BLASTX nr result

ID: Rehmannia25_contig00031758 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00031758
         (399 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006445527.1| hypothetical protein CICLE_v10004111mg [Citr...    67   2e-09
ref|XP_003618685.1| Photosystem I assembly protein ycf3 [Medicag...    57   2e-06

>ref|XP_006445527.1| hypothetical protein CICLE_v10004111mg [Citrus clementina]
           gi|557547807|gb|ESR58767.1| hypothetical protein
           CICLE_v10004111mg [Citrus clementina]
          Length = 58

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 41/71 (57%), Positives = 41/71 (57%)
 Frame = +1

Query: 7   GSVLWGNPTPLVPMEA*GKKHYT*ESTTRKPC*KLPLSLLYWARD*KNGWDNKHPSRSYF 186
           GSVL  NPT             T ES TRK C KLP   L      KNGWDNKHPSRSY 
Sbjct: 2   GSVLQVNPT-------------TPESATRKLCYKLP-PFLSGIGTKKNGWDNKHPSRSYC 47

Query: 187 GYQYNHRRLLK 219
           GY YNHRRLLK
Sbjct: 48  GYPYNHRRLLK 58


>ref|XP_003618685.1| Photosystem I assembly protein ycf3 [Medicago truncatula]
           gi|358344504|ref|XP_003636329.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
           gi|358349399|ref|XP_003638725.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
           gi|355493700|gb|AES74903.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
           gi|355502264|gb|AES83467.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
           gi|355504660|gb|AES85863.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
          Length = 66

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +1

Query: 148 NGWDNKHPSRSYFGYQYNHRRLLK 219
           NGWDNKHPSRSYFGY YNHRRLLK
Sbjct: 43  NGWDNKHPSRSYFGYPYNHRRLLK 66


Top