BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00026980
         (989 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...   102   3e-19
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    99   2e-18
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...    98   4e-18
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    92   2e-16
ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thalia...    92   3e-16
ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Caps...    91   7e-16
ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis ...    91   9e-16
ref|XP_006405618.1| hypothetical protein EUTSA_v10028075mg [Eutr...    89   3e-15
ref|XP_006296178.1| hypothetical protein CARUB_v10025338mg [Caps...    89   3e-15
gb|EMJ12186.1| hypothetical protein PRUPE_ppa021345mg [Prunus pe...    89   3e-15
emb|CAB75484.1| putative protein [Arabidopsis thaliana]                89   3e-15
ref|XP_006482369.1| PREDICTED: putative ribonuclease H protein A...    88   4e-15
ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thalia...    88   4e-15
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    88   4e-15
gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. ...    87   8e-15
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...    87   1e-14
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...    87   1e-14
gb|EMJ10237.1| hypothetical protein PRUPE_ppa014970mg [Prunus pe...    86   3e-14
dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like ...    85   4e-14
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    85   5e-14

>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1225

 Score =  102 bits (253), Expect = 3e-19
 Identities = 55/186 (29%), Positives = 99/186 (53%), Gaps = 1/186 (0%)
 Frame = +1

Query: 7    WALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFIWK 186
            W+  K+G ++  S Y +   D  R    C+  +   +   ++ + WK++   K KHF W+
Sbjct: 885  WSFTKSGNYTVKSGY-WAARDLSRPT--CDLPFQGPSVSALQAQVWKIKTTRKFKHFEWQ 941

Query: 187  CFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGLLDD 366
            C SG L TN  L  R +  + +C  CG  EE++ H+LF CP ++++W LSP+     +  
Sbjct: 942  CLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFP 1001

Query: 367  TDSFVVWWGKICRLNFKPSLV-DRIQLTTYILWWLWKTRNLWVFEKVRKSEMDTLKAAVE 543
             +S    +  +     +  +  D +++  +ILW++WK+RN ++FE V +S    L  A++
Sbjct: 1002 RNSLFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIFENVIESPQVILDFAIQ 1061

Query: 544  EWNEFK 561
            E N +K
Sbjct: 1062 EANVWK 1067


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 99.4 bits (246), Expect = 2e-18
 Identities = 63/194 (32%), Positives = 94/194 (48%), Gaps = 1/194 (0%)
 Frame = +1

Query: 7    WALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFIWK 186
            W   K G ++  S Y+   LD              L + I     WK+Q   K++HF+W+
Sbjct: 789  WHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYI-----WKVQCPPKLRHFLWQ 843

Query: 187  CFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPV-TWDGLLD 363
              SG +P +  L+KRG++ D  C  CG  EE++ H LF C  A+++W LS + T  G+  
Sbjct: 844  ILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFP 903

Query: 364  DTDSFVVWWGKICRLNFKPSLVDRIQLTTYILWWLWKTRNLWVFEKVRKSEMDTLKAAVE 543
                F        R+   PS VD      +I+W++WK RN  VFE V K  M+ L  AV+
Sbjct: 904  SNSIFTNLDHLFWRI---PSGVDSAPY-PWIIWYIWKARNEKVFENVDKDPMEILLLAVK 959

Query: 544  EWNEFKAMKAPLSS 585
            E   ++  +  L S
Sbjct: 960  EAQSWQEAQVELHS 973


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score = 98.2 bits (243), Expect = 4e-18
 Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 6/192 (3%)
 Frame = +1

Query: 4    VWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFIW 183
            +W + KNG+F+  S+Y + +L+  RK     S   NL    + +K WK ++  KVK F W
Sbjct: 1013 MWMMSKNGQFTVRSAYYHELLED-RKTGPSTSRGPNLK---LWQKIWKAKIPPKVKLFSW 1068

Query: 184  KCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGLLD 363
            K     L     ++KRGM +D  C  CGE EET EH+++ C  + + W +SP+       
Sbjct: 1069 KAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNI 1128

Query: 364  DTDSFVVWWGKICRLNFKPSLVDRIQLTTY------ILWWLWKTRNLWVFEKVRKSEMDT 525
            +  SF +W           SL+D  + T +      I W +W  RN WVFEK + +  + 
Sbjct: 1129 EAGSFRIW---------VESLLDTHKDTEWWALFWMICWNIWLGRNKWVFEKKKLAFQEV 1179

Query: 526  LKAAVEEWNEFK 561
            ++ AV    EF+
Sbjct: 1180 VERAVRGVMEFE 1191


>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 92.4 bits (228), Expect = 2e-16
 Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 6/190 (3%)
 Frame = +1

Query: 7    WALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKI-IREKSWKLQVKGKVKHFIW 183
            WA  +N +++  S Y   V   V   EE     N L   + ++++ W+L++  K+KHFIW
Sbjct: 1347 WAYTRNTQYTVRSGY--WVATHVNLTEE--EIINPLEGDVPLKQEIWRLKITPKIKHFIW 1402

Query: 184  KCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGLLD 363
            +C SG L T   L+ R +  D  C  C   +ET+ HI+FTC  AQ VW+ +  +    L 
Sbjct: 1403 RCLSGALSTTTQLRNRNIPADPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLC 1462

Query: 364  DTDSF-----VVWWGKICRLNFKPSLVDRIQLTTYILWWLWKTRNLWVFEKVRKSEMDTL 528
             TD+      ++  GK    N    +++ + +  +I+W LWK+RN ++F+++ +      
Sbjct: 1463 FTDNLEENIRLILQGK---KNQNLPILNGL-MPFWIMWRLWKSRNEYLFQQLDRFPWKVA 1518

Query: 529  KAAVEEWNEF 558
            + A +E  E+
Sbjct: 1519 QKAEQEATEW 1528


>ref|NP_194638.1| ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 92.0 bits (227), Expect = 3e-16
 Identities = 60/187 (32%), Positives = 88/187 (47%), Gaps = 6/187 (3%)
 Frame = +1

Query: 7   WALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFIWK 186
           W    +G ++  S Y  L     ++    E S  +LN   I +K WK Q   K++HF+WK
Sbjct: 215 WDYTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNP--IYQKIWKSQTSPKIQHFLWK 272

Query: 187 CFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLS--PVTWDGLL 360
           C S  LP    L  R +  +  C  C  C+ET+ H+LF C  A+  W +S  P+   G  
Sbjct: 273 CLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEW 332

Query: 361 DDTDSFVVWWGKICRL-NFKPSLVDRIQLTTYILWWLWKTRNLWVFEKVRKSEMDTLKAA 537
            D+    ++W  +  L N  P      QL  ++LW LWK RN  VF     +  + L+ A
Sbjct: 333 ADSIYVNLYW--VFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRA 390

Query: 538 ---VEEW 549
              +EEW
Sbjct: 391 EDDLEEW 397


>ref|XP_006279399.1| hypothetical protein CARUB_v10007977mg [Capsella rubella]
           gi|482548097|gb|EOA12297.1| hypothetical protein
           CARUB_v10007977mg [Capsella rubella]
          Length = 417

 Score = 90.9 bits (224), Expect = 7e-16
 Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 2/167 (1%)
 Frame = +1

Query: 1   MVWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFI 180
           +VWA  ++G +S  S  N+L+  +   ++  E S   +N+  ++EK W      K+K F 
Sbjct: 48  LVWAYTRDGNYSVKSG-NWLLTQEHEVVDSVEESTKRINA--VKEKVWAFHTAPKIKMFF 104

Query: 181 WKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLS--PVTWDG 354
           W+  SG +  + CL++ G+  + +C  C   EET+ H+LF C  AQ+VW +S  P+  +G
Sbjct: 105 WRVLSGAIAVSECLRRHGINTNPLCQVCKVEEETISHVLFGCQLAQQVWSVSGLPIPANG 164

Query: 355 LLDDTDSFVVWWGKICRLNFKPSLVDRIQLTTYILWWLWKTRNLWVF 495
               T   V +   I   + + SL  R Q   ++LW +WK RN  VF
Sbjct: 165 FSSSTVENVEYCFMIMGKS-EVSLQSR-QAIPWLLWEIWKARNGLVF 209


>ref|NP_178368.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|3184275|gb|AAC18922.1| putative reverse transcriptase
           [Arabidopsis thaliana] gi|330250513|gb|AEC05607.1| RNase
           H domain-containing protein [Arabidopsis thaliana]
          Length = 365

 Score = 90.5 bits (223), Expect = 9e-16
 Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
 Frame = +1

Query: 127 IREKSWKLQVKGKVKHFIWKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTC 306
           +++  WKL V  K+KHF+W+C +G L TN  L+ R +  D +C  C   EET+ HI+F C
Sbjct: 33  VKQAIWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNC 92

Query: 307 PRAQKVWKLSPVTWDGLLDDTDSFVVWWGKICRLNFKPSL--VDRIQLTTYILWWLWKTR 480
           P  Q VW+ + +          SF     ++ +L+   +   +DR  L  +I+W LWK+R
Sbjct: 93  PYTQSVWRSANIIIGNQWGPPSSFEDNLNRLIQLSKTQTTNSLDRF-LPFWIMWRLWKSR 151

Query: 481 NLWVFEKVRKSEMDTLKAAVEEWNEF 558
           N+++F++  +S     +  +++  E+
Sbjct: 152 NVFLFQQKCQSPDYEARKGIQDATEW 177


>ref|XP_006405618.1| hypothetical protein EUTSA_v10028075mg [Eutrema salsugineum]
           gi|557106756|gb|ESQ47071.1| hypothetical protein
           EUTSA_v10028075mg [Eutrema salsugineum]
          Length = 343

 Score = 89.0 bits (219), Expect = 3e-15
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 4/204 (1%)
 Frame = +1

Query: 1   MVWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFI 180
           +VW   KNGK+S  S Y   V + + + +    +W        ++  WKLQ   KVK F+
Sbjct: 27  LVWLPQKNGKYSVRSGYGLSVSETIPERQR-NFNW--------QKNIWKLQTVPKVKQFL 77

Query: 181 WKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGLL 360
           W+      P    L +RG+ +D  C  CG   ET+ H+L  C  A+KVW L+P+     L
Sbjct: 78  WRAVVEAFPVGVELVRRGIQVDFACKICGN-PETITHVLRDCQLARKVWNLAPLRTQSHL 136

Query: 361 DDTDSFVVWWGKICRLNFKPSLVDRIQLTTYILWWLWKTRNLWVFEKVRKSEMDTLKAAV 540
           +           +  ++  P  V    L  +I W LW  RN  +F     S  + +  A+
Sbjct: 137 NTVLCLDFLAHILSMVSLPPIEVSTTSLPAWICWNLWTPRNHRIFSDTTYSAYEIITKAI 196

Query: 541 ---EEWNEFK-AMKAPLSSN*VTS 600
                W E + +++ P S   VTS
Sbjct: 197 CDARAWQEAQSSLRKPQSPQVVTS 220


>ref|XP_006296178.1| hypothetical protein CARUB_v10025338mg [Capsella rubella]
           gi|482564886|gb|EOA29076.1| hypothetical protein
           CARUB_v10025338mg [Capsella rubella]
          Length = 417

 Score = 89.0 bits (219), Expect = 3e-15
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
 Frame = +1

Query: 1   MVWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFI 180
           +VWA  ++G +S  S  N+L+  +   +E  E S   +N+  ++EK W L    K+K F 
Sbjct: 48  LVWAYTRDGNYSVKSG-NWLLTHEHEVVEFVEESTKRINA--VKEKVWGLHTAPKIKLFF 104

Query: 181 WKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLS--PVTWDG 354
           W+  SG +  + CL + G+  + +C  C   EET+ H+LF C  AQ+VW +S  PV  +G
Sbjct: 105 WRVLSGAVAVSECLHRHGINSNPLCQACKVEEETISHVLFGCQLAQQVWSVSGLPVPDNG 164

Query: 355 LLDDTDSFVVWWGKICRLNFKPSLVDRIQLTTYILWWLWKTRNLWVF 495
               T   + +   +   +  P  +   Q   ++LW +WK RN  VF
Sbjct: 165 FFPTTVENMEFCFMVMSQSEVP--LQSRQAIPWLLWEIWKARNDLVF 209


>gb|EMJ12186.1| hypothetical protein PRUPE_ppa021345mg [Prunus persica]
          Length = 759

 Score = 89.0 bits (219), Expect = 3e-15
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 1/187 (0%)
 Frame = +1

Query: 1   MVWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFI 180
           ++W +++NG +S  S Y++L   + R+     SS   ++ ++ ++  WK  V  K+++F+
Sbjct: 398 LIWPMERNGSYSVRSGYHWLHNTECRRRNPRPSSSMTIDPRLWKQ-IWKADVPPKIRNFL 456

Query: 181 WKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGLL 360
           W+     L T+  L K+ +    MC  C +  ET EHIL  CP  + VW    +      
Sbjct: 457 WRALRNCLATSANLHKKKIARSPMCPLCNDHPETAEHILLLCPWVEPVWFRCSLNLRINR 516

Query: 361 DDTDSFVVWWGKICRLNFKPSLVDR-IQLTTYILWWLWKTRNLWVFEKVRKSEMDTLKAA 537
               SF  W G +      P    R + +  Y  W +WK +   V E +  S   T  AA
Sbjct: 517 QAVTSFGQWLGNVIEKGKTPQERSRCLTVIAYFCWQIWKDKCKAVLEHISPSPARTTHAA 576

Query: 538 VEEWNEF 558
               NEF
Sbjct: 577 SIAINEF 583


>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 89.0 bits (219), Expect = 3e-15
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 3/189 (1%)
 Frame = +1

Query: 1    MVWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFI 180
            ++W+ +  G ++  S Y     D    +        +++   ++ K W L +  K+KHF+
Sbjct: 624  LIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHGSVD---LKTKIWNLPIMPKLKHFL 680

Query: 181  WKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLS--PVTWDG 354
            W+  S  LPT   L  RGM +D  C  C    E++ H LFTCP A   W+LS  P+    
Sbjct: 681  WRILSKALPTTDRLTTRGMRIDPGCPRCRRENESINHALFTCPFATMAWRLSDTPLYRSS 740

Query: 355  LLDDTDSFVVWWGKICRLNFKPSLVDRIQLTTY-ILWWLWKTRNLWVFEKVRKSEMDTLK 531
            +L +     +    I  L    ++ D  +L  + +LW +WK RN  VF  +R+S   T+ 
Sbjct: 741  ILSNNIEDNI--SNILLLLQNTTITDSQKLIPFWLLWRIWKARNNVVFNNLRESPSITVV 798

Query: 532  AAVEEWNEF 558
             A  E NE+
Sbjct: 799  RAKAETNEW 807


>ref|XP_006482369.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 494

 Score = 88.2 bits (217), Expect = 4e-15
 Identities = 59/170 (34%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   MVWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFI 180
           ++W  DK GK++  S Y   +  K      C +S ++ N  +I    WKL +  K+K FI
Sbjct: 169 VIWHYDKRGKYTMKSGYQVALKLKFPYSPNCSNSSSSSNWSVI----WKLTLPAKIKIFI 224

Query: 181 WKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWD-GL 357
           W+    +LPT   L KR +V +  C  CG   E   H L TC  A+KVW+LSP+      
Sbjct: 225 WRAAKNLLPTAENLWKRKIVHEAYCKRCGNRVENTLHALITCKAAKKVWQLSPMASSFQE 284

Query: 358 LDDTDSFVVWWGKICRLNFKPSLVDRIQLTTYILWWLWKTRNLWVFEKVR 507
           + + D      GK      K S  D   L T ILW +W  RN  VFE ++
Sbjct: 285 MGNPDILGDLGGK------KLSRADMEMLMT-ILWVIWYDRNKLVFEDLK 327


>ref|NP_189164.1| ribonuclease H-like protein [Arabidopsis thaliana]
           gi|9294184|dbj|BAB02086.1| reverse transcriptase-like
           protein [Arabidopsis thaliana]
           gi|332643482|gb|AEE77003.1| ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 343

 Score = 88.2 bits (217), Expect = 4e-15
 Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
 Frame = +1

Query: 127 IREKSWKLQVKGKVKHFIWKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTC 306
           I+ K WKL+   K+KHF+WK  SG L T   LK+R +     C  C + +ET +H+ F C
Sbjct: 14  IKAKIWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDC 73

Query: 307 PRAQKVWKLSPVTWD-----GLLDDTDSFVVWWGKICRLNFKPSLVDRIQLTTYILWWLW 471
             AQ+VW+ S +        G+  +T   ++     C  N +P L     L  +ILW LW
Sbjct: 74  FYAQQVWRASGIPHQELRTTGITMETKMELLL--SSCLANRQPQL---FNLAIWILWRLW 128

Query: 472 KTRNLWVFEKVRKSEMDTLKAA---VEEWNE 555
           K+RN  VF++   S  +TL+ A   V+EW +
Sbjct: 129 KSRNQLVFQQKSISWQNTLQRARNDVQEWED 159


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 88.2 bits (217), Expect = 4e-15
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 1/181 (0%)
 Frame = +1

Query: 1    MVWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFI 180
            +VW   K+G+++  + Y    L+      + + +W        ++  WK+    KVKHF+
Sbjct: 937  LVWLPVKSGEYTTKTGYALAKLNSF-PASQLDFNW--------QKNIWKIHTSPKVKHFL 987

Query: 181  WKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGLL 360
            WK   G LP    L +R +  ++ C  CG+ E +L H++  CP A+KVW+L+PV ++   
Sbjct: 988  WKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYAKKVWELAPVLFNPSE 1046

Query: 361  DDTDSFVVWWGKICRL-NFKPSLVDRIQLTTYILWWLWKTRNLWVFEKVRKSEMDTLKAA 537
                S  +      R+    P+ +    L  ++LW LWK RN  +F+    SE   +  A
Sbjct: 1047 ATHSSVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSEEGLVLKA 1106

Query: 538  V 540
            +
Sbjct: 1107 I 1107


>gb|ACP30591.1| disease resistance protein [Brassica rapa subsp. pekinensis]
          Length = 1555

 Score = 87.4 bits (215), Expect = 8e-15
 Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 8/186 (4%)
 Frame = +1

Query: 19   KNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFIWKCFSG 198
            K G +S  S Y Y+ +       E E  +   N        WKL    KVK F+WK   G
Sbjct: 1218 KTGDYSVKSGY-YVAIGAEGDGPEAEGDFKWTNHV------WKLDCAPKVKLFVWKVLKG 1270

Query: 199  ILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVT----WDGLLDD 366
             +P    L +R + +D  C  CG   E++ H+LF C  AQ+VW L+P+     + G++D 
Sbjct: 1271 AVPVGERLLERHIDIDPRCKRCGS-NESITHLLFHCQFAQRVWHLAPLATAPDFRGMID- 1328

Query: 367  TDSFVVWWGKICRLN-FKPSLVDRIQLTTYILWWLWKTRNLWVFEKVRKSEMDTLKAAV- 540
                +  W  +  L    P+ +    L  +I W +WK RN +VFE V  S  DTL +A+ 
Sbjct: 1329 ---LMADWPALSNLKALPPTGIASGNLVPWIFWNIWKARNRFVFEGVSASPEDTLSSAIR 1385

Query: 541  --EEWN 552
               EW+
Sbjct: 1386 LAREWS 1391


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score = 87.0 bits (214), Expect = 1e-14
 Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 4/198 (2%)
 Frame = +1

Query: 4    VWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFIW 183
            VW   K+G++S  S Y   +  +  K E    +    ++  ++EK W      K+K F+W
Sbjct: 1005 VWLHSKSGEYSVKSGY--WLAFQTNKPELIREARVQPSTNGLKEKIWSTLTSPKIKLFLW 1062

Query: 184  KCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGLLD 363
            +  S  LP    + +RGM +D  C  CGE  E++ H+LFTC  A++VW LS V       
Sbjct: 1063 RILSSALPVAYQIIRRGMPIDPRCQVCGEEGESINHVLFTCSLARQVWALSGVPTSQFGF 1122

Query: 364  DTDSFVVWWGKICRLNFKPSLVDRIQLT-TYILWWLWKTRNLWVFEKVRKS---EMDTLK 531
               S       +  L  K  + ++I+ +  ++LW LWK R+   FE    S    ++ ++
Sbjct: 1123 QNSSIFANIQYLLELKGKGLIPEQIKKSWPWVLWRLWKNRDKLFFEGTIFSPLKSIEKIR 1182

Query: 532  AAVEEWNEFKAMKAPLSS 585
              V+EW   +A+ A + +
Sbjct: 1183 DDVQEWFLAQALVASVDA 1200


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score = 87.0 bits (214), Expect = 1e-14
 Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 8/190 (4%)
 Frame = +1

Query: 4    VWALDKNGKFSEHSSY---NYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKH 174
            +W  +K+G +S    Y   +   L +V      + S N+L +++     WKLQ + K+K 
Sbjct: 851  IWKHNKSGDYSVKLGYWLASNQNLGQVAIEAMMQPSLNDLKTQV-----WKLQTEPKIKV 905

Query: 175  FIWKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDG 354
            F+WK  SG +P    L  RGM LD  C  CG   E+++H+LF+C   ++VW +S +    
Sbjct: 906  FLWKVLSGAIPVVDLLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPL 965

Query: 355  LLDDTDSFV--VWWGKICRLNFKPSLVDRIQLTTYILWWLWKTRNLWVFEKVRKSEMDTL 528
            L  +  S    ++   I R N K   V+  +   +I+W +WK RNL+ FE  R + ++T+
Sbjct: 966  LGFECGSVYANLYHFLINRDNLKWP-VELRRSFPWIIWRIWKNRNLFFFEGKRFTVLETI 1024

Query: 529  ---KAAVEEW 549
               +  VE+W
Sbjct: 1025 LKVRKDVEDW 1034


>gb|EMJ10237.1| hypothetical protein PRUPE_ppa014970mg [Prunus persica]
          Length = 352

 Score = 85.5 bits (210), Expect = 3e-14
 Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 1/183 (0%)
 Frame = +1

Query: 13  LDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFIWKCF 192
           +++NG +S HS Y++L   + R+     SS   ++ ++ ++  WK  V  K+++F+W+  
Sbjct: 1   MERNGSYSVHSGYHWLHNTECRRRNPRPSSSMAIDPRLWKQ-IWKADVPPKIRNFLWRAL 59

Query: 193 SGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGLLDDTD 372
              L T+  L K+ +    +C  C +  ET EHIL  CP  + VW    +          
Sbjct: 60  RNCLATSANLHKKKIARSPVCPLCNDHPETAEHILLLCPWVEPVWFGCSLNLRINRQAVT 119

Query: 373 SFVVWWGKICRLNFKPSLVDR-IQLTTYILWWLWKTRNLWVFEKVRKSEMDTLKAAVEEW 549
           SF  W G +      P    R + +  Y  W +WK R   V E +  S   T  AA    
Sbjct: 120 SFGQWLGNVIEKGKTPQERSRCLTVIAYFCWQIWKDRRKAVLEHISPSPARTTHAASIAI 179

Query: 550 NEF 558
           NEF
Sbjct: 180 NEF 182


>dbj|BAB08714.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1197

 Score = 85.1 bits (209), Expect = 4e-14
 Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
 Frame = +1

Query: 4    VWALDKNGKFSEHSSYNYLVLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHFIW 183
            +W   K+G ++  + Y   + D      + +SS + + S    ++ W +Q   K++ F+W
Sbjct: 833  IWLGAKDGLYTTKTGYKATLCDV-----DSDSSRDPVLSFNWFDEVWNVQCSPKIRLFLW 887

Query: 184  KCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGLLD 363
            K  SG LP    L  R    D +C  CGE  ET  H LF C   Q+VW+L+P      L+
Sbjct: 888  KAVSGALPVGSQLAIRIPSFDPVCCRCGEL-ETSSHALFNCMFVQRVWRLAP------LE 940

Query: 364  DTDSFVVW--------WGKICRLNFKPSL-VDRIQLTTYILWWLWKTRNLWVFEKVRKSE 516
              D F+V+        W K  +    PS+ +    L  +I W LW TRN  VF  +  SE
Sbjct: 941  GIDLFLVFTDVKLGLSWLK--KKKTLPSVGLGYCALYPWICWTLWITRNQKVFSNILFSE 998

Query: 517  MDTLKAAVEEWNEFKAMKAPLS 582
            ++T+  A+++  E++  + P S
Sbjct: 999  LETINKAIQDAKEWQFAQEPNS 1020


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 84.7 bits (208), Expect = 5e-14
 Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 20/224 (8%)
 Frame = +1

Query: 7    WALDKNGKFSEHSSYNYL---VLDKVRKMEECESSWNNLNSKIIREKSWKLQVKGKVKHF 177
            W    NG +S  + Y +L   V  ++ +  + + S N+L  KI     W L    K++ F
Sbjct: 1003 WLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKI-----WNLHTAPKIRIF 1057

Query: 178  IWKCFSGILPTNCCLKKRGMVLDLMCSGCGECEETLEHILFTCPRAQKVWKLSPVTWDGL 357
            +WK   G +P    L+ RG+  D  C  C    ET+ HILF CP A++VW ++ ++  G 
Sbjct: 1058 LWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAG- 1116

Query: 358  LDDTDSFVVWWGKICRLNFKPSLVDRIQ-LTTYILWWLWKTRNLWVFE---KVRKSEMDT 525
             + ++S      ++  L  +  L   ++ ++ +ILW+LWK RN  +FE    +  + +D 
Sbjct: 1117 SEFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDK 1176

Query: 526  LKAAVEEW--------NEFKAMK-----APLSSN*VTSFFFCWS 618
               A  EW        N+ K +K      PL      +  F WS
Sbjct: 1177 AYEAYHEWFSAQTHMQNDEKHLKITKWCPPLPGELKCNIGFAWS 1220