BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00031974
         (404 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    82   6e-14
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ...    80   3e-13
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia...    77   2e-12
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    77   3e-12
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    75   7e-12
ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia...    74   3e-11
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta...    73   3e-11
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    73   4e-11
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    73   4e-11
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...    72   6e-11
ref|XP_006487438.1| PREDICTED: putative ribonuclease H protein A...    72   1e-10
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    72   1e-10
gb|EMJ07893.1| hypothetical protein PRUPE_ppa024911mg [Prunus pe...    71   1e-10
gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. ...    71   1e-10
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    71   1e-10
ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, part...    70   4e-10
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    70   4e-10
ref|XP_002528986.1| conserved hypothetical protein [Ricinus comm...    70   4e-10
ref|XP_002453541.1| hypothetical protein SORBIDRAFT_04g007670 [S...    69   5e-10
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    69   5e-10

>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
 Frame = +3

Query: 3    RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
            RLKI  KIKHF+W+C SG L T T++  + +  D  C+ C    ET+ HI F C  AQ V
Sbjct: 1390 RLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVV 1449

Query: 183  WKLSHVQWDGLEDYTDSFSCWWGKIC-GLKSDPCSVRRIQLTSYLLWWLWKTRNLWVFEE 359
            W+ ++        +TD+       I  G K+    +    +  +++W LWK+RN ++F++
Sbjct: 1450 WRSANFSGSNRLCFTDNLEENIRLILQGKKNQNLPILNGLMPFWIMWRLWKSRNEYLFQQ 1509


>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|3184275|gb|AAC18922.1| putative reverse transcriptase
           [Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
           H domain-containing protein [Arabidopsis thaliana]
          Length = 365

 Score = 80.1 bits (196), Expect = 3e-13
 Identities = 39/124 (31%), Positives = 70/124 (56%), Gaps = 5/124 (4%)
 Frame = +3

Query: 3   RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
           +L +  KIKHFLW+C +G L T T++  + +  D +C+ C  E ET+ HI F C   Q V
Sbjct: 39  KLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQSV 98

Query: 183 WKLSHV----QWDGLEDYTDSFSCWWGKICGL-KSDPCSVRRIQLTSYLLWWLWKTRNLW 347
           W+ +++    QW     + D+ +    ++  L K+   +     L  +++W LWK+RN++
Sbjct: 99  WRSANIIIGNQWGPPSSFEDNLN----RLIQLSKTQTTNSLDRFLPFWIMWRLWKSRNVF 154

Query: 348 VFEE 359
           +F++
Sbjct: 155 LFQQ 158


>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 48/134 (35%), Positives = 72/134 (53%), Gaps = 3/134 (2%)
 Frame = +3

Query: 3   RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
           +LK   KIKHFLWK  SG L T   + R+ ++    C  C +E ET +H+FF C  AQ+V
Sbjct: 20  KLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQQV 79

Query: 183 WKLSHVQWDGLEDYTDSFSCWWGKICGLKSDPCSVRRIQLTS---YLLWWLWKTRNLWVF 353
           W+ S +    L     +      K+  L S   + R+ QL +   ++LW LWK+RN  VF
Sbjct: 80  WRASGIPHQELRTTGITMET---KMELLLSSCLANRQPQLFNLAIWILWRLWKSRNQLVF 136

Query: 354 EEFWMPEINTVEGA 395
           ++  +   NT++ A
Sbjct: 137 QQKSISWQNTLQRA 150


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
 Frame = +3

Query: 21   KIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKVWKLSHV 200
            KI+ FLWK   G +P   ++  +G++ D+ C  C  E ET+ HI F+C  A++VW ++H+
Sbjct: 1053 KIRIFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHL 1112

Query: 201  QWDGLEDYTDSFSCWWGKICGLKSDPCSVRRIQLTS-YLLWWLWKTRNLWVFE 356
               G E +++S      ++  L         ++  S ++LW+LWK RN  +FE
Sbjct: 1113 SSAGSE-FSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFE 1164


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
 Frame = +3

Query: 21   KIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKVWKLSHV 200
            KIK FLW+  S  LP A ++ R+G+ ID  C+ CGEE E++ H+ F C  A++VW LS V
Sbjct: 1056 KIKLFLWRILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGV 1115

Query: 201  QWDGLEDYTDSFSCWWGKICGLKSDPCSVRRIQLT-SYLLWWLWKTRNLWVFEEFWMPEI 377
                      S       +  LK       +I+ +  ++LW LWK R+   FE      +
Sbjct: 1116 PTSQFGFQNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPL 1175

Query: 378  NTVE 389
             ++E
Sbjct: 1176 KSIE 1179


>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
 Frame = +3

Query: 21  KIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKVWKLSHV 200
           KI+HFLWKC S  LP A  +A + L  +  C  C    ET+ H+ FKC  A+  W +S +
Sbjct: 265 KIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSI 324

Query: 201 QWDGLEDYTDSF--SCWWGKICGLKSDPCSVRRIQLTSYLLWWLWKTRNLWVF 353
                 ++ DS   + +W    G   +P   +  QL  +LLW LWK RN  VF
Sbjct: 325 PIPLGGEWADSIYVNLYWVFNLG-NGNPQWEKASQLVPWLLWRLWKNRNELVF 376


>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1138

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
 Frame = +3

Query: 9    KIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKVWK 188
            K   KIK FLW+  S  LP A ++ R+G+ ID  C+ CG+E E+  H+ F C  A++VW 
Sbjct: 826  KSSPKIKMFLWRILSAALPVADQIIRRGMSIDPRCQICGDEGESTNHVLFTCSMARQVWA 885

Query: 189  LSHVQWDGLEDYTDSFSCWWGKICGLKS---DPCSVRRIQLTSYLLWWLWKTRNLWVFEE 359
            LS V          S       +  LK     P  V+R     ++LW LWK RN   F+ 
Sbjct: 886  LSGVPTPEFGFQNASIFANIQFLFELKKMILVPDLVKR--SWPWVLWRLWKNRNKLFFDG 943

Query: 360  FWMPEINTV 386
                 +N++
Sbjct: 944  ITFCPLNSI 952


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
 Frame = +3

Query: 3    RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
            +++   K++HFLW+  SG +P +  + ++G+  D+ C  CG   E++ H  F+C  A+++
Sbjct: 830  KVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQI 889

Query: 183  WKLSHVQ-----WDGLEDYTDSFSCWWGKICGLKSDPCSVRRIQLTSYLLWWLWKTRNLW 347
            W LS +      +     +T+    +W    G+ S P          +++W++WK RN  
Sbjct: 890  WALSQIPTAPGIFPSNSIFTNLDHLFWRIPSGVDSAP--------YPWIIWYIWKARNEK 941

Query: 348  VFE 356
            VFE
Sbjct: 942  VFE 944


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
 Frame = +3

Query: 3    RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
            +L+ + KIK FLWK  SG +P    ++ +G+K+D  C+ CG E E+++H+ F C   ++V
Sbjct: 896  KLQTEPKIKVFLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQV 955

Query: 183  WKLS--HVQWDGLEDYTDSFSCWWGKICGLKSDPCSVRRIQLTSYLLWWLWKTRNLWVFE 356
            W +S  HV   G E     ++  +  +    +    V   +   +++W +WK RNL+ FE
Sbjct: 956  WAMSNIHVPLLGFE-CGSVYANLYHFLINRDNLKWPVELRRSFPWIIWRIWKNRNLFFFE 1014


>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
 Frame = +3

Query: 3    RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
            +L I  KIK+ LW+  S  LPT +++  +G+ ID  C  C  E ET+ H+ F C  A  +
Sbjct: 1364 KLPIIPKIKYMLWRTISKALPTRSRLLTRGMDIDPHCPRCPTEEETINHVLFTCPYAASI 1423

Query: 183  WKLSHVQW-DGLEDYTDSFSCWWGKICGLKSDPCSVRRIQLTSYLLWWLWKTRNLWVFEE 359
            W LS+  W  G     D+       I    ++  +  +     +L+W LWK RN  VF +
Sbjct: 1424 WGLSNFPWLPGHTFSQDTEENISFLINSFSNNTLNTEQRLAPFWLIWRLWKARNNLVFNK 1483

Query: 360  F 362
            F
Sbjct: 1484 F 1484


>ref|XP_006487438.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 335

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 41/118 (34%), Positives = 64/118 (54%)
 Frame = +3

Query: 3   RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
           +L +  KIK F+WK    +LPTA  + ++G+  +  CK CG +VE + H+   C+ A+KV
Sbjct: 22  KLSLPEKIKIFVWKATKNLLPTAENLCKRGIVQEAHCKRCGNKVENILHVLVTCKAAKKV 81

Query: 183 WKLSHVQWDGLEDYTDSFSCWWGKICGLKSDPCSVRRIQLTSYLLWWLWKTRNLWVFE 356
           W+ S V  D +       S  +G++  L+    S    +L   LLW +W  RN +VFE
Sbjct: 82  WQRSPVA-DAVHKIDS--SNLFGELTKLQRS-LSNDDFELLLVLLWIIWYARNKFVFE 135


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
 Frame = +3

Query: 3    RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
            ++    K+KHFLWK   G LP    ++R+ ++ +  CK CG + E+  H+   C  A+KV
Sbjct: 976  KIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCG-QTESSLHLMLLCPYAKKV 1034

Query: 183  WKLSHVQWDGLEDYTDSFSCWWGKICGLKS-DPCSVRRIQLTSYLLWWLWKTRNLWVFEE 359
            W+L+ V ++  E    S +        + +  P  +    L  +LLW LWK RN  +F+ 
Sbjct: 1035 WELAPVLFNPSEATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDN 1094

Query: 360  FWMPEINTVEGALME 404
                E   V  A+++
Sbjct: 1095 HSCSEEGLVLKAILD 1109


>gb|EMJ07893.1| hypothetical protein PRUPE_ppa024911mg [Prunus persica]
          Length = 378

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
 Frame = +3

Query: 6   LKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKVW 185
           L++  KI+ F+W+C+  +L     + R+ + ++  C  CG   +T  H+FF+C+ A+  W
Sbjct: 215 LQVPPKIQMFIWRCYRNVLAVRENLRRRRVDVEADCLLCGNNGKTEVHLFFRCEIARLFW 274

Query: 186 --KLSHVQWDGLEDYTDSFSCWWGKICGLKSDPCSVRRIQLTSYLLWWLWKTRNLWVFE 356
               SH+   G+E   D  SCW   +            +Q+ ++ LW +WK RN  VFE
Sbjct: 275 FASPSHLDVHGVEG-EDFLSCWECLLQKFAQVEKMDEILQIVAFGLWRIWKWRNAVVFE 332


>gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 1555

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
 Frame = +3

Query: 3    RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
            +L    K+K F+WK   G +P   ++  + + ID  CK CG   E++ H+ F CQ AQ+V
Sbjct: 1253 KLDCAPKVKLFVWKVLKGAVPVGERLLERHIDIDPRCKRCGSN-ESITHLLFHCQFAQRV 1311

Query: 183  WKLSHV----QWDGLEDYTDSFSCWWGKICGLKS-DPCSVRRIQLTSYLLWWLWKTRNLW 347
            W L+ +     + G+ D        W  +  LK+  P  +    L  ++ W +WK RN +
Sbjct: 1312 WHLAPLATAPDFRGMIDLMAD----WPALSNLKALPPTGIASGNLVPWIFWNIWKARNRF 1367

Query: 348  VFEEFWMPEINTVEGAL 398
            VFE       +T+  A+
Sbjct: 1368 VFEGVSASPEDTLSSAI 1384


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
 Frame = +3

Query: 3    RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
            ++K   K KHF W+C SG L T  ++  + +  ++VC  CG E E++ H+ F C  ++++
Sbjct: 928  KIKTTRKFKHFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQI 987

Query: 183  WKLSHVQWD------GLEDYTDSFSCWWGKICGLKSDPCSVRRIQLTSYLLWWLWKTRNL 344
            W LS +             Y   F    GK   +  D      +++  ++LW++WK+RN 
Sbjct: 988  WALSPIPSSEYIFPRNSLFYNFDFLLSRGKEFDIAED-----IMEIFPWILWYIWKSRNR 1042

Query: 345  WVFE 356
            ++FE
Sbjct: 1043 FIFE 1046


>ref|XP_006285450.1| hypothetical protein CARUB_v10006875mg, partial [Capsella rubella]
           gi|482554155|gb|EOA18348.1| hypothetical protein
           CARUB_v10006875mg, partial [Capsella rubella]
          Length = 438

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
 Frame = +3

Query: 3   RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
           +L I  K+KHFLW+  S  +  A  + R+ + I+  C  C  + E+ EHIFF C R   +
Sbjct: 110 QLNIAPKLKHFLWRLASRAIGVADNLRRRNININPYCSWCCSDFESSEHIFFTCPRVHPI 169

Query: 183 WKLSHVQWDGLEDYTDSFSCWWGKICGLKSDPCSVRRIQLTS--YLLWWLWKTRNLWVF 353
           W++  V    L D   S       +  L +D  S+   + TS   +LW LWKTRN  VF
Sbjct: 170 WRMVGVPLTLLGDPNISLEDKLRYLFRLHND-SSLPIFKRTSPFLVLWRLWKTRNNLVF 227


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
 Frame = +3

Query: 6    LKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKVW 185
            L +  K++HFLW+  +  LP    + R+ L  +  C CC  E ET  H+F++C  + K+W
Sbjct: 1045 LNVSPKVRHFLWRACTSSLPVRKVLQRRHLIDEAGCPCCAREDETQFHLFYRCPMSLKLW 1104

Query: 186  KL--SHVQWDGLED--YTDSFSCWWGKICGLKSDPCSVRRIQLTSYLLWWLWKTRNLWVF 353
            +   S++   G+ED    D+   W              + +Q   Y+LW +W  RN  VF
Sbjct: 1105 EELGSYILLPGIEDEAMCDTLVRW---------SQMDAKVVQKGCYILWNVWVERNRRVF 1155

Query: 354  EEFWMP 371
            E    P
Sbjct: 1156 EHTSQP 1161


>ref|XP_002528986.1| conserved hypothetical protein [Ricinus communis]
           gi|223531576|gb|EEF33405.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 133

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
 Frame = +3

Query: 6   LKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKVW 185
           + +  KI  FLWK  S  L   + + ++ L +D  C+ CG   ET  H+FF C  AQ VW
Sbjct: 1   MHVPDKIDVFLWKILSNALSIGSLLVQR-LAVDGTCQRCGAW-ETSGHLFFLCPFAQYVW 58

Query: 186 KLSHVQWDGLEDYTDSFSCWWGKICG-LKSDPCSVRRIQLTSYLLWWLWKTRNLWVFEEF 362
           ++S +       +  S +  W  +C  L S        ++ ++ LW  WK RN +VF+  
Sbjct: 59  RISSLSIIPSVFHVTSITLVWDHLCATLWSFQLDQEPYKIIAHTLWQHWKARNKFVFDNH 118

Query: 363 WMPEINTVEGA 395
           W+ E + +  A
Sbjct: 119 WLQETDIISQA 129


>ref|XP_002453541.1| hypothetical protein SORBIDRAFT_04g007670 [Sorghum bicolor]
            gi|241933372|gb|EES06517.1| hypothetical protein
            SORBIDRAFT_04g007670 [Sorghum bicolor]
          Length = 982

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
 Frame = +3

Query: 3    RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
            R  +  K+K F W    G + TA +  R GL+ D+ C  C +E ET +H+   C  A++V
Sbjct: 824  RAAVPPKVKFFAWLALRGRIWTAARRRRHGLQADDSCALCDQEAETADHLLLSCVFAREV 883

Query: 183  W----KLSHVQWDGLEDYTDSFSCWWGKICGLKSDPCSVRR--IQLTSYLLWWLWKTRNL 344
            W    + +H+ W         F  WW  +   K  P  +RR    L   + W LWK RN 
Sbjct: 884  WDRLLRRAHI-WLDTPTGVSPFVDWW--LSSRKRLPRELRRGFDSLALLVAWSLWKERNR 940

Query: 345  WVFEEFWMPEINTVEGALME 404
             VF+       + V+G + E
Sbjct: 941  RVFDAAASSVDDVVKGVIAE 960


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
 Frame = +3

Query: 3    RLKIKSKIKHFLWKCFSGILPTATKVARKGLKIDEVCKCCGEEVETMEHIFFKCQRAQKV 182
            +L +  KI HFLW+C +  L  A+ +A + L  ++ C  C    ET+ H+ FKC  A+  
Sbjct: 1056 KLDVPPKIHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLT 1115

Query: 183  WKLSHVQWDGLEDYTDS-FSCWWGKICGLKSDPCSVRRIQLTSYLLWWLWKTRNLWVFE- 356
            W +S +      ++ +S F      +   KS P       L  ++LW LWK RN  VF+ 
Sbjct: 1116 WAISPLPAPPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKG 1175

Query: 357  -EFWMPEI 377
             EF  P++
Sbjct: 1176 REFTAPQV 1183