BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00028352
         (414 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containi...   204   1e-50
ref|XP_004240634.1| PREDICTED: pentatricopeptide repeat-containi...   200   2e-49
ref|XP_006364563.1| PREDICTED: pentatricopeptide repeat-containi...   197   1e-48
gb|EPS65318.1| hypothetical protein M569_09460 [Genlisea aurea]       196   2e-48
ref|XP_004310156.1| PREDICTED: pentatricopeptide repeat-containi...   193   2e-47
gb|EMJ28460.1| hypothetical protein PRUPE_ppa017811mg [Prunus pe...   192   5e-47
ref|XP_006483972.1| PREDICTED: pentatricopeptide repeat-containi...   189   3e-46
ref|XP_006438222.1| hypothetical protein CICLE_v10031251mg [Citr...   189   3e-46
ref|XP_002530052.1| pentatricopeptide repeat-containing protein,...   184   1e-44
gb|EXB82495.1| hypothetical protein L484_027670 [Morus notabilis]     182   4e-44
ref|XP_002312667.1| pentatricopeptide repeat-containing family p...   181   9e-44
gb|EOY00680.1| Pentatricopeptide repeat superfamily protein isof...   178   6e-43
ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containi...   176   3e-42
ref|XP_004504137.1| PREDICTED: pentatricopeptide repeat-containi...   172   4e-41
ref|XP_002889980.1| pentatricopeptide repeat-containing protein ...   172   5e-41
ref|NP_172763.1| pentatricopeptide repeat-containing protein [Ar...   171   1e-40
ref|XP_006304861.1| hypothetical protein CARUB_v10012598mg [Caps...   170   2e-40
ref|XP_006417164.1| hypothetical protein EUTSA_v10007381mg [Eutr...   164   1e-38
ref|XP_003531325.2| PREDICTED: pentatricopeptide repeat-containi...   161   7e-38
ref|XP_004967498.1| PREDICTED: pentatricopeptide repeat-containi...   154   2e-35

>ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
           gi|296081374|emb|CBI16807.3| unnamed protein product
           [Vitis vinifera]
          Length = 519

 Score =  204 bits (518), Expect = 1e-50
 Identities = 96/138 (69%), Positives = 118/138 (85%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           +SYVKAGLIDQA++ FDEM++SNCR+FSIDYNRF+GVL++  RF+L+E YYD M P+GFS
Sbjct: 17  SSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRMIPQGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           LNSFTYSRFIS LC+VKNF LI +L +DMD L  VPDIWA+NIY+NLLC EN +D AL V
Sbjct: 77  LNSFTYSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGV 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
           +  M EKGR+PD+V+YTI
Sbjct: 137 VQTMVEKGREPDIVTYTI 154



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 33/136 (24%), Positives = 61/136 (44%)
 Frame = -1

Query: 408 YVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLN 229
           + +AG ID+A  +   M ++ C    + YN  L         E +E     M   G   +
Sbjct: 229 FCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPD 288

Query: 228 SFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVLS 49
            ++Y+  +  LC+    +    +  +    + + D+ ++N  +  LC+ +    A K+  
Sbjct: 289 VYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKRAYKLFE 348

Query: 48  LMGEKGRQPDVVSYTI 1
            MG KG  PDVV++TI
Sbjct: 349 EMGGKGITPDVVTFTI 364


>ref|XP_004240634.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Solanum lycopersicum]
          Length = 511

 Score =  200 bits (508), Expect = 2e-49
 Identities = 92/138 (66%), Positives = 119/138 (86%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           +SYVK GL+++A+QVFDEM+QS+CR+FSIDYNR +GVLI+   F+L+E YY+ M P GFS
Sbjct: 17  SSYVKTGLVNEALQVFDEMTQSDCRVFSIDYNRIIGVLIRTSHFDLAEGYYNEMKPVGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           LNS TYS+FI  LC+VKNF+LI RL +DMD + IVP+ WA+N+Y+NLLCSENLVD AL++
Sbjct: 77  LNSLTYSKFICGLCKVKNFDLISRLLNDMDRVGIVPNFWAYNMYLNLLCSENLVDIALEL 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
           + +MGEKGR+PDVVSYTI
Sbjct: 137 IRVMGEKGREPDVVSYTI 154


>ref|XP_006364563.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like isoform X1 [Solanum tuberosum]
          Length = 511

 Score =  197 bits (501), Expect = 1e-48
 Identities = 90/138 (65%), Positives = 119/138 (86%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           ++YVK GL+++A+QVFD+M+QS+CR+FSIDYNR +GVLI+   F+L+E YY+ M P GFS
Sbjct: 17  SNYVKTGLVNEALQVFDKMTQSDCRVFSIDYNRIIGVLIRTSHFDLAEGYYNEMKPVGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           LNS TYS+FI  LC+VKNF+LI RL +DMD + IVP+ WA+N+Y+NLLCSENLVD AL++
Sbjct: 77  LNSLTYSKFICGLCKVKNFDLISRLLNDMDRVGIVPNFWAYNMYLNLLCSENLVDIALEL 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
           + +MGEKGR+PDVVSYTI
Sbjct: 137 IRVMGEKGREPDVVSYTI 154


>gb|EPS65318.1| hypothetical protein M569_09460 [Genlisea aurea]
          Length = 519

 Score =  196 bits (499), Expect = 2e-48
 Identities = 100/139 (71%), Positives = 118/139 (84%), Gaps = 2/139 (1%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQ-SNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGF 238
           A+YVKAGLID+A+QVFD+M + S+ R+FS DYNRFLGVLIK RRF+ SEYYY+ M  +G 
Sbjct: 18  ATYVKAGLIDEAVQVFDDMDRRSDFRIFSADYNRFLGVLIKFRRFDESEYYYNHMMRRGL 77

Query: 237 SLNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCS-ENLVDDAL 61
           SL+SFTYSRFIS LC V+NFELI  LFDDMD L IVPD+WAFNIY+NLLCS E+ VD+AL
Sbjct: 78  SLHSFTYSRFISGLCGVRNFELIFALFDDMDVLGIVPDLWAFNIYINLLCSEEDFVDEAL 137

Query: 60  KVLSLMGEKGRQPDVVSYT 4
           +VL LM EKGR PDVV+YT
Sbjct: 138 RVLRLMAEKGRDPDVVTYT 156


>ref|XP_004310156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 516

 Score =  193 bits (490), Expect = 2e-47
 Identities = 91/136 (66%), Positives = 109/136 (80%)
 Frame = -1

Query: 408 YVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLN 229
           YVK GLID A+ VFDEM+QSNCR+FS+DYNRF+GVL+K+ R++L+E+YY  M P+GFSL 
Sbjct: 20  YVKTGLIDHALHVFDEMTQSNCRVFSVDYNRFIGVLVKHSRYDLAEHYYYEMAPQGFSLT 79

Query: 228 SFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVLS 49
            FTYSRFIS LC V NF LI +L  DMD L  VPDIWAFNIY+NLLC EN +  AL+V  
Sbjct: 80  PFTYSRFISGLCNVNNFTLIEKLLRDMDRLGSVPDIWAFNIYLNLLCQENRIHYALEVFD 139

Query: 48  LMGEKGRQPDVVSYTI 1
            M +KGR+PDVVSYTI
Sbjct: 140 RMADKGREPDVVSYTI 155


>gb|EMJ28460.1| hypothetical protein PRUPE_ppa017811mg [Prunus persica]
          Length = 541

 Score =  192 bits (487), Expect = 5e-47
 Identities = 90/136 (66%), Positives = 114/136 (83%)
 Frame = -1

Query: 408 YVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLN 229
           YVK GLIDQA+QVFDEM++S+CR+FSIDYNRF+GVL+++ R++L+E+YY  M P+GFSL+
Sbjct: 19  YVKTGLIDQALQVFDEMTRSDCRVFSIDYNRFIGVLVRHSRYDLAEHYYYEMVPQGFSLS 78

Query: 228 SFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVLS 49
           +FTYSRFIS LC+++NF LI +L  DMD L  VPDIWAFNIY+NLLC EN    AL+V  
Sbjct: 79  AFTYSRFISGLCKIRNFTLIEKLIRDMDRLGAVPDIWAFNIYLNLLCQENRAHFALEVFH 138

Query: 48  LMGEKGRQPDVVSYTI 1
            M +KGR+PDVVSYTI
Sbjct: 139 RMVDKGREPDVVSYTI 154



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 30/137 (21%), Positives = 61/137 (44%)
 Frame = -1

Query: 411 SYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSL 232
           ++ +A    +A ++F+EM Q       + +   +   ++    +++    D M   G   
Sbjct: 333 AFCRAHRTGRAYKLFEEMGQKGTMPDVVTFTILIEAFLREGSSDIANKLLDQMTVMGLLP 392

Query: 231 NSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVL 52
           +   Y+  +  LC+     +   +F DM    I PD  +FN  +N LC  + V +A+ + 
Sbjct: 393 DRIFYTTIVDHLCKSGKIAMAYSVFSDMLEKGIAPDAVSFNALINGLCKASRVSEAMHLY 452

Query: 51  SLMGEKGRQPDVVSYTI 1
             M  +G  PD V++ +
Sbjct: 453 EEMQNRGCCPDEVTFKL 469


>ref|XP_006483972.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like isoform X1 [Citrus sinensis]
           gi|568860947|ref|XP_006483973.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like isoform X2 [Citrus sinensis]
          Length = 517

 Score =  189 bits (481), Expect = 3e-46
 Identities = 92/138 (66%), Positives = 111/138 (80%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           ++ VKAGLIDQA+ VFDEM+QSNCR+FSIDYNRF+GVLI++ RF+L ++YY  M+P GFS
Sbjct: 17  SNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           L  FTYSRFIS LCEVKNF LI  L D+MD L  +PDIWAFNIY+NLL  EN +D AL+V
Sbjct: 77  LTPFTYSRFISGLCEVKNFTLINILLDNMDKLGYLPDIWAFNIYLNLLFHENRIDLALEV 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
              M  KGR+PD V+YTI
Sbjct: 137 FHKMVSKGREPDFVTYTI 154



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 30/137 (21%), Positives = 63/137 (45%)
 Frame = -1

Query: 411 SYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSL 232
           ++ K G   +A ++F+EM +    +  + +   +   ++     ++E   + M     S 
Sbjct: 333 AFCKGGQTRRAYKLFEEMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSP 392

Query: 231 NSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVL 52
           +   Y+  I  LC+ +       +F DM    I PD+ ++N  +N LC  + V +A+ + 
Sbjct: 393 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLY 452

Query: 51  SLMGEKGRQPDVVSYTI 1
             M  +G  PD V++ +
Sbjct: 453 EEMQIRGAHPDEVTFKL 469


>ref|XP_006438222.1| hypothetical protein CICLE_v10031251mg [Citrus clementina]
           gi|557540418|gb|ESR51462.1| hypothetical protein
           CICLE_v10031251mg [Citrus clementina]
          Length = 517

 Score =  189 bits (481), Expect = 3e-46
 Identities = 92/138 (66%), Positives = 111/138 (80%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           ++ VKAGLIDQA+ VFDEM+QSNCR+FSIDYNRF+GVLI++ RF+L ++YY  M+P GFS
Sbjct: 17  SNLVKAGLIDQAVHVFDEMTQSNCRVFSIDYNRFIGVLIRHSRFDLVQFYYQQMHPLGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           L  FTYSRFIS LCEVKNF LI  L D+MD L  +PDIWAFNIY+NLL  EN +D AL+V
Sbjct: 77  LTPFTYSRFISGLCEVKNFTLINILLDNMDKLGYLPDIWAFNIYLNLLFHENRIDLALEV 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
              M  KGR+PD V+YTI
Sbjct: 137 FHKMVSKGREPDFVTYTI 154



 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 30/137 (21%), Positives = 63/137 (45%)
 Frame = -1

Query: 411 SYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSL 232
           ++ K G   +A ++F+EM +    +  + +   +   ++     ++E   + M     S 
Sbjct: 333 AFCKGGQTRRAYKLFEEMRRRGIELDVVTFTILIKAFLREGSSAMAEKLLNQMRGMNLSP 392

Query: 231 NSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVL 52
           +   Y+  I  LC+ +       +F DM    I PD+ ++N  +N LC  + V +A+ + 
Sbjct: 393 DRILYTTIIDCLCKSREIGTAYGVFLDMVEQGITPDVISYNALINGLCKSSRVSEAMHLY 452

Query: 51  SLMGEKGRQPDVVSYTI 1
             M  +G  PD V++ +
Sbjct: 453 EEMQIRGAHPDEVTFKL 469


>ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530468|gb|EEF32352.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 554

 Score =  184 bits (467), Expect = 1e-44
 Identities = 88/138 (63%), Positives = 111/138 (80%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           A YVKAGLID+A+QVFDEMSQSNCR+FSIDYNRF+GVLI + RF+L+ +YY  M  +GFS
Sbjct: 17  AGYVKAGLIDKAVQVFDEMSQSNCRVFSIDYNRFIGVLINHSRFDLANHYYSQMGTRGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           L+SFTYSRFI+ LC+VKNF  I  L  DM++L  +PDIWAFNIY++LL  E  +D AL+V
Sbjct: 77  LSSFTYSRFITGLCKVKNFTFIDELLHDMETLNCLPDIWAFNIYLHLLFVEGRIDLALEV 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
              + + GR+PDVV+YTI
Sbjct: 137 FEKIVKNGRKPDVVTYTI 154



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 36/137 (26%), Positives = 63/137 (45%)
 Frame = -1

Query: 411 SYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSL 232
           ++ K G    A ++F+EM Q       + +  F+   +    F +++   D M   G S 
Sbjct: 334 AFCKIGDTTSAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSP 393

Query: 231 NSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVL 52
           +   Y+  I  LC+    E+   +F DM    I PD+ +FN  +N  C  + V +A+ + 
Sbjct: 394 DCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLY 453

Query: 51  SLMGEKGRQPDVVSYTI 1
             M  +G  PD V+Y +
Sbjct: 454 EEMQNRGSYPDEVTYKL 470



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 36/166 (21%)
 Frame = -1

Query: 396 GLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLNSFTY 217
           G ID A++VF+++ ++  +   + Y   +  + K ++F+ +  ++  M  KGFS ++   
Sbjct: 128 GRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKAC 187

Query: 216 SRFISRLCEVKNFELILRLFDD-MDSLRIV------------------------------ 130
              +  LC+ +  +L   L  D M S R+                               
Sbjct: 188 GAIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMR 247

Query: 129 -----PDIWAFNIYMNLLCSENLVDDALKVLSLMGEKGRQPDVVSY 7
                PD+  +N+++N  C E ++DDA K+L LM   G +PDV SY
Sbjct: 248 RNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSY 293


>gb|EXB82495.1| hypothetical protein L484_027670 [Morus notabilis]
          Length = 513

 Score =  182 bits (462), Expect = 4e-44
 Identities = 85/135 (62%), Positives = 108/135 (80%)
 Frame = -1

Query: 405 VKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLNS 226
           VK GLID A+Q+FDEMS S+CR+FS+DYNRF+GVL ++ R +L+E+YY  M P+GFSL  
Sbjct: 20  VKTGLIDHAVQLFDEMSHSDCRVFSVDYNRFIGVLARHSRLDLAEHYYHKMAPQGFSLYP 79

Query: 225 FTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVLSL 46
           FTYSRFIS LC VKNF L+ +L +DMD L  +PDIWAFNIY+N+LC E+ V  AL+V   
Sbjct: 80  FTYSRFISALCAVKNFLLVEKLLEDMDKLGCIPDIWAFNIYLNVLCGEHRVQLALEVFRR 139

Query: 45  MGEKGRQPDVVSYTI 1
           M E+GR+PDVV+YTI
Sbjct: 140 MVERGREPDVVTYTI 154



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 34/127 (26%), Positives = 58/127 (45%)
 Frame = -1

Query: 387 DQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLNSFTYSRF 208
           D+A  +  +  +S      + YN  +G   K  R   +   ++ M  KG   +  T++  
Sbjct: 306 DKAYLLMVDSMESKGLANVVSYNTIIGAFCKLLRVRRAYQLFEEMRQKGIEPDVVTFTIL 365

Query: 207 ISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVLSLMGEKGR 28
           I     V + ++  RL D M  + ++PD   + I ++ LC    +  A  V S M E+G 
Sbjct: 366 IKAFLSVGSSDVAKRLLDQMTGMGLLPDCLFYTIIVDHLCKAGKIGMAHSVFSDMVERGI 425

Query: 27  QPDVVSY 7
            PDV+SY
Sbjct: 426 TPDVISY 432


>ref|XP_002312667.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|222852487|gb|EEE90034.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 512

 Score =  181 bits (459), Expect = 9e-44
 Identities = 87/138 (63%), Positives = 107/138 (77%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           ASYVKAGLID A++VFDEM+ S CR+F IDYNRF+GVLI++ RF+L+ +YY  M P GFS
Sbjct: 17  ASYVKAGLIDYAVKVFDEMTLSECRVFGIDYNRFIGVLIRHSRFDLAHHYYSKMAPLGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           L+SFTYSRFIS LC+ K F  I  L  DM+ L  VPDIWAFNIY+NLL  EN  + AL+V
Sbjct: 77  LSSFTYSRFISGLCQTKEFTFIDNLLKDMEKLHCVPDIWAFNIYLNLLFRENREESALEV 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
              M E+GR+PDVV++TI
Sbjct: 137 FGRMVERGREPDVVTFTI 154


>gb|EOY00680.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma
           cacao] gi|508708784|gb|EOY00681.1| Pentatricopeptide
           repeat superfamily protein isoform 1 [Theobroma cacao]
           gi|508708785|gb|EOY00682.1| Pentatricopeptide repeat
           superfamily protein isoform 1 [Theobroma cacao]
           gi|508708786|gb|EOY00683.1| Pentatricopeptide repeat
           superfamily protein isoform 1 [Theobroma cacao]
          Length = 516

 Score =  178 bits (452), Expect = 6e-43
 Identities = 84/135 (62%), Positives = 106/135 (78%)
 Frame = -1

Query: 405 VKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLNS 226
           VK GL +QAI +FD+M+QS+CR+F +DYNRF+GVL+++ RF+L+EYYY  M P+GFSL  
Sbjct: 20  VKNGLTNQAISMFDQMTQSDCRVFGLDYNRFIGVLLRDSRFDLAEYYYFQMFPQGFSLTP 79

Query: 225 FTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVLSL 46
           FTYSRFIS LC VKNF  I  L +DMD L  VPDIWAFNIY+NLLC E  ++ AL+V   
Sbjct: 80  FTYSRFISALCPVKNFNFIELLLNDMDKLNYVPDIWAFNIYLNLLCREKKIELALEVFHS 139

Query: 45  MGEKGRQPDVVSYTI 1
           + +KGR PDVV+YTI
Sbjct: 140 LVKKGRDPDVVTYTI 154



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 31/137 (22%), Positives = 64/137 (46%)
 Frame = -1

Query: 411 SYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSL 232
           ++ K G I +A ++F+EM +       + +   +   +     ++++   D M+  G   
Sbjct: 334 AFCKGGHIGKAYKLFEEMGRKGIAPDVVTFTTLIKACLTEGSSDIAKALLDRMSGMGLLP 393

Query: 231 NSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVL 52
           +   Y+  I  LC+    E+   +FDDM    + PD+ ++N  +N  C  N   +A+ + 
Sbjct: 394 DCIFYTAIIDHLCKNGKVEMAHSVFDDMIKQGVNPDVVSYNALINGFCKSNRASEAIHLY 453

Query: 51  SLMGEKGRQPDVVSYTI 1
             M  +G  PD V++ +
Sbjct: 454 EEMQTRGFSPDEVTFKL 470


>ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
           gi|449494962|ref|XP_004159696.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  176 bits (446), Expect = 3e-42
 Identities = 87/135 (64%), Positives = 105/135 (77%)
 Frame = -1

Query: 405 VKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLNS 226
           VK GLID+AI++FDEM+QS+C + S DYNRF+GVLI   RF+L+E YY  M P+GFSL  
Sbjct: 20  VKVGLIDEAIRIFDEMTQSDCPVTSRDYNRFIGVLISRSRFDLAESYYSRMIPQGFSLTP 79

Query: 225 FTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVLSL 46
           FTYSRFIS LCE+KNF LI RL +DM  L  +PDIWAFNIY+NLL  ENL++ ALK    
Sbjct: 80  FTYSRFISALCEIKNFGLIGRLLEDMKQLGYLPDIWAFNIYLNLLFRENLLELALKFFDE 139

Query: 45  MGEKGRQPDVVSYTI 1
           M  KGR+PDVV+YTI
Sbjct: 140 MVAKGREPDVVTYTI 154


>ref|XP_004504137.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cicer arietinum]
          Length = 516

 Score =  172 bits (436), Expect = 4e-41
 Identities = 87/137 (63%), Positives = 105/137 (76%), Gaps = 1/137 (0%)
 Frame = -1

Query: 408 YVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDS-MNPKGFSL 232
           YVKAGLID AI++FDEMSQ+N R FSIDYNRF+GVLI++   +L++ YY   + P GFSL
Sbjct: 19  YVKAGLIDTAIKLFDEMSQTNSRPFSIDYNRFIGVLIRHSHLDLAQSYYRRHVIPNGFSL 78

Query: 231 NSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVL 52
             FTYSRFI+ LC VKNF LI  L  DMD+L  VPDIWAFNIY+NLLC EN ++ AL++ 
Sbjct: 79  TPFTYSRFIAALCSVKNFSLIDYLLRDMDALGFVPDIWAFNIYLNLLCRENQLETALQLF 138

Query: 51  SLMGEKGRQPDVVSYTI 1
             M  KGR+PDVVSY I
Sbjct: 139 RTMPLKGREPDVVSYNI 155



 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 38/134 (28%), Positives = 60/134 (44%)
 Frame = -1

Query: 408 YVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLN 229
           + KA  +D+A     +  Q+      + YN  +    K RR E     ++ M  KG   +
Sbjct: 300 FCKANQVDRAYLTMVKRMQTKGMCDVVSYNTIIAAFCKARRIERGYELFEEMRRKGIQPD 359

Query: 228 SFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVLS 49
             T++  I    +    ++  +L D M ++ IVPD+  +   ++ LC    VD A  V  
Sbjct: 360 VITFTVLIEAFFKEGGSDVAKKLLDQMTTMGIVPDLIFYTTIVDRLCKAWKVDIAHGVFC 419

Query: 48  LMGEKGRQPDVVSY 7
            M E G  PDVVSY
Sbjct: 420 DMVENGVSPDVVSY 433



 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 33/138 (23%), Positives = 67/138 (48%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           A++ KA  I++  ++F+EM +   +   I +   +    K    ++++   D M   G  
Sbjct: 333 AAFCKARRIERGYELFEEMRRKGIQPDVITFTVLIEAFFKEGGSDVAKKLLDQMTTMGIV 392

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
            +   Y+  + RLC+    ++   +F DM    + PD+ ++N  +N  C  + V DA+ +
Sbjct: 393 PDLIFYTTIVDRLCKAWKVDIAHGVFCDMVENGVSPDVVSYNALINGFCKASRVMDAMCL 452

Query: 54  LSLMGEKGRQPDVVSYTI 1
              M +KG  PD V++ +
Sbjct: 453 YDEMQDKGLYPDGVTFKL 470


>ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297335822|gb|EFH66239.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 517

 Score =  172 bits (435), Expect = 5e-41
 Identities = 85/138 (61%), Positives = 105/138 (76%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           A+ VK+G+ID A+QVFDEM  S+ R+FS DYNRF+GVL+K  RFEL+E  Y  M P GFS
Sbjct: 17  ANLVKSGMIDNAVQVFDEMRHSSYRVFSSDYNRFIGVLVKESRFELAEAIYRDMMPMGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           L  FTYSRFIS LC+VK FELI  L  DM++L  +PDIWAFNIY++LLC EN V  A++ 
Sbjct: 77  LIPFTYSRFISGLCKVKKFELIDALLRDMETLGFIPDIWAFNIYLDLLCRENKVGFAVQT 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
              M ++GR+PDVVSYTI
Sbjct: 137 FFCMVQRGREPDVVSYTI 154


>ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g13040, mitochondrial; Flags: Precursor
           gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis
           thaliana] gi|332190841|gb|AEE28962.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 517

 Score =  171 bits (432), Expect = 1e-40
 Identities = 82/138 (59%), Positives = 105/138 (76%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           A+ VK+G+ID A+QVFDEM  S+ R+FS DYNRF+GVL++  RFEL+E  Y  M P GFS
Sbjct: 17  ANLVKSGMIDNAVQVFDEMRHSSYRVFSFDYNRFIGVLVRESRFELAEAIYWDMKPMGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           L  FTYSRFIS LC+VK F+LI  L  DM++L  +PDIWAFN+Y++LLC EN V  A++ 
Sbjct: 77  LIPFTYSRFISGLCKVKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQT 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
              M ++GR+PDVVSYTI
Sbjct: 137 FFCMVQRGREPDVVSYTI 154



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 32/135 (23%), Positives = 63/135 (46%)
 Frame = -1

Query: 411 SYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSL 232
           ++ +A    +A ++F+EM Q    M  + Y   +   ++     +++   D M   G S 
Sbjct: 334 TFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSP 393

Query: 231 NSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVL 52
           +   Y+  +  LC+  N +    +F+DM    I PD  ++N  ++ LC    V +A+K+ 
Sbjct: 394 DRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLF 453

Query: 51  SLMGEKGRQPDVVSY 7
             M  K   PD +++
Sbjct: 454 EDMKGKECCPDELTF 468


>ref|XP_006304861.1| hypothetical protein CARUB_v10012598mg [Capsella rubella]
           gi|482573572|gb|EOA37759.1| hypothetical protein
           CARUB_v10012598mg [Capsella rubella]
          Length = 517

 Score =  170 bits (431), Expect = 2e-40
 Identities = 84/138 (60%), Positives = 104/138 (75%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           A  VK+G+ID A+QVFDEM  S+ R+FS DYNRF+GVL+K  RFEL+E  Y  M P GFS
Sbjct: 17  AKLVKSGIIDNAVQVFDEMRHSSYRVFSSDYNRFIGVLVKESRFELAEAIYWDMKPMGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           L  FTYSRFIS LC+VK F+LI  L  DM++L  +PDIWAFNIY++LLC EN V  A++ 
Sbjct: 77  LIPFTYSRFISGLCKVKKFDLIDALLRDMETLGFIPDIWAFNIYLDLLCRENKVGFAVQT 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
              M ++GR+PDVVSYTI
Sbjct: 137 FFCMVQRGREPDVVSYTI 154



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/135 (24%), Positives = 63/135 (46%)
 Frame = -1

Query: 411 SYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSL 232
           +Y +A    +A ++F+EM Q       + Y   +   ++  +  +++   D M   G S 
Sbjct: 334 TYCRASNTRKAYKLFEEMRQKGIVTNVVTYTSLIKAFLREGKSSVAKKLLDQMTELGLSP 393

Query: 231 NSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVL 52
           +   Y+  ++ LC+  N +    +F DM   RI PD  ++N  +  LC    V +A+K+ 
Sbjct: 394 DRIFYTTILNHLCKSGNIDKAYGVFSDMIEHRITPDAISYNSLICGLCRACRVTEAIKLF 453

Query: 51  SLMGEKGRQPDVVSY 7
             M  K   PD +++
Sbjct: 454 EDMQSKECCPDELTF 468


>ref|XP_006417164.1| hypothetical protein EUTSA_v10007381mg [Eutrema salsugineum]
           gi|557094935|gb|ESQ35517.1| hypothetical protein
           EUTSA_v10007381mg [Eutrema salsugineum]
          Length = 517

 Score =  164 bits (415), Expect = 1e-38
 Identities = 81/138 (58%), Positives = 102/138 (73%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           A  VK+G+ID A+QVFDE+  S+ R+FS DYNRF+GVL+K  RFEL+E  Y  M P GFS
Sbjct: 17  AYLVKSGMIDNAVQVFDELRHSSFRVFSSDYNRFIGVLVKESRFELAEALYRDMTPMGFS 76

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           L  FTYSRFIS LC+V+ F+LI  L  DM++L  +PDIWAFNIY++LLC E  V  A++ 
Sbjct: 77  LIPFTYSRFISGLCKVRKFDLIDALLRDMETLGYIPDIWAFNIYLDLLCREREVGFAVQT 136

Query: 54  LSLMGEKGRQPDVVSYTI 1
              M  +GR+PDVVSYTI
Sbjct: 137 FFCMVRRGREPDVVSYTI 154


>ref|XP_003531325.2| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like isoform X1 [Glycine max]
           gi|571471241|ref|XP_006585252.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like isoform X2 [Glycine max]
          Length = 521

 Score =  161 bits (408), Expect = 7e-38
 Identities = 82/139 (58%), Positives = 103/139 (74%), Gaps = 4/139 (2%)
 Frame = -1

Query: 405 VKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDS-MNPKGFSLN 229
           VKAGLI+QAI +FD+M++SNCR+FS+DYNRF+GVL+++ R  L+ +YY   + P+GFSL 
Sbjct: 21  VKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRGFSLL 80

Query: 228 SFTYSRFISRLCEVKN---FELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALK 58
            FTYSRFIS LC   N     LI  L  DMDSL  VPDIWAFN Y+NLLC +N ++ AL+
Sbjct: 81  PFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALE 140

Query: 57  VLSLMGEKGRQPDVVSYTI 1
           +   M  KGR PDVVSYTI
Sbjct: 141 LFHSMPSKGRDPDVVSYTI 159



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 36/134 (26%), Positives = 61/134 (45%)
 Frame = -1

Query: 408 YVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFSLN 229
           + KA ++D+A  +  E  Q+      + YN  +    K RR       ++ M  KG   +
Sbjct: 304 FCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPD 363

Query: 228 SFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKVLS 49
             T++  I       +  ++ +L D+M  +R++PD   +   ++ LC    VD A  V  
Sbjct: 364 MVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFR 423

Query: 48  LMGEKGRQPDVVSY 7
            M E G  PDV+SY
Sbjct: 424 DMVENGVNPDVISY 437



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 24/79 (30%), Positives = 42/79 (53%)
 Frame = -1

Query: 243 GFSLNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDA 64
           G  +NS  Y+  I   C +   +  +++   M     VPD+  +NI +N  C E +VD+A
Sbjct: 219 GVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEA 278

Query: 63  LKVLSLMGEKGRQPDVVSY 7
           ++++  M   G +PD+ SY
Sbjct: 279 VRLVETMERSGVEPDLYSY 297


>ref|XP_004967498.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Setaria italica]
          Length = 662

 Score =  154 bits (388), Expect = 2e-35
 Identities = 75/137 (54%), Positives = 92/137 (67%)
 Frame = -1

Query: 414 ASYVKAGLIDQAIQVFDEMSQSNCRMFSIDYNRFLGVLIKNRRFELSEYYYDSMNPKGFS 235
           ++YV+AG  D  IQ FD+M  S CR F +DYNRF+GVL+KN  F+L E YYD    KGF 
Sbjct: 165 SNYVRAGKFDSVIQTFDDMVTSGCREFGVDYNRFIGVLVKNCCFDLVEKYYDMALDKGFC 224

Query: 234 LNSFTYSRFISRLCEVKNFELILRLFDDMDSLRIVPDIWAFNIYMNLLCSENLVDDALKV 55
           L  FTYSR+IS LC+    EL+  L  DMD     PDIWA NIY++ LC +N + DALK+
Sbjct: 225 LTPFTYSRWISALCQSNRIELVEELLADMDRFGCFPDIWACNIYVDYLCRQNRLPDALKM 284

Query: 54  LSLMGEKGRQPDVVSYT 4
           L  MG KG  PDVV+YT
Sbjct: 285 LEKMGIKGTGPDVVTYT 301