BLASTX nr result
ID: Rehmannia25_contig00032903
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00032903
(445 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera] 75 2e-19
gb|ADJ18449.1| gag/pol protein [Bryonia dioica] 73 1e-18
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 58 3e-13
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 57 7e-13
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 57 9e-13
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 57 2e-12
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 57 2e-12
ref|XP_006471604.1| PREDICTED: leucoanthocyanidin dioxygenase-li... 60 2e-12
gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-... 55 2e-12
dbj|BAA22288.1| polyprotein [Oryza australiensis] 57 3e-12
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc... 57 3e-12
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 57 4e-12
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group] 57 2e-11
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 60 3e-11
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 50 3e-11
emb|CAN70446.1| hypothetical protein VITISV_026192 [Vitis vinifera] 57 6e-11
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 52 1e-10
gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subc... 55 1e-10
gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Jap... 55 1e-10
gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subc... 51 2e-10
>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
Length = 668
Score = 74.7 bits (182), Expect(2) = 2e-19
Identities = 41/80 (51%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG M ++ KN+LL LSQA+YIDK+ + + M +SKKG L + + V LSKE+C K Q+E
Sbjct: 377 ILGIQMTRDRKNRLLALSQAAYIDKVLVKFAMENSKKGNLPSRHGVHLSKEQCPKTPQDE 436
Query: 191 KNMRRIPYAST--SIQYCVL 244
+ MRR+PYAS S+ Y +L
Sbjct: 437 EKMRRVPYASAVGSLMYAML 456
Score = 46.2 bits (108), Expect(2) = 2e-19
Identities = 19/39 (48%), Positives = 30/39 (76%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR DI +A+G+ S++ SNP + H + VK++LKY+
Sbjct: 453 YAMLCTRPDICFAVGVVSRYQSNPGLDHWVAVKHILKYL 491
>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
Length = 1292
Score = 73.2 bits (178), Expect(2) = 1e-18
Identities = 41/80 (51%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG +V+N KNK L +SQASYIDK+ Y+M +SKKG L + + LSKE+C K QE
Sbjct: 1037 ILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEV 1096
Query: 191 KNMRRIPYAST--SIQYCVL 244
++MR IPY+S S+ Y +L
Sbjct: 1097 EDMRNIPYSSAVGSLMYAML 1116
Score = 45.4 bits (106), Expect(2) = 1e-18
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR DI Y++GI S++ SNP H VKN+LKY+
Sbjct: 1113 YAMLCTRPDICYSVGIVSRYQSNPGRDHWTAVKNILKYL 1151
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 58.2 bits (139), Expect(2) = 3e-13
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG +++N K +++ LSQA YID + + M SKKG+L + +VLSK++ K +E
Sbjct: 994 ILGIKLMRNRKKRMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIVLSKDQSPKTPEEI 1053
Query: 191 KNMRRIPYAST--SIQYCVL 244
++M+ +PYAS S+ Y +L
Sbjct: 1054 ESMKAVPYASAVGSLMYAML 1073
Score = 42.4 bits (98), Expect(2) = 3e-13
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR DI +A+G+ S+F SNP H VK+++KY+
Sbjct: 1070 YAMLCTRPDIYFAVGMVSRFQSNPGREHWTAVKHIIKYL 1108
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 56.6 bits (135), Expect(2) = 7e-13
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LSQ++YIDK+ + M DSKKG+L + + L K +C + + E
Sbjct: 746 ILGIRIYKDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTNER 805
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y +L
Sbjct: 806 NKMSVIPYASAIGSIMYAML 825
Score = 42.4 bits (98), Expect(2) = 7e-13
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ YA+ SQ+ S+P H I +KN+LKY+
Sbjct: 822 YAMLCTRPDVSYALSATSQYQSDPGESHWIALKNILKYL 860
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 56.6 bits (135), Expect(2) = 9e-13
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LSQ++YIDK+ + M DSKKG+L + + L K +C + + E
Sbjct: 898 ILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDER 957
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y +L
Sbjct: 958 NKMSVIPYASAIGSIMYAML 977
Score = 42.0 bits (97), Expect(2) = 9e-13
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ YA+ S++ S+P H I VKN+LKY+
Sbjct: 974 YAMLCTRPDVSYALSATSRYQSDPGESHWIAVKNILKYL 1012
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 56.6 bits (135), Expect(2) = 2e-12
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LS+++YIDK+ + M DSKKG+L + + L+K +C + + E+
Sbjct: 950 ILGIRIYRDGSKRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNKNQCLQTTNEQ 1009
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y +L
Sbjct: 1010 NKMSVIPYASAIGSIMYAML 1029
Score = 41.2 bits (95), Expect(2) = 2e-12
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ Y + S++ S+P H I VKN+LKY+
Sbjct: 1026 YAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKYL 1064
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 56.6 bits (135), Expect(2) = 2e-12
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LS+++YIDK+ + M DSKKG+L + + L+K +C + + E+
Sbjct: 892 ILGIRIYRDGSKRLIGLSESTYIDKVLKMFNMQDSKKGFLPMSHGINLNKNQCLQTTNEQ 951
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y +L
Sbjct: 952 NKMSVIPYASAIGSIMYAML 971
Score = 41.2 bits (95), Expect(2) = 2e-12
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ Y + S++ S+P H I VKN+LKY+
Sbjct: 968 YAMLCTRPDVSYVLSATSRYQSDPSESHWIAVKNILKYL 1006
>ref|XP_006471604.1| PREDICTED: leucoanthocyanidin dioxygenase-like [Citrus sinensis]
Length = 629
Score = 60.1 bits (144), Expect(2) = 2e-12
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG ++++ KNK L LSQA YIDK+ + M +SK G L + + SK++ K S+E
Sbjct: 398 ILGIKLLRDRKNKTLALSQAVYIDKILARFSMENSKTGLLPFRHGITFSKDQSPKTSEEI 457
Query: 191 KNMRRIPYAST--SIQYCVL 244
+ MRR+PYA S+ Y +L
Sbjct: 458 ERMRRVPYAEAMGSLMYAML 477
Score = 37.4 bits (85), Expect(2) = 2e-12
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR DI +A+GI S++ NP + +K+++KY+
Sbjct: 474 YAMLCTRPDIYFAVGIVSRYQFNPGPQYWTAIKHIIKYL 512
>gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550175|gb|ABA92972.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 305
Score = 55.5 bits (132), Expect(2) = 2e-12
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ L Q++YIDK+ + M DSKKG+L + + L K +C + + E
Sbjct: 10 ILGIRIYRDRSKRLIGLRQSTYIDKVLKRFNMQDSKKGFLPMSHDINLGKNQCSQTTDER 69
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y +L
Sbjct: 70 NKMSVIPYASAIGSIMYAML 89
Score = 42.0 bits (97), Expect(2) = 2e-12
Identities = 19/39 (48%), Positives = 27/39 (69%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ YA+ S++ S+P H I VKN+LKY+
Sbjct: 86 YAMLCTRPDVSYALSATSRYQSDPGETHWIAVKNILKYL 124
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 57.4 bits (137), Expect(2) = 3e-12
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LSQ++YIDK+ + M DSKKG+L + + LSK +C + E
Sbjct: 1027 ILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDER 1086
Query: 191 KNMRRIPYAST--SIQYCVL 244
M +PYAS SI Y +L
Sbjct: 1087 NKMGMVPYASAIGSIMYAML 1106
Score = 39.7 bits (91), Expect(2) = 3e-12
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ YA+ S++ S+P H VKN+LKY+
Sbjct: 1103 YAMLCTRPDVSYALSATSRYQSDPGEGHWTAVKNILKYL 1141
>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 56.6 bits (135), Expect(2) = 3e-12
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LSQ++YIDK+ + M DSKKG+L + + L K +C + + E
Sbjct: 761 ILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDER 820
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y +L
Sbjct: 821 NKMSVIPYASAIGSIMYAML 840
Score = 40.0 bits (92), Expect(2) = 3e-12
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCT D+ YA+ S++ S+P H I VKN+LKY+
Sbjct: 837 YAMLCTHPDVSYALSATSRYQSDPGESHWIAVKNILKYL 875
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 57.4 bits (137), Expect(2) = 4e-12
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG +++N K K++ LSQA YID + + M SKKG+L + + LSK++ K +E
Sbjct: 342 ILGIKLMRNRKKKMIGLSQALYIDTILNRFNMQGSKKGFLPFRHGIXLSKDQSPKTPEEI 401
Query: 191 KNMRRIPYAST--SIQYCVL 244
++M+ +PYAS S+ Y +L
Sbjct: 402 ESMKAVPYASAVGSLMYAML 421
Score = 39.3 bits (90), Expect(2) = 4e-12
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR DI +A+G+ S+F SN H VK+++KY+
Sbjct: 418 YAMLCTRPDICFAVGMVSRFQSNXGREHWXAVKHIIKYL 456
>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 56.6 bits (135), Expect(2) = 2e-11
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LSQ++YIDK+ + M DSKKG+L + + L K +C + + E
Sbjct: 749 ILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHDINLGKNQCPQTTDER 808
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y +L
Sbjct: 809 NKMSVIPYASAIGSIMYAML 828
Score = 37.7 bits (86), Expect(2) = 2e-11
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCT D+ YA+ +++ S+P H I VKN+LKY+
Sbjct: 825 YAMLCTCPDVSYALSATNRYQSDPGESHWIAVKNILKYL 863
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 59.7 bits (143), Expect(2) = 3e-11
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ NK++ LSQ +YIDK+ + M DSKKG++ + + LSK +C E
Sbjct: 674 ILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDER 733
Query: 191 KNMRRIPYAST--SIQYCVL 244
+ M +IPYAS SI Y +L
Sbjct: 734 ERMSKIPYASAIGSIMYAML 753
Score = 33.9 bits (76), Expect(2) = 3e-11
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +L TR D+ A+ + S++ S+P H I+V+N+ KY+
Sbjct: 750 YAMLYTRPDVACALSMTSRYQSDPGESHWIVVRNIFKYL 788
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 50.1 bits (118), Expect(2) = 3e-11
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +2
Query: 29 VQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEEKNMRRI 208
+ +++ L SQ++YIDK+ + M DSKKG+L + + L K +C + + E M I
Sbjct: 657 IYRDRSRRLIGSQSTYIDKVLKRFNMQDSKKGFLPLSHGINLGKNQCPQTTDERNKMSVI 716
Query: 209 PYAST--SIQYCVL 244
PYAS SI Y +L
Sbjct: 717 PYASAIGSIMYAML 730
Score = 43.5 bits (101), Expect(2) = 3e-11
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ YA+ SQ+ S+P H I VKN+LKY+
Sbjct: 727 YAMLCTRPDVPYALSATSQYQSDPGESHWIAVKNILKYL 765
>emb|CAN70446.1| hypothetical protein VITISV_026192 [Vitis vinifera]
Length = 308
Score = 57.4 bits (137), Expect(2) = 6e-11
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Frame = +2
Query: 50 LLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEEKNMRRIPYAST-- 223
LLTLSQA+YIDK+ + Y M DSKKG+L + + LS +C K +E++ M IPYAS
Sbjct: 191 LLTLSQATYIDKILVKYVMQDSKKGFLPFKHRIPLSLNQCAKTLEEKECMELIPYASAVG 250
Query: 224 SIQYCVL 244
S+ Y +L
Sbjct: 251 SLTYLML 257
Score = 35.0 bits (79), Expect(2) = 6e-11
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCT+ I + +G+ S++ SNP H +K++LKY+
Sbjct: 254 YLMLCTKPYIFFVVGMVSRYQSNPGPKHWTTIKHILKYL 292
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 51.6 bits (122), Expect(2) = 1e-10
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LSQ YIDK+ + M +SK+G+L + + LSK +C + E
Sbjct: 607 ILGIRIYRDRSKRLIGLSQEMYIDKVLNRFNMQNSKRGFLPMAHGINLSKNQCPTTTDER 666
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y ++
Sbjct: 667 DKMSDIPYASAIGSIMYAMI 686
Score = 40.0 bits (92), Expect(2) = 1e-10
Identities = 16/39 (41%), Positives = 27/39 (69%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y ++CTR D+ YA+ + S++ ++P H VKN+LKY+
Sbjct: 683 YAMICTRPDVSYALSVTSRYQADPSEGHWTAVKNILKYL 721
>gb|ABF97078.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 649
Score = 54.7 bits (130), Expect(2) = 1e-10
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LSQ++YIDK+ + M DSKKG+L + + L K +C + + E
Sbjct: 404 ILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDER 463
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y +L
Sbjct: 464 NKMSVIPYASAIGSIVYGML 483
Score = 36.6 bits (83), Expect(2) = 1e-10
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQ---FLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ YA+ S+ ++ +P H I+VKN+LKY+
Sbjct: 480 YGMLCTRPDVSYALSATSRYQGYVPSPGESHWIVVKNILKYL 521
>gb|AAK52163.1|AC084831_17 putative polyprotein [Oryza sativa Japonica Group]
Length = 637
Score = 54.7 bits (130), Expect(2) = 1e-10
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + ++ +L+ LSQ++YIDK+ + M DSKKG+L + + L K +C + + E
Sbjct: 392 ILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDER 451
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS SI Y +L
Sbjct: 452 NKMSVIPYASAIGSIVYGML 471
Score = 36.6 bits (83), Expect(2) = 1e-10
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQ---FLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ YA+ S+ ++ +P H I+VKN+LKY+
Sbjct: 468 YGMLCTRPDVSYALSATSRYQGYVPSPGESHWIVVKNILKYL 509
>gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 51.2 bits (121), Expect(2) = 2e-10
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 11 ILGS*MVQNHKNKLLTLSQASYIDKMQLHYRM*DSKKGYLST*Y*VVLSKEECFKISQEE 190
ILG + + +L+ LSQ++YIDK+ + M SKKG+L + + L K +C + + E
Sbjct: 501 ILGIRIYRERSKRLIGLSQSTYIDKLLKRFNMQYSKKGFLPMSHGINLGKNQCPQATDER 560
Query: 191 KNMRRIPYAST--SIQYCVL 244
M IPYAS I Y +L
Sbjct: 561 NKMSVIPYASAIGCIMYAML 580
Score = 39.7 bits (91), Expect(2) = 2e-10
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +1
Query: 226 YTILCTRLDI*YAIGIASQFLSNPEIFH*IIVKNLLKYV 342
Y +LCTR D+ YA+ S++ +P H I VKN+LKY+
Sbjct: 577 YAMLCTRPDVSYALSATSRYQLDPGESHWIAVKNILKYL 615