BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00031246
         (402 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004237380.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-11
emb|CBI39461.3| unnamed protein product [Vitis vinifera]               72   1e-10
ref|XP_002269673.1| PREDICTED: pentatricopeptide repeat-containi...    72   1e-10
ref|XP_006350412.1| PREDICTED: pentatricopeptide repeat-containi...    70   3e-10
ref|XP_004298657.1| PREDICTED: pentatricopeptide repeat-containi...    62   1e-07
ref|XP_004136857.1| PREDICTED: pentatricopeptide repeat-containi...    62   1e-07
ref|XP_006478887.1| PREDICTED: pentatricopeptide repeat-containi...    59   5e-07
ref|XP_006443149.1| hypothetical protein CICLE_v10021498mg [Citr...    59   5e-07
gb|EOX92648.1| Uncharacterized protein TCM_046974 [Theobroma cacao]    58   1e-06
ref|XP_006418113.1| hypothetical protein EUTSA_v10007965mg [Eutr...    57   2e-06
ref|NP_849590.1| uncharacterized protein [Arabidopsis thaliana] ...    57   2e-06
ref|NP_563712.1| uncharacterized protein [Arabidopsis thaliana] ...    57   2e-06
ref|XP_002892228.1| EMB2748 [Arabidopsis lyrata subsp. lyrata] g...    57   3e-06
ref|XP_006304991.1| hypothetical protein CARUB_v10009357mg, part...    56   4e-06
ref|XP_002526313.1| conserved hypothetical protein [Ricinus comm...    55   7e-06

>ref|XP_004237380.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
           chloroplastic-like [Solanum lycopersicum]
          Length = 281

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 42/107 (39%), Positives = 64/107 (59%)
 Frame = +3

Query: 81  MSRITFIMKLARKINPLEVERALPQYSNYSTMLQSTIHRQSKEDEVEFPKNRTVNNSTSQ 260
           MS++  I  LAR+I+ L V R+     +YST +  +I  +   +      +R    S S 
Sbjct: 2   MSKLAIITTLARQISQLTVNRSSVLTCSYSTDVWHSISNRGDAETTGSLGDRFGYKSLSS 61

Query: 261 IQIKEVGTVPQLQIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
           +  K +G   + Q+G+NV RKDK+SFLV+TL+D++ +KEAVY  LDA
Sbjct: 62  LAGKPIGGNSKPQVGENVSRKDKVSFLVNTLLDLEDSKEAVYGALDA 108


>emb|CBI39461.3| unnamed protein product [Vitis vinifera]
          Length = 296

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 42/107 (39%), Positives = 60/107 (56%)
 Frame = +3

Query: 81  MSRITFIMKLARKINPLEVERALPQYSNYSTMLQSTIHRQSKEDEVEFPKNRTVNNSTSQ 260
           MS+   ++ L R+   L   R     S+YST  Q+ +   S   EV F   +  N     
Sbjct: 1   MSKSKAMVNLVRQFTQLGATRVQTLASSYSTFTQTQMSDTSNVGEVAFLGGQCNNQPMYH 60

Query: 261 IQIKEVGTVPQLQIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
              K+  +V + QIG+NV RKDKI+FLV+TL+D++ +KEAVY  LDA
Sbjct: 61  DSGKDAASVHKHQIGENVSRKDKINFLVTTLLDLKDSKEAVYGALDA 107


>ref|XP_002269673.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
           chloroplastic-like isoform 1 [Vitis vinifera]
          Length = 300

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 42/107 (39%), Positives = 60/107 (56%)
 Frame = +3

Query: 81  MSRITFIMKLARKINPLEVERALPQYSNYSTMLQSTIHRQSKEDEVEFPKNRTVNNSTSQ 260
           MS+   ++ L R+   L   R     S+YST  Q+ +   S   EV F   +  N     
Sbjct: 5   MSKSKAMVNLVRQFTQLGATRVQTLASSYSTFTQTQMSDTSNVGEVAFLGGQCNNQPMYH 64

Query: 261 IQIKEVGTVPQLQIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
              K+  +V + QIG+NV RKDKI+FLV+TL+D++ +KEAVY  LDA
Sbjct: 65  DSGKDAASVHKHQIGENVSRKDKINFLVTTLLDLKDSKEAVYGALDA 111


>ref|XP_006350412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21190-like [Solanum tuberosum]
          Length = 280

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 47/108 (43%), Positives = 66/108 (61%), Gaps = 1/108 (0%)
 Frame = +3

Query: 81  MSRITFIMKLARKINPLEVERALPQYSNYSTMLQ-STIHRQSKEDEVEFPKNRTVNNSTS 257
           MS++  I +LAR+I+ L V R      +YST ++ ST +R   E    F   R    S S
Sbjct: 2   MSKLAIITRLARQISQLTVNRTSVLTCSYSTDVRHSTSNRGDGETTGSFGY-RFGYKSLS 60

Query: 258 QIQIKEVGTVPQLQIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
            +  K +G   + Q+G+NV RKDKISFLV+TL+D++ +KEAVY  LDA
Sbjct: 61  SLAGKPIGN-SKPQVGENVSRKDKISFLVNTLLDLKDSKEAVYGALDA 107


>ref|XP_004298657.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 275

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 40/110 (36%), Positives = 56/110 (50%)
 Frame = +3

Query: 69  KSTPMSRITFIMKLARKINPLEVERALPQYSNYSTMLQSTIHRQSKEDEVEFPKNRTVNN 248
           KS PMS       L  ++  L V RA    S+YST   + ++  +        +++  N 
Sbjct: 3   KSPPMSY------LVGRLTQLGVIRAQVLTSSYSTAAHAQLYHHTTGKAAVSLEDQHSNQ 56

Query: 249 STSQIQIKEVGTVPQLQIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLD 398
                  K  G   + QIG NV RKDK++FLV TL+D+  +KEAVY TLD
Sbjct: 57  GIRHFPEKNAGGENRNQIGWNVSRKDKVNFLVKTLLDLNDSKEAVYGTLD 106


>ref|XP_004136857.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
           chloroplastic-like [Cucumis sativus]
          Length = 302

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
 Frame = +3

Query: 129 LEVERALPQYSNYSTMLQSTIHRQSKEDEVEFPKNRTVNNSTSQIQIKE--VGTVPQLQI 302
           L V R     S Y T +Q  + +Q  + +    K++ VN+S +   I E  +G + + QI
Sbjct: 28  LGVSRLQVGSSCYCTTIQDQMCQQLADKD---RKDKDVNSSKALGHISEQNIGDIRKHQI 84

Query: 303 GQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
           G+N+ RKDKI FLV+TL+D++ +KEAVY  LDA
Sbjct: 85  GKNISRKDKIHFLVNTLLDLRDSKEAVYGALDA 117


>ref|XP_006478887.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18975,
           chloroplastic-like isoform X1 [Citrus sinensis]
          Length = 288

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 27/58 (46%), Positives = 39/58 (67%)
 Frame = +3

Query: 228 KNRTVNNSTSQIQIKEVGTVPQLQIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
           + +  N S  Q   +   +    +IG+NVPRKDKI+FLV+TL+D++ +KE VY TLDA
Sbjct: 42  EGQRTNQSVDQYPERNAASTRNFRIGENVPRKDKINFLVNTLLDLKNSKEDVYGTLDA 99


>ref|XP_006443149.1| hypothetical protein CICLE_v10021498mg [Citrus clementina]
           gi|568850372|ref|XP_006478888.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g18975,
           chloroplastic-like isoform X2 [Citrus sinensis]
           gi|557545411|gb|ESR56389.1| hypothetical protein
           CICLE_v10021498mg [Citrus clementina]
          Length = 287

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 27/58 (46%), Positives = 39/58 (67%)
 Frame = +3

Query: 228 KNRTVNNSTSQIQIKEVGTVPQLQIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
           + +  N S  Q   +   +    +IG+NVPRKDKI+FLV+TL+D++ +KE VY TLDA
Sbjct: 42  EGQRTNQSVDQYPERNAASTRNFRIGENVPRKDKINFLVNTLLDLKNSKEDVYGTLDA 99


>gb|EOX92648.1| Uncharacterized protein TCM_046974 [Theobroma cacao]
          Length = 285

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 31/79 (39%), Positives = 45/79 (56%)
 Frame = +3

Query: 165 YSTMLQSTIHRQSKEDEVEFPKNRTVNNSTSQIQIKEVGTVPQLQIGQNVPRKDKISFLV 344
           YS      I +    +  +  K++  N + +      +G + + QIGQNV RKDKI FLV
Sbjct: 31  YSFAAYQAISKGQGSEAHQIVKDQGGNQAENLSSKPNIGGILKHQIGQNVSRKDKIKFLV 90

Query: 345 STLMDIQGNKEAVYSTLDA 401
           +TL+D++  KEAVY  LDA
Sbjct: 91  TTLLDLKDGKEAVYGALDA 109


>ref|XP_006418113.1| hypothetical protein EUTSA_v10007965mg [Eutrema salsugineum]
           gi|557095884|gb|ESQ36466.1| hypothetical protein
           EUTSA_v10007965mg [Eutrema salsugineum]
          Length = 372

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +3

Query: 297 QIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
           QIG+N+P+KDKI FLV+TL+DI+ NKEAVY  LDA
Sbjct: 139 QIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDA 173


>ref|NP_849590.1| uncharacterized protein [Arabidopsis thaliana]
           gi|332189598|gb|AEE27719.1| uncharacterized protein
           AT1G04590 [Arabidopsis thaliana]
          Length = 384

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +3

Query: 297 QIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
           QIG+N+P+KDKI FLV+TL+DI+ NKEAVY  LDA
Sbjct: 135 QIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDA 169


>ref|NP_563712.1| uncharacterized protein [Arabidopsis thaliana]
           gi|13430646|gb|AAK25945.1|AF360235_1 unknown protein
           [Arabidopsis thaliana] gi|14532820|gb|AAK64092.1|
           unknown protein [Arabidopsis thaliana]
           gi|332189597|gb|AEE27718.1| uncharacterized protein
           AT1G04590 [Arabidopsis thaliana]
          Length = 381

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +3

Query: 297 QIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
           QIG+N+P+KDKI FLV+TL+DI+ NKEAVY  LDA
Sbjct: 135 QIGENIPKKDKIKFLVNTLLDIEDNKEAVYGALDA 169


>ref|XP_002892228.1| EMB2748 [Arabidopsis lyrata subsp. lyrata]
           gi|297338070|gb|EFH68487.1| EMB2748 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 395

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 30/65 (46%), Positives = 41/65 (63%)
 Frame = +3

Query: 207 EDEVEFPKNRTVNNSTSQIQIKEVGTVPQLQIGQNVPRKDKISFLVSTLMDIQGNKEAVY 386
           EDE +F  +    N+          T  + QIG+N+P+KDKI FLV+TL+D++ NKEAVY
Sbjct: 115 EDEEDFSDSSKKENAE---------TPRKHQIGENIPKKDKIKFLVNTLLDMEDNKEAVY 165

Query: 387 STLDA 401
             LDA
Sbjct: 166 GALDA 170


>ref|XP_006304991.1| hypothetical protein CARUB_v10009357mg, partial [Capsella rubella]
           gi|482573702|gb|EOA37889.1| hypothetical protein
           CARUB_v10009357mg, partial [Capsella rubella]
          Length = 397

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 27/45 (60%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
 Frame = +3

Query: 270 KEVGTVPQL-QIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
           KE    P+  QIG+N+P+KDKI FLV++L+DI+ NKEAVY  LDA
Sbjct: 144 KESADTPRKHQIGENIPKKDKIKFLVNSLLDIEDNKEAVYGALDA 188


>ref|XP_002526313.1| conserved hypothetical protein [Ricinus communis]
           gi|223534394|gb|EEF36102.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 300

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
 Frame = +3

Query: 81  MSRITFIMKLARKINPLEVERALPQYSNYS-TMLQSTIHRQSKEDEVEFPKNRTVNNSTS 257
           M R      L  +++ + V R       YS TM+Q+ I  ++       P+++    +T 
Sbjct: 1   MWRSPAFSSLTGRLSQVGVARLQCSNGRYSSTMVQAQISNRNTPSPR--PEDQDDYKTTC 58

Query: 258 QIQIKEVGTVPQLQIGQNVPRKDKISFLVSTLMDIQGNKEAVYSTLDA 401
               +  G V + QIG+NV RK+KI FL+ TL+D++ +KEAVY  LDA
Sbjct: 59  HNSNQSAGGVQKNQIGKNVSRKEKIDFLLKTLLDLKDSKEAVYGALDA 106