BLASTX nr result
ID: Rehmannia25_contig00031215
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00031215
(358 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis v... 86 5e-15
emb|CBI26376.3| unnamed protein product [Vitis vinifera] 86 5e-15
ref|XP_006489536.1| PREDICTED: DNA repair protein XRCC4-like [Ci... 82 1e-13
ref|XP_006420172.1| hypothetical protein CICLE_v10007171mg, part... 82 1e-13
ref|XP_004290387.1| PREDICTED: DNA repair protein XRCC4-like iso... 82 1e-13
ref|XP_004290386.1| PREDICTED: DNA repair protein XRCC4-like iso... 80 2e-13
ref|XP_006420167.1| hypothetical protein CICLE_v10005689mg [Citr... 79 6e-13
ref|XP_006420162.1| hypothetical protein CICLE_v10005690mg [Citr... 79 8e-13
ref|XP_004241022.1| PREDICTED: DNA repair protein XRCC4-like iso... 78 1e-12
ref|XP_004241021.1| PREDICTED: DNA repair protein XRCC4-like iso... 78 1e-12
ref|XP_006350672.1| PREDICTED: DNA repair protein XRCC4-like iso... 77 2e-12
ref|XP_006350671.1| PREDICTED: DNA repair protein XRCC4-like iso... 77 2e-12
gb|EOY05932.1| DNA ligase iv-binding protein XRCC4 isoform 3 [Th... 76 4e-12
gb|EOY05931.1| DNA ligase iv-binding protein XRCC4 isoform 2 [Th... 76 4e-12
gb|EOY05930.1| DNA repair protein XRCC4, putative isoform 1 [The... 76 4e-12
ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus ... 73 3e-11
gb|EXB29874.1| DNA repair protein XRCC4 [Morus notabilis] 72 6e-11
ref|XP_004495346.1| PREDICTED: DNA repair protein XRCC4-like [Ci... 69 7e-10
ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatul... 68 1e-09
ref|XP_006378354.1| hypothetical protein POPTR_0010s08650g [Popu... 65 7e-09
>ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
Length = 259
Score = 85.9 bits (211), Expect = 5e-15
Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 5/78 (6%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSDNEA-----EQNS 127
+F+ VLNSKKAKLRELRD++SK+ T +LP++E+ESTD+T SFD+ SDNEA +N
Sbjct: 178 KFLGVLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNL 237
Query: 126 GGSSKDAPSASKPRGRKR 73
G+SK S S+PRGRKR
Sbjct: 238 TGTSKHV-STSRPRGRKR 254
>emb|CBI26376.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 85.9 bits (211), Expect = 5e-15
Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 5/78 (6%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSDNEA-----EQNS 127
+F+ VLNSKKAKLRELRD++SK+ T +LP++E+ESTD+T SFD+ SDNEA +N
Sbjct: 178 KFLGVLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNL 237
Query: 126 GGSSKDAPSASKPRGRKR 73
G+SK S S+PRGRKR
Sbjct: 238 TGTSKHV-STSRPRGRKR 254
>ref|XP_006489536.1| PREDICTED: DNA repair protein XRCC4-like [Citrus sinensis]
Length = 256
Score = 81.6 bits (200), Expect = 1e-13
Identities = 44/78 (56%), Positives = 57/78 (73%), Gaps = 5/78 (6%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSDNEAEQNS----- 127
+F+ VLNSKK+KLRELRD+LSKQA L ++EE+STD+TESFDEGSD++ +
Sbjct: 176 KFLGVLNSKKSKLRELRDKLSKQAVMGDLQQEEEQSTDKTESFDEGSDDDKSEEEPAKAI 235
Query: 126 GGSSKDAPSASKPRGRKR 73
+SK P AS+ RGRKR
Sbjct: 236 TSTSKGVP-ASRARGRKR 252
>ref|XP_006420172.1| hypothetical protein CICLE_v10007171mg, partial [Citrus clementina]
gi|557522045|gb|ESR33412.1| hypothetical protein
CICLE_v10007171mg, partial [Citrus clementina]
Length = 243
Score = 81.6 bits (200), Expect = 1e-13
Identities = 45/78 (57%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSDN-----EAEQNS 127
+F+ VLNSKK+KLRELRD+LSKQA L ++EE+STD+TESFDEGSD+ E ++
Sbjct: 163 KFLGVLNSKKSKLRELRDKLSKQAVMGDLQQEEEQSTDKTESFDEGSDDDKSEEEPAKDI 222
Query: 126 GGSSKDAPSASKPRGRKR 73
+SK P AS+ RGRKR
Sbjct: 223 TSTSKGVP-ASRARGRKR 239
>ref|XP_004290387.1| PREDICTED: DNA repair protein XRCC4-like isoform 2 [Fragaria vesca
subsp. vesca]
Length = 218
Score = 81.6 bits (200), Expect = 1e-13
Identities = 45/77 (58%), Positives = 59/77 (76%), Gaps = 3/77 (3%)
Frame = -2
Query: 294 LQFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESF---DEGSDNEAEQNSG 124
L F+ VLNSKK KLRELRD+LSKQ A +LPEQEEESTD+TE++ DE S+ ++ ++
Sbjct: 139 LSFLGVLNSKKTKLRELRDKLSKQEAAGKLPEQEEESTDKTETYVSDDENSEVDSLKDPP 198
Query: 123 GSSKDAPSASKPRGRKR 73
+SKD PS S+ +GRKR
Sbjct: 199 PTSKDIPS-SRSQGRKR 214
>ref|XP_004290386.1| PREDICTED: DNA repair protein XRCC4-like isoform 1 [Fragaria vesca
subsp. vesca]
Length = 259
Score = 80.5 bits (197), Expect = 2e-13
Identities = 44/76 (57%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESF---DEGSDNEAEQNSGG 121
+F+ VLNSKK KLRELRD+LSKQ A +LPEQEEESTD+TE++ DE S+ ++ ++
Sbjct: 181 KFLGVLNSKKTKLRELRDKLSKQEAAGKLPEQEEESTDKTETYVSDDENSEVDSLKDPPP 240
Query: 120 SSKDAPSASKPRGRKR 73
+SKD PS S+ +GRKR
Sbjct: 241 TSKDIPS-SRSQGRKR 255
>ref|XP_006420167.1| hypothetical protein CICLE_v10005689mg [Citrus clementina]
gi|557522040|gb|ESR33407.1| hypothetical protein
CICLE_v10005689mg [Citrus clementina]
Length = 256
Score = 79.0 bits (193), Expect = 6e-13
Identities = 44/79 (55%), Positives = 56/79 (70%), Gaps = 6/79 (7%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSDNEAEQNSGGSSK 112
+F+ VLNSKK+KLRELRD+LSKQA L ++EEESTD+TESFD GSD++ + +K
Sbjct: 176 KFLGVLNSKKSKLRELRDKLSKQAVMGDLQQEEEESTDKTESFDGGSDDDKSEEQ--PTK 233
Query: 111 DAPS------ASKPRGRKR 73
D S AS+ RGRKR
Sbjct: 234 DITSTSIGVPASRARGRKR 252
>ref|XP_006420162.1| hypothetical protein CICLE_v10005690mg [Citrus clementina]
gi|557522035|gb|ESR33402.1| hypothetical protein
CICLE_v10005690mg [Citrus clementina]
Length = 256
Score = 78.6 bits (192), Expect = 8e-13
Identities = 46/78 (58%), Positives = 58/78 (74%), Gaps = 5/78 (6%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSDN-----EAEQNS 127
+F+ VLNSKK+KLRELRD+LSKQA L +QEE+STD+TESFDEGSD+ E ++
Sbjct: 177 KFLGVLNSKKSKLRELRDKLSKQAVMGDL-QQEEQSTDKTESFDEGSDDDKSEEEPAKDI 235
Query: 126 GGSSKDAPSASKPRGRKR 73
+SK P AS+ RGRKR
Sbjct: 236 TSTSKGVP-ASRARGRKR 252
>ref|XP_004241022.1| PREDICTED: DNA repair protein XRCC4-like isoform 2 [Solanum
lycopersicum]
Length = 211
Score = 78.2 bits (191), Expect = 1e-12
Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 3/77 (3%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLP-EQEEESTDRTESFDEG-SDNEAEQNSGGS 118
+F+ VLN+KK KLRELRD+LSKQAT+ + P E++ +STDRTE+FDE S E E++ G+
Sbjct: 135 KFLGVLNAKKKKLRELRDKLSKQATSVEEPVEEDAQSTDRTETFDEEISGEEVEKDDVGT 194
Query: 117 SKDAPS-ASKPRGRKRK 70
SKD P+ + RGRKRK
Sbjct: 195 SKDVPARRGRGRGRKRK 211
>ref|XP_004241021.1| PREDICTED: DNA repair protein XRCC4-like isoform 1 [Solanum
lycopersicum]
Length = 254
Score = 78.2 bits (191), Expect = 1e-12
Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 3/77 (3%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLP-EQEEESTDRTESFDEG-SDNEAEQNSGGS 118
+F+ VLN+KK KLRELRD+LSKQAT+ + P E++ +STDRTE+FDE S E E++ G+
Sbjct: 178 KFLGVLNAKKKKLRELRDKLSKQATSVEEPVEEDAQSTDRTETFDEEISGEEVEKDDVGT 237
Query: 117 SKDAPS-ASKPRGRKRK 70
SKD P+ + RGRKRK
Sbjct: 238 SKDVPARRGRGRGRKRK 254
>ref|XP_006350672.1| PREDICTED: DNA repair protein XRCC4-like isoform X2 [Solanum
tuberosum]
Length = 224
Score = 77.4 bits (189), Expect = 2e-12
Identities = 45/90 (50%), Positives = 61/90 (67%), Gaps = 16/90 (17%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLP-EQEEESTDRTESFDEGSDNE--------- 142
+F+ VLNSKK KLRELRD+LSKQ TA + P E++ +STDRT++FDEGSD E
Sbjct: 135 KFLGVLNSKKKKLRELRDKLSKQGTAVEEPVEEDAQSTDRTKTFDEGSDEEMSGEEVEKE 194
Query: 141 -----AEQNSGGSSKDAPSA-SKPRGRKRK 70
++++ G+SKD P+ + RGRKRK
Sbjct: 195 DVGTSSKKDDVGTSKDVPAGRGRGRGRKRK 224
>ref|XP_006350671.1| PREDICTED: DNA repair protein XRCC4-like isoform X1 [Solanum
tuberosum]
Length = 267
Score = 77.4 bits (189), Expect = 2e-12
Identities = 45/90 (50%), Positives = 61/90 (67%), Gaps = 16/90 (17%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLP-EQEEESTDRTESFDEGSDNE--------- 142
+F+ VLNSKK KLRELRD+LSKQ TA + P E++ +STDRT++FDEGSD E
Sbjct: 178 KFLGVLNSKKKKLRELRDKLSKQGTAVEEPVEEDAQSTDRTKTFDEGSDEEMSGEEVEKE 237
Query: 141 -----AEQNSGGSSKDAPSA-SKPRGRKRK 70
++++ G+SKD P+ + RGRKRK
Sbjct: 238 DVGTSSKKDDVGTSKDVPAGRGRGRGRKRK 267
>gb|EOY05932.1| DNA ligase iv-binding protein XRCC4 isoform 3 [Theobroma cacao]
Length = 277
Score = 76.3 bits (186), Expect = 4e-12
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 6/79 (7%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSD-----NEAEQNS 127
+F+ VLNSKKAKLRELRD+LSKQ T + +EE+STD+TES+ GSD E E+N
Sbjct: 195 KFLGVLNSKKAKLRELRDQLSKQETTGKALMEEEDSTDKTESYHTGSDAEGGEEEPEKNL 254
Query: 126 GGSSKDAPSAS-KPRGRKR 73
+ KD P+A+ + RGRKR
Sbjct: 255 TSTCKDVPAAAGRGRGRKR 273
>gb|EOY05931.1| DNA ligase iv-binding protein XRCC4 isoform 2 [Theobroma cacao]
Length = 276
Score = 76.3 bits (186), Expect = 4e-12
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 6/79 (7%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSD-----NEAEQNS 127
+F+ VLNSKKAKLRELRD+LSKQ T + +EE+STD+TES+ GSD E E+N
Sbjct: 194 KFLGVLNSKKAKLRELRDQLSKQETTGKALMEEEDSTDKTESYHTGSDAEGGEEEPEKNL 253
Query: 126 GGSSKDAPSAS-KPRGRKR 73
+ KD P+A+ + RGRKR
Sbjct: 254 TSTCKDVPAAAGRGRGRKR 272
>gb|EOY05930.1| DNA repair protein XRCC4, putative isoform 1 [Theobroma cacao]
Length = 263
Score = 76.3 bits (186), Expect = 4e-12
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 6/79 (7%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSD-----NEAEQNS 127
+F+ VLNSKKAKLRELRD+LSKQ T + +EE+STD+TES+ GSD E E+N
Sbjct: 181 KFLGVLNSKKAKLRELRDQLSKQETTGKALMEEEDSTDKTESYHTGSDAEGGEEEPEKNL 240
Query: 126 GGSSKDAPSAS-KPRGRKR 73
+ KD P+A+ + RGRKR
Sbjct: 241 TSTCKDVPAAAGRGRGRKR 259
>ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4,
putative [Ricinus communis]
Length = 265
Score = 73.2 bits (178), Expect = 3e-11
Identities = 43/80 (53%), Positives = 58/80 (72%), Gaps = 7/80 (8%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLP-EQEEESTDRTESFDEG------SDNEAEQ 133
+F+ VLNSKK KLR+LRD+LSK+ + +LP E+EEESTD+TESF+E S+ E +
Sbjct: 183 KFLAVLNSKKRKLRQLRDQLSKKEASGKLPQEEEEESTDKTESFEEDSSDGDKSEEEPPE 242
Query: 132 NSGGSSKDAPSASKPRGRKR 73
G+S+D PS S+ RGRKR
Sbjct: 243 KVTGTSEDKPS-SRGRGRKR 261
>gb|EXB29874.1| DNA repair protein XRCC4 [Morus notabilis]
Length = 257
Score = 72.4 bits (176), Expect = 6e-11
Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Frame = -2
Query: 300 LLLQFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSDN-----EAE 136
L +F+ VLNSKKAKLRELR +L K A QEE STD+TESFD+GSD+ E+
Sbjct: 174 LYAKFLGVLNSKKAKLRELRAQLEKNDPAAGKLPQEEGSTDKTESFDDGSDDGKGEEESS 233
Query: 135 QNSGGSSKDAPSASKPRGRKR 73
+N G+SK A S+ RGRKR
Sbjct: 234 ENVTGTSKGA-QTSRSRGRKR 253
>ref|XP_004495346.1| PREDICTED: DNA repair protein XRCC4-like [Cicer arietinum]
Length = 255
Score = 68.9 bits (167), Expect = 7e-10
Identities = 44/79 (55%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSD----NEAEQNSG 124
+F+ VLNSKKAKLRELRD+LSKQ A + P +EE TD+TESFDE SD NE Q
Sbjct: 177 KFLGVLNSKKAKLRELRDQLSKQDNADKSP--QEEDTDKTESFDEESDNDLSNEDPQKCI 234
Query: 123 GSSKDAPSASKP-RGRKRK 70
SS A+KP R R+ K
Sbjct: 235 TSSSKKVGANKPSRSRRTK 253
>ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatula]
gi|355479842|gb|AES61045.1| DNA repair protein XRCC4
[Medicago truncatula]
Length = 256
Score = 67.8 bits (164), Expect = 1e-09
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 5/79 (6%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSDN-----EAEQNS 127
+F+ VLNSKKAKLRELRD+LSKQ + P QEEE ++TESFDE SD+ + ++
Sbjct: 177 KFLGVLNSKKAKLRELRDQLSKQGNGDKSP-QEEEDPEKTESFDEESDDGKSDEDPQKCI 235
Query: 126 GGSSKDAPSASKPRGRKRK 70
SSKDA + + R R+ +
Sbjct: 236 TSSSKDAGATKRSRPRRTR 254
>ref|XP_006378354.1| hypothetical protein POPTR_0010s08650g [Populus trichocarpa]
gi|550329385|gb|ERP56151.1| hypothetical protein
POPTR_0010s08650g [Populus trichocarpa]
Length = 257
Score = 65.5 bits (158), Expect = 7e-09
Identities = 40/79 (50%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Frame = -2
Query: 291 QFVNVLNSKKAKLRELRDRLSKQATAHQLPEQEEESTDRTESFDEGSDNE-----AEQNS 127
+F+ VLNSKK KLRELRD+LSK+ + + QEEE +D+TESFD GSD+E +
Sbjct: 178 KFLGVLNSKKRKLRELRDQLSKKEISGE-SAQEEEDSDKTESFDRGSDDEKSVEKPREKL 236
Query: 126 GGSSKDAPSASKPRGRKRK 70
G+SKD P RG RK
Sbjct: 237 AGTSKDPPPR---RGYVRK 252