BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00030453
         (382 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]   120   2e-36
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]   118   6e-35
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   115   1e-34
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   118   2e-34
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   115   5e-34
ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762...   108   5e-34
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   116   7e-34
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]   108   7e-34
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  116   9e-34
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   116   1e-33
gb|AAU90262.1| integrase core domain containing protein [Oryza s...   117   2e-33
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...   116   2e-33
gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subc...   115   3e-33
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   114   3e-33
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   113   3e-33
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc...   112   3e-33
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...   112   6e-33
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   112   6e-33
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   113   6e-33
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  113   6e-33

>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
          Length = 1262

 Score =  120 bits (301), Expect(2) = 2e-36
 Identities = 47/84 (55%), Positives = 71/84 (84%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVE+GL+L+AQ++LPL +WP+AF TAV++INR+P+++L    P+E L  ++P+Y+
Sbjct: 479 RKHRHIVELGLTLLAQASLPLKYWPDAFSTAVFLINRLPTEVLKQKCPYEFLFNSKPNYS 538

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
            L+ FGCLC+PHLR YN+HKL+F+
Sbjct: 539 QLKVFGCLCFPHLRPYNKHKLDFR 562



 Score = 57.8 bits (138), Expect(2) = 2e-36
 Identities = 24/43 (55%), Positives = 34/43 (79%)
 Frame = -1

Query: 379 KIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           K+K  Q+D GGEF +L  +F++NGI HR+SCP+T +QNG+ ER
Sbjct: 437 KLKTFQTDWGGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIER 479


>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
          Length = 1242

 Score =  118 bits (296), Expect(2) = 6e-35
 Identities = 46/84 (54%), Positives = 70/84 (83%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVE+GL+L+AQ++LPL +WP+AF T V++INR+P+++L    P+E L  ++P+Y+
Sbjct: 725 RKHRHIVELGLTLLAQASLPLKYWPDAFSTXVFLINRLPTEVLKQKCPYEFLFNSKPNYS 784

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
            L+ FGCLC+PHLR YN+HKL+F+
Sbjct: 785 QLKVFGCLCFPHLRPYNKHKLDFR 808



 Score = 54.7 bits (130), Expect(2) = 6e-35
 Identities = 23/43 (53%), Positives = 32/43 (74%)
 Frame = -1

Query: 379 KIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           K+   Q D GGEF +L  +F++NGI HR+SCP+T +QNG+ ER
Sbjct: 683 KLXTFQXDWGGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIER 725


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  115 bits (289), Expect(2) = 1e-34
 Identities = 50/84 (59%), Positives = 66/84 (78%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGL+L+AQS++PL +W  AF  AVY+INR PSK + + +P   LTG  PDY+
Sbjct: 618 RKHRHIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYS 677

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR FGC C+P+LR YN+HKL+F+
Sbjct: 678 SLRIFGCACWPNLRPYNQHKLQFR 701



 Score = 56.2 bits (134), Expect(2) = 1e-34
 Identities = 26/44 (59%), Positives = 32/44 (72%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI   QSD GGE+  L+  FK  GIHH++SCP+T QQNG AER
Sbjct: 575 RKIIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAER 618


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108708884|gb|ABF96679.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1437

 Score =  118 bits (296), Expect(2) = 2e-34
 Identities = 51/84 (60%), Positives = 69/84 (82%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGL+L+A S++PL FW EAF +AVY+INR PS++L+  SP E L G++PDY 
Sbjct: 616 RKHRHIVEVGLALLAYSSMPLKFWGEAFLSAVYLINRTPSRVLHDVSPLERLLGHKPDYN 675

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           +LR FGC C+P+LR YN+HKL+F+
Sbjct: 676 ALRVFGCACWPNLRPYNKHKLQFR 699



 Score = 52.8 bits (125), Expect(2) = 2e-34
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE+  L  FF + GI H +SCP+T QQNG AER
Sbjct: 573 RKIVAMQTDWGGEYQKLHSFFNKVGITHHVSCPHTHQQNGSAER 616


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1431

 Score =  115 bits (287), Expect(2) = 5e-34
 Identities = 49/84 (58%), Positives = 64/84 (76%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGLSL+A +++PL FW EAF  A Y+INR+PSK++ + +P E L    PDY 
Sbjct: 605 RKHRHIVEVGLSLLAHASMPLKFWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDYK 664

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR FGC C+P+LR YN HKL+F+
Sbjct: 665 SLRTFGCACWPNLRPYNTHKLQFR 688



 Score = 55.1 bits (131), Expect(2) = 5e-34
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE++ L  FF E GI H +SCP+T QQNG  ER
Sbjct: 562 RKILSMQTDWGGEYLKLHTFFNEIGISHHVSCPHTHQQNGAVER 605


>ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762311 [Setaria italica]
          Length = 866

 Score =  108 bits (271), Expect(2) = 5e-34
 Identities = 45/84 (53%), Positives = 64/84 (76%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HI+EVGL+L+A +++PL FW +AF TA Y+IN +PSK++N+  P   L G+  DY+
Sbjct: 530 RKHRHIIEVGLALLANASMPLKFWDQAFLTATYLINLLPSKVINFEIPATRLFGDTSDYS 589

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           +LR FGC C+P+LR YN HKL F+
Sbjct: 590 NLRVFGCACWPNLRPYNSHKLSFR 613



 Score = 61.2 bits (147), Expect(2) = 5e-34
 Identities = 28/44 (63%), Positives = 34/44 (77%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           KKI  +QSD GGE+  L+ FFK+ GI HR+SCP+T QQNG AER
Sbjct: 487 KKILCIQSDWGGEYEKLNSFFKKIGISHRVSCPHTHQQNGAAER 530


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1447

 Score =  116 bits (291), Expect(2) = 7e-34
 Identities = 51/84 (60%), Positives = 65/84 (77%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGL+L+A S++PL FW EAF  AVY+INR P+K+L + +P E L    PDY+
Sbjct: 618 RKHRHIVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYS 677

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR FGC C+PHLR YN HKL+F+
Sbjct: 678 SLRVFGCACWPHLRPYNTHKLQFR 701



 Score = 53.1 bits (126), Expect(2) = 7e-34
 Identities = 25/44 (56%), Positives = 31/44 (70%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +QSD GGE+  L  FF + GI H +SCP+T QQNG AER
Sbjct: 575 RKIIAMQSDWGGEYEKLHSFFTKIGITHHVSCPHTHQQNGSAER 618


>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
          Length = 1424

 Score =  108 bits (269), Expect(2) = 7e-34
 Identities = 44/84 (52%), Positives = 65/84 (77%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVE G++L+AQ++LP  +W EAF T+VY+INR+P+ +L   SP E+L   +P Y+
Sbjct: 667 RKHRHIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYS 726

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
            L+ FGC+CYP+LR +N HKL+F+
Sbjct: 727 XLKVFGCMCYPNLRPFNHHKLQFR 750



 Score = 61.6 bits (148), Expect(2) = 7e-34
 Identities = 28/43 (65%), Positives = 34/43 (79%)
 Frame = -1

Query: 379 KIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           KIK VQSD GGE+ + +++   NGI HRISCPYT +QNGLAER
Sbjct: 625 KIKAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAER 667


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  116 bits (290), Expect(2) = 9e-34
 Identities = 49/84 (58%), Positives = 64/84 (76%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HI+EVGLSL++ +++PL FW EAF  A Y+INR+PSK +  S+P E L   +PDY 
Sbjct: 618 RKHRHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPDYL 677

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR FGC C+PHLR YN HKL+F+
Sbjct: 678 SLRVFGCACWPHLRPYNTHKLQFR 701



 Score = 53.1 bits (126), Expect(2) = 9e-34
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE+  L+ FF + GI H +SCP+T QQNG AER
Sbjct: 575 RKIIAMQTDWGGEYQKLNSFFAKIGIDHHVSCPHTHQQNGSAER 618


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 1313

 Score =  116 bits (291), Expect(2) = 1e-33
 Identities = 51/84 (60%), Positives = 66/84 (78%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGLSL+A +++PL FW EAF  A Y+INR P+KILN  +PFE L   +PDY+
Sbjct: 465 RKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYS 524

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
            LR FGC+C+P+LR YN HKL+F+
Sbjct: 525 VLRIFGCVCWPNLRPYNSHKLQFR 548



 Score = 52.0 bits (123), Expect(2) = 1e-33
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  VQ+D GGE+  L+ FF + GI H +SCP+  QQNG AER
Sbjct: 422 RKILAVQTDWGGEYQRLNTFFNKIGISHLVSCPHAHQQNGSAER 465


>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
           Group] gi|108710062|gb|ABF97857.1| retrotransposon
           protein, putative, Ty1-copia subclass, expressed [Oryza
           sativa Japonica Group]
          Length = 1021

 Score =  117 bits (293), Expect(2) = 2e-33
 Identities = 50/84 (59%), Positives = 66/84 (78%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGLSL+A +++PL FW EAF TA Y+INR PSK++ YS+P E L   +P+Y+
Sbjct: 533 RKHRHIVEVGLSLLAHASMPLKFWDEAFLTATYLINRTPSKVIQYSTPLERLLNQKPNYS 592

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR FGC C+P+LR YN  KL+F+
Sbjct: 593 SLRTFGCACWPNLRPYNNRKLQFR 616



 Score = 51.2 bits (121), Expect(2) = 2e-33
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +QSD GGE+  L+  F + GI H +SCPY  QQNG AER
Sbjct: 490 RKIIAMQSDWGGEYEKLNAIFTKIGITHHVSCPYAHQQNGSAER 533


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 969

 Score =  116 bits (291), Expect(2) = 2e-33
 Identities = 51/84 (60%), Positives = 66/84 (78%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGLSL+A +++PL FW EAF  A Y+INR P+KILN  +PFE L   +PDY+
Sbjct: 465 RKHRHIVEVGLSLLAHASMPLKFWDEAFLAAAYLINRTPTKILNLDTPFERLFHKQPDYS 524

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
            LR FGC+C+P+LR YN HKL+F+
Sbjct: 525 VLRIFGCVCWPNLRPYNSHKLQFR 548



 Score = 52.0 bits (123), Expect(2) = 2e-33
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  VQ+D GGE+  L+ FF + GI H +SCP+  QQNG AER
Sbjct: 422 RKILAVQTDWGGEYQRLNTFFNKIGISHLVSCPHAHQQNGSAER 465


>gb|ABA98728.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1016

 Score =  115 bits (288), Expect(2) = 3e-33
 Identities = 48/84 (57%), Positives = 67/84 (79%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGL+L+A +++PL FW EAF  A Y+INR+PSK++ YS+P E L   +P+Y+
Sbjct: 229 RKHRHIVEVGLALLAHASVPLKFWDEAFLAATYLINRLPSKVIQYSAPLERLLDQKPNYS 288

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           +LR FGC C+P+LR YN+ KLEF+
Sbjct: 289 ALRTFGCACWPNLRPYNKRKLEFR 312



 Score = 52.4 bits (124), Expect(2) = 3e-33
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE+  L  FF + GI H +SCPY  QQNG AER
Sbjct: 186 RKIISMQTDWGGEYEKLHSFFTKIGISHHVSCPYAHQQNGSAER 229


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1256

 Score =  114 bits (286), Expect(2) = 3e-33
 Identities = 50/84 (59%), Positives = 64/84 (76%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGLSL+A ++LPL FW EA+ + VY+INR+P+K+L YSSP E L    PDY 
Sbjct: 447 RKHRHIVEVGLSLLAHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQ 506

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           +LR FGC C+P LR YN HK+ F+
Sbjct: 507 ALRTFGCACWPDLRPYNSHKMHFR 530



 Score = 52.8 bits (125), Expect(2) = 3e-33
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE+  L+ FF + GI H +SCP+T QQNG AER
Sbjct: 404 RKIISMQTDWGGEYQKLNTFFNKIGITHHVSCPHTHQQNGSAER 447


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|108706314|gb|ABF94109.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1247

 Score =  113 bits (282), Expect(2) = 3e-33
 Identities = 49/84 (58%), Positives = 64/84 (76%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVE+GL+L+A S++PL FW EAF +AVY+INR PS++L Y++P E L    PDY 
Sbjct: 416 RKHRHIVEMGLALLAYSSMPLKFWDEAFTSAVYLINRTPSRLLKYATPLERLFKQTPDYN 475

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
            LR FGC C+PHLR YN  KL+F+
Sbjct: 476 LLRVFGCACWPHLRPYNARKLQFR 499



 Score = 54.3 bits (129), Expect(2) = 3e-33
 Identities = 25/44 (56%), Positives = 32/44 (72%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +QSD GGE+  L+ FF + GI H +SCP+T QQNG AER
Sbjct: 373 RKILAMQSDWGGEYEKLNSFFTKIGITHHVSCPHTHQQNGSAER 416


>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1145

 Score =  112 bits (280), Expect(2) = 3e-33
 Identities = 46/84 (54%), Positives = 66/84 (78%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVEVGLSL++ +++PL FW EAF  A Y+INR+PS+++  ++P E     +PDY+
Sbjct: 488 RKHRHIVEVGLSLLSHAHMPLKFWDEAFQAATYLINRVPSRVIQNTTPLEKFFHQKPDYS 547

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR FGC C+P+LR YN+HKL+F+
Sbjct: 548 SLRVFGCACWPNLRPYNKHKLQFR 571



 Score = 55.1 bits (131), Expect(2) = 3e-33
 Identities = 25/44 (56%), Positives = 33/44 (75%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE+ AL+ FF + GI H +SCP+T QQNG AER
Sbjct: 445 RKILAMQTDWGGEYRALNSFFSKIGIVHHVSCPHTHQQNGSAER 488


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1478

 Score =  112 bits (281), Expect(2) = 6e-33
 Identities = 47/84 (55%), Positives = 66/84 (78%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVE+GLSL++ +++PL FW EAF  A Y+INR+PS++++  SP E L   +PDY+
Sbjct: 645 RKHRHIVEIGLSLLSHASMPLKFWDEAFQAATYLINRVPSRVIHNISPLEKLFKQKPDYS 704

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR FGC C+P+LR YN HKL+F+
Sbjct: 705 SLRIFGCACWPNLRPYNNHKLQFR 728



 Score = 53.9 bits (128), Expect(2) = 6e-33
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE+ +L+ FF + GI H +SCP+T QQNG AER
Sbjct: 602 RKILAMQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAER 645


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score =  112 bits (281), Expect(2) = 6e-33
 Identities = 47/84 (55%), Positives = 66/84 (78%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HIVE+GLSL++ +++PL FW EAF  A Y+INR+PS++++  SP E L   +PDY+
Sbjct: 612 RKHRHIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYS 671

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR FGC C+P+LR YN HKL+F+
Sbjct: 672 SLRIFGCACWPNLRPYNNHKLQFR 695



 Score = 53.9 bits (128), Expect(2) = 6e-33
 Identities = 24/44 (54%), Positives = 33/44 (75%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE+ +L+ FF + GI H +SCP+T QQNG AER
Sbjct: 569 RKILAMQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAER 612


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
           sativa Japonica Group]
          Length = 1448

 Score =  113 bits (282), Expect(2) = 6e-33
 Identities = 48/84 (57%), Positives = 63/84 (75%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HI+EVGLSL++ +++PL FW EAF  A Y+INRIPSK +  S+P E L   +PDY+
Sbjct: 621 RKHKHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYS 680

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR F C C+PHL  YN HKL+F+
Sbjct: 681 SLRVFSCTCWPHLHPYNTHKLQFR 704



 Score = 53.5 bits (127), Expect(2) = 6e-33
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE+  L+ FF + GI H +SCP+T QQNG AER
Sbjct: 578 RKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAER 621


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  113 bits (282), Expect(2) = 6e-33
 Identities = 48/84 (57%), Positives = 63/84 (75%)
 Frame = -3

Query: 254 KKHIHIVEVGLSLIAQSNLPLTFWPEAFCTAVYIINRIPSKILNYSSPFELLTGNRPDYT 75
           +KH HI+EVGLSL++ +++PL FW EAF  A Y+INRIPSK +  S+P E L   +PDY+
Sbjct: 621 RKHKHIIEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYS 680

Query: 74  SLRAFGCLCYPHLRSYNRHKLEFK 3
           SLR F C C+PHL  YN HKL+F+
Sbjct: 681 SLRVFSCTCWPHLHPYNTHKLQFR 704



 Score = 53.5 bits (127), Expect(2) = 6e-33
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = -1

Query: 382 KKIKMVQSDRGGEFIALSKFFKENGIHHRISCPYTPQQNGLAER 251
           +KI  +Q+D GGE+  L+ FF + GI H +SCP+T QQNG AER
Sbjct: 578 RKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAER 621