BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00028456
         (851 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG22121.1| polyprotein [Solanum melongena]                        370   e-100
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]          357   3e-96
gb|ABG22123.1| polyprotein [Prunus avium]                             338   1e-90
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              304   3e-80
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              303   5e-80
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              303   5e-80
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   303   7e-80
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   302   9e-80
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     302   9e-80
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]           302   1e-79
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              301   2e-79
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   300   3e-79
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        297   3e-78
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc...   297   4e-78
emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]   297   4e-78
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  296   5e-78
gb|AFB73912.1| polyprotein [Citrus sinensis]                          293   4e-77
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   292   9e-77
gb|AFB73911.1| polyprotein [Citrus sinensis]                          292   9e-77
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   291   2e-76

>gb|ABG22121.1| polyprotein [Solanum melongena]
          Length = 361

 Score =  370 bits (949), Expect = e-100
 Identities = 180/205 (87%), Positives = 190/205 (92%)
 Frame = -2

Query: 850 TKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVS 671
           +KPVSTPLAPHLKLS+QLSPK DEER+YM KVPYANAVGSLMYAMVCTR DISQAVSVVS
Sbjct: 157 SKPVSTPLAPHLKLSSQLSPKTDEEREYMAKVPYANAVGSLMYAMVCTRSDISQAVSVVS 216

Query: 670 RYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTT 491
           RYMHDPGKGHW AVKWILRYI NTVD+GLVFEQD  LG  +VGYCDSDYAGDLDKRRSTT
Sbjct: 217 RYMHDPGKGHWQAVKWILRYIKNTVDIGLVFEQDKSLGSCVVGYCDSDYAGDLDKRRSTT 276

Query: 490 GYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVH 311
           GYLFTLAK PVSWKSTLQ+TVALSTTEAEYMA++EAVKEAIWL  LLE+LGVGQKH+ VH
Sbjct: 277 GYLFTLAKGPVSWKSTLQATVALSTTEAEYMAITEAVKEAIWLHGLLEELGVGQKHLMVH 336

Query: 310 CDSQSAIHLAKNQVLHARTKHIDVR 236
            DSQSAIHLAKNQV HARTKHIDVR
Sbjct: 337 SDSQSAIHLAKNQVFHARTKHIDVR 361


>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
          Length = 297

 Score =  357 bits (916), Expect = 3e-96
 Identities = 177/254 (69%), Positives = 211/254 (83%)
 Frame = -2

Query: 850 TKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVS 671
           TK V TPLA H KLS+   P++ EERDYM  VPYA+ VGSL+YAMVCTRPDISQAVS+VS
Sbjct: 45  TKLVCTPLALHFKLSSSSCPRSQEERDYMACVPYASVVGSLIYAMVCTRPDISQAVSMVS 104

Query: 670 RYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTT 491
           RYMH+PGK  W AVKWILRY+  TVDVGL+F+++   GQ  VGYCDSD+AGDLDK+RST+
Sbjct: 105 RYMHNPGKSQWLAVKWILRYLYGTVDVGLLFKKN--CGQQCVGYCDSDFAGDLDKQRSTS 162

Query: 490 GYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVH 311
           GY+FTL    VSW+S LQST+ALSTTEAEY+A +EAVKEAIWL+ LL DLGV Q++I V 
Sbjct: 163 GYVFTLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVF 222

Query: 310 CDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSV 131
           CD+QSAI LAKNQ  HARTKHIDV+YH+VREI+E G +LL+KI T +NP+DMLTKVV+ V
Sbjct: 223 CDNQSAIFLAKNQTYHARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKVVSEV 282

Query: 130 KFKHCLYLINILHI 89
           KF+HCL LI IL +
Sbjct: 283 KFQHCLKLIQILRL 296


>gb|ABG22123.1| polyprotein [Prunus avium]
          Length = 276

 Score =  338 bits (867), Expect = 1e-90
 Identities = 163/205 (79%), Positives = 183/205 (89%)
 Frame = -2

Query: 850 TKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVS 671
           +KPVSTPLAPH KLSA +SP  DEE  YM ++PYA+AVGSLMYAMVCTRPDISQAVS+VS
Sbjct: 72  SKPVSTPLAPHFKLSASMSPNTDEESHYMAQIPYASAVGSLMYAMVCTRPDISQAVSIVS 131

Query: 670 RYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTT 491
           RYMH+PGKGHW AVKWILRYIL TVDVGL+F+QD   GQ +VGY DSDYAGDLDKRRSTT
Sbjct: 132 RYMHNPGKGHWQAVKWILRYILGTVDVGLLFQQDKVSGQCVVGYVDSDYAGDLDKRRSTT 191

Query: 490 GYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVH 311
           G++FT+A  PVSW+S LQSTVALSTTEAEYMAV+EA+KEAIWLQ LL+DLGV Q H+ V+
Sbjct: 192 GFVFTIAGGPVSWRSILQSTVALSTTEAEYMAVTEAIKEAIWLQGLLDDLGVQQDHVDVY 251

Query: 310 CDSQSAIHLAKNQVLHARTKHIDVR 236
           CDSQSAI+LAKNQV HARTKHIDVR
Sbjct: 252 CDSQSAIYLAKNQVHHARTKHIDVR 276


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  304 bits (778), Expect = 3e-80
 Identities = 151/251 (60%), Positives = 192/251 (76%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR
Sbjct: 1056 KPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSR 1115

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            +M DPGK HW+AVK I+RYI  T  V + F   G     + GY DSD+AGD DKR+STTG
Sbjct: 1116 FMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGYVDSDFAGDHDKRKSTTG 1172

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L+E+LG  Q+ ITV+C
Sbjct: 1173 YVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD +TK + + K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDK 1292

Query: 127  FKHCLYLINIL 95
            F  C  L  +L
Sbjct: 1293 FIWCRSLYGLL 1303


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  303 bits (776), Expect = 5e-80
 Identities = 149/244 (61%), Positives = 190/244 (77%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR
Sbjct: 1056 KPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSR 1115

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            +M DPGK HW+AVK I+RYI  T  V + F   G     + GY DSD+AGD DKR+STTG
Sbjct: 1116 FMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVWGYVDSDFAGDHDKRKSTTG 1172

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L+E+LG  Q+ ITV+C
Sbjct: 1173 YVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD++TK + + K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINTDK 1292

Query: 127  FKHC 116
            F  C
Sbjct: 1293 FVWC 1296


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  303 bits (776), Expect = 5e-80
 Identities = 149/244 (61%), Positives = 190/244 (77%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR
Sbjct: 1056 KPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSR 1115

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            +M DPGK HW+AVK I+RYI  T  V + F   G     + GY DSD+AGD DKR+STTG
Sbjct: 1116 FMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGYVDSDFAGDHDKRKSTTG 1172

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L+E+LG  Q+ ITV+C
Sbjct: 1173 YVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD++TK + + K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADK 1292

Query: 127  FKHC 116
            F  C
Sbjct: 1293 FVWC 1296


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  303 bits (775), Expect = 7e-80
 Identities = 145/251 (57%), Positives = 189/251 (75%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            K VSTP+APH KLSA   P  D E +YM +VPY++AVGSLMYAMVC+RPD+S A+S+VSR
Sbjct: 1085 KAVSTPIAPHFKLSAAQCPSIDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSR 1144

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            YM +PGK HW AV+WI RY+  T    L F   G+  +G++GY DSDYA DLD+RRS TG
Sbjct: 1145 YMSNPGKEHWRAVQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRRRSLTG 1201

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L  +L   +  I++HC
Sbjct: 1202 YVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC 1261

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + + KI T +NPADM+TK +   K
Sbjct: 1262 DSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAK 1321

Query: 127  FKHCLYLINIL 95
            F+ C  L+ ++
Sbjct: 1322 FELCSSLVGLI 1332


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  302 bits (774), Expect = 9e-80
 Identities = 144/251 (57%), Positives = 188/251 (74%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            K VSTP+APH KLSA   P  D E +YM +VPY++AVGSLMYAMVC+RPD+S A+S+VSR
Sbjct: 1085 KAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSR 1144

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            YM +PGK HW  V+WI RY+  T    L F   G+  +G++GY DSDYA DLD+RRS TG
Sbjct: 1145 YMSNPGKEHWRVVQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRRRSLTG 1201

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L  +L   +  I++HC
Sbjct: 1202 YVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC 1261

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + + KI T +NPADM+TK +   K
Sbjct: 1262 DSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAK 1321

Query: 127  FKHCLYLINIL 95
            F+ C  L+ ++
Sbjct: 1322 FELCSSLVGLI 1332


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  302 bits (774), Expect = 9e-80
 Identities = 148/242 (61%), Positives = 186/242 (76%), Gaps = 1/242 (0%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            K VS PLA H +LSA+  P + +E D M  VPYA+AVG LMYAM+CTRPD++QA+SVVS+
Sbjct: 1051 KVVSIPLAAHFRLSAEQRPSDQKEIDMMKNVPYASAVGCLMYAMICTRPDLAQAMSVVSK 1110

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIV-GYCDSDYAGDLDKRRSTT 491
            YM +PGK HW AVKWI +Y+ NT  +G++FE+  + G+  V G+ DSD+AGDLD+RRST 
Sbjct: 1111 YMSNPGKRHWEAVKWIFKYLKNTRQLGIMFER--RQGEACVAGFVDSDFAGDLDRRRSTA 1168

Query: 490  GYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVH 311
            GY+FT    PVSWK+TLQ+  ALSTTEAEYMA++EA KEAIWL  L   LGV Q+ + V 
Sbjct: 1169 GYVFTCGGGPVSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVK 1228

Query: 310  CDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSV 131
            CDSQSAIHLAKNQV HARTKHID RYH +R+ +E G I++EK+HT +N AD LTK V+  
Sbjct: 1229 CDSQSAIHLAKNQVFHARTKHIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTKPVSVE 1288

Query: 130  KF 125
            K+
Sbjct: 1289 KY 1290


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
          Length = 1335

 Score =  302 bits (773), Expect = 1e-79
 Identities = 144/251 (57%), Positives = 189/251 (75%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            K VSTP+APH KLSA   P  D E +YM +VPY++AVGSLMYAMVC+RPD+S A+S+VSR
Sbjct: 1087 KAVSTPIAPHFKLSAAQCPSTDAEIEYMSRVPYSSAVGSLMYAMVCSRPDLSYAMSLVSR 1146

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            YM +PGK HW A++WI RY+  T    L F   G+  +G++GY DSDYA DLD+RRS TG
Sbjct: 1147 YMSNPGKEHWRALQWIFRYLRGTTYSCLKF---GRTDKGLIGYVDSDYAADLDRRRSLTG 1203

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FT+    VSW++TLQS VALSTTEAEYMA+ EA KE IWL+ L  +L   +  I++HC
Sbjct: 1204 YVFTIGSCAVSWRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHC 1263

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSAI+L K+Q+ H RTKHID++YHFVR+++EEG + + KI T +NPADM+TK +   K
Sbjct: 1264 DSQSAIYLTKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAK 1323

Query: 127  FKHCLYLINIL 95
            F+ C  L+ ++
Sbjct: 1324 FELCSSLVGLI 1334


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  301 bits (772), Expect = 2e-79
 Identities = 148/244 (60%), Positives = 189/244 (77%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            KP+STPL  + KLS+ +SP N+ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV VVSR
Sbjct: 1056 KPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSR 1115

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            +M DPGK HW+AVK I+RYI  T  V + F   G     + GY DSD+AGD DKR+STTG
Sbjct: 1116 FMADPGKEHWNAVKRIMRYIKGTSGVAVCF---GGSELTVRGYVDSDFAGDHDKRKSTTG 1172

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FTL    VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q L+E+LG  Q+ ITV+C
Sbjct: 1173 YVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYC 1232

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD++TK + + K
Sbjct: 1233 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADK 1292

Query: 127  FKHC 116
            F  C
Sbjct: 1293 FVWC 1296


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  300 bits (769), Expect = 3e-79
 Identities = 150/251 (59%), Positives = 190/251 (75%)
 Frame = -2

Query: 850  TKPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVS 671
            +KP+ TP A ++ L+A  +P+++EE++YM +VPYA+AVGSLMYAMVCTRPD++ AVSVVS
Sbjct: 1059 SKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVS 1118

Query: 670  RYMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTT 491
            R+M  PG+ HW AVK I RY+  T DVGL++  D +    + GY DSDYAGD+D RRS T
Sbjct: 1119 RFMGQPGREHWQAVKRIFRYLRGTSDVGLIYGGDTQCL--VTGYSDSDYAGDVDTRRSMT 1176

Query: 490  GYLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVH 311
            GY+FTL  + VSWK+TLQ TV LSTTEAEYMA++EA KE IWL+ L+ DLG+     TV+
Sbjct: 1177 GYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVY 1236

Query: 310  CDSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSV 131
            CDS SAI LAK+QV H RTKHIDVRYHF+R    E  I ++K+ T +NPADM TK V   
Sbjct: 1237 CDSLSAICLAKDQVHHERTKHIDVRYHFLR---SEKRIKVKKVGTADNPADMFTKPVPQS 1293

Query: 130  KFKHCLYLINI 98
            KF+HCL L+NI
Sbjct: 1294 KFQHCLDLLNI 1304


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  297 bits (761), Expect = 3e-78
 Identities = 146/250 (58%), Positives = 187/250 (74%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            KPVSTPLA H +LS+ L P++D   +YM +VPY++AVGSLMYAM+C+RPD+S A+SVVSR
Sbjct: 933  KPVSTPLAAHFRLSSDLCPQSDYNIEYMSRVPYSSAVGSLMYAMICSRPDLSHALSVVSR 992

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            YM +PGK HW  V+WI RY+  T    L F   G+   G+VGY DSD+AGDLD+RRS TG
Sbjct: 993  YMANPGKEHWKDVQWIFRYLHGTSSACLQF---GRSRDGLVGYVDSDFAGDLDRRRSLTG 1049

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FT+    VSWK++LQ+TVALSTTEAEYMA+SEA KEAIWL+ L  +L      I + C
Sbjct: 1050 YVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFC 1109

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSAI L K+Q+ H RTKHIDVRYHF+R ++ EG + + KI T +NPADM+TK V + K
Sbjct: 1110 DSQSAICLTKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPATK 1169

Query: 127  FKHCLYLINI 98
            F+ C  L+ +
Sbjct: 1170 FELCSSLVGV 1179


>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1138

 Score =  297 bits (760), Expect = 4e-78
 Identities = 145/250 (58%), Positives = 185/250 (74%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            KPVSTPLA H +LS+ L P++D + +YM +VPY++ VGSLMYAMVC+RPD+S A+SVVSR
Sbjct: 890  KPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSVVGSLMYAMVCSRPDLSHALSVVSR 949

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            YM +PGK HW AV+WI RY+  T    L F   G+   G+VGY DSD+AGDLD+RRS  G
Sbjct: 950  YMANPGKEHWKAVQWIFRYLCGTSSACLQF---GRSRDGLVGYVDSDFAGDLDRRRSLAG 1006

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FT+    VSWK+ LQ+TVALSTTEAEYMA+SEA KE IWL+ L  +L      I + C
Sbjct: 1007 YVFTIGGCAVSWKANLQATVALSTTEAEYMAISEACKETIWLRGLYTELCGVTSCINIFC 1066

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSAI L K+Q+ H RTKHIDVRYHF+R ++ EG + + KI T +NPADM+TK V + K
Sbjct: 1067 DSQSAICLTKDQMFHERTKHIDVRYHFIRSVITEGDVKVCKISTHDNPADMMTKPVPATK 1126

Query: 127  FKHCLYLINI 98
            F+ C  L+ +
Sbjct: 1127 FELCSSLVGV 1136


>emb|CAN79684.1| hypothetical protein VITISV_003855 [Vitis vinifera]
          Length = 406

 Score =  297 bits (760), Expect = 4e-78
 Identities = 142/247 (57%), Positives = 187/247 (75%)
 Frame = -2

Query: 847 KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
           KPVSTPLA H +LS    PK D E + M KVPYA+AVG LMYAMVCTR D++ AVSVVS+
Sbjct: 160 KPVSTPLANHFRLSTSQCPKTDGEVNDMSKVPYASAVGCLMYAMVCTRLDLAHAVSVVSK 219

Query: 667 YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
           ++ +PG+ +W AVKWI RY+  T D G+ F +  +    + GY D+DYAGDLD+RRST G
Sbjct: 220 FLSNPGRMNWDAVKWIFRYLRGTTDYGITFSKQ-QSDPSVKGYVDADYAGDLDERRSTIG 278

Query: 487 YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
           Y+FTL   P+ WKS +QS VAL TT++EYMA++E  KE++WL  L+++LG+ Q  + ++ 
Sbjct: 279 YVFTLGGGPICWKSMIQSLVALYTTKSEYMAIAETTKESLWLTGLVKELGIQQGGVQLYF 338

Query: 307 DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
           D+QSAI+L KNQV HARTKHIDVR+H + E++  G +LL+K+HT+EN ADMLTK VT+ K
Sbjct: 339 DNQSAIYLEKNQVYHARTKHIDVRFHKISELVSSGELLLKKVHTSENAADMLTKPVTTEK 398

Query: 127 FKHCLYL 107
           FKHCL L
Sbjct: 399 FKHCLKL 405


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  296 bits (759), Expect = 5e-78
 Identities = 149/243 (61%), Positives = 185/243 (76%)
 Frame = -2

Query: 844  PVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSRY 665
            P+STPL  + KLS+ + P ++ ER  M +VPYA+AVGSLMYAM+CTRPDI+QAV  VSR+
Sbjct: 1057 PISTPLPVNYKLSSSMIPSSEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGTVSRF 1116

Query: 664  MHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTGY 485
            M DPGK HW+AVK ILRYI  T    L F   G     I GY DSD+AGDLDKR+STTGY
Sbjct: 1117 MADPGKEHWNAVKRILRYIRGTSGAALCF---GGSEFTIRGYVDSDFAGDLDKRKSTTGY 1173

Query: 484  LFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHCD 305
            +FTLA   VSW S LQ+ VALSTTEAEYMA ++A KEAIW Q LLE+LG  Q+ ITV+CD
Sbjct: 1174 VFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQACKEAIWTQRLLEELGHKQQKITVYCD 1233

Query: 304  SQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVKF 125
            S SA+H+A+N   H+RTKHI V+YHFVRE++EEG++ ++KIHT +N AD++TK + S KF
Sbjct: 1234 SPSALHIARNPAFHSRTKHIGVQYHFVREVVEEGSVNMQKIHTKDNLADVMTKPINSDKF 1293

Query: 124  KHC 116
              C
Sbjct: 1294 IWC 1296


>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  293 bits (751), Expect = 4e-77
 Identities = 148/241 (61%), Positives = 185/241 (76%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            K +STPL  + KLS+ + P N+ ER  M +VPYA+AVGSLM+AM+CTRPDI+QAV  VSR
Sbjct: 1060 KSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGAVSR 1119

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            YM +PG  HW AVK ILRYI  T +V L +   G     + GY DSD+AGDLDKR+STTG
Sbjct: 1120 YMANPGGEHWIAVKRILRYIRGTSNVALCY---GGSEFTVRGYVDSDFAGDLDKRKSTTG 1176

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FTLA A VSW S LQ+ VALSTTEAEYMA ++A KEAIW+Q LLE+LG  Q+ I V C
Sbjct: 1177 YVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKEAIWIQRLLEELGHKQQKIPVFC 1236

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSA+H+A+N   H+RTKHI V+YHFVRE++E+G++ L+KIHT EN AD+LTK + + K
Sbjct: 1237 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKSINTDK 1296

Query: 127  F 125
            F
Sbjct: 1297 F 1297


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  292 bits (748), Expect = 9e-77
 Identities = 145/248 (58%), Positives = 184/248 (74%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            KPVSTPLA H +LS+ L P++D + +YM +VPY++AVGSLMYAMVC+RPD+S A+SVVSR
Sbjct: 1291 KPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGSLMYAMVCSRPDLSHALSVVSR 1350

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            YM +PGK HW AV+WI RY+  T    L F   G+   G+VGY DSD+AGDLD+ RS  G
Sbjct: 1351 YMANPGKEHWKAVQWIFRYLRGTSSACLQF---GRSRDGLVGYVDSDFAGDLDRGRSLAG 1407

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FT+    VSWK++LQ+TVALSTTEAEYMA+SEA KEAIWL+ L   L      I + C
Sbjct: 1408 YVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFC 1467

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSAI L K+Q+ H RTKHIDVRYHF+R ++ EG + + KI   +NPADM+TK V + K
Sbjct: 1468 DSQSAICLTKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATK 1527

Query: 127  FKHCLYLI 104
            F+ C  L+
Sbjct: 1528 FELCSSLV 1535


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  292 bits (748), Expect = 9e-77
 Identities = 148/241 (61%), Positives = 185/241 (76%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            K +ST L  + KLS+ + P N+ ER  M +VPYA+AVGSLM+AM+CTRPDI+QAV VVSR
Sbjct: 1060 KSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYASAVGSLMFAMICTRPDIAQAVGVVSR 1119

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            YM +PG  HW AVK ILRYI  T DV L +   G     + GY DSD+AGDLDKR+STTG
Sbjct: 1120 YMANPGGEHWIAVKRILRYIRGTSDVALCY---GGSEFTVRGYVDSDFAGDLDKRKSTTG 1176

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            Y+FTLA A VSW S LQ+ VALSTTEAEYMA ++A K+AIW+Q LLE+LG  Q+ I V C
Sbjct: 1177 YVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQACKKAIWIQRLLEELGHKQQKILVFC 1236

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSA+H+A+N   H+RTKHI V+YHFVRE++E+G++ L+KIHT EN AD+LTK + + K
Sbjct: 1237 DSQSALHIARNPAFHSRTKHIGVQYHFVREVVEDGSVDLQKIHTKENLADVLTKPINTDK 1296

Query: 127  F 125
            F
Sbjct: 1297 F 1297


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  291 bits (745), Expect = 2e-76
 Identities = 145/250 (58%), Positives = 185/250 (74%)
 Frame = -2

Query: 847  KPVSTPLAPHLKLSAQLSPKNDEERDYMDKVPYANAVGSLMYAMVCTRPDISQAVSVVSR 668
            KPVSTPLA HLKLS ++ P   EE+  M KVPY++AVGSLMYAMVCTRPDI+ AV VVSR
Sbjct: 1079 KPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSR 1138

Query: 667  YMHDPGKGHWHAVKWILRYILNTVDVGLVFEQDGKLGQGIVGYCDSDYAGDLDKRRSTTG 488
            ++ +PGK HW AVKWILRY+  T    L F     +   + GY D+D AGD+D R+S+TG
Sbjct: 1139 FLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPI---LKGYTDADMAGDIDNRKSSTG 1195

Query: 487  YLFTLAKAPVSWKSTLQSTVALSTTEAEYMAVSEAVKEAIWLQSLLEDLGVGQKHITVHC 308
            YLFT +   +SW+S LQ  VALSTTEAEY+A +E  KE IWL+  L++LG+ QK   V+C
Sbjct: 1196 YLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYC 1255

Query: 307  DSQSAIHLAKNQVLHARTKHIDVRYHFVREILEEGTILLEKIHTTENPADMLTKVVTSVK 128
            DSQSAI L+KN + HARTKHIDVRYH++RE++++ ++ + KI T ENPADMLTKVV   K
Sbjct: 1256 DSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNK 1315

Query: 127  FKHCLYLINI 98
            F+ C  L+ +
Sbjct: 1316 FELCKELVGM 1325