ISYGQQDRAA
Sbjct: 1    PLQPARLTRSASYMPIRRSGAKTVLTFEDNQASLREQQPLQARASFSFSGISYGQQDRAA 60

Query: 1319 LPSPPPQKCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDS 1498
            LP  P  KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +
Sbjct: 61   LPFAPSPKCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSA 119

Query: 1499 KFVGSHPFSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYKGYRYLR 1636
            KFVGSHPFSFP+NSNVGT VYTLP+I+TSLKDTEWGR+YK Y ++R
Sbjct: 120  KFVGSHPFSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYKSYTFMR 165


>gb|AHB30925.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  245 bits (626), Expect = 9e-62
 Identities = 115/153 (75%), Positives = 130/153 (84%)
 Frame = +2

Query: 1160 TRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQ 1339
            TRSASY+PIQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAALPS PPQ
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPQ 60

Query: 1340 KCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 1519
            KC FHN+VGCPC QHTG  E SG  HEELVPAS GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCTQHTGEAEPSG-LHEELVPASSGGTEAIFFSPKSIPVPGSAKFVGSHP 119

Query: 1520 FSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYK 1618
            FSFP+NSNVGT VY+LP+I TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYSLPLISTSLKDTEWGRYYR 152


>gb|AHB30924.1| coat protein, partial [Strawberry latent ringspot virus]
            gi|560369183|gb|AHB30926.1| coat protein, partial
            [Strawberry latent ringspot virus]
          Length = 152

 Score =  243 bits (621), Expect = 3e-61
 Identities = 114/153 (74%), Positives = 131/153 (85%)
 Frame = +2

Query: 1160 TRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQ 1339
            TRSASY+PIQR+G KTVLTFEDN A ++EQQP+QARASFSF+ +SYGQQDRAALPS P  
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 1340 KCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 1519
            KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +KFVGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKFVGSHP 119

Query: 1520 FSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYK 1618
            FSFP+NSNVGT VYTLP+I+TSLKDTEWGR+Y+
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYR 152


>gb|AHB30923.1| coat protein, partial [Strawberry latent ringspot virus]
          Length = 152

 Score =  241 bits (616), Expect = 1e-60
 Identities = 114/153 (74%), Positives = 130/153 (84%)
 Frame = +2

Query: 1160 TRSASYVPIQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQ 1339
            TRSASY+PIQR+G KTVLTFEDN A ++EQQP+QARASFSF+ +SYGQQDRAALPS P  
Sbjct: 1    TRSASYMPIQRSGAKTVLTFEDNQASLREQQPLQARASFSFSGVSYGQQDRAALPSAPSP 60

Query: 1340 KCQFHNKVGCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHP 1519
            KC FHN+VGCPC QHTG  EASG  HEELVPA+ GGTE  FFSP+ +  P  +K VGSHP
Sbjct: 61   KCSFHNRVGCPCKQHTGEAEASG-LHEELVPAASGGTEAIFFSPKSIPLPGSAKSVGSHP 119

Query: 1520 FSFPVNSNVGTVVYTLPIIKTSLKDTEWGRFYK 1618
            FSFP+NSNVGT VYTLP+I+TSLKDTEWGR+YK
Sbjct: 120  FSFPINSNVGTTVYTLPLIRTSLKDTEWGRYYK 152


>gb|AEF97400.1| coat protein [Strawberry latent ringspot virus]
          Length = 148

 Score =  231 bits (590), Expect = 1e-57
 Identities = 107/147 (72%), Positives = 123/147 (83%)
 Frame = +2

Query: 1184 IQRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKV 1363
            IQR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAALPS PP KC FHN+V
Sbjct: 2    IQRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPSKCSFHNRV 61

Query: 1364 GCPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSN 1543
            GCPC QHTG TE SG  HEEL+PA+ GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSN
Sbjct: 62   GCPCKQHTGETEPSG-LHEELIPAASGGTEAIFFSPKSIPVPGGAKFVGSHPFSFPINSN 120

Query: 1544 VGTVVYTLPIIKTSLKDTEWGRFYKGY 1624
            VGT VY+LP+I TSLKDTEWGR+Y+ Y
Sbjct: 121  VGTTVYSLPLISTSLKDTEWGRYYRSY 147


>gb|AEF97401.1| coat protein [Strawberry latent ringspot virus]
          Length = 146

 Score =  230 bits (586), Expect = 4e-57
 Identities = 106/146 (72%), Positives = 122/146 (83%)
 Frame = +2

Query: 1187 QRAGTKTVLTFEDNIAQIKEQQPVQARASFSFTNISYGQQDRAALPSPPPQKCQFHNKVG 1366
            QR+G KTVLTFEDN A +KEQQP+QARASFSF+ +SYGQ DRAALPS PP KC FHN+VG
Sbjct: 1    QRSGAKTVLTFEDNQASLKEQQPLQARASFSFSGVSYGQHDRAALPSAPPSKCSFHNRVG 60

Query: 1367 CPCAQHTGSTEASGNHHEELVPASDGGTEGQFFSPQPVVHPPDSKFVGSHPFSFPVNSNV 1546
            CPC QHTG TE SG  HEEL+PA+ GGTE  FFSP+ +  P  +KFVGSHPFSFP+NSNV
Sbjct: 61   CPCKQHTGETEPSG-LHEELIPAASGGTEAIFFSPKSIPVPGGAKFVGSHPFSFPINSNV 119

Query: 1547 GTVVYTLPIIKTSLKDTEWGRFYKGY 1624
            GT VY+LP+I TSLKDTEWGR+Y+ Y
Sbjct: 120  GTTVYSLPLISTSLKDTEWGRYYRSY 145


>gb|AAY56484.1| unknown [Strawberry latent ringspot virus]
          Length = 173

 Score = 63.2 bits (152), Expect = 8e-07
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +1

Query: 3313 FLLENIPGPDGH*LGKPVNFVYHYHGSTWFIHFS 3414
            FL ENIPGPDGH LGKPVNFV HYHG+TWF  F+
Sbjct: 137  FLKENIPGPDGHLLGKPVNFVCHYHGTTWFRVFN 170