BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00032368
         (394 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    56   6e-06

>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 37/128 (28%), Positives = 63/128 (49%)
 Frame = -3

Query: 389  VLSNEDGIPLLVFGRKFEYEASVLEFELRAIHVGLEITRAANLMPQIITSDSLLAIQAVI 210
            ++ +E G  ++  G+ F++  S L  EL AI VGL++     L   ++ SD L AI  + 
Sbjct: 1518 IIRDEFGSLIVAGGKNFQHPVSSLVAELLAIKVGLDLVVERRLRNIMVESDCLEAIHLLN 1577

Query: 209  DNSESLGYAVVWSSKIKKMLDSVDGCSVFHVKRSANQFAHSLACFVSFSQIPFVWENEMI 30
                 L         I+  +  V+  S++HV+R  N  AH++A FV+ +   +VW  +  
Sbjct: 1578 SKERCLAPEGGLVEDIQNTMALVNISSIYHVRREGNTAAHAIAKFVARNNGRYVWLEDG- 1636

Query: 29   SSWLKDLV 6
              WL  L+
Sbjct: 1637 PDWLMSLI 1644