BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00028512
         (1472 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006576519.1| replication protein 2a [Amazon lily mild mot...   795   0.0  
gb|AHJ89006.1| putative polymerase [Cassava Ivorian bacilliform ...   749   0.0  
gb|AFU72537.1| protein 2a [Pelargonium zonate spot virus]             528   e-147
ref|NP_619771.1| putative 2a protein [Pelargonium zonate spot vi...   526   e-147
emb|CAA41362.1| 2a protein [Brome mosaic virus]                       426   e-116
dbj|BAJ41521.1| 2a protein [Brome mosaic virus]                       425   e-116
gb|ABF83486.1| 2a protein [Brome mosaic virus]                        425   e-116
gb|ADW09018.1| polymerase 2a [Brome mosaic virus]                     424   e-116
ref|NP_041197.1| RNA-dependent RNA polymerase [Brome mosaic viru...   423   e-116
ref|NP_613275.1| 2a protein [Cowpea chlorotic mottle virus] gi|1...   409   e-111
gb|AEI54613.1| 2a protein [Cowpea chlorotic mottle virus]             409   e-111
gb|AEI54609.1| 2a protein [Cowpea chlorotic mottle virus]             409   e-111
gb|AAN37632.1| 2a protein [Cowpea chlorotic mottle virus]             403   e-109
gb|AHA10985.1| 2a protein [Tomato aspermy virus]                      402   e-109
ref|NP_620761.1| 2a protein [Tomato aspermy virus] gi|137276|sp|...   402   e-109
gb|ADR82074.1| 2a protein [Tomato aspermy virus]                      402   e-109
gb|ACF34994.1| 2a protein [Peanut stunt virus]                        400   e-109
ref|YP_002640501.1| 2a protein [Gayfeather mild mottle virus] gi...   400   e-109
emb|CAP19050.1| 2a protein [Peanut stunt virus]                       400   e-108
gb|AAA86113.1| 2a protein [Broad bean mottle virus]                   399   e-108

>ref|YP_006576519.1| replication protein 2a [Amazon lily mild mottle virus]
            gi|398650494|dbj|BAM34544.1| replication protein 2a
            [Amazon lily mild mottle virus]
          Length = 657

 Score =  795 bits (2053), Expect = 0.0
 Identities = 381/440 (86%), Positives = 411/440 (93%)
 Frame = -1

Query: 1322 VHSESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPVMQITECDLELPIPILTGR 1143
            V +E   RLME+SYG+HFTLV EEFIEECPAAAINVA+  P+ Q  ECDL  P+P+L GR
Sbjct: 107  VCTEGNERLMESSYGNHFTLVGEEFIEECPAAAINVASVVPIDQQFECDLTAPLPVLKGR 166

Query: 1142 SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGF 963
            SDRV+LEKLQ TVDAILPTHARFDDTFHQAFVEN D+SLDF+RIRLKQYAGDWY+DPD F
Sbjct: 167  SDRVTLEKLQTTVDAILPTHARFDDTFHQAFVENADVSLDFERIRLKQYAGDWYRDPDNF 226

Query: 962  YQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVNVN 783
            Y+P L SGGC+RR+GSQKEALIAIRKRNADVPELAGSVNID+VA+WAADNFMK+FVVNV+
Sbjct: 227  YEPVLKSGGCSRRVGSQKEALIAIRKRNADVPELAGSVNIDQVAEWAADNFMKSFVVNVS 286

Query: 782  PLVQVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTDVKPVVADGMNLERAVPATI 603
            PLVQVM++M+AYM KW+DRVDPL VLGETNLQRYQHMIKTDVKP+  DGMNLERA+PATI
Sbjct: 287  PLVQVMSKMKAYMEKWSDRVDPLMVLGETNLQRYQHMIKTDVKPITNDGMNLERAIPATI 346

Query: 602  TFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMKYGFKNKYYVEIDLSKFD 423
            TFHDKMVCSNFSPWFTALFDG QKSLNSRVRIPSGPISTLEM YGFKNKYYVEIDLSKFD
Sbjct: 347  TFHDKMVCSNFSPWFTALFDGLQKSLNSRVRIPSGPISTLEMHYGFKNKYYVEIDLSKFD 406

Query: 422  KSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTY 243
            KSQGELHLEFQRLILLRLGLPAHLVNWWCELH+RS++SDP AGVAFQCAYQRRTGDAFT+
Sbjct: 407  KSQGELHLEFQRLILLRLGLPAHLVNWWCELHIRSFISDPTAGVAFQCAYQRRTGDAFTF 466

Query: 242  FGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPV 63
            FGNTLVTMAEFACCFDCSQFE MLF+GDDSLAVSN+PITGDTDLF SLFNMESK MANPV
Sbjct: 467  FGNTLVTMAEFACCFDCSQFEMMLFAGDDSLAVSNSPITGDTDLFTSLFNMESKSMANPV 526

Query: 62   PYICSKFLIEDSFGNSFSVP 3
            PYICSKFLIED FGNSFSVP
Sbjct: 527  PYICSKFLIEDCFGNSFSVP 546


>gb|AHJ89006.1| putative polymerase [Cassava Ivorian bacilliform virus]
          Length = 680

 Score =  749 bits (1933), Expect = 0.0
 Identities = 358/437 (81%), Positives = 390/437 (89%)
 Frame = -1

Query: 1313 ESEVRLMETSYGSHFTLVQEEFIEECPAAAINVATCEPVMQITECDLELPIPILTGRSDR 1134
            E   RLMET YG HFTLVQEEF+EE P A++N+A   P+ QI  CD+E PIP+  GRSDR
Sbjct: 134  EGSDRLMETGYGDHFTLVQEEFVEEIPMASLNIAPVVPLEQIFSCDIEQPIPLTKGRSDR 193

Query: 1133 VSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGFYQP 954
            V LEKLQ TVD+ILPTH+RFDDTFHQAFVEN DI+LDF+RI+LKQY GDWY+DPD FY+P
Sbjct: 194  VCLEKLQATVDSILPTHSRFDDTFHQAFVENSDINLDFERIKLKQYTGDWYRDPDRFYEP 253

Query: 953  NLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVNVNPLV 774
             L SGGCARR+G+QKEALIAIRKRNADVPELAGSV+ID+ AKW AD F K++V ++ PL 
Sbjct: 254  ALKSGGCARRVGTQKEALIAIRKRNADVPELAGSVDIDKTAKWVADVFFKSYVSSLKPLE 313

Query: 773  QVMTRMQAYMSKWADRVDPLFVLGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFH 594
            QVM+RM+AY  KW DRVDPL VL  TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFH
Sbjct: 314  QVMSRMKAYCDKWKDRVDPLAVLSGTNLQRYQHMIKTDVKPVVADGMNLERAVPATITFH 373

Query: 593  DKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMKYGFKNKYYVEIDLSKFDKSQ 414
            DK+ C+NFSPWFTALFDGFQKSL  RVRIPSGPISTLEM YGFKNKYYVEIDLSKFDKSQ
Sbjct: 374  DKITCANFSPWFTALFDGFQKSLIDRVRIPSGPISTLEMNYGFKNKYYVEIDLSKFDKSQ 433

Query: 413  GELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGN 234
            GELHLEFQRL+LLRLGLPAHLVNWWCELH++S++SDPNAGVAF CAYQRRTGDAFTYFGN
Sbjct: 434  GELHLEFQRLLLLRLGLPAHLVNWWCELHIKSFISDPNAGVAFPCAYQRRTGDAFTYFGN 493

Query: 233  TLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYI 54
            TLVTMAEFACCFDCSQFE MLFSGDDSLAVSNNPI GDTDLF SLFNMESK M +PVPYI
Sbjct: 494  TLVTMAEFACCFDCSQFEIMLFSGDDSLAVSNNPIAGDTDLFTSLFNMESKSMEDPVPYI 553

Query: 53   CSKFLIEDSFGNSFSVP 3
            CSKFLIEDSFG SFSVP
Sbjct: 554  CSKFLIEDSFGRSFSVP 570


>gb|AFU72537.1| protein 2a [Pelargonium zonate spot virus]
          Length = 687

 Score =  528 bits (1360), Expect = e-147
 Identities = 250/429 (58%), Positives = 326/429 (75%), Gaps = 1/429 (0%)
 Frame = -1

Query: 1286 SYGSHFTLVQEEFIEECPAAAINVATCEPVMQITECDLELPIPILTGRS-DRVSLEKLQC 1110
            S+  +FT+V+EE +EE P  ++N     P+  +    L+ P+ +  GR  DRV+LE LQ 
Sbjct: 150  SFRDYFTIVEEELVEEDPLISLNDGNVCPIRTLEVTSLKKPVMLDVGRRCDRVNLESLQG 209

Query: 1109 TVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCA 930
             ++  LP+HA FDDT+HQ FVE   + +DFD IRL+Q      +D D +YQP L +G  +
Sbjct: 210  AINMNLPSHAYFDDTWHQYFVEGSKLDVDFDNIRLRQSEVFCDRDLDRYYQPELFAGASS 269

Query: 929  RRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVNVNPLVQVMTRMQA 750
            RRIG+QKEAL+AIRKRNADVPELA SV+++ +++  A  F+ ++V ++ P+V VM +M+A
Sbjct: 270  RRIGTQKEALVAIRKRNADVPELADSVDVERLSELVAKKFLSSYVCDLKPVVGVMEKMRA 329

Query: 749  YMSKWADRVDPLFVLGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNF 570
            Y  KW D++DP+F+L E NLQRY+HMIKTDVKP VA  M++ERA+PATITFH K +C+ F
Sbjct: 330  YHQKWGDKIDPMFLLKEHNLQRYEHMIKTDVKPTVAHSMHVERAIPATITFHGKSICAGF 389

Query: 569  SPWFTALFDGFQKSLNSRVRIPSGPISTLEMKYGFKNKYYVEIDLSKFDKSQGELHLEFQ 390
            SPWFTALFD FQKSL+ RV IPSGPIST+EM +  +NKYY+E+DLSKFDKSQG LHLEFQ
Sbjct: 390  SPWFTALFDEFQKSLDERVVIPSGPISTIEMDFDIRNKYYLEVDLSKFDKSQGLLHLEFQ 449

Query: 389  RLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEF 210
            R IL ++GLP HL NWWC+ H +S++SDP A V+F C++QRRTGDAFT+FGNTLVTMA F
Sbjct: 450  RKILCKIGLPTHLANWWCDFHYKSFISDPRAKVSFNCSFQRRTGDAFTFFGNTLVTMAMF 509

Query: 209  ACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIED 30
            + C+D  QFE MLF+GDDSLA+S++PI G +D F SLFNME+K+M   VPYICSKFL+ D
Sbjct: 510  SFCYDTRQFEKMLFAGDDSLAISSSPIVGCSDYFVSLFNMEAKIMDPGVPYICSKFLVSD 569

Query: 29   SFGNSFSVP 3
              G  FS P
Sbjct: 570  ELGRCFSAP 578


>ref|NP_619771.1| putative 2a protein [Pelargonium zonate spot virus]
            gi|81968684|sp|Q9DUT2.1|RDRP_PZSVT RecName:
            Full=RNA-directed RNA polymerase 2a; Short=protein 2a
            gi|10185104|emb|CAC08527.1| putative 2a protein
            [Pelargonium zonate spot virus]
          Length = 687

 Score =  526 bits (1355), Expect = e-147
 Identities = 253/429 (58%), Positives = 326/429 (75%), Gaps = 1/429 (0%)
 Frame = -1

Query: 1286 SYGSHFTLVQEEFIEECPAAAINVATCEPVMQITECDLELPIPILTGRS-DRVSLEKLQC 1110
            S+  +FT+V+EEF+EE P  ++N     PV       LE P+ +  GR  DRV+LE LQ 
Sbjct: 150  SFRDYFTIVEEEFVEEDPLISLNDGNVCPVRTHEVTSLEKPVMLDVGRRCDRVNLESLQG 209

Query: 1109 TVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCA 930
             ++  LP+HA FDDT+HQ FVE   + +DFD IRL+Q      +D D +YQP L +G  +
Sbjct: 210  AINMNLPSHAYFDDTWHQYFVEGSKLDVDFDNIRLRQSEVFCDRDLDRYYQPELFAGASS 269

Query: 929  RRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVNVNPLVQVMTRMQA 750
            RRIG+QKEAL+AIRKRNADVPELA SV+++ +++  A  F+ ++V ++ P+V VM +M+A
Sbjct: 270  RRIGTQKEALVAIRKRNADVPELADSVDVERLSESVAKKFLSSYVCDLKPVVGVMEKMRA 329

Query: 749  YMSKWADRVDPLFVLGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNF 570
            Y  KW D++DP+F+L E NLQRY+HMIKTDVKP VA  M++ERA+PATITFH K +C+ F
Sbjct: 330  YHQKWGDKIDPMFLLKEHNLQRYEHMIKTDVKPTVAHSMHVERAIPATITFHGKSICAGF 389

Query: 569  SPWFTALFDGFQKSLNSRVRIPSGPISTLEMKYGFKNKYYVEIDLSKFDKSQGELHLEFQ 390
            SP FTALFD FQKSL+ RV IPSGPIST+EM +  +NKYY+E+DLSKFDKSQG LHLEFQ
Sbjct: 390  SPSFTALFDEFQKSLDERVVIPSGPISTIEMDFDIRNKYYLEVDLSKFDKSQGLLHLEFQ 449

Query: 389  RLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEF 210
            R IL ++GLPAHL NWWC+ H +S++SDP A V+F C++QRRTGDAFT+FGNTLVTMA F
Sbjct: 450  RKILCKIGLPAHLANWWCDFHYKSFISDPRAKVSFNCSFQRRTGDAFTFFGNTLVTMAMF 509

Query: 209  ACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIED 30
            + C+D  QFE MLF+GDDSLA+S++PI G +D F SLFNME+K+M   VPYICSKFL+ D
Sbjct: 510  SFCYDTRQFEKMLFAGDDSLAISSSPIVGCSDYFVSLFNMEAKIMDPGVPYICSKFLVSD 569

Query: 29   SFGNSFSVP 3
              G  FS P
Sbjct: 570  ELGRCFSAP 578


>emb|CAA41362.1| 2a protein [Brome mosaic virus]
          Length = 822

 Score =  426 bits (1096), Expect = e-116
 Identities = 241/476 (50%), Positives = 300/476 (63%), Gaps = 27/476 (5%)
 Frame = -1

Query: 1349 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1200
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 1199 VMQI------TECDLELPIPILTGRS--DRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1044
            +         T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IEHRVSRVIDTHCHPDNP-DISTGPIYVERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 1043 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 864
            NGD S+DFDRIRLKQ   DWYKDPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYKDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 863  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 708
            +  ++N+ E AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKETAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 707  LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 528
              ET+L+RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLRRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 527  LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 351
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 350  VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 171
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 170  FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  S+P
Sbjct: 555  FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIP 610


>dbj|BAJ41521.1| 2a protein [Brome mosaic virus]
          Length = 822

 Score =  425 bits (1093), Expect = e-116
 Identities = 240/476 (50%), Positives = 300/476 (63%), Gaps = 27/476 (5%)
 Frame = -1

Query: 1349 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1200
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 1199 VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1044
            +         T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IEHRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 1043 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 864
            NGD S+DFDRIRLKQ   DWY+DPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 863  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 708
            +  ++N+ E AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKETAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 707  LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 528
              ET+L+RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLRRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 527  LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 351
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 350  VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 171
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 170  FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  S+P
Sbjct: 555  FSGDDSLIISKVRPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIP 610


>gb|ABF83486.1| 2a protein [Brome mosaic virus]
          Length = 822

 Score =  425 bits (1093), Expect = e-116
 Identities = 240/476 (50%), Positives = 300/476 (63%), Gaps = 27/476 (5%)
 Frame = -1

Query: 1349 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1200
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 1199 VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1044
            +         T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IEHRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 1043 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 864
            NGD S+DFDRIRLKQ   DWY+DPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 863  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 708
            +  ++N+ E AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKETAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 707  LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 528
              ET+L+RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLRRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 527  LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 351
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 350  VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 171
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 170  FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  S+P
Sbjct: 555  FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNWVSIP 610


>gb|ADW09018.1| polymerase 2a [Brome mosaic virus]
          Length = 822

 Score =  424 bits (1091), Expect = e-116
 Identities = 240/476 (50%), Positives = 300/476 (63%), Gaps = 27/476 (5%)
 Frame = -1

Query: 1349 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1200
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 1199 VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1044
            + +       T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IERRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 1043 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 864
            NGD S+DFDRIRLKQ   DWYKDPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYKDPDRYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 863  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 708
            +  ++N+ + AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKDTAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 707  LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 528
              ET+L RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLCRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 527  LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 351
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 350  VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 171
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 170  FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  S+P
Sbjct: 555  FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSIP 610


>ref|NP_041197.1| RNA-dependent RNA polymerase [Brome mosaic virus]
            gi|137271|sp|P03594.1|RDRP_BMV RecName: Full=RNA-directed
            RNA polymerase 2a; Short=protein 2a
            gi|58731|emb|CAA25834.1| unnamed protein product [Brome
            mosaic virus]
          Length = 822

 Score =  423 bits (1088), Expect = e-116
 Identities = 240/476 (50%), Positives = 299/476 (62%), Gaps = 27/476 (5%)
 Frame = -1

Query: 1349 KDLESDFPLVHSES-----EVRLM-----ETSYGSHFTLVQEEFIEECPAAAINVATCEP 1200
            +D  SD  L    S     EVR+      E + G  +  + EEF        I +    P
Sbjct: 137  EDHASDLKLASDSSNCEIEEVRVTGDTPKELTLGDRYMGIDEEFQTTNTDYDITLQIMNP 196

Query: 1199 VMQI------TECDLELPIPILTGR--SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVE 1044
            +         T C  + P  I TG    +RVSL + + T  +ILPTHA FDD++HQA VE
Sbjct: 197  IEHRVSRVIDTHCHPDNP-DISTGPIYMERVSLARTEATSHSILPTHAYFDDSYHQALVE 255

Query: 1043 NGDISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPE 864
            NGD S+DFDRIRLKQ   DWY+DPD ++QP +  G   RR+G+QKE L A++KRNADVPE
Sbjct: 256  NGDYSMDFDRIRLKQSDVDWYRDPDKYFQPKMNIGSAQRRVGTQKEVLTALKKRNADVPE 315

Query: 863  LAGSVNIDEVAKWAADNFMKAFVVNVN------PLVQVMTRMQAYMSKWADRVD--PLFV 708
            +  ++N+ + AK  A  F   F+ NV+        + VMT+   Y  KW   +D   + V
Sbjct: 316  MGDAINMKDTAKAIAKRFRSTFL-NVDGEDCLRASMDVMTKCLEYHKKWGKHMDLQGVNV 374

Query: 707  LGETNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKS 528
              ET+L RYQHM+K+DVKPVV D ++LERAV ATITFH K V SNFSP+FTA F+    +
Sbjct: 375  AAETDLCRYQHMLKSDVKPVVTDTLHLERAVAATITFHSKGVTSNFSPFFTACFEKLSLA 434

Query: 527  LNSRVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHL 351
            L SR  +P G IS+LE+K     N+Y++E DLSKFDKSQGELHLEFQR ILL LG PA L
Sbjct: 435  LKSRFIVPIGKISSLELKNVRLNNRYFLEADLSKFDKSQGELHLEFQREILLALGFPAPL 494

Query: 350  VNWWCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECML 171
             NWW + H  SY+SDP+A V    ++QRRTGDAFTYFGNTLVTMA  A   D S  +C +
Sbjct: 495  TNWWSDFHRDSYLSDPHAKVGMSVSFQRRTGDAFTYFGNTLVTMAMIAYASDLSDCDCAI 554

Query: 170  FSGDDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            FSGDDSL +S      DTD+F SLFNME KVM   VPY+CSKFL+E   GN  SVP
Sbjct: 555  FSGDDSLIISKVKPVLDTDMFTSLFNMEIKVMDPSVPYVCSKFLVETEMGNLVSVP 610


>ref|NP_613275.1| 2a protein [Cowpea chlorotic mottle virus]
            gi|137272|sp|P20179.1|RDRP_CCMV RecName:
            Full=RNA-directed RNA polymerase 2a; Short=protein 2a
            gi|331606|gb|AAA46371.1| 2a protein [Cowpea chlorotic
            mottle virus]
          Length = 808

 Score =  409 bits (1051), Expect = e-111
 Identities = 216/413 (52%), Positives = 277/413 (67%), Gaps = 8/413 (1%)
 Frame = -1

Query: 1217 VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 1038
            V  CE   + +E D     P +    DR+SL+ L+     +LPTHA FDDT++QA  E G
Sbjct: 213  VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268

Query: 1037 DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 858
            D ++D  ++ ++Q   DWY+DP+ +Y+P L  G   RRIG+QK  L A++KRNADVPELA
Sbjct: 269  DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328

Query: 857  GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 699
             SV+I  VA   A+ F +A++ +     +   + VM+R   Y  KW D  D   + VL E
Sbjct: 329  DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388

Query: 698  TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 519
             NLQRYQHMIK+D+KPVV+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389  INLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448

Query: 518  RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 342
            R  +P G IS+LE+K     NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449  RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508

Query: 341  WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 162
            WC+ H  S +SDP+AGV    ++QRRTGDAFTYFGNTLVTMA  A C D +  +C +FSG
Sbjct: 509  WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMNTVDCAIFSG 568

Query: 161  DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            DDSL +  +    D ++F SLFNME KVM   +PY+CSKFL+E    N  SVP
Sbjct: 569  DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVP 621


>gb|AEI54613.1| 2a protein [Cowpea chlorotic mottle virus]
          Length = 808

 Score =  409 bits (1050), Expect = e-111
 Identities = 216/413 (52%), Positives = 276/413 (66%), Gaps = 8/413 (1%)
 Frame = -1

Query: 1217 VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 1038
            V  CE   + +E D     P +    DR+SL+ L+     +LPTHA FDDT++QA  E G
Sbjct: 213  VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268

Query: 1037 DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 858
            D ++D  ++ ++Q   DWY+DP+ +Y+P L  G   RRIG+QK  L A++KRNADVPELA
Sbjct: 269  DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328

Query: 857  GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 699
             SV+I  VA   A+ F +A++ +     +   + VM+R   Y  KW D  D   + VL E
Sbjct: 329  DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388

Query: 698  TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 519
             NLQRYQHMIK+D+KPVV+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389  INLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448

Query: 518  RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 342
            R  +P G IS+LE+K     NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449  RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508

Query: 341  WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 162
            WC+ H  S +SDP+AGV    ++QRRTGDAFTYFGNTLVTMA  A C D    +C +FSG
Sbjct: 509  WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMDAVDCAIFSG 568

Query: 161  DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            DDSL +  +    D ++F SLFNME KVM   +PY+CSKFL+E    N  SVP
Sbjct: 569  DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVP 621


>gb|AEI54609.1| 2a protein [Cowpea chlorotic mottle virus]
          Length = 808

 Score =  409 bits (1050), Expect = e-111
 Identities = 216/413 (52%), Positives = 276/413 (66%), Gaps = 8/413 (1%)
 Frame = -1

Query: 1217 VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 1038
            V  CE   + +E D     P +    DR+SL+ L+     +LPTHA FDDT++QA  E G
Sbjct: 213  VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268

Query: 1037 DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 858
            D ++D  ++ ++Q   DWY+DP+ +Y+P L  G   RRIG+QK  L A++KRNADVPELA
Sbjct: 269  DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328

Query: 857  GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 699
             SV+I  VA   A+ F +A++ +     +   + VM+R   Y  KW D  D   + VL E
Sbjct: 329  DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388

Query: 698  TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 519
             NLQRYQHMIK+D+KPVV+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389  INLQRYQHMIKSDIKPVVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448

Query: 518  RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 342
            R  +P G IS+LE+K     NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449  RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508

Query: 341  WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 162
            WC+ H  S +SDP+AGV    ++QRRTGDAFTYFGNTLVTMA  A C D    +C +FSG
Sbjct: 509  WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMDAVDCAIFSG 568

Query: 161  DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            DDSL +  +    D ++F SLFNME KVM   +PY+CSKFL+E    N  SVP
Sbjct: 569  DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVP 621


>gb|AAN37632.1| 2a protein [Cowpea chlorotic mottle virus]
          Length = 808

 Score =  403 bits (1035), Expect = e-109
 Identities = 214/413 (51%), Positives = 275/413 (66%), Gaps = 8/413 (1%)
 Frame = -1

Query: 1217 VATCEPVMQITECDLELPIPILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENG 1038
            V  CE   + +E D     P +    DR+SL+ L+     +LPTHA FDDT++QA  E G
Sbjct: 213  VGVCEDTYRHSEAD----DPTMPQYHDRISLKSLEAAGHHMLPTHAYFDDTYYQALEELG 268

Query: 1037 DISLDFDRIRLKQYAGDWYKDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELA 858
            D ++D  ++ ++Q   DWY+DP+ +Y+P L  G   RRIG+QK  L A++KRNADVPELA
Sbjct: 269  DYNVDISKLSVRQSDVDWYRDPEKYYEPELSIGSFQRRIGTQKTVLTALKKRNADVPELA 328

Query: 857  GSVNIDEVAKWAADNFMKAFVVN-----VNPLVQVMTRMQAYMSKWADRVD--PLFVLGE 699
             SV+I  VA   A+ F +A++ +     +   + VM+R   Y  KW D  D   + VL E
Sbjct: 329  DSVDIKRVACEVAEKFKRAYLNHSGIGLLGQSMDVMSRGLEYHKKWKDHKDLTGVTVLSE 388

Query: 698  TNLQRYQHMIKTDVKPVVADGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNS 519
             NLQRYQ MIK+D+KP V+D ++LERAV ATITFH K V S FSP+FTA F+ F K+L S
Sbjct: 389  INLQRYQDMIKSDIKPGVSDTLHLERAVAATITFHGKGVTSCFSPYFTACFEKFSKALKS 448

Query: 518  RVRIPSGPISTLEMK-YGFKNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNW 342
            R  +P G IS+LE+K     NK+++E DLSKFDKSQGELHLEFQR ILL LG PA L NW
Sbjct: 449  RFVVPIGKISSLELKNVPLSNKWFLEADLSKFDKSQGELHLEFQREILLSLGFPAPLTNW 508

Query: 341  WCELHVRSYMSDPNAGVAFQCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSG 162
            WC+ H  S +SDP+AGV    ++QRRTGDAFTYFGNTLVTMA  A C D +  +C +FSG
Sbjct: 509  WCDFHRESMLSDPHAGVNMPVSFQRRTGDAFTYFGNTLVTMAMMAYCCDMNTVDCAIFSG 568

Query: 161  DDSLAVSNNPITGDTDLFASLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            DDSL +  +    D ++F SLFNME KVM   +PY+CSKFL+E    N  SVP
Sbjct: 569  DDSLLICKSKPHLDANVFQSLFNMEIKVMDPSLPYVCSKFLLETEMNNLVSVP 621


>gb|AHA10985.1| 2a protein [Tomato aspermy virus]
          Length = 828

 Score =  402 bits (1033), Expect = e-109
 Identities = 210/393 (53%), Positives = 269/393 (68%), Gaps = 7/393 (1%)
 Frame = -1

Query: 1160 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 981
            P LT  +DRV+++ LQ   D+ LPTH  +DDT+HQ F+EN D S+D DR+RLKQ      
Sbjct: 274  PELTRPTDRVTVDLLQAICDSTLPTHVCYDDTYHQTFIENADYSVDIDRVRLKQSDLLAK 333

Query: 980  KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 801
               +G  +P L +G   +RIG+ +E L AI+KRNADVPEL GSVN+  ++   A+ FM +
Sbjct: 334  VIDEGHLKPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLS 393

Query: 800  FV----VNVNPLVQVMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVAD 639
            F+    +  +  + +++   AYMSKW   +  D L  L   NLQ Y+HM+K+DVKP V D
Sbjct: 394  FMNGDKLCSSNFINIVSDFHAYMSKWQSILSYDDLPDLNAENLQFYEHMVKSDVKPSVTD 453

Query: 638  GMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGFK 462
             +N++R +PATITFH K + S FSP FTALF  FQ+ L  RV +P G IS+LE+K +   
Sbjct: 454  TLNIDRPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRVILPVGKISSLEIKDFSVL 513

Query: 461  NKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQ 282
            NK+ +EIDLSKFDKSQGELHL  Q  IL RLG P H+  WWC+ H  SY+ D  AGV+  
Sbjct: 514  NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMP 573

Query: 281  CAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFAS 102
             ++QRRTGDAFTYFGNTLVTM+ FA C+D SQF+ ++FSGDDSL  S     GD  LF S
Sbjct: 574  ISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTS 633

Query: 101  LFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            LFNME+KVM   VPYICSKFL+ D FGN+FSVP
Sbjct: 634  LFNMEAKVMEPSVPYICSKFLLTDDFGNTFSVP 666


>ref|NP_620761.1| 2a protein [Tomato aspermy virus] gi|137276|sp|P29035.1|RDRP_TAV
            RecName: Full=RNA-directed RNA polymerase 2a;
            Short=protein 2a gi|222668|dbj|BAA01514.1| 2a protein
            [Tomato aspermy virus] gi|17978218|emb|CAC86464.1| 2a
            protein [Tomato aspermy virus]
          Length = 828

 Score =  402 bits (1033), Expect = e-109
 Identities = 210/393 (53%), Positives = 269/393 (68%), Gaps = 7/393 (1%)
 Frame = -1

Query: 1160 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 981
            P LT  +DRV+++ LQ   D+ LPTH  +DDT+HQ F+EN D S+D DR+RLKQ      
Sbjct: 274  PELTRPTDRVTVDLLQAICDSTLPTHVCYDDTYHQTFIENADYSVDIDRVRLKQSDLLAK 333

Query: 980  KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 801
               +G  +P L +G   +RIG+ +E L AI+KRNADVPEL GSVN+  ++   A+ FM +
Sbjct: 334  VIDEGHLKPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLS 393

Query: 800  FV----VNVNPLVQVMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVAD 639
            F+    +  +  + +++   AYMSKW   +  D L  L   NLQ Y+HM+K+DVKP V D
Sbjct: 394  FMNGDKLCSSNFINIVSDFHAYMSKWQSVLSYDDLPDLNAENLQFYEHMVKSDVKPSVTD 453

Query: 638  GMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGFK 462
             +N++R +PATITFH K + S FSP FTALF  FQ+ L  RV +P G IS+LE+K +   
Sbjct: 454  TLNIDRPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRVILPVGKISSLEIKDFSVL 513

Query: 461  NKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQ 282
            NK+ +EIDLSKFDKSQGELHL  Q  IL RLG P H+  WWC+ H  SY+ D  AGV+  
Sbjct: 514  NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMP 573

Query: 281  CAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFAS 102
             ++QRRTGDAFTYFGNTLVTM+ FA C+D SQF+ ++FSGDDSL  S     GD  LF S
Sbjct: 574  ISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTS 633

Query: 101  LFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            LFNME+KVM   VPYICSKFL+ D FGN+FSVP
Sbjct: 634  LFNMEAKVMEPSVPYICSKFLLTDDFGNTFSVP 666


>gb|ADR82074.1| 2a protein [Tomato aspermy virus]
          Length = 828

 Score =  402 bits (1032), Expect = e-109
 Identities = 210/393 (53%), Positives = 269/393 (68%), Gaps = 7/393 (1%)
 Frame = -1

Query: 1160 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 981
            P LT  +DRV+++ LQ   D+ L TH R+DDT+HQ F+EN D S+D DR+RLKQ      
Sbjct: 274  PELTRPTDRVTVDLLQAVCDSTLLTHVRYDDTYHQTFIENADYSVDIDRVRLKQSDLLAK 333

Query: 980  KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 801
               +G  +P L +G   +RIG+ +E L AI+KRNADVPEL GSVN+  ++   A+ FM +
Sbjct: 334  VIDEGHLKPVLNTGSGQKRIGTTREVLCAIKKRNADVPELCGSVNLKRLSDDVAECFMLS 393

Query: 800  FV----VNVNPLVQVMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVAD 639
            F+    +  +  + +++   AYMSKW   +  D L  L   NLQ Y+HM+K+DVKP V D
Sbjct: 394  FMNGDKLCSSNFINIVSDFHAYMSKWQSVLSYDDLPDLNAENLQFYEHMVKSDVKPSVTD 453

Query: 638  GMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGFK 462
             +N++R +PATITFH K + S FSP FTALF  FQ+ L  RV +P G IS+LE+K +   
Sbjct: 454  TLNIDRPLPATITFHRKQLTSQFSPLFTALFQRFQRCLTKRVILPVGKISSLEIKDFSVL 513

Query: 461  NKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQ 282
            NK+ +EIDLSKFDKSQGELHL  Q  IL RLG P H+  WWC+ H  SY+ D  AGV+  
Sbjct: 514  NKFCLEIDLSKFDKSQGELHLMIQEGILNRLGCPVHISKWWCDFHRMSYIKDKRAGVSMP 573

Query: 281  CAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFAS 102
             ++QRRTGDAFTYFGNTLVTM+ FA C+D SQF+ ++FSGDDSL  S     GD  LF S
Sbjct: 574  ISFQRRTGDAFTYFGNTLVTMSMFAWCYDTSQFDKLIFSGDDSLGFSIKAPVGDPSLFTS 633

Query: 101  LFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            LFNME+KVM   VPYICSKFL+ D FGN+FSVP
Sbjct: 634  LFNMEAKVMEPSVPYICSKFLLTDDFGNTFSVP 666


>gb|ACF34994.1| 2a protein [Peanut stunt virus]
          Length = 834

 Score =  400 bits (1029), Expect = e-109
 Identities = 214/391 (54%), Positives = 266/391 (68%), Gaps = 11/391 (2%)
 Frame = -1

Query: 1142 SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDG- 966
            +DRVS+E LQ   D  LPTH  +DDT+HQ FVEN D + D D + LKQ   D     DG 
Sbjct: 262  TDRVSVESLQAVCDVSLPTHVCYDDTYHQVFVENADFTTDIDHLTLKQ--SDLIPKVDGG 319

Query: 965  -FYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVN 789
             + +P L +G  ++R+G+ KE L AI+KRNADVPEL+GSV++  ++K  A  F ++++ N
Sbjct: 320  NYLRPVLTTGSGSKRLGTTKEVLTAIKKRNADVPELSGSVDLTRISKAVAKRFQESYL-N 378

Query: 788  VNPLVQ-----VMTRMQAYMSKWADR---VDPLFVLGETNLQRYQHMIKTDVKPVVADGM 633
             N L Q     V+    AYM KWA      D L  L   NLQ Y+HM+K+DVKPVVAD +
Sbjct: 379  SNALAQSNFLNVVGNFHAYMQKWAASGLSYDDLPDLHAENLQFYEHMVKSDVKPVVADTL 438

Query: 632  NLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEM-KYGFKNK 456
            N++R VPATITFH K + S FSP F +LF+ FQ+ L  RV +P G IS+LEM K+   NK
Sbjct: 439  NVDRPVPATITFHAKGITSQFSPLFVSLFERFQRCLRGRVVVPVGKISSLEMDKFSVLNK 498

Query: 455  YYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQCA 276
            + +EIDLSKFDKSQGELHL  Q  IL  LG P  +  WWC+ H  SY+ D  AGV+   +
Sbjct: 499  HCLEIDLSKFDKSQGELHLMIQEEILNLLGCPVDVSKWWCDFHRYSYIKDKRAGVSMPIS 558

Query: 275  YQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFASLF 96
            +QRRTGDAFTYFGNTLVTMA F+ C+D  QF+ MLFSGDDSLA S NPI G +D F SLF
Sbjct: 559  FQRRTGDAFTYFGNTLVTMALFSWCYDTDQFDRMLFSGDDSLAFSLNPIEGKSDWFTSLF 618

Query: 95   NMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            NME+K M  P PYICSKFL+ D  GN+FSVP
Sbjct: 619  NMEAKNMDPPTPYICSKFLLTDELGNTFSVP 649


>ref|YP_002640501.1| 2a protein [Gayfeather mild mottle virus]
            gi|224492620|emb|CAT02557.1| 2a protein [Gayfeather mild
            mottle virus]
          Length = 777

 Score =  400 bits (1028), Expect = e-109
 Identities = 211/394 (53%), Positives = 267/394 (67%), Gaps = 8/394 (2%)
 Frame = -1

Query: 1160 PILTGRSDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWY 981
            P L   +DRV ++ +Q   D++LPTH  +DDT+HQ FVE+ D S+D DRIRLKQ      
Sbjct: 271  PSLARPTDRVDVDVVQAVCDSMLPTHVNYDDTYHQVFVEDSDYSVDIDRIRLKQSDLLPK 330

Query: 980  KDPDGFYQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKA 801
               DG   P L +G   +R+G+QKE   AI+KRNADVPEL  SVN+  +++  A+ F+ +
Sbjct: 331  VSDDGHMHPVLNTGSGHKRVGTQKEVHTAIKKRNADVPELGDSVNLTRLSEAVAERFISS 390

Query: 800  FVVNVNPLVQ-----VMTRMQAYMSKWADRV--DPLFVLGETNLQRYQHMIKTDVKPVVA 642
            ++ NVN LV      V+    AYM KW   +  D L  L   NLQ Y+HM+K+DVKP V 
Sbjct: 391  YM-NVNALVSSNFINVVGNFHAYMQKWHSSLSYDDLPDLNAENLQFYEHMVKSDVKPSVT 449

Query: 641  DGMNLERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMK-YGF 465
            D +N++R VPATITFH K + S FSP FTALF+ FQ+ L S+V +P G IS+LE++ +  
Sbjct: 450  DTLNVDRPVPATITFHKKQITSQFSPLFTALFERFQRCLRSKVVLPVGKISSLELEDFSV 509

Query: 464  KNKYYVEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAF 285
              K+ +EIDLSKFDKSQGELHL  Q  IL RLG PAH+  WWC+ H +SY+ D  AGV  
Sbjct: 510  IGKHCLEIDLSKFDKSQGELHLMIQEQILNRLGCPAHVSKWWCDFHRQSYIKDKRAGVGM 569

Query: 284  QCAYQRRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFA 105
              ++QRRTGDAFTYFGNTLVTMA F  C+D  QF+ MLFSGDDSLA S+    GD   F 
Sbjct: 570  ALSFQRRTGDAFTYFGNTLVTMALFCWCYDTEQFDRMLFSGDDSLAFSSIAPVGDPSKFT 629

Query: 104  SLFNMESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            +LFNME+KVM   VPYICSKFL+ D FG +FSVP
Sbjct: 630  TLFNMEAKVMEPSVPYICSKFLLTDEFGQTFSVP 663


>emb|CAP19050.1| 2a protein [Peanut stunt virus]
          Length = 834

 Score =  400 bits (1027), Expect = e-108
 Identities = 213/389 (54%), Positives = 264/389 (67%), Gaps = 9/389 (2%)
 Frame = -1

Query: 1142 SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGF 963
            +DRVS+E LQ   D  LPTH  +DDT+HQ FVEN D + D D + LKQ       D   +
Sbjct: 267  TDRVSIESLQAACDTSLPTHVCYDDTYHQVFVENADFTTDIDHMTLKQSDLIPRVDGGNY 326

Query: 962  YQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVNVN 783
             +P L +G  ++R+G+ KE L AI+KRNADVPEL+GSV++  ++K  A+ FMK+++ N N
Sbjct: 327  LKPVLNTGSGSKRLGTTKEVLTAIKKRNADVPELSGSVDLTRISKAVAEKFMKSYL-NGN 385

Query: 782  PLVQ-----VMTRMQAYMSKWADR---VDPLFVLGETNLQRYQHMIKTDVKPVVADGMNL 627
             L Q     V+    AYM KWA      D L  L   NLQ Y+HM+K+DVKPVV+D +N+
Sbjct: 386  VLAQSNFLNVVGNFHAYMQKWAASGLSYDDLPDLHAENLQFYEHMVKSDVKPVVSDTLNV 445

Query: 626  ERAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEM-KYGFKNKYY 450
            +R VPATITFH K + S FSP F +LF+ FQ+ L SRV +P G IS+LEM  Y   NKY 
Sbjct: 446  DRPVPATITFHAKGITSQFSPLFISLFERFQRCLRSRVIVPVGKISSLEMDNYSVLNKYC 505

Query: 449  VEIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQCAYQ 270
            +EIDLSKFDKSQGELHL  Q  IL  LG P  +  WWC+ H  SY+ D  AGV+   ++Q
Sbjct: 506  LEIDLSKFDKSQGELHLMIQEEILNLLGCPVPISKWWCDFHRYSYIKDKRAGVSMPISFQ 565

Query: 269  RRTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFASLFNM 90
            RRTGDAFTYFGNTLVTMA FA C+D   F  +LFSGDDSLA S NPI G +D F SLFNM
Sbjct: 566  RRTGDAFTYFGNTLVTMALFAWCYDTDHFNRLLFSGDDSLAFSLNPIEGRSDWFTSLFNM 625

Query: 89   ESKVMANPVPYICSKFLIEDSFGNSFSVP 3
            E+K M  P PYICSKFL+ D  G++FSVP
Sbjct: 626  EAKNMDPPTPYICSKFLLTDELGHTFSVP 654


>gb|AAA86113.1| 2a protein [Broad bean mottle virus]
          Length = 827

 Score =  399 bits (1026), Expect = e-108
 Identities = 218/448 (48%), Positives = 287/448 (64%), Gaps = 17/448 (3%)
 Frame = -1

Query: 1295 METSYGSHFTLVQEEF--IEECPAAAINVATCEPVMQITEC-------DLELPIPILTGR 1143
            +ET+ G  +  + EEF  IE+    ++N+    PV Q             E   P +   
Sbjct: 185  VETTMGHRYLALSEEFASIEDDYQVSLNLT--HPVEQRVSILHDTWNGFTEETHPKMPIY 242

Query: 1142 SDRVSLEKLQCTVDAILPTHARFDDTFHQAFVENGDISLDFDRIRLKQYAGDWYKDPDGF 963
             D+ S+E L+      L THA FDD+++Q F E+ D S DF R+++KQ   DWYKDPD F
Sbjct: 243  RDKASIESLEAAGHNALKTHAYFDDSYYQGFEESADFSSDFQRLKIKQSHVDWYKDPDKF 302

Query: 962  YQPNLLSGGCARRIGSQKEALIAIRKRNADVPELAGSVNIDEVAKWAADNFMKAFVVN-- 789
            ++P L  G  +RR+G+QK  L A++KRNADVPEL+  V+I +VA   A+ F ++++    
Sbjct: 303  FEPVLNFGASSRRVGTQKTVLTALKKRNADVPELSDVVDIHKVATEVANMFRQSYLNRDG 362

Query: 788  ---VNPLVQVMTRMQAYMSKWADR--VDPLFVLGETNLQRYQHMIKTDVKPVVADGMNLE 624
               +     +M +   Y  +W     +  + +L ETNLQRYQHMIK+DVKP V D +++E
Sbjct: 363  ADCLFESFNIMAKGLDYHKRWKSHKELQGVTLLCETNLQRYQHMIKSDVKPTVTDTLHVE 422

Query: 623  RAVPATITFHDKMVCSNFSPWFTALFDGFQKSLNSRVRIPSGPISTLEMKY-GFKNKYYV 447
            RAVPATITFH K V S FSP+FTA F+ F  +L  R  +P G IS+LE+K     NK+++
Sbjct: 423  RAVPATITFHGKGVTSCFSPFFTACFEKFSLALRERFIVPIGKISSLELKSKALNNKFFL 482

Query: 446  EIDLSKFDKSQGELHLEFQRLILLRLGLPAHLVNWWCELHVRSYMSDPNAGVAFQCAYQR 267
            E DLSKFDKSQGELHLEFQRLIL+ LG P  L NWWC+ H +S++ DP AGV+   ++QR
Sbjct: 483  EADLSKFDKSQGELHLEFQRLILINLGFPVPLTNWWCDFHRQSFLVDPQAGVSIPVSFQR 542

Query: 266  RTGDAFTYFGNTLVTMAEFACCFDCSQFECMLFSGDDSLAVSNNPITGDTDLFASLFNME 87
            RTGDAFTYFGNTLVTMA  A CFD S  E  +FSGDDSL +  +    D  +F SLFNME
Sbjct: 543  RTGDAFTYFGNTLVTMAMMAYCFDMSTAELAMFSGDDSLVICGSKPEFDPGVFQSLFNME 602

Query: 86   SKVMANPVPYICSKFLIEDSFGNSFSVP 3
             KVM   +PYICSKFL+E  FG+ FSVP
Sbjct: 603  VKVMDPSLPYICSKFLLESEFGDVFSVP 630