BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00029494
         (545 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG22121.1| polyprotein [Solanum melongena]                        174   3e-62
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc...   134   4e-55
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   127   1e-51
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           127   1e-51
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   127   1e-51
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   123   1e-50
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   132   2e-49
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     117   1e-48
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]   120   3e-48
gb|AFB73911.1| polyprotein [Citrus sinensis]                          114   2e-47
gb|AFB73912.1| polyprotein [Citrus sinensis]                          115   2e-47
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]        110   6e-47
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        115   8e-47
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              110   2e-46
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              110   3e-46
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              110   3e-46
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         107   5e-46
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              108   8e-46
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   105   1e-45
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  112   1e-45

>gb|ABG22121.1| polyprotein [Solanum melongena]
          Length = 361

 Score =  174 bits (442), Expect(2) = 3e-62
 Identities = 83/102 (81%), Positives = 96/102 (94%)
 Frame = +3

Query: 240 KYTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEA 419
           +YTRSKYDHCVY  KLQ+GS++YLLLYVDDMLIA++SQ EID+LKAQL++EFEMKDLGEA
Sbjct: 60  RYTRSKYDHCVYFHKLQNGSYVYLLLYVDDMLIAAKSQFEIDRLKAQLSKEFEMKDLGEA 119

Query: 420 KKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
           KKILGMEISRDR  GKLCLTQKQYLKKVLQRFG+ +++KPVS
Sbjct: 120 KKILGMEISRDRQRGKLCLTQKQYLKKVLQRFGINDDSKPVS 161



 Score = 90.1 bits (222), Expect(2) = 3e-62
 Identities = 43/57 (75%), Positives = 47/57 (82%)
 Frame = +1

Query: 61  DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFM 231
           DVKTAF HGDL+EEIY    +G KVA KENWVCKL KSLY +KQS RQWYK+FDKFM
Sbjct: 1   DVKTAFFHGDLKEEIYYDFSQGIKVASKENWVCKLNKSLY-MKQSSRQWYKQFDKFM 56


>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 983

 Score =  134 bits (336), Expect(2) = 4e-55
 Identities = 71/102 (69%), Positives = 86/102 (84%)
 Frame = +3

Query: 240  KYTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEA 419
            K+ RS YD+CVYL K+ DGS IYLLLYVDDMLIA++ + EI+KLKAQL+ EFEMKDLG A
Sbjct: 730  KFRRSNYDNCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAA 788

Query: 420  KKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KKILGMEI+R+R SGKL L+QK Y++KVL+RF M  + KPVS
Sbjct: 789  KKILGMEITRERHSGKLYLSQKGYIEKVLRRFNM-HDAKPVS 829



 Score =  107 bits (266), Expect(2) = 4e-55
 Identities = 53/86 (61%), Positives = 59/86 (68%)
 Frame = +1

Query: 1   SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
           SSIR                DVKTAFLHG+LEE+IYM QPEGF V GKEN VC+L KSLY
Sbjct: 650 SSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLY 709

Query: 181 GLKQSPRQWYKRFDKFMMGRSTHGAN 258
           GLKQSPRQWYKRFD FM+ +    +N
Sbjct: 710 GLKQSPRQWYKRFDSFMLSQKFRRSN 735


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  127 bits (318), Expect(2) = 1e-51
 Identities = 68/101 (67%), Positives = 82/101 (81%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            + RSKYD CVY++ + +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AK
Sbjct: 990  FKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAK 1048

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KILGMEISRDR SG L L+Q  Y+KKVLQRF M +N K VS
Sbjct: 1049 KILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVS 1088



 Score =  102 bits (254), Expect(2) = 1e-51
 Identities = 51/81 (62%), Positives = 56/81 (69%)
 Frame = +1

Query: 1    SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
            SSIR                DVKTAFLHG+LEE+IYM QPEGF V GKE +VCKL +SLY
Sbjct: 909  SSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLY 968

Query: 181  GLKQSPRQWYKRFDKFMMGRS 243
            GLKQSPRQW KRFD FM+  S
Sbjct: 969  GLKQSPRQWNKRFDSFMLSHS 989


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  127 bits (318), Expect(2) = 1e-51
 Identities = 68/101 (67%), Positives = 82/101 (81%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            + RSKYD CVY++ + +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AK
Sbjct: 992  FKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAK 1050

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KILGMEISRDR SG L L+Q  Y+KKVLQRF M +N K VS
Sbjct: 1051 KILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVS 1090



 Score =  102 bits (254), Expect(2) = 1e-51
 Identities = 51/81 (62%), Positives = 56/81 (69%)
 Frame = +1

Query: 1    SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
            SSIR                DVKTAFLHG+LEE+IYM QPEGF V GKE +VCKL +SLY
Sbjct: 911  SSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLY 970

Query: 181  GLKQSPRQWYKRFDKFMMGRS 243
            GLKQSPRQW KRFD FM+  S
Sbjct: 971  GLKQSPRQWNKRFDSFMLSHS 991


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  127 bits (318), Expect(2) = 1e-51
 Identities = 68/101 (67%), Positives = 82/101 (81%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            + RSKYD CVY++ + +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AK
Sbjct: 990  FKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAK 1048

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KILGMEISRDR SG L L+Q  Y+KKVLQRF M +N K VS
Sbjct: 1049 KILGMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVS 1088



 Score =  102 bits (254), Expect(2) = 1e-51
 Identities = 51/81 (62%), Positives = 56/81 (69%)
 Frame = +1

Query: 1    SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
            SSIR                DVKTAFLHG+LEE+IYM QPEGF V GKE +VCKL +SLY
Sbjct: 909  SSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLY 968

Query: 181  GLKQSPRQWYKRFDKFMMGRS 243
            GLKQSPRQW KRFD FM+  S
Sbjct: 969  GLKQSPRQWNKRFDSFMLSHS 989


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  123 bits (309), Expect(2) = 1e-50
 Identities = 67/101 (66%), Positives = 81/101 (80%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            + RSKYD CVY++ + +GS IYLLLYVDDMLIA++S++EI KLK  L+ EF+MKDLG AK
Sbjct: 990  FKRSKYDSCVYIKHV-NGSPIYLLLYVDDMLIAAKSKIEITKLKKLLSSEFDMKDLGSAK 1048

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KIL MEISRDR SG L L+Q  Y+KKVLQRF M +N K VS
Sbjct: 1049 KILVMEISRDRKSGLLFLSQHNYIKKVLQRFNM-QNAKAVS 1088



 Score =  102 bits (254), Expect(2) = 1e-50
 Identities = 51/81 (62%), Positives = 56/81 (69%)
 Frame = +1

Query: 1    SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
            SSIR                DVKTAFLHG+LEE+IYM QPEGF V GKE +VCKL +SLY
Sbjct: 909  SSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQPEGFIVPGKEKYVCKLKRSLY 968

Query: 181  GLKQSPRQWYKRFDKFMMGRS 243
            GLKQSPRQW KRFD FM+  S
Sbjct: 969  GLKQSPRQWNKRFDSFMLSHS 989


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  132 bits (331), Expect(2) = 2e-49
 Identities = 67/104 (64%), Positives = 84/104 (80%)
 Frame = +3

Query: 234  GAKYTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLG 413
            G KYTRS YD CVY +K    ++IYLLLYVDDMLIAS ++ E+++LK  L++EFEMKDLG
Sbjct: 986  GIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLG 1045

Query: 414  EAKKILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            +AKKILGMEISRDR +G L L+Q+ Y+KKVL+ F M +N KPVS
Sbjct: 1046 DAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSFQM-DNAKPVS 1088



 Score = 90.1 bits (222), Expect(2) = 2e-49
 Identities = 43/59 (72%), Positives = 47/59 (79%)
 Frame = +1

Query: 61   DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMG 237
            DVKTAFLHG LEEEIYM QPEGF++    N VC L +SLYGLKQSPRQW  RFD+FM G
Sbjct: 928  DVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRG 986


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  117 bits (293), Expect(2) = 1e-48
 Identities = 56/95 (58%), Positives = 72/95 (75%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            YTR +YD CVY    +DG  I LLLYVDDMLIA +  L+I KLK +L  EF+MKDLG A+
Sbjct: 955  YTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDLGAAQ 1014

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTE 527
            KILG+EI RDR +GK+ L+Q++Y+ K+L+RF M E
Sbjct: 1015 KILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAE 1049



 Score =  101 bits (252), Expect(2) = 1e-48
 Identities = 49/78 (62%), Positives = 56/78 (71%)
 Frame = +1

Query: 1    SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
            +SIR+               DVKTAFLHGDLEE+IYM+QPEGF   GKEN VC+L KSLY
Sbjct: 874  TSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLY 933

Query: 181  GLKQSPRQWYKRFDKFMM 234
            GLKQSPRQWYK FD +M+
Sbjct: 934  GLKQSPRQWYKPFDTYML 951


>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
          Length = 939

 Score =  120 bits (300), Expect(2) = 3e-48
 Identities = 58/93 (62%), Positives = 77/93 (82%)
 Frame = +3

Query: 243 YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
           Y+RSK+D+CVY+RKL +GS++YLLLYVDDML+AS+S  EI  LK QL  EFEMKDLG AK
Sbjct: 631 YSRSKFDNCVYMRKLTNGSYVYLLLYVDDMLLASKSITEIAHLKTQLQSEFEMKDLGCAK 690

Query: 423 KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGM 521
           KILG+E  RDR++G L ++Q+ Y+++VL+ F M
Sbjct: 691 KILGIEPYRDRSTGILTISQRDYIERVLKIFNM 723



 Score = 97.8 bits (242), Expect(2) = 3e-48
 Identities = 49/77 (63%), Positives = 55/77 (71%)
 Frame = +1

Query: 1   SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
           +SIR+               DV  AFLHG+LEEEI+M QP+GF V GKEN VC L +SLY
Sbjct: 550 TSIRVLLALVSLWNLELXQMDVNRAFLHGELEEEIFMQQPKGFIVKGKENQVCLLKRSLY 609

Query: 181 GLKQSPRQWYKRFDKFM 231
           GLKQSPRQWYKRFDKFM
Sbjct: 610 GLKQSPRQWYKRFDKFM 626


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  114 bits (286), Expect(2) = 2e-47
 Identities = 55/95 (57%), Positives = 70/95 (73%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y R   DHC Y ++ +D  FI LLLYVDDML+A  ++  I +LKAQL +EFEMKDLG A 
Sbjct: 964  YNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPAN 1023

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTE 527
            KILGM+I RDR + K+ L+QK YLKK+L+RF M +
Sbjct: 1024 KILGMQIHRDRNNMKIWLSQKNYLKKILRRFNMQD 1058



 Score =  100 bits (250), Expect(2) = 2e-47
 Identities = 46/58 (79%), Positives = 50/58 (86%)
 Frame = +1

Query: 61   DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMM 234
            DVKTAFLHG+LEEEIYM QPEGF   GKEN VC+L KSLYGLKQ+PR WYKRFD F+M
Sbjct: 903  DVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIM 960


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  115 bits (287), Expect(2) = 2e-47
 Identities = 55/95 (57%), Positives = 70/95 (73%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y R   DHC Y ++ +D  FI LLLYVDDML+A  ++  I +LKAQL +EFEMKDLG A 
Sbjct: 964  YNRLSSDHCAYYKRFEDNDFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPAN 1023

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTE 527
            KILGM+I RDR + K+ L+QK YLKK+L+RF M +
Sbjct: 1024 KILGMQIHRDRNNRKIWLSQKNYLKKILRRFNMQD 1058



 Score =  100 bits (248), Expect(2) = 2e-47
 Identities = 46/58 (79%), Positives = 50/58 (86%)
 Frame = +1

Query: 61   DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMM 234
            DVKTAFLHG+LEEEIYM QPEGF   GKEN VC+L KSLYGLKQ+PR WYKRFD F+M
Sbjct: 903  DVKTAFLHGELEEEIYMLQPEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIM 960


>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
          Length = 576

 Score =  110 bits (274), Expect(2) = 6e-47
 Identities = 59/98 (60%), Positives = 76/98 (77%)
 Frame = +3

Query: 252 SKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAKKIL 431
           S++D CVY+ K  +GS IYLLLYVDDMLIA++S+ +I  LK QL+ EF+MKDLG AKKIL
Sbjct: 315 SEFDSCVYI-KFVNGSPIYLLLYVDDMLIAAKSKEQITTLKKQLSSEFDMKDLGAAKKIL 373

Query: 432 GMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
           GMEI+RD   G L L+Q+ Y+KKVL+ F M  + KP+S
Sbjct: 374 GMEITRDINFGLLFLSQQSYIKKVLEHFNM-HDAKPIS 410



 Score =  103 bits (257), Expect(2) = 6e-47
 Identities = 52/84 (61%), Positives = 59/84 (70%)
 Frame = +1

Query: 1   SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
           SSIR                DVKT FLHG+LE+EIYM QPEGF V GKE++VCKL +SLY
Sbjct: 231 SSIRTFFSIVAMDDLELKQLDVKTTFLHGELEDEIYMDQPEGFIVPGKEDYVCKLKRSLY 290

Query: 181 GLKQSPRQWYKRFDKFMMGRSTHG 252
           GLKQSPRQWYKRFD FM+   +HG
Sbjct: 291 GLKQSPRQWYKRFDSFML---SHG 311


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  115 bits (288), Expect(2) = 8e-47
 Identities = 60/100 (60%), Positives = 75/100 (75%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y RS+YD CVY      G   YLLLYVDDMLIAS+ + EI++LK  L  EFEMKDLG AK
Sbjct: 987  YRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIERLKNLLKAEFEMKDLGNAK 1046

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPV 542
            +ILGM+I RDR++G L L+Q +Y+KKVL+RF M ++ KPV
Sbjct: 1047 RILGMDIIRDRSAGTLFLSQGKYIKKVLERFEM-QDCKPV 1085



 Score = 97.8 bits (242), Expect(2) = 8e-47
 Identities = 48/80 (60%), Positives = 56/80 (70%)
 Frame = +1

Query: 1    SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
            SSIRI               DVKTAFLHG+LEE+I M QPEGF+   KE++VC L KSLY
Sbjct: 906  SSIRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLY 965

Query: 181  GLKQSPRQWYKRFDKFMMGR 240
            GLKQSPRQWY+RFD FM+ +
Sbjct: 966  GLKQSPRQWYRRFDDFMVSK 985


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  110 bits (275), Expect(2) = 2e-46
 Identities = 54/101 (53%), Positives = 72/101 (71%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y+R   DHC Y ++     FI LLLYVDDML+   ++  + +LKAQL +EF+MKDLG A 
Sbjct: 960  YSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ KP+S
Sbjct: 1020 KILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM-QDCKPIS 1059



 Score =  101 bits (251), Expect(2) = 2e-46
 Identities = 46/58 (79%), Positives = 51/58 (87%)
 Frame = +1

Query: 61   DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMM 234
            DVKTAFLHG+LEEEIYM QPEGFK  GKEN VC+L KSLYGLKQ+PR WYKRFD F++
Sbjct: 899  DVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFII 956


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  110 bits (274), Expect(2) = 3e-46
 Identities = 54/101 (53%), Positives = 71/101 (70%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y R   DHC Y ++     FI LLLYVDDML+   ++  + +LKAQL +EF+MKDLG A 
Sbjct: 960  YNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ KP+S
Sbjct: 1020 KILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM-QDCKPIS 1059



 Score =  101 bits (251), Expect(2) = 3e-46
 Identities = 46/58 (79%), Positives = 51/58 (87%)
 Frame = +1

Query: 61   DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMM 234
            DVKTAFLHG+LEEEIYM QPEGFK  GKEN VC+L KSLYGLKQ+PR WYKRFD F++
Sbjct: 899  DVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFII 956


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  110 bits (274), Expect(2) = 3e-46
 Identities = 54/101 (53%), Positives = 72/101 (71%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y+R   DHC Y ++     FI LLLYVDDML+   ++  + +LKAQL +EF+MKDLG A 
Sbjct: 960  YSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ KP+S
Sbjct: 1020 KILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNM-QDCKPIS 1059



 Score =  101 bits (251), Expect(2) = 3e-46
 Identities = 46/58 (79%), Positives = 51/58 (87%)
 Frame = +1

Query: 61   DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMM 234
            DVKTAFLHG+LEEEIYM QPEGFK  GKEN VC+L KSLYGLKQ+PR WYKRFD F++
Sbjct: 899  DVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFII 956


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  107 bits (266), Expect(2) = 5e-46
 Identities = 52/101 (51%), Positives = 74/101 (73%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y ++  DHCV++ +  D  F+ LLLYVDDMLI  ++   I +LK +L++ F MKD+G AK
Sbjct: 981  YKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNASRIQELKQELSKSFSMKDMGPAK 1040

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            +ILGM+I RDR + KL L+Q++Y++KVL+RF M E  KPVS
Sbjct: 1041 QILGMKIIRDRQNKKLWLSQEKYIEKVLERFHMNE-AKPVS 1080



 Score =  103 bits (257), Expect(2) = 5e-46
 Identities = 52/84 (61%), Positives = 59/84 (70%)
 Frame = +1

Query: 1    SSIRIXXXXXXXXXXXXXXXDVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLY 180
            SSIR+               DVKTAFLHGDL+EEIYM QPEGFKV GKE++VC+L KSLY
Sbjct: 900  SSIRVVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSLY 959

Query: 181  GLKQSPRQWYKRFDKFMMGRSTHG 252
            GLKQ+PRQWYK+F   M   S HG
Sbjct: 960  GLKQAPRQWYKKFTSVM---SKHG 980


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  108 bits (270), Expect(2) = 8e-46
 Identities = 53/101 (52%), Positives = 71/101 (70%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y R   DHC Y ++     FI LLLYVDD+L+   ++  + +LKAQL +EF+MKDLG A 
Sbjct: 960  YNRLSSDHCTYYKRFDGNDFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++ KP+S
Sbjct: 1020 KILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNM-QDCKPIS 1059



 Score =  101 bits (251), Expect(2) = 8e-46
 Identities = 46/58 (79%), Positives = 51/58 (87%)
 Frame = +1

Query: 61   DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMM 234
            DVKTAFLHG+LEEEIYM QPEGFK  GKEN VC+L KSLYGLKQ+PR WYKRFD F++
Sbjct: 899  DVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFII 956


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  105 bits (262), Expect(2) = 1e-45
 Identities = 53/101 (52%), Positives = 76/101 (75%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y ++  D CVY ++  + +FI LLLYVDDMLI  + +  I KLK  L++ F+MKDLG A+
Sbjct: 983  YLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQ 1042

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            +ILGM+I R+RTS KL L+Q++Y+++VL+RF M +N KPVS
Sbjct: 1043 QILGMKIVRERTSRKLWLSQEKYIERVLERFNM-KNAKPVS 1082



 Score =  103 bits (258), Expect(2) = 1e-45
 Identities = 47/61 (77%), Positives = 54/61 (88%)
 Frame = +1

Query: 61   DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMMGR 240
            DVKTAFLHGDLEEEIYM QPEGF+VAGK++ VCKL KSLYGLKQ+PRQWY +FD FM  +
Sbjct: 922  DVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQ 981

Query: 241  S 243
            +
Sbjct: 982  T 982


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  112 bits (280), Expect(2) = 1e-45
 Identities = 55/101 (54%), Positives = 72/101 (71%)
 Frame = +3

Query: 243  YTRSKYDHCVYLRKLQDGSFIYLLLYVDDMLIASQSQLEIDKLKAQLNQEFEMKDLGEAK 422
            Y R   DHC Y ++  DG FI LLLYVDDML+   ++  + +LKAQL +EF+MKDLG A 
Sbjct: 960  YNRLSSDHCTYYKRFDDGDFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPAN 1019

Query: 423  KILGMEISRDRTSGKLCLTQKQYLKKVLQRFGMTENTKPVS 545
            KILGM+I RDR   K+ L+QK YL+KVL+RF M ++  P+S
Sbjct: 1020 KILGMQIHRDRKDRKIWLSQKNYLQKVLRRFNM-QDYNPIS 1059



 Score = 97.1 bits (240), Expect(2) = 1e-45
 Identities = 44/58 (75%), Positives = 50/58 (86%)
 Frame = +1

Query: 61   DVKTAFLHGDLEEEIYMTQPEGFKVAGKENWVCKLIKSLYGLKQSPRQWYKRFDKFMM 234
            DVKTAFLHG+LEEEIYM QPEGF+   +EN VC+L KSLYGLKQ+PR WYKRFD F+M
Sbjct: 899  DVKTAFLHGELEEEIYMLQPEGFEEKERENLVCRLTKSLYGLKQAPRCWYKRFDSFIM 956