BLASTX nr result
ID: Rehmannia25_contig00032400
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00032400
(431 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein A... 59 9e-07
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ... 43 7e-06
ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein A... 45 8e-06
ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297... 55 1e-05
ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein A... 44 1e-05
ref|XP_006464882.1| PREDICTED: putative ribonuclease H protein A... 44 1e-05
ref|XP_006493122.1| PREDICTED: putative ribonuclease H protein A... 44 1e-05
>ref|XP_004289367.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 1152
Score = 58.5 bits (140), Expect = 9e-07
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = -3
Query: 429 RNLLNMGFRYSVNDGKSIKIWQDLWIPDSMSFKPFPIPFDPSAPVWVCDLF----FSWSK 262
+ LL G R+ V +G++I +W D W+P +FKPF +P S + VC+L W+
Sbjct: 673 KELLQQGLRFQVGNGENIHLWDDPWLPLPYTFKPFSLPMHGSEGMRVCELIEEGTGGWN- 731
Query: 261 *LEYDALIDKFFTPEDASRIKSIVISSTFDKDRFV 157
+ L+++ FTP ++ I I +S +DR V
Sbjct: 732 ----EWLLEELFTPMESEIILKIPLSLNGGEDRLV 762
>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1747
Score = 42.7 bits (99), Expect(2) = 7e-06
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = -3
Query: 429 RNLLNMGFRYSVNDGKSIKIWQDLWIPDSMSFKPFPIPFDPSAPVW--VCDLFFS---WS 265
R LL G R+ + DGK ++++ D W+P SF+P AP++ V DL + W+
Sbjct: 1202 RELLRKGVRWRIGDGKEVRVFIDPWVPGLPSFRPI---LRQGAPLFLRVSDLLHNNGGWN 1258
Query: 264 K*LEYDALIDKFFTPEDASRIKSIVISSTFDKDRFV 157
++ +FT ++ I SI + +T D ++
Sbjct: 1259 M-----EALNYWFTDDECEAISSITVGATRRPDVYM 1289
Score = 32.3 bits (72), Expect(2) = 7e-06
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 151 KKGEYTIRSSYSDLIQEKIQKFKPAESSSLALNSITFWKRSWKLKVRENI 2
K G YT++S Y +E + E+ ++ L FWK WKLK+ I
Sbjct: 1294 KNGRYTVKSGYWLACEENRE-----EAINIVLAPRNFWKHLWKLKLPPKI 1338
>ref|XP_004301837.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 420
Score = 45.4 bits (106), Expect(2) = 8e-06
Identities = 24/90 (26%), Positives = 43/90 (47%)
Frame = -3
Query: 426 NLLNMGFRYSVNDGKSIKIWQDLWIPDSMSFKPFPIPFDPSAPVWVCDLFFSWSK*LEYD 247
+LL G R+ + G S+ +W D W+P +FKP+ + + V DL + D
Sbjct: 22 DLLKQGVRFQIGTGSSVSVWNDPWLPRPYTFKPYSGVMEGLEDLMVGDLIDPDTSTWMVD 81
Query: 246 ALIDKFFTPEDASRIKSIVISSTFDKDRFV 157
L+++ F ++ I+ I +S DR +
Sbjct: 82 -LLEELFYADEVEMIRKIPLSIRSPDDRLI 110
Score = 29.6 bits (65), Expect(2) = 8e-06
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 157 FEKKGEYTIRSSYSDLIQEKIQKFKPAESSSLALNSITFWKRSWKLKV 14
F+K G Y++RS Y + + + SSS S WK+ WK++V
Sbjct: 113 FDKHGLYSVRSGYH--LAGGVNADQSRGSSSSPAGSNKTWKQVWKVRV 158
>ref|XP_004296207.1| PREDICTED: uncharacterized protein LOC101297422 [Fragaria vesca
subsp. vesca]
Length = 1096
Score = 55.1 bits (131), Expect = 1e-05
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Frame = -3
Query: 429 RNLLNMGFRYSVNDGKSIKIWQDLWIPDSMSFKPFPIPFDPSAPVWVCDLF----FSWSK 262
R+LL G R+ V +G+SI +W D WIP SF+P+ P + + + VCDL W+
Sbjct: 680 RDLLKKGLRFQVGNGESISVWDDPWIPLPYSFRPYSPPMEGTEELRVCDLIDPDTGDWNV 739
Query: 261 *LEYDALIDKFFTPEDASRIKSIVISSTFDKDRFV 157
L+++ F + I I +S+ +DR V
Sbjct: 740 -----WLLNELFMGNEVDIIARIALSNGGGEDRMV 769
>ref|XP_006493121.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X1 [Citrus sinensis]
Length = 968
Score = 44.3 bits (103), Expect(2) = 1e-05
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = -3
Query: 429 RNLLNMGFRYSVNDGKSIKIWQDLWIPDSMSFKPF---PIPFDPSAPVWVCDLFFSWSK* 259
R ++ G R+ + DGK +K++Q W+P +FKP +P D + V + D W
Sbjct: 529 REVIRKGLRWRIGDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLI-DEDQCWR-- 585
Query: 258 LEYDALIDKFFTPEDASRIKSIVISSTFDKDR 163
D +I + F EDA++I I + D+
Sbjct: 586 ---DDVIRQHFHQEDAAQILKIPLPRQLSPDQ 614
Score = 30.4 bits (67), Expect(2) = 1e-05
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -2
Query: 157 FEKKGEYTIRSSYSDLIQEKIQKFKPAESSSLALNSITFWKRSWKLKVRENI 2
++KKG Y+++S Y +Q KF SSS N+ W W L++ E +
Sbjct: 619 YDKKGNYSVKSGYQLALQ---MKFPNRPSSSKEDNN--SWNSIWYLQIPEKV 665
>ref|XP_006464882.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 769
Score = 44.3 bits (103), Expect(2) = 1e-05
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = -3
Query: 429 RNLLNMGFRYSVNDGKSIKIWQDLWIPDSMSFKPF---PIPFDPSAPVWVCDLFFSWSK* 259
R ++ G R+ + DGK +K++Q W+P +FKP +P D + V + D W
Sbjct: 326 REVIRKGLRWRIGDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLI-DEDQCWR-- 382
Query: 258 LEYDALIDKFFTPEDASRIKSIVISSTFDKDR 163
D +I + F EDA++I I + D+
Sbjct: 383 ---DDVIRQHFHQEDAAQILKIPLPRQLSPDQ 411
Score = 30.4 bits (67), Expect(2) = 1e-05
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -2
Query: 157 FEKKGEYTIRSSYSDLIQEKIQKFKPAESSSLALNSITFWKRSWKLKVRENI 2
++KKG Y+++S Y +Q KF SSS N+ W W L++ E +
Sbjct: 416 YDKKGNYSVKSGYQLALQ---MKFPNRPSSSKEDNN--SWNSIWYLQIPEKV 462
>ref|XP_006493122.1| PREDICTED: putative ribonuclease H protein At1g65750-like isoform
X2 [Citrus sinensis]
Length = 765
Score = 44.3 bits (103), Expect(2) = 1e-05
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = -3
Query: 429 RNLLNMGFRYSVNDGKSIKIWQDLWIPDSMSFKPF---PIPFDPSAPVWVCDLFFSWSK* 259
R ++ G R+ + DGK +K++Q W+P +FKP +P D + V + D W
Sbjct: 326 REVIRKGLRWRIGDGKLVKVYQSGWLPRPETFKPISPPSLPLDTTVSVLI-DEDQCWR-- 382
Query: 258 LEYDALIDKFFTPEDASRIKSIVISSTFDKDR 163
D +I + F EDA++I I + D+
Sbjct: 383 ---DDVIRQHFHQEDAAQILKIPLPRQLSPDQ 411
Score = 30.4 bits (67), Expect(2) = 1e-05
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -2
Query: 157 FEKKGEYTIRSSYSDLIQEKIQKFKPAESSSLALNSITFWKRSWKLKVRENI 2
++KKG Y+++S Y +Q KF SSS N+ W W L++ E +
Sbjct: 416 YDKKGNYSVKSGYQLALQ---MKFPNRPSSSKEDNN--SWNSIWYLQIPEKV 462