BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00027923
         (463 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   117   2e-37
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   120   5e-37
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   119   9e-37
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           115   3e-36
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   111   3e-35
gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   110   3e-35
gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   110   3e-35
ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit...   108   1e-34
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   110   2e-34
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   110   2e-34
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   107   3e-34
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   111   7e-34
ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [A...   110   9e-34
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   106   4e-33
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   100   2e-31
ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Caps...   104   1e-30
gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus...    96   4e-30
ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc...    97   1e-29
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   101   2e-29
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   100   2e-29

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis
           vinifera] gi|296090438|emb|CBI40257.3| unnamed protein
           product [Vitis vinifera]
          Length = 476

 Score =  117 bits (294), Expect(2) = 2e-37
 Identities = 58/97 (59%), Positives = 79/97 (81%)
 Frame = -2

Query: 399 RFLKIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVI 220
           R  ++ AKDLM++GD+I LP +V+ + PS+  +++   N+EE+ F+H+LELYKD A+IV+
Sbjct: 140 RLKRVAAKDLMNLGDQILLPITVE-EFPSE--KHEYHCNDEEINFVHNLELYKDPAIIVV 196

Query: 219 NKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           NKPPG+PVQGG+GIK SLDELAA YLRYD SE PRL+
Sbjct: 197 NKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLV 233



 Score = 63.5 bits (153), Expect(2) = 2e-37
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRDSSGIL+MGRTQ S TILHSIFREKTF
Sbjct: 233 VHRLDRDSSGILIMGRTQTSATILHSIFREKTF 265


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
           [Solanum tuberosum]
          Length = 467

 Score =  120 bits (301), Expect(2) = 5e-37
 Identities = 59/94 (62%), Positives = 78/94 (82%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AK+ M++GD+IFLP +V  K PS+ V     S+EEE KF+HSLELYKD  ++V+NKP
Sbjct: 133 RVSAKESMNVGDRIFLPITVQ-KFPSEKVVYYP-SSEEERKFVHSLELYKDPEIVVVNKP 190

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PGMPVQGG+GIK SLDELAAKY+R++YSE+PRL+
Sbjct: 191 PGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLV 224



 Score = 59.7 bits (143), Expect(2) = 5e-37
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRD SG+LVMGRTQLS + LHSIFREKTF
Sbjct: 224 VHRLDRDCSGLLVMGRTQLSASALHSIFREKTF 256


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
           lycopersicum]
          Length = 467

 Score =  119 bits (299), Expect(2) = 9e-37
 Identities = 60/94 (63%), Positives = 77/94 (81%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AK+ M++GD+IFLP +V  K PS+ V     S+EEE KF+HSLELYKDA +IV+NKP
Sbjct: 133 RVSAKESMNVGDRIFLPITVQ-KFPSEKVVYYP-SSEEERKFVHSLELYKDAEIIVVNKP 190

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PGMPVQGG+GIK SLDELAAKY+ + YSE+PRL+
Sbjct: 191 PGMPVQGGIGIKRSLDELAAKYMSHQYSEAPRLV 224



 Score = 59.7 bits (143), Expect(2) = 9e-37
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRD SG+LVMGRTQLS + LHSIFREKTF
Sbjct: 224 VHRLDRDCSGLLVMGRTQLSASALHSIFREKTF 256


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  115 bits (289), Expect(2) = 3e-36
 Identities = 57/97 (58%), Positives = 73/97 (75%)
 Frame = -2

Query: 399 RFLKIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVI 220
           R  ++ AKD +++GDKIFLP SV      K    + F NEEE+KFI SLELYKD A++V+
Sbjct: 134 RLRRVSAKDSLNLGDKIFLPISVKELPVEK---KECFCNEEEVKFIRSLELYKDPAIVVV 190

Query: 219 NKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           NKPPG+PVQGG+GIK+SLD+LA   L YDY+E PRL+
Sbjct: 191 NKPPGLPVQGGIGIKTSLDQLAVTCLSYDYTEPPRLV 227



 Score = 61.6 bits (148), Expect(2) = 3e-36
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRD SGILVMGRTQ S T+LHSIFREKTF
Sbjct: 227 VHRLDRDCSGILVMGRTQTSATVLHSIFREKTF 259


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 536

 Score =  111 bits (278), Expect(2) = 3e-35
 Identities = 57/94 (60%), Positives = 68/94 (72%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AKDLM++GD+IFLP SV      K    +    E+E  FI  LELYKD A+IV+NKP
Sbjct: 204 RVAAKDLMNVGDRIFLPISVQALPFEK---QKCHCGEKEANFIRGLELYKDEAIIVVNKP 260

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PGMPVQGG+GIKSS DELAA  L YDYSE PRL+
Sbjct: 261 PGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLV 294



 Score = 62.8 bits (151), Expect(2) = 3e-35
 Identities = 29/33 (87%), Positives = 31/33 (93%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRDSSGILVMGRTQ ST +LHS+FREKTF
Sbjct: 294 VHRLDRDSSGILVMGRTQTSTMVLHSVFREKTF 326


>gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  110 bits (276), Expect(2) = 3e-35
 Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 4/98 (4%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSV----DGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIV 223
           ++ AKD M++GD+I LP SV    + K      + + + +EEE+ FI SLELYKD A+IV
Sbjct: 143 RVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIV 202

Query: 222 INKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           INKPPGMPVQGG+GIK SLDELAA  L YD+SE PRL+
Sbjct: 203 INKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLV 240



 Score = 63.5 bits (153), Expect(2) = 3e-35
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRDSSGILVMGRTQ S T+LHSIFREKTF
Sbjct: 240 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 272


>gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  110 bits (276), Expect(2) = 3e-35
 Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 4/98 (4%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSV----DGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIV 223
           ++ AKD M++GD+I LP SV    + K      + + + +EEE+ FI SLELYKD A+IV
Sbjct: 143 RVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIV 202

Query: 222 INKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           INKPPGMPVQGG+GIK SLDELAA  L YD+SE PRL+
Sbjct: 203 INKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLV 240



 Score = 63.5 bits (153), Expect(2) = 3e-35
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRDSSGILVMGRTQ S T+LHSIFREKTF
Sbjct: 240 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 272


>ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
           X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1|
           PREDICTED: RNA pseudouridine synthase 4,
           mitochondrial-like isoform X2 [Citrus sinensis]
          Length = 362

 Score =  108 bits (270), Expect(2) = 1e-34
 Identities = 56/94 (59%), Positives = 74/94 (78%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AKD + +GD+IFLP S+  +SPS+  + +    EEE++FI SLELYKD+A+IVINKP
Sbjct: 29  RVAAKDSLKLGDRIFLPISIQ-ESPSR--KEKCPCTEEEVEFIQSLELYKDSAIIVINKP 85

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
            GMPVQGG+GI+ S+DELAA  L YDYSE PRL+
Sbjct: 86  HGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLV 119



 Score = 63.5 bits (153), Expect(2) = 1e-34
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRDSSGILVMGRTQ S T+LHSIFREKTF
Sbjct: 119 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 151


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  110 bits (276), Expect(2) = 2e-34
 Identities = 54/94 (57%), Positives = 72/94 (76%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AKD++++GD+IFLP SV   S  KT   + + N+EE  F+HSL L+KD A++VINKP
Sbjct: 144 RVAAKDILNVGDQIFLPMSVQVFSTEKT---RDYCNKEEETFMHSLVLHKDPAILVINKP 200

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PG+PVQGG+G+K SLDELAA  L Y YSE PRL+
Sbjct: 201 PGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLV 234



 Score = 60.8 bits (146), Expect(2) = 2e-34
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRDSSGIL+MGRT  ST++LHS+FREKTF
Sbjct: 234 VHRLDRDSSGILIMGRTSTSTSLLHSVFREKTF 266


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
           sativus]
          Length = 466

 Score =  110 bits (276), Expect(2) = 2e-34
 Identities = 54/94 (57%), Positives = 72/94 (76%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AKD++++GD+IFLP SV   S  KT   + + N+EE  F+HSL L+KD A++VINKP
Sbjct: 139 RVAAKDILNVGDQIFLPMSVQVFSTEKT---RDYCNKEEETFMHSLVLHKDPAILVINKP 195

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PG+PVQGG+G+K SLDELAA  L Y YSE PRL+
Sbjct: 196 PGLPVQGGIGVKRSLDELAASCLSYGYSEPPRLV 229



 Score = 60.8 bits (146), Expect(2) = 2e-34
 Identities = 27/33 (81%), Positives = 31/33 (93%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRDSSGIL+MGRT  ST++LHS+FREKTF
Sbjct: 229 VHRLDRDSSGILIMGRTSTSTSLLHSVFREKTF 261


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
           gi|557524859|gb|ESR36165.1| hypothetical protein
           CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  107 bits (267), Expect(2) = 3e-34
 Identities = 56/94 (59%), Positives = 73/94 (77%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AKD + +GD+IFLP S+  +SPS+  + +    EEE+ FI SLELYKD+A+IVINKP
Sbjct: 161 RVAAKDSLKLGDRIFLPISIQ-ESPSR--KEKCPCTEEEVGFIQSLELYKDSAIIVINKP 217

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
            GMPVQGG+GI+ S+DELAA  L YDYSE PRL+
Sbjct: 218 HGMPVQGGIGIRRSIDELAATCLTYDYSEPPRLV 251



 Score = 63.5 bits (153), Expect(2) = 3e-34
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRDSSGILVMGRTQ S T+LHSIFREKTF
Sbjct: 251 VHRLDRDSSGILVMGRTQTSATVLHSIFREKTF 283


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
           gi|550331407|gb|EEE87831.2| hypothetical protein
           POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  111 bits (278), Expect(2) = 7e-34
 Identities = 58/97 (59%), Positives = 68/97 (70%)
 Frame = -2

Query: 399 RFLKIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVI 220
           R  ++ AKD MD+GD+IFLP SV      K        NEEE+ FI  LELYKDAA+IV+
Sbjct: 136 RLKRVAAKDSMDVGDRIFLPISVKVLPAEK---QDCHCNEEEINFIRGLELYKDAAIIVV 192

Query: 219 NKPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           NKPPGMPVQGG+GIK SLDEL+A     DYSE PRL+
Sbjct: 193 NKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLV 229



 Score = 58.2 bits (139), Expect(2) = 7e-34
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKT 5
           VHRLDRD SGILVMGRTQ S T+LH+IFREKT
Sbjct: 229 VHRLDRDCSGILVMGRTQTSATVLHAIFREKT 260


>ref|XP_006847251.1| hypothetical protein AMTR_s00015p00025410 [Amborella trichopoda]
           gi|548850328|gb|ERN08832.1| hypothetical protein
           AMTR_s00015p00025410 [Amborella trichopoda]
          Length = 457

 Score =  110 bits (274), Expect(2) = 9e-34
 Identities = 53/94 (56%), Positives = 73/94 (77%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AKD ++ GD+IFLP +V+   P+  VE+    N+EEM++I SLE+YKDAA++V+NKP
Sbjct: 126 RVFAKDTLNSGDRIFLPITVN---PAVEVEDDYICNKEEMEYIRSLEVYKDAAIVVVNKP 182

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PG+PVQGG G+K SLD L A  L+YDYSE PRL+
Sbjct: 183 PGLPVQGGTGVKLSLDVLVASSLKYDYSEVPRLV 216



 Score = 59.3 bits (142), Expect(2) = 9e-34
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKT 5
           VHRLD+DSSGILVMGRTQ STT+LHSIFR+KT
Sbjct: 216 VHRLDQDSSGILVMGRTQESTTLLHSIFRDKT 247


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  106 bits (264), Expect(2) = 4e-33
 Identities = 56/94 (59%), Positives = 69/94 (73%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AKD ++IGD+IFLP SV      K    +S   EEE+ FI  LELYKD A+IV+NKP
Sbjct: 144 RVGAKDALNIGDRIFLPFSVREFREEK---QESGCTEEELNFIRGLELYKDPAIIVLNKP 200

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PGMPVQGG+GIK SLD+LAA  L +DYSE PRL+
Sbjct: 201 PGMPVQGGIGIKWSLDKLAAACLCFDYSEPPRLV 234



 Score = 60.8 bits (146), Expect(2) = 4e-33
 Identities = 28/32 (87%), Positives = 31/32 (96%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKT 5
           VHRLDRDSSGILVMGRTQ+S TILHS+FRE+T
Sbjct: 234 VHRLDRDSSGILVMGRTQMSATILHSVFREET 265


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 476

 Score =  100 bits (249), Expect(2) = 2e-31
 Identities = 53/94 (56%), Positives = 67/94 (71%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++  KD M++GD+I LP SV      K  + +   +EEE +FI SL LYKD A+IVINKP
Sbjct: 132 RVGTKDSMNLGDRICLPISVKEFPDHK--QKEGHCSEEEAEFIRSLVLYKDPAIIVINKP 189

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PG+PVQGG+GIK SLDELAA  L YD S+ PRL+
Sbjct: 190 PGLPVQGGIGIKRSLDELAATCLSYDLSQPPRLV 223



 Score = 61.2 bits (147), Expect(2) = 2e-31
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKTF 2
           VHRLDRD SGILVMGRTQ S T+LHS+FREKTF
Sbjct: 223 VHRLDRDCSGILVMGRTQTSATVLHSVFREKTF 255


>ref|XP_006297582.1| hypothetical protein CARUB_v10013603mg [Capsella rubella]
           gi|482566291|gb|EOA30480.1| hypothetical protein
           CARUB_v10013603mg [Capsella rubella]
          Length = 476

 Score =  104 bits (260), Expect(2) = 1e-30
 Identities = 52/95 (54%), Positives = 72/95 (75%), Gaps = 1/95 (1%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFS-NEEEMKFIHSLELYKDAAMIVINK 214
           ++ AK+ +++GD+I+LP SVD  +P    + +SF  +EEE KF+ SL LYKD ++IV+NK
Sbjct: 137 RVAAKESLNVGDRIYLPLSVDNDAPPPPAKKESFRCSEEERKFVCSLVLYKDPSIIVLNK 196

Query: 213 PPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           P GM VQGG GIK+S+DELAA  L +D SESPRL+
Sbjct: 197 PHGMAVQGGTGIKTSIDELAATCLTFDKSESPRLV 231



 Score = 53.9 bits (128), Expect(2) = 1e-30
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKT 5
           VHRLDRD SG+LV+ RTQ + T+LHSIFREKT
Sbjct: 231 VHRLDRDCSGLLVLARTQTAATVLHSIFREKT 262


>gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris]
          Length = 432

 Score = 95.9 bits (237), Expect(2) = 4e-30
 Identities = 47/94 (50%), Positives = 68/94 (72%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFSNEEEMKFIHSLELYKDAAMIVINKP 211
           ++ AKD ++ GD+I LP+SV  K P+ T +  S    +++ FI +L ++KD A++V+NKP
Sbjct: 99  RVAAKDTLNSGDRILLPQSVQQK-PTPTRKPHSSLTPQQINFIRTLVIHKDPAILVLNKP 157

Query: 210 PGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PGMPVQGG+ IK SLD +AA  L Y+YSE PRL+
Sbjct: 158 PGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLV 191



 Score = 61.2 bits (147), Expect(2) = 4e-30
 Identities = 29/32 (90%), Positives = 30/32 (93%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKT 5
           VHRLDRD SGILVMGRTQ STT+LHSIFREKT
Sbjct: 191 VHRLDRDCSGILVMGRTQTSTTVLHSIFREKT 222


>ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer
           arietinum]
          Length = 458

 Score = 97.4 bits (241), Expect(2) = 1e-29
 Identities = 48/95 (50%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSPSKTVENQSFS-NEEEMKFIHSLELYKDAAMIVINK 214
           ++ AKD ++ GD+IFLP SV  +   +    Q  +   +++KF+ SL +YKD A +V+NK
Sbjct: 121 RVGAKDTLNSGDRIFLPNSVKQQHQHQQTPKQPLTLTPKQIKFMRSLVIYKDPATVVLNK 180

Query: 213 PPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           PPGMPVQGG+ IK SLD LAA  L YDYS+ PRL+
Sbjct: 181 PPGMPVQGGINIKWSLDALAASSLNYDYSQPPRLV 215



 Score = 58.2 bits (139), Expect(2) = 1e-29
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKT 5
           VHRLDRD SGILVMGRTQ ST +LHSIFR+KT
Sbjct: 215 VHRLDRDCSGILVMGRTQTSTVVLHSIFRDKT 246


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
           gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
           pseudouridine synthase 4, mitochondrial; AltName:
           Full=RNA pseudouridylate synthase 4; AltName:
           Full=RNA-uridine isomerase 4; Flags: Precursor
           gi|11994467|dbj|BAB02469.1| unnamed protein product
           [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
           thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
           synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  101 bits (251), Expect(2) = 2e-29
 Identities = 51/96 (53%), Positives = 74/96 (77%), Gaps = 2/96 (2%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSP-SKTVENQSFS-NEEEMKFIHSLELYKDAAMIVIN 217
           ++ AK+ +++GD+I+LP SVD  +P +   + +SF  ++EE KF+ SL LYKD A+IV+N
Sbjct: 137 RVAAKESLNVGDRIYLPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLN 196

Query: 216 KPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           KP G+ VQGG GIK+S+DELAA  L++D SESPRL+
Sbjct: 197 KPHGLAVQGGSGIKTSIDELAASCLKFDKSESPRLV 232



 Score = 53.9 bits (128), Expect(2) = 2e-29
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKT 5
           VHRLDRD SG+LV+ RTQ + T+LHSIFREKT
Sbjct: 232 VHRLDRDCSGLLVLARTQTAATVLHSIFREKT 263


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
           synthase family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 477

 Score =  100 bits (250), Expect(2) = 2e-29
 Identities = 52/96 (54%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
 Frame = -2

Query: 390 KIEAKDLMDIGDKIFLPKSVDGKSP-SKTVENQSFS-NEEEMKFIHSLELYKDAAMIVIN 217
           ++ AK+ +++GD+I+LP SVD  +P +   + +SF  +EEE KF+ SL LYKD A+IV+N
Sbjct: 137 RVAAKESLNVGDRIYLPLSVDNDTPPTPPAKKESFQCSEEERKFVCSLVLYKDPAIIVLN 196

Query: 216 KPPGMPVQGGLGIKSSLDELAAKYLRYDYSESPRLL 109
           KP G+ VQGG GIK+S+DELAA  L +D SESPRL+
Sbjct: 197 KPHGLAVQGGSGIKTSIDELAATCLTFDKSESPRLV 232



 Score = 53.9 bits (128), Expect(2) = 2e-29
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = -1

Query: 100 VHRLDRDSSGILVMGRTQLSTTILHSIFREKT 5
           VHRLDRD SG+LV+ RTQ + T+LHSIFREKT
Sbjct: 232 VHRLDRDCSGLLVLARTQTAATVLHSIFREKT 263