BLASTX nr result
ID: Rehmannia25_contig00028554
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00028554
(448 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlise... 207 2e-51
emb|CBI16226.3| unnamed protein product [Vitis vinifera] 195 5e-48
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s... 195 5e-48
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s... 195 6e-48
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s... 194 1e-47
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s... 194 1e-47
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao] 185 5e-45
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu... 173 2e-41
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [... 171 7e-41
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s... 169 3e-40
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr... 169 3e-40
ref|XP_004505924.1| PREDICTED: DNA-directed RNA polymerase III s... 155 4e-36
ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III s... 155 4e-36
gb|EMJ09344.1| hypothetical protein PRUPE_ppa024521mg, partial [... 154 9e-36
gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus... 151 1e-34
ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arab... 150 2e-34
dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Ar... 147 1e-33
ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thali... 147 1e-33
ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana... 147 1e-33
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s... 147 1e-33
>gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlisea aurea]
Length = 1368
Score = 207 bits (526), Expect = 2e-51
Identities = 98/149 (65%), Positives = 124/149 (83%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGN 181
K+CN+ AGS + KC RCG+INGMVKRAP ++ +DR +V+D+ ++ECQSA K RGN
Sbjct: 148 KRCNSKAGSNKLAKCPRCGHINGMVKRAPYKVMYDRGRVIDSQMEECQSAGPSMKASRGN 207
Query: 182 ANVSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQS 361
+ST+D ++LL+NMLDEDCELLY++DRPEKL+VTNILVPP AIRPSVFVDGGTQS
Sbjct: 208 T--TSTLDALFVFRLLRNMLDEDCELLYIHDRPEKLMVTNILVPPTAIRPSVFVDGGTQS 265
Query: 362 NENDITERLKRIIQANASLRQEMLETNLH 448
NENDITERLK II+ANA+L Q++LETN++
Sbjct: 266 NENDITERLKYIIEANANLSQQLLETNIY 294
>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 195 bits (496), Expect = 5e-48
Identities = 97/148 (65%), Positives = 119/148 (80%), Gaps = 2/148 (1%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYR 175
+KC AMA SK+AVKCSRCGY+NG+VK+A L I HDR+K+ D L+EC SAISHTKE +
Sbjct: 152 QKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGIIHDRSKIADGSLEECSSAISHTKESK 211
Query: 176 GNANVSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGT 355
+ +V ++P L K M+DEDC+LL L +RPEKL++TNI VPPIAIRPSVF+DGGT
Sbjct: 212 ASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAERPEKLVLTNIGVPPIAIRPSVFMDGGT 271
Query: 356 QSNENDITERLKRIIQANASLRQEMLET 439
QSNEND+TERLKRIIQANASL QE+ +T
Sbjct: 272 QSNENDVTERLKRIIQANASLHQELQDT 299
>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 195 bits (496), Expect = 5e-48
Identities = 97/148 (65%), Positives = 119/148 (80%), Gaps = 2/148 (1%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYR 175
+KC AMA SK+AVKCSRCGY+NG+VK+A L I HDR+K+ D L+EC SAISHTKE +
Sbjct: 152 QKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLGIIHDRSKIADGSLEECSSAISHTKESK 211
Query: 176 GNANVSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGT 355
+ +V ++P L K M+DEDC+LL L +RPEKL++TNI VPPIAIRPSVF+DGGT
Sbjct: 212 ASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAERPEKLVLTNIGVPPIAIRPSVFMDGGT 271
Query: 356 QSNENDITERLKRIIQANASLRQEMLET 439
QSNEND+TERLKRIIQANASL QE+ +T
Sbjct: 272 QSNENDVTERLKRIIQANASLHQELQDT 299
>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Solanum lycopersicum]
Length = 1390
Score = 195 bits (495), Expect = 6e-48
Identities = 96/147 (65%), Positives = 116/147 (78%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGN 181
K+CNAMAG ++ CS+CGY+NGMVK+ L+I H++ + LDE AIS +E R +
Sbjct: 155 KRCNAMAGGQKTATCSKCGYMNGMVKKLQLKITHEQGNRI---LDEINVAISDKRELRAS 211
Query: 182 ANVSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQS 361
+V IDPK+ Y L KNM DEDCELLYL+DRPEKL+VT+I VPPIAIRPSVFVDGGTQS
Sbjct: 212 VSVPPEIDPKVVYSLFKNMSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQS 271
Query: 362 NENDITERLKRIIQANASLRQEMLETN 442
NENDITERLKRIIQANASL QEM +++
Sbjct: 272 NENDITERLKRIIQANASLHQEMSDSS 298
>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X2 [Solanum tuberosum]
Length = 1243
Score = 194 bits (493), Expect = 1e-47
Identities = 95/147 (64%), Positives = 116/147 (78%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGN 181
K+CNAMAG ++ CS+CGY+NGMVK+ L+I H++ + LDE AIS +E R +
Sbjct: 155 KRCNAMAGGQKTATCSKCGYMNGMVKKLQLKITHEQGNRI---LDEINVAISDKRELRAS 211
Query: 182 ANVSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQS 361
+V +DPK+ Y L KNM DEDCELLYL+DRPEKL+VT+I VPPIAIRPSVFVDGGTQS
Sbjct: 212 VSVPPELDPKVVYSLFKNMSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQS 271
Query: 362 NENDITERLKRIIQANASLRQEMLETN 442
NENDITERLKRIIQANASL QEM +++
Sbjct: 272 NENDITERLKRIIQANASLHQEMSDSS 298
>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Solanum tuberosum]
Length = 1394
Score = 194 bits (493), Expect = 1e-47
Identities = 95/147 (64%), Positives = 116/147 (78%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGN 181
K+CNAMAG ++ CS+CGY+NGMVK+ L+I H++ + LDE AIS +E R +
Sbjct: 155 KRCNAMAGGQKTATCSKCGYMNGMVKKLQLKITHEQGNRI---LDEINVAISDKRELRAS 211
Query: 182 ANVSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQS 361
+V +DPK+ Y L KNM DEDCELLYL+DRPEKL+VT+I VPPIAIRPSVFVDGGTQS
Sbjct: 212 VSVPPELDPKVVYSLFKNMSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQS 271
Query: 362 NENDITERLKRIIQANASLRQEMLETN 442
NENDITERLKRIIQANASL QEM +++
Sbjct: 272 NENDITERLKRIIQANASLHQEMSDSS 298
>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
Length = 1395
Score = 185 bits (470), Expect = 5e-45
Identities = 101/150 (67%), Positives = 120/150 (80%), Gaps = 3/150 (2%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYR 175
KKC+AMA SK AVKC RCGY+NG VK+A L I HDR+K+ DN L+E +SAISHTKE +
Sbjct: 150 KKCSAMASSK-AVKCWRCGYVNGTVKKAVAMLGIIHDRSKINDNSLEEFRSAISHTKESK 208
Query: 176 GNANVSS-TIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGG 352
+ NV++ ++P L K M D DCELLYL+DRPEKLI+TNI VPPI IRPSV +D G
Sbjct: 209 ASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDRPEKLIITNIAVPPIPIRPSVIMD-G 267
Query: 353 TQSNENDITERLKRIIQANASLRQEMLETN 442
+QSNENDITERLKRIIQANASLRQE++ETN
Sbjct: 268 SQSNENDITERLKRIIQANASLRQELVETN 297
>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 173 bits (439), Expect = 2e-41
Identities = 95/148 (64%), Positives = 116/148 (78%), Gaps = 3/148 (2%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYR 175
KKC++M +K AVKC+RCG +NGMVK+A L I HDRAK+VD YL+EC+SAI+HTKE R
Sbjct: 126 KKCSSMTSNK-AVKCTRCGDMNGMVKKAGSVLSIIHDRAKLVDGYLEECRSAIAHTKESR 184
Query: 176 GNANVSSTI-DPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGG 352
++++ I P L K + +EDCE+L L DRPEKLI+TNI VPPI+IRPSVF D G
Sbjct: 185 APISLATYILTPVKVLSLFKRIPEEDCEVLGLYDRPEKLIITNIAVPPISIRPSVFTD-G 243
Query: 353 TQSNENDITERLKRIIQANASLRQEMLE 436
QSNENDITERLK+IIQANASLR E+LE
Sbjct: 244 LQSNENDITERLKQIIQANASLRMELLE 271
>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
family protein [Populus trichocarpa]
Length = 1394
Score = 171 bits (434), Expect = 7e-41
Identities = 91/148 (61%), Positives = 115/148 (77%), Gaps = 3/148 (2%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYR 175
KKC++MA SK AVKC RCGY+NGMVK+A + I HDR+K++D YL+EC+SAI HT+E R
Sbjct: 155 KKCSSMASSK-AVKCLRCGYMNGMVKKAGSVVGIIHDRSKLIDGYLEECKSAIGHTREAR 213
Query: 176 GNANVSSTI-DPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGG 352
+++ I +P L + M++EDCELLYL RPEKLI+T I VPPI+IRPSVF + G
Sbjct: 214 APIGLATYILNPVRVLSLFQRMVEEDCELLYLQGRPEKLIITTIAVPPISIRPSVFTE-G 272
Query: 353 TQSNENDITERLKRIIQANASLRQEMLE 436
+QSNENDITERLK+IIQ NA LR E+LE
Sbjct: 273 SQSNENDITERLKQIIQFNAKLRLELLE 300
>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Citrus sinensis]
gi|568870034|ref|XP_006488217.1| PREDICTED: DNA-directed
RNA polymerase III subunit rpc1-like isoform X2 [Citrus
sinensis]
Length = 1404
Score = 169 bits (428), Expect = 3e-40
Identities = 95/150 (63%), Positives = 115/150 (76%), Gaps = 3/150 (2%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYR 175
KKC+ MA +AVKC RCGYINGMVK+A L I HDR+KV ++ L E SAI+HTKE +
Sbjct: 159 KKCSTMAS--KAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTES-LQEFASAITHTKESK 215
Query: 176 GNANVSSTI-DPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGG 352
NV++ I +P L K M D DCE+LYL++RPEKLI+TNI VPPIAIRPSV +D G
Sbjct: 216 AAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMD-G 274
Query: 353 TQSNENDITERLKRIIQANASLRQEMLETN 442
+QSNENDITERLKRIIQ NASL+QE++E N
Sbjct: 275 SQSNENDITERLKRIIQTNASLQQELVEAN 304
>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
gi|557526635|gb|ESR37941.1| hypothetical protein
CICLE_v10027681mg [Citrus clementina]
Length = 1397
Score = 169 bits (428), Expect = 3e-40
Identities = 95/150 (63%), Positives = 115/150 (76%), Gaps = 3/150 (2%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYR 175
KKC+ MA +AVKC RCGYINGMVK+A L I HDR+KV ++ L E SAI+HTKE +
Sbjct: 174 KKCSTMAS--KAVKCPRCGYINGMVKKAVAVLGIIHDRSKVTES-LQEFASAITHTKESK 230
Query: 176 GNANVSSTI-DPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGG 352
NV++ I +P L K M D DCE+LYL++RPEKLI+TNI VPPIAIRPSV +D G
Sbjct: 231 AAVNVATYILNPVNVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMD-G 289
Query: 353 TQSNENDITERLKRIIQANASLRQEMLETN 442
+QSNENDITERLKRIIQ NASL+QE++E N
Sbjct: 290 SQSNENDITERLKRIIQTNASLQQELVEAN 319
>ref|XP_004505924.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X2 [Cicer arietinum]
Length = 1291
Score = 155 bits (393), Expect = 4e-36
Identities = 81/141 (57%), Positives = 106/141 (75%), Gaps = 3/141 (2%)
Frame = +2
Query: 26 SKRAVKCSRCGYINGMVK--RAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSS- 196
S + +KC RCGYING+VK R+ LRI HD + ++ + E QSA+SH KEYR +++S
Sbjct: 52 SAKFIKCQRCGYINGIVKLTRSTLRIVHDCSHGKNDVVSELQSALSHMKEYRATNDLASR 111
Query: 197 TIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDI 376
+DPK + L M DEDC LLYL +RPEKLI+TNI VPPI IRPSV +D G+QSNENDI
Sbjct: 112 NLDPKSVHSLFTKMSDEDCALLYLAERPEKLIITNIAVPPIVIRPSVIMD-GSQSNENDI 170
Query: 377 TERLKRIIQANASLRQEMLET 439
TE+L++IIQANA+L +E+ E+
Sbjct: 171 TEKLRKIIQANAALHKELEES 191
>ref|XP_004505923.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
isoform X1 [Cicer arietinum]
Length = 1399
Score = 155 bits (393), Expect = 4e-36
Identities = 81/141 (57%), Positives = 106/141 (75%), Gaps = 3/141 (2%)
Frame = +2
Query: 26 SKRAVKCSRCGYINGMVK--RAPLRIQHDRAKVVDNYLDECQSAISHTKEYRGNANVSS- 196
S + +KC RCGYING+VK R+ LRI HD + ++ + E QSA+SH KEYR +++S
Sbjct: 160 SAKFIKCQRCGYINGIVKLTRSTLRIVHDCSHGKNDVVSELQSALSHMKEYRATNDLASR 219
Query: 197 TIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGTQSNENDI 376
+DPK + L M DEDC LLYL +RPEKLI+TNI VPPI IRPSV +D G+QSNENDI
Sbjct: 220 NLDPKSVHSLFTKMSDEDCALLYLAERPEKLIITNIAVPPIVIRPSVIMD-GSQSNENDI 278
Query: 377 TERLKRIIQANASLRQEMLET 439
TE+L++IIQANA+L +E+ E+
Sbjct: 279 TEKLRKIIQANAALHKELEES 299
>gb|EMJ09344.1| hypothetical protein PRUPE_ppa024521mg, partial [Prunus persica]
Length = 867
Score = 154 bits (390), Expect = 9e-36
Identities = 83/148 (56%), Positives = 112/148 (75%), Gaps = 3/148 (2%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYR 175
KKCN + + R VKCS+CG+ING VK+A L I HDR+K+ + +D+ ++ +SHTKE +
Sbjct: 160 KKCNNLTTNYRPVKCSKCGFINGSVKKAVGVLGIIHDRSKL-NGVMDDFRTTLSHTKESK 218
Query: 176 GNANVSS-TIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGG 352
+ NV++ ++P Y L K M+DEDCELL L++RP+ LI+ NI VPPIAIRPSV VD
Sbjct: 219 ASFNVATHMLNPARIYSLFKRMVDEDCELLNLSNRPQNLIIKNIAVPPIAIRPSVIVD-R 277
Query: 353 TQSNENDITERLKRIIQANASLRQEMLE 436
+ SNENDITERLKRIIQ+NA LR+++LE
Sbjct: 278 SLSNENDITERLKRIIQSNAILRRDLLE 305
>gb|ESW04135.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
Length = 1392
Score = 151 bits (381), Expect = 1e-34
Identities = 82/150 (54%), Positives = 106/150 (70%), Gaps = 3/150 (2%)
Frame = +2
Query: 5 KCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYRG 178
K + + V C RCGYING VK+ P L I HD +K +N ++E +S +S K+ +
Sbjct: 152 KVRIIKDCSKVVNCPRCGYINGSVKKLPASLIIMHDCSKCKNNIVEELESTLSRIKDSKA 211
Query: 179 NANVSSTI-DPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGT 355
ANVS+ I +P L + MLDEDCELLY+ +RPEKLI+TNI+VPPIAIRPSV +D +
Sbjct: 212 TANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEKLIITNIVVPPIAIRPSVVMD-ES 270
Query: 356 QSNENDITERLKRIIQANASLRQEMLETNL 445
SNENDITERLK IIQANA LRQE+ E+++
Sbjct: 271 LSNENDITERLKNIIQANAVLRQELQESSV 300
>ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata] gi|297310500|gb|EFH40924.1| hypothetical protein
ARALYDRAFT_496142 [Arabidopsis lyrata subsp. lyrata]
Length = 1376
Score = 150 bits (378), Expect = 2e-34
Identities = 80/146 (54%), Positives = 103/146 (70%), Gaps = 5/146 (3%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAPLR----IQHDRAKVVDNYLDECQSAISHTKE 169
KKC+ MA S+R + C +CGY+NGMVK+ + I HDR+K+ +DEC+SAISHTKE
Sbjct: 154 KKCSTMA-SQRIITCKKCGYLNGMVKKIAAQMGIGISHDRSKIHGGEVDECKSAISHTKE 212
Query: 170 YRGNAN-VSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVD 346
N ++ +DP + L K M D+DCELLY+ RPE LI T +LVPP++IRPSV +
Sbjct: 213 STRAINPLTYVLDPNLVLGLFKGMSDKDCELLYIAHRPENLITTCMLVPPLSIRPSVMI- 271
Query: 347 GGTQSNENDITERLKRIIQANASLRQ 424
GGT+SNENDITERLK IIQ NA L +
Sbjct: 272 GGTRSNENDITERLKLIIQNNACLHR 297
>dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
Length = 1383
Score = 147 bits (372), Expect = 1e-33
Identities = 77/146 (52%), Positives = 103/146 (70%), Gaps = 5/146 (3%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAPLR----IQHDRAKVVDNYLDECQSAISHTKE 169
KKC+ MA S+R + C +CGY+NGMVK+ + I HDR+K+ +DEC+SAISHTK+
Sbjct: 154 KKCSTMA-SQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQ 212
Query: 170 YRGNAN-VSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVD 346
N ++ +DP + L K M D+DCELLY+ RPE LI+T +LVPP++IRPSV +
Sbjct: 213 STAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIAYRPENLIITCMLVPPLSIRPSVMI- 271
Query: 347 GGTQSNENDITERLKRIIQANASLRQ 424
GG QSNEND+T RLK+II NASL +
Sbjct: 272 GGIQSNENDLTARLKQIILGNASLHK 297
>ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1
[Arabidopsis thaliana]
Length = 1391
Score = 147 bits (372), Expect = 1e-33
Identities = 77/146 (52%), Positives = 103/146 (70%), Gaps = 5/146 (3%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAPLR----IQHDRAKVVDNYLDECQSAISHTKE 169
KKC+ MA S+R + C +CGY+NGMVK+ + I HDR+K+ +DEC+SAISHTK+
Sbjct: 164 KKCSTMA-SQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQ 222
Query: 170 YRGNAN-VSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVD 346
N ++ +DP + L K M D+DCELLY+ RPE LI+T +LVPP++IRPSV +
Sbjct: 223 STAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIAYRPENLIITCMLVPPLSIRPSVMI- 281
Query: 347 GGTQSNENDITERLKRIIQANASLRQ 424
GG QSNEND+T RLK+II NASL +
Sbjct: 282 GGIQSNENDLTARLKQIILGNASLHK 307
>ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1
[Arabidopsis thaliana]
Length = 1376
Score = 147 bits (372), Expect = 1e-33
Identities = 77/146 (52%), Positives = 103/146 (70%), Gaps = 5/146 (3%)
Frame = +2
Query: 2 KKCNAMAGSKRAVKCSRCGYINGMVKRAPLR----IQHDRAKVVDNYLDECQSAISHTKE 169
KKC+ MA S+R + C +CGY+NGMVK+ + I HDR+K+ +DEC+SAISHTK+
Sbjct: 154 KKCSTMA-SQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSKIHGGEIDECKSAISHTKQ 212
Query: 170 YRGNAN-VSSTIDPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVD 346
N ++ +DP + L K M D+DCELLY+ RPE LI+T +LVPP++IRPSV +
Sbjct: 213 STAAINPLTYVLDPNLVLGLFKRMSDKDCELLYIAYRPENLIITCMLVPPLSIRPSVMI- 271
Query: 347 GGTQSNENDITERLKRIIQANASLRQ 424
GG QSNEND+T RLK+II NASL +
Sbjct: 272 GGIQSNENDLTARLKQIILGNASLHK 297
>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Glycine max]
Length = 1391
Score = 147 bits (371), Expect = 1e-33
Identities = 82/148 (55%), Positives = 102/148 (68%), Gaps = 3/148 (2%)
Frame = +2
Query: 5 KCNAMAGSKRAVKCSRCGYINGMVKRAP--LRIQHDRAKVVDNYLDECQSAISHTKEYRG 178
K + + V C RCGYING VK+ P L I HD +K + ++E SA+S K+ R
Sbjct: 152 KVRVIKDCSKVVNCPRCGYINGSVKKLPASLTIIHDCSKCRNYIVEELDSALSRMKDSRA 211
Query: 179 NANVSSTI-DPKIAYQLLKNMLDEDCELLYLNDRPEKLIVTNILVPPIAIRPSVFVDGGT 355
NVS+ I +P L K MLDEDCELLY+ +RPEKLI+TN++VPPIAIRPSV +D +
Sbjct: 212 TTNVSNRILNPFQVLSLFKRMLDEDCELLYVAERPEKLIMTNVVVPPIAIRPSVVMD-ES 270
Query: 356 QSNENDITERLKRIIQANASLRQEMLET 439
SNENDITERLK IIQANA LRQE+ E+
Sbjct: 271 LSNENDITERLKNIIQANAVLRQELQES 298