BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00026591
         (1402 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]   210   1e-51
gb|ACN32036.1| unknown [Zea mays]                                     209   3e-51
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   209   3e-51
gb|ACL54615.1| unknown [Zea mays]                                     207   9e-51
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]   203   2e-49
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]   194   1e-46
emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]   194   1e-46
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]   188   4e-45
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   173   1e-43
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...   173   1e-43
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]     182   2e-43
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ...   181   5e-43
ref|NP_001056109.1| Os05g0527300 [Oryza sativa Japonica Group] g...   179   2e-42
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   179   3e-42
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   178   4e-42
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc...   178   6e-42
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   177   9e-42
emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]   177   1e-41
gb|AAU90262.1| integrase core domain containing protein [Oryza s...   176   3e-41
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   175   5e-41

>emb|CAN82769.1| hypothetical protein VITISV_037882 [Vitis vinifera]
          Length = 2220

 Score =  210 bits (535), Expect = 1e-51
 Identities = 131/395 (33%), Positives = 201/395 (50%), Gaps = 17/395 (4%)
 Frame = -1

Query: 1387 STQTQNDGGSMDQ----------PIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGY 1238
            STQ+ +  GS+              Q  +  +  +L  +NY++WK Q+   V     + +
Sbjct: 847  STQSSSSSGSIGSGQSTTMASHPSYQMLNHTLLVKLDRTNYILWKSQIDNVVFANGFEDF 906

Query: 1237 LTGEVKVPKEFLSETTTENTKKVNPAYISWIRQDQXXXXXXXXXXSENILVSVVGSNTSM 1058
            + G    P + LS         +NPA+++W RQD+          +  I+  ++G N+S 
Sbjct: 907  IDGFSICPDKELSSGL------INPAFVAWRRQDRTILSWLYSSLTPAIMAQIIGHNSSH 960

Query: 1057 EVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPE 878
              W  LE  F+S + A++MQ RL+LQ+ +KG+  M D++ KVK   D LAA G  + E +
Sbjct: 961  SAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSLAAIGEPVSEQD 1020

Query: 877  QIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSV 698
            Q+M +L GLGS+YN+V+  +  R    ++   HSMLL+FE+RLE  +SS+  F  +  S 
Sbjct: 1021 QVMNLLGGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFEHRLEQ-QSSIKQF--SPISA 1077

Query: 697  NIATHQQNRRGGFTLQGGR--RRTPN--QYFN---GRGGRTNHRGSYXXXXXXXXXXXXX 539
            N A+   NR GG    GGR    TPN   Y     GRGGR    G +             
Sbjct: 1078 NYASSSNNRGGGRRYNGGRGQNHTPNISNYTYRGCGRGGRYGQNGRH-----NSNSSEKP 1132

Query: 538  RCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLC 359
            +CQ+C    HT   C++R D+++  S ++        +N  NP    A V ++ N  D  
Sbjct: 1133 QCQLCGKFGHTVQICYHRFDISYQSSQSS----NTSPSNAGNPNSIPAMVASSNNLADDT 1188

Query: 358  WYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNG 254
            WY DSGA++H+T  + NL  ++ Y G +KV IGNG
Sbjct: 1189 WYLDSGASHHLTQSVGNLTSSSPYTGIDKVTIGNG 1223


>gb|ACN32036.1| unknown [Zea mays]
          Length = 376

 Score =  209 bits (531), Expect = 3e-51
 Identities = 136/400 (34%), Positives = 202/400 (50%), Gaps = 10/400 (2%)
 Frame = -1

Query: 1390 MSTQTQNDGGSM---DQPIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVK 1220
            MST +  DG +      P    SQ+++ +L   NYL+W  QV   ++   L G++ G + 
Sbjct: 1    MSTMSTVDGVAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLP 60

Query: 1219 VPKEFLSETTTEN----TKKVNPAYISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEV 1052
             P++ ++    E     T  +NP + SW  QDQ          SE +L +VV + T+   
Sbjct: 61   APRQTVAVDPAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGA 120

Query: 1051 WKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQI 872
            W  LE  +AS + A++MQ R+QL T++KG+    ++  KVK   D LAA G ++E+ E I
Sbjct: 121  WSTLERMYASSSRARIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFI 180

Query: 871  MYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNI 692
             Y+L GL ++Y+S++ ++T+R   +T+SD ++ LLSFE R E   +++G       SVN 
Sbjct: 181  SYLLRGLPADYDSLVTSITTRPDTYTISDVYAHLLSFETRQE-YHTAVGQIS----SVNN 235

Query: 691  ATHQQNRRGGFTLQGGRRRTPNQYFNGRGGRTN-HRGSY--XXXXXXXXXXXXXRCQICH 521
            A    +R GG   Q GR         GRGGR+   RG+                 CQIC 
Sbjct: 236  ANRVPSRGGGAFGQNGRGG------RGRGGRSQPGRGNNRPPARPPSNNSSSSGTCQICG 289

Query: 520  YSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSG 341
              NH A +C++R D            YQ +S      TV  A    +E A D  WY DSG
Sbjct: 290  KGNHNALQCWHRFD----------QAYQAES------TVKQAAAATHEYAVDPNWYMDSG 333

Query: 340  ATNHVTYDLSNLNLAADYQGNEKVQIGNGTGSNHRNGAPQ 221
            AT+H+T DL  L     Y G +K+Q+ NG GS+H   + Q
Sbjct: 334  ATDHITSDLERLTTRERYTGGDKIQVANGAGSSHEASSSQ 373


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  209 bits (531), Expect = 3e-51
 Identities = 123/370 (33%), Positives = 191/370 (51%), Gaps = 7/370 (1%)
 Frame = -1

Query: 1342 QPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKVNP 1163
            Q  +  +  +L  +NY++W+ Q+   +     + ++ G    P++ LS         +NP
Sbjct: 30   QMLNHTLPVKLDRTNYILWRSQIDNVIFANGFEDFIDGTSICPEKDLSPGV------MNP 83

Query: 1162 AYISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQL 983
            A+++W RQD+          +  I+  ++G NTS   W  LE+ F+S + A++MQ RL+L
Sbjct: 84   AFVAWRRQDRTILSWIYSSLTPGIMAQIIGHNTSHSAWNALESIFSSSSRARIMQLRLEL 143

Query: 982  QTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLA 803
            Q+ +KG+  M D++ K+K   D LAA G  + E +Q+M +L GLGS+YN+V+  +  R  
Sbjct: 144  QSTKKGSMSMIDYIMKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDD 203

Query: 802  HFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNRRGGFTLQGGRRR--TP 629
              +L   HSMLL+FE+RLE   S        Q S N A+   NR GG    GGR +  +P
Sbjct: 204  KISLEAIHSMLLAFEHRLEQQSSI------EQMSANYASSSNNRGGGRKFNGGRGQGYSP 257

Query: 628  NQ-----YFNGRGGRTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVP 464
            N         GRGGR    G               +CQ+C    HTA  C++R D++F  
Sbjct: 258  NNNNYTYRGRGRGGRNGQGG-----RQNSSPSEKPQCQLCGKFGHTAQICYHRFDISF-Q 311

Query: 463  SNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQ 284
                  ++ + + N +N    +A+  N  N  D  WY DSGA++H+T +L NL   + Y 
Sbjct: 312  GGQTTISHSLNNGNQNNIPAMVASASN--NPADESWYLDSGASHHLTQNLGNLTSTSPYT 369

Query: 283  GNEKVQIGNG 254
            G +KV IGNG
Sbjct: 370  GTDKVTIGNG 379


>gb|ACL54615.1| unknown [Zea mays]
          Length = 376

 Score =  207 bits (527), Expect = 9e-51
 Identities = 135/400 (33%), Positives = 201/400 (50%), Gaps = 10/400 (2%)
 Frame = -1

Query: 1390 MSTQTQNDGGSM---DQPIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVK 1220
            MST +  DG +      P    SQ+++ +L   NYL+W  QV   ++   L G++ G + 
Sbjct: 1    MSTMSTVDGVAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLP 60

Query: 1219 VPKEFLSETTTEN----TKKVNPAYISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEV 1052
             P++ ++    E     T  +NP + SW  QDQ          SE +L +VV + T+   
Sbjct: 61   APRQTVAVDPAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGA 120

Query: 1051 WKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQI 872
            W  LE  +AS +  ++MQ R+QL T++KG+    ++  KVK   D LAA G ++E+ E I
Sbjct: 121  WSTLERMYASSSRVRIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFI 180

Query: 871  MYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNI 692
             Y+L GL ++Y+S++ ++T+R   +T+SD ++ LLSFE R E   +++G       SVN 
Sbjct: 181  SYLLRGLPADYDSLVTSITTRPDTYTISDVYAHLLSFETRQE-YHTAVGQIS----SVNN 235

Query: 691  ATHQQNRRGGFTLQGGRRRTPNQYFNGRGGRTN-HRGSY--XXXXXXXXXXXXXRCQICH 521
            A    +R GG   Q GR         GRGGR+   RG+                 CQIC 
Sbjct: 236  ANRVPSRGGGAFGQNGRGG------RGRGGRSQPGRGNNRPPARPPSNNSSSSGTCQICG 289

Query: 520  YSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSG 341
              NH A +C++R D            YQ +S      TV  A    +E A D  WY DSG
Sbjct: 290  KGNHNALQCWHRFD----------QAYQAES------TVKQAAAATHEYAVDPNWYMDSG 333

Query: 340  ATNHVTYDLSNLNLAADYQGNEKVQIGNGTGSNHRNGAPQ 221
            AT+H+T DL  L     Y G +K+Q+ NG GS+H   + Q
Sbjct: 334  ATDHITSDLERLTTRERYTGGDKIQVANGAGSSHEASSSQ 373


>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score =  203 bits (516), Expect = 2e-49
 Identities = 120/359 (33%), Positives = 181/359 (50%), Gaps = 5/359 (1%)
 Frame = -1

Query: 1315 RLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKVNPAYISWIRQD 1136
            +L  +NY++W+ Q+   +     + ++ G    P++ L         ++NPA+++W RQD
Sbjct: 36   KLDRTNYILWRSQIDNVIFANGFEDFIDGTSXCPEKEL------RPXEINPAFVAWRRQD 89

Query: 1135 QXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQC 956
            +          +  I+  ++G N+S   W  LE  F+S + A++MQ RL+ Q+ +KG+  
Sbjct: 90   RTILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLRLEFQSTKKGSMS 149

Query: 955  MRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHS 776
            M D++ KVK   D LAA G  + E +QIM +L GLGS+YN+V+  +  R    +L   HS
Sbjct: 150  MIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHS 209

Query: 775  MLLSFENRLENTESSLGNFDGTQFSVNIATHQQNRRGGFTLQGGR-----RRTPNQYFNG 611
            MLL+FE RLE  + S+        S N A+   NR GG    GGR         N    G
Sbjct: 210  MLLAFEQRLEQ-QGSIEQLPA--MSANYASSSNNRGGGRKYNGGRGPNFMMTNSNFRGRG 266

Query: 610  RGGRTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQ 431
            RGGR    G               +CQ+C    HT   C++R D+ F  + NN       
Sbjct: 267  RGGRYGQSG-----RQNSSSSERPQCQLCGKFGHTVQVCYHRFDITFQSTQNNTTGVSNS 321

Query: 430  SNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNG 254
             N+   P    A V ++ N  D  WY DSGA++H+T +++NL  A  Y G +KV IGNG
Sbjct: 322  GNSNSMP----AMVASSNNLADDNWYLDSGASHHLTQNVANLTNATPYTGADKVTIGNG 376


>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
          Length = 1402

 Score =  194 bits (492), Expect = 1e-46
 Identities = 120/365 (32%), Positives = 180/365 (49%), Gaps = 11/365 (3%)
 Frame = -1

Query: 1315 RLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKVNPAYISWIRQD 1136
            +L  +NY++W+ Q+   +     + ++ G    P++ L         ++NPA+++  RQD
Sbjct: 36   KLDRTNYILWRSQIDNVIFANGFEDFIDGTSVCPEKEL------RPGEINPAFVAXRRQD 89

Query: 1135 QXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQC 956
            +          +  I+  ++G N+S   W  LE  F+S + A++MQ  L+ Q+ +KG+  
Sbjct: 90   RTILSWIYSSLTPGIMAQIIGHNSSHSAWNALEKIFSSCSRARIMQLXLEFQSTKKGSMS 149

Query: 955  MRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHS 776
            M D++ KVK   D LAA G  + E +QIM +L GLGS+YN+V+  +  R    +L   HS
Sbjct: 150  MIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIREDKISLEAVHS 209

Query: 775  MLLSFENRLENTESSLGNFDGTQFSVNIATHQQNRRGGFTLQGGRR---RTPNQYFNGRG 605
            MLL+FE RLE  + S+        S N A+   NR GG    GGR       N  F GRG
Sbjct: 210  MLLAFEQRLEQ-QGSIEQLPA--MSANYASXSNNRGGGRKYNGGRGPNFMMTNSNFRGRG 266

Query: 604  --------GRTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNNA 449
                    GR N   S              +CQ+C    HT   C++R D+ F  + NN 
Sbjct: 267  RGXRYGQSGRQNSSSS-----------ERPQCQLCGKFGHTVQVCYHRFDITFQSTQNNT 315

Query: 448  GNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKV 269
                   N+   P    A V  + N  D  WY DSGA++H+T +++NL  A  Y G +KV
Sbjct: 316  TGVSNSGNSNXMP----AMVAXSNNXADDNWYLDSGASHHLTQNVANLTNATPYTGADKV 371

Query: 268  QIGNG 254
             IGNG
Sbjct: 372  TIGNG 376


>emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]
          Length = 1282

 Score =  194 bits (492), Expect = 1e-46
 Identities = 117/369 (31%), Positives = 186/369 (50%), Gaps = 7/369 (1%)
 Frame = -1

Query: 1342 QPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKVNP 1163
            Q  +  +  +L  +NY++WK Q+   V     + ++ G    P + L          +NP
Sbjct: 27   QMLNHTLPVKLDRTNYILWKSQIDNVVFANGFEDFIDGSSICPDKELXSGL------INP 80

Query: 1162 AYISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQL 983
            A+++W RQD+          +   +  ++G N+    W  LE  F+S + A++MQ RL+L
Sbjct: 81   AFVAWRRQDRTILSWLYSSLTPAXMAQIIGHNSXHSAWNALEKTFSSSSRARIMQLRLEL 140

Query: 982  QTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLA 803
            Q+ +KG+  M D++ KVK   D LAA G  + E +Q+M +L GLGS+YN+V+  +  R  
Sbjct: 141  QSTKKGSXSMIDYIMKVKGAADSLAAIGEPVSEQDQVMNLLDGLGSDYNAVVTAINIRDD 200

Query: 802  HFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNRRGGFTLQGGR--RRTP 629
              ++   HSMLL FE+RLE  +SS+  F  +  S N A+   +R GG    GGR    TP
Sbjct: 201  KISIEAVHSMLLVFEHRLEQ-QSSIEQF--SPISANYASSSNSRGGGRRYNGGRGQNHTP 257

Query: 628  N-----QYFNGRGGRTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVP 464
            N        +GRGGR      +             +CQ+C    +T   C++R D+++  
Sbjct: 258  NTSNYTYRGSGRGGRYGQNERH-----NSNSSEKPQCQLCGKFGYTVQICYHRFDISYQS 312

Query: 463  SNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQ 284
            S ++        +N  NP    A V ++    D  WY DSGA++H+T  + NL  ++ Y 
Sbjct: 313  SQSS----NTSPSNASNPNSIPAMVASSNYLADDTWYLDSGASHHLTQSVGNLTSSSPYT 368

Query: 283  GNEKVQIGN 257
            G +KV IGN
Sbjct: 369  GTDKVTIGN 377


>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
          Length = 1242

 Score =  188 bits (477), Expect(2) = 4e-45
 Identities = 124/377 (32%), Positives = 182/377 (48%), Gaps = 34/377 (9%)
 Frame = -1

Query: 1360 SMDQPIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTEN 1181
            S+   I P SQLIT RL + N+L+WK Q+  AV+GY L+G+L G  +VP + +++     
Sbjct: 234  SLRMVISPLSQLITMRLEDDNFLMWKYQIENAVRGYGLEGFLFGTEQVPPKMVTDKI--G 291

Query: 1180 TKKVNPAYISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVM 1001
                NP +  + RQD               L  VVG +++ EVW  +  NF SQ++AKVM
Sbjct: 292  VLVPNPKFRDYQRQDHLLISWLLSSIGSAFLPQVVGCSSAFEVWNTISQNFNSQSSAKVM 351

Query: 1000 QYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVT 821
             Y+ Q+Q ++K    MRD+L K+K+ CDLLA AGHKI + + I+ I+ GLG EY  V+  
Sbjct: 352  FYKSQMQMLKKDGLTMRDYLTKMKNYCDLLATAGHKISDTDHILAIMQGLGDEYEXVIAV 411

Query: 820  LTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNRRGGFTLQGGR 641
            + S+ +  +L    S L++ E R+ +  SS         S N  +   NR  G +     
Sbjct: 412  IXSKKSSPSLQYVTSTLIAHEGRIAHKISS------NDLSXNYTSQYSNR--GXSSSWNS 463

Query: 640  RRTPNQYFNGR---GGRTNHRGSY----XXXXXXXXXXXXXRCQICHYSNHTADKCFYRC 482
               P+  F  R   GG    RGS+                 +CQ C+   H   +CFYR 
Sbjct: 464  NGYPSSGFQNRNQFGGNXXTRGSFVXNRGRGRGRAQGGIKPQCQXCNKFGHXVHRCFYRY 523

Query: 481  DLNF---VPSN-------------------NNAGN-----YQVQSNNVHNPTVNIANVGN 383
            D NF   +P N                   ++AGN     Y  Q +  ++     A V  
Sbjct: 524  DPNFHGNMPXNGXTPGXLGSXARNGASGSISSAGNVNXTEYDAQEBQDYSEME--AMVAT 581

Query: 382  NENAEDLCWYPDSGATN 332
             E+ ++ CW+PDSGATN
Sbjct: 582  XEDLQNCCWFPDSGATN 598



 Score = 21.9 bits (45), Expect(2) = 4e-45
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -2

Query: 219 GNLRNGLYCFNFLK 178
           GNL  GLY FN  K
Sbjct: 600 GNLHKGLYQFNLSK 613


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  173 bits (438), Expect(2) = 1e-43
 Identities = 111/354 (31%), Positives = 177/354 (50%), Gaps = 6/354 (1%)
 Frame = -1

Query: 1285 KMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKV-NPAYISWIRQDQXXXXXXXX 1109
            K QV AA++G  L+GYLTG  K+P E   ET     KK  NPA+  W  +DQ        
Sbjct: 5    KAQVRAAMRGARLEGYLTGATKMPDE---ETVDNKGKKSPNPAFEEWEAKDQQILSYLLS 61

Query: 1108 XXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVK 929
              S  + + V  + T+ E W  +E  FASQ  A+ +  RL L T +KG+  + ++  K+K
Sbjct: 62   SISREVQIQVTSAKTAAEAWHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMK 121

Query: 928  SCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRL 749
               D +AAAG  +++ E + YIL+GL  E+  ++  L +R+   +L D +S LL+FE +L
Sbjct: 122  GYGDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRVDPISLEDLYSQLLNFETKL 181

Query: 748  ENTESSLGNFDGTQFSVNIA-----THQQNRRGGFTLQGGRRRTPNQYFNGRGGRTNHRG 584
            +      G  +  Q S N+A      +Q+   GG   +GGR  +     +  GGR +++G
Sbjct: 182  DLMR---GGGEQHQGSANMAGRGGRGNQRGGSGGRGQRGGRGSSRGGRASWSGGRQSNQG 238

Query: 583  SYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTV 404
             Y              CQ+C    HTA +C++R + +FVP    AG     +N+ H    
Sbjct: 239  GY-IRRSNNSSDERPVCQVCFKKGHTAARCWHRFEEDFVPDEKLAG---AATNSYH---- 290

Query: 403  NIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNGTGSN 242
                        D  WY D+GAT+H+T +L  L++   Y G +++   +G+ ++
Sbjct: 291  -----------VDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTASGSDNS 333



 Score = 32.3 bits (72), Expect(2) = 1e-43
 Identities = 25/80 (31%), Positives = 35/80 (43%)
 Frame = -2

Query: 252 QDQTTGMVLLKGNLRNGLYCFNFLKANDPSCPTLKSTKFSHHTSQAASPVSAFSTDVQNK 73
           +D+ T  +LLKG    GLY         P+  T+K+         A   V         K
Sbjct: 346 KDKDTKNILLKGRCHKGLYPI-------PATSTIKN---------ALGAV---------K 380

Query: 72  NSLVTWHNRLGHASFDVVKK 13
            S+  WHNRLGH S  +V++
Sbjct: 381 PSMSRWHNRLGHPSSFIVRQ 400


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 969

 Score =  173 bits (438), Expect(2) = 1e-43
 Identities = 111/354 (31%), Positives = 177/354 (50%), Gaps = 6/354 (1%)
 Frame = -1

Query: 1285 KMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKV-NPAYISWIRQDQXXXXXXXX 1109
            K QV AA++G  L+GYLTG  K+P E   ET     KK  NPA+  W  +DQ        
Sbjct: 5    KAQVRAAMRGARLEGYLTGATKMPDE---ETVDNKGKKSPNPAFEEWEAKDQQILSYLLS 61

Query: 1108 XXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVK 929
              S  + + V  + T+ E W  +E  FASQ  A+ +  RL L T +KG+  + ++  K+K
Sbjct: 62   SISREVQIQVTSAKTAAEAWHSIEAMFASQTRARAVNLRLALSTTKKGSMTVAEYYTKMK 121

Query: 928  SCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRL 749
               D +AAAG  +++ E + YIL+GL  E+  ++  L +R+   +L D +S LL+FE +L
Sbjct: 122  GYGDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRVDPISLEDLYSQLLNFETKL 181

Query: 748  ENTESSLGNFDGTQFSVNIA-----THQQNRRGGFTLQGGRRRTPNQYFNGRGGRTNHRG 584
            +      G  +  Q S N+A      +Q+   GG   +GGR  +     +  GGR +++G
Sbjct: 182  DLMR---GGGEQHQGSANMAGRGGRGNQRGGSGGRGQRGGRGSSRGGRASWSGGRQSNQG 238

Query: 583  SYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTV 404
             Y              CQ+C    HTA +C++R + +FVP    AG     +N+ H    
Sbjct: 239  GY-IRRSNNSSDERPVCQVCFKKGHTAARCWHRFEEDFVPDEKLAG---AATNSYH---- 290

Query: 403  NIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNGTGSN 242
                        D  WY D+GAT+H+T +L  L++   Y G +++   +G+ ++
Sbjct: 291  -----------VDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTASGSDNS 333



 Score = 32.3 bits (72), Expect(2) = 1e-43
 Identities = 25/80 (31%), Positives = 35/80 (43%)
 Frame = -2

Query: 252 QDQTTGMVLLKGNLRNGLYCFNFLKANDPSCPTLKSTKFSHHTSQAASPVSAFSTDVQNK 73
           +D+ T  +LLKG    GLY         P+  T+K+         A   V         K
Sbjct: 346 KDKDTKNILLKGRCHKGLYPI-------PATSTIKN---------ALGAV---------K 380

Query: 72  NSLVTWHNRLGHASFDVVKK 13
            S+  WHNRLGH S  +V++
Sbjct: 381 PSMSRWHNRLGHPSSFIVRQ 400


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score =  182 bits (463), Expect = 2e-43
 Identities = 116/367 (31%), Positives = 176/367 (47%), Gaps = 6/367 (1%)
 Frame = -1

Query: 1330 QLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPK---EFLSETTTENTKKV-NP 1163
            Q I+ +LT++N+ +WK  +   + G  ++GYLTG  +VP    E       E TKKV NP
Sbjct: 15   QAISEKLTKNNFSLWKTHILPVICGARMEGYLTGATQVPSAEIEVKEGEKGEITKKVSNP 74

Query: 1162 AYISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQL 983
            AY +WI  DQ          S+ IL+ V   +T+   WK +    ++Q+ A+ +  R+ L
Sbjct: 75   AYEAWIAADQQVLGFLLSSISKEILIQVANVDTAAHAWKMIVGLLSTQSRARALNTRIAL 134

Query: 982  QTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLA 803
             T +KG   + D+++K+K+  D +A+AG  +++ E   YIL+GL S+Y  V+ ++  R  
Sbjct: 135  ATTQKGESSVSDYISKMKTLADEMASAGKPLDDEEFTSYILAGLDSDYEQVVSSIVGRSE 194

Query: 802  HFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNRRGGFTLQGGRRRTPNQ 623
              T+S+ +S LLSFE   +   SS     G+  SVN A H +N  GG     G     N+
Sbjct: 195  GVTISEVYSQLLSFEELWQTNGSS-----GSYSSVNSANHGRNNGGGGNFNNGGGYFSNR 249

Query: 622  YFNGRGGRTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNN--NA 449
               GRGG    RG                CQ+C    H    C++  D +FVP      A
Sbjct: 250  ---GRGGGRGDRGGCGRGNGGRNFKPRPTCQLCSKVGHVVADCWHCYDDSFVPDARVAAA 306

Query: 448  GNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKV 269
             +Y V SN                      WY D+GAT+H+T +L  L     Y G E++
Sbjct: 307  ASYGVDSN----------------------WYVDTGATDHITNELEKLTTRDRYNGKEQI 344

Query: 268  QIGNGTG 248
               +G+G
Sbjct: 345  HTASGSG 351


>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
          Length = 646

 Score =  181 bits (460), Expect = 5e-43
 Identities = 110/388 (28%), Positives = 199/388 (51%), Gaps = 7/388 (1%)
 Frame = -1

Query: 1390 MSTQTQNDGGSMDQPIQPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPK 1211
            M+TQT      ++  +    Q +T +L  +N+L+W+ Q+   V     +  L G    P 
Sbjct: 27   MATQTTG----INSNLPTFGQTLTIKLDRNNFLIWRNQLLNIVVANGYEDILEGTRSCPY 82

Query: 1210 EFLSETTTENTKK----VNPAYISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKW 1043
            ++++ T T +T      +NP Y+ W RQ++          +E ++  ++  N++ E+W  
Sbjct: 83   QWIAVTDTASTTHGSVILNPEYVLWQRQNRLVMSWIYSSLTEQMMTQIMAYNSACEIWTA 142

Query: 1042 LENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYI 863
            L  ++AS + A++M+ RLQLQT RKG   + D++ +++  CD L A G  +   +Q+M +
Sbjct: 143  LRESYASASRARIMELRLQLQTTRKGGLSVMDYMLRIQHICDHLRAIGESVSIDDQVMAV 202

Query: 862  LSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATH 683
            L+GLGSEYN ++ ++TSRL   ++    S L ++E RLE  ++S+      Q +  +   
Sbjct: 203  LAGLGSEYNPIVASITSRLDSISVQALQSYLETYEKRLE-IQNSVEQHIPLQANAAMYNS 261

Query: 682  QQNRRGGFTLQGGRRRTPNQYFNGRGGRTNHRGSY---XXXXXXXXXXXXXRCQICHYSN 512
             + +R  +       +TP    +    R + +G +                +CQIC    
Sbjct: 262  NRGKRKPYQQNFHHSQTPVTATHNFNHRNSSQGGFRGGHSNKGRANPGSRPQCQICCKIG 321

Query: 511  HTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATN 332
            H A +C++R D  F P  +++  +   S++  +P   +A  G      +  W+ D+GAT+
Sbjct: 322  HVATECWHRFDNQFQPKASHSNQF---SSSAQDPQALMAAPG---LLGETPWFLDTGATH 375

Query: 331  HVTYDLSNLNLAADYQGNEKVQIGNGTG 248
            HVT DL+NL+L   + G++KV +GNG G
Sbjct: 376  HVTSDLANLSLHNPFSGDDKVIVGNGKG 403


>ref|NP_001056109.1| Os05g0527300 [Oryza sativa Japonica Group]
            gi|113579660|dbj|BAF18023.1| Os05g0527300 [Oryza sativa
            Japonica Group] gi|215697357|dbj|BAG91351.1| unnamed
            protein product [Oryza sativa Japonica Group]
          Length = 363

 Score =  179 bits (455), Expect = 2e-42
 Identities = 114/374 (30%), Positives = 179/374 (47%), Gaps = 12/374 (3%)
 Frame = -1

Query: 1324 ITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKV----NPAY 1157
            I+ +L++SN+ +WK QV AAV+G  L+G+LTG  K P   ++ T  +  +K     NP +
Sbjct: 18   ISEKLSKSNHALWKAQVMAAVRGARLEGHLTGATKTPNALITTTAGDKGEKEVTVRNPEF 77

Query: 1156 ISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQT 977
              W+  DQ          + ++L  V    T+   W+ LE  ++S   A+ +  R+ L  
Sbjct: 78   DDWVATDQQVLGFLLSTLARDVLAQVATCGTAAAAWQMLEEMYSSVTRARFINTRIALSN 137

Query: 976  MRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHF 797
             +KG   + ++++K+K+  D + AAG  +++ + I YI++GL   Y  V+ T+  +    
Sbjct: 138  TKKGTLSINEYVSKMKALADEMTAAGKIVDDDDLISYIIAGLDDTYEPVISTIVGK-DTM 196

Query: 796  TLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQ-----NRRGGFTLQGGRRRT 632
            TL +A+S LLSFE RL           G   SVN+A   +      +RGG T  GGR R 
Sbjct: 197  TLGEAYSQLLSFEQRLALRH-------GGDSSVNLANRGRGGGGGQQRGGNTGNGGRGRG 249

Query: 631  PNQYFNGRGGRTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNN 452
             N   N    R   RG+              +CQ+C+   HT   C+YR D +FVP    
Sbjct: 250  GN---NNGANRGRGRGNNGGARPPGGVDNRPKCQLCYKRGHTVINCWYRYDEDFVPDEKY 306

Query: 451  AG---NYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQG 281
            AG   +Y + +N                      WY D+ AT+HVT +L  L +   Y+G
Sbjct: 307  AGSATSYGIDTN----------------------WYVDTSATDHVTGELDKLTVRDRYKG 344

Query: 280  NEKVQIGNGTGSNH 239
             ++V   +G GS H
Sbjct: 345  QDQVHTASGAGSGH 358


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  179 bits (453), Expect = 3e-42
 Identities = 109/364 (29%), Positives = 178/364 (48%), Gaps = 7/364 (1%)
 Frame = -1

Query: 1324 ITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKV-NPAYISW 1148
            +T +L++ NYL+WK+QV A ++G  LD YLTG  K P   +     E   +V NPA   W
Sbjct: 18   VTEKLSKGNYLIWKVQVLAVIRGARLDSYLTGATKKPSATIIIKKNEKEVEVSNPAVDEW 77

Query: 1147 IRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRK 968
            I  DQ          S ++L  V   +++  +W  +E  F+S   A+ +  ++ L   +K
Sbjct: 78   IANDQQVLGYLLTTMSRDVLSQVATCSSAASLWSTIEGMFSSATRARSINTKIALTNTKK 137

Query: 967  GNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLS 788
            G+  + ++++K++   D LA +G  ++E + I YI++GL  ++  ++ +L S+  H +L 
Sbjct: 138  GDLGIAEYVSKMRVLADELATSGKPVDEEDLISYIIAGLDEDFEPIISSLVSKSEHVSLG 197

Query: 787  DAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNRRGGFTLQGGRRRTPNQYFNGR 608
            +A+S LLSFE R++  +         + S N+A   + R  G   +G   + P Q   G 
Sbjct: 198  EAYSQLLSFEQRMKMRQ---------EHSANLANRGRGR--GNPGRGRNNKQPQQQQRGH 246

Query: 607  GGRTNHRG---SYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNNAG--- 446
            GG +  RG   +              +CQ+C+   HT   C+YR D +FVP    AG   
Sbjct: 247  GGNSRGRGRGNNSNQRQGGNGVDYRPKCQLCYKRGHTVIDCWYRYDEDFVPDEKYAGTTA 306

Query: 445  NYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKVQ 266
            +Y V SN                      WY D+G T+HVT +L  L +   Y+G ++VQ
Sbjct: 307  SYGVDSN----------------------WYVDTGTTDHVTGELEKLTIRDKYKGQDQVQ 344

Query: 265  IGNG 254
              NG
Sbjct: 345  TANG 348


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  178 bits (452), Expect = 4e-42
 Identities = 114/365 (31%), Positives = 175/365 (47%), Gaps = 4/365 (1%)
 Frame = -1

Query: 1315 RLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKVNPAYISWIRQD 1136
            +LT+ NYL+WK QV  A++   LD  LTG    P + +S+ +       NPAY  WI +D
Sbjct: 23   KLTKGNYLLWKAQVLPAIRAAQLDDILTGVEICPPKTISDASDRTVTVANPAYGRWIARD 82

Query: 1135 QXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQC 956
            Q          S  +L SVV  +TS  VW  L   ++S + A+ +  R+ L T +KG   
Sbjct: 83   QAVLGYLLSSLSREVLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASS 142

Query: 955  MRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHS 776
            + ++  K++   D L AAG  +++ E + ++L+GL  ++N ++  + +R    T  D ++
Sbjct: 143  VAEYFAKMRGFADELGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYT 202

Query: 775  MLLSFENR--LENTESSLGNFDGTQFSVNIATHQQNRRG-GFTLQGGRRRTPNQYFNGRG 605
             LLS+ENR  L+   SSL        S           G GF+   GR R P+     RG
Sbjct: 203  QLLSYENRMHLQTGSSSLMQSSANARSPGRGMSWGRSGGRGFSRGRGRGRGPS-----RG 257

Query: 604  G-RTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQS 428
            G ++  RG+              RCQ+C    HTA  C+YR D N+VP   +        
Sbjct: 258  GFQSFGRGNNYSGATDADTSSRPRCQVCSRVGHTALNCWYRFDENYVPDQRS-------- 309

Query: 427  NNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNGTG 248
                      AN   ++N  ++ WY D+GAT+H+T DL  L +   Y G +++   NGTG
Sbjct: 310  ----------ANSAAHQNGSNVPWYTDTGATDHITGDLDRLTMHDKYTGTDQIIAANGTG 359

Query: 247  SNHRN 233
                N
Sbjct: 360  MTISN 364


>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1145

 Score =  178 bits (451), Expect = 6e-42
 Identities = 117/387 (30%), Positives = 186/387 (48%), Gaps = 8/387 (2%)
 Frame = -1

Query: 1336 QSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTT-ENTKKVNPA 1160
            Q   ++ +L ++NY +WK+Q+ AAV+G  L G+LTG  + P+  ++ T   ++TKK NPA
Sbjct: 16   QGHTVSEKLGKNNYALWKVQICAAVRGARLQGHLTGASEKPEAEVTVTADGKSTKKANPA 75

Query: 1159 YISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQ 980
            +  W   DQ          S ++L+ V    T+ EVW  +E  ++    A+ M  R  L 
Sbjct: 76   FEDWEALDQQVLGYLLSSLSRDVLMQVAACETAAEVWATIERMYSMHTRARTMNTRFALT 135

Query: 979  TMRKGNQCMRDFLNKVKSCCDLLAAA-GHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLA 803
              +KGN  + +F  K+K+  D +AA+ G  ++E E I +I++GLG  Y+ V+  + +R  
Sbjct: 136  NTKKGNMTLPEFFGKMKALGDEMAASTGRPVDEEEMIQHIIAGLGEGYSKVISVVCARPE 195

Query: 802  HFTLSDAHSMLLSFENRLENTESSLGNFDGTQFS-VNIATHQQNRRGGFTLQGGRRRTPN 626
              T+SD +S +++FE R       +  + GTQ   VN+A    NR  G    GGR    N
Sbjct: 196  PMTVSDLYSQVVNFEGR-------MALYRGTQEGVVNLA----NRSSGGNNGGGRGGYTN 244

Query: 625  QYFNG--RGGRTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNN 452
            +   G  RG    + G                CQ+C    HTA  C+YR D ++VP + +
Sbjct: 245  RGSGGAPRGRGRGNGGGRGRGRAPGGPDRKPTCQVCFKRGHTATDCWYRYDEDYVPDDKH 304

Query: 451  AGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEK 272
                              A   ++    D  WY D+GAT+H+T +L  L     Y GNE+
Sbjct: 305  VA----------------AATASSSYGVDTNWYIDTGATDHITGELEKLTTKDKYNGNEQ 348

Query: 271  VQIGNGTGSNHR---NGAPQGES*KWP 200
            +   +G  S+     N   Q +S + P
Sbjct: 349  IHTASGADSSDESVCNACQQAKSHQLP 375


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  177 bits (449), Expect = 9e-42
 Identities = 120/390 (30%), Positives = 185/390 (47%), Gaps = 9/390 (2%)
 Frame = -1

Query: 1390 MSTQTQNDGGSMDQPI--QPQSQLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKV 1217
            M++ ++N+ G+   P+  QP S+    +L +SN+ VWK Q+ A ++G  L+G+LTG+ + 
Sbjct: 1    MASSSKNNTGN---PLVGQPVSE----KLGKSNHAVWKAQILATIRGARLEGHLTGDDQP 53

Query: 1216 PKEFLSETTTENTKKV-NPAYISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWL 1040
            P   L     E    V NP Y  W+  DQ          ++++LV V    T+   W  +
Sbjct: 54   PAPILRRKEGEKEVVVSNPEYEEWVATDQQVLAYLLSSMTKDLLVQVATCRTAASAWSMI 113

Query: 1039 ENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYIL 860
            +  F S   A+ +  RL L T++KG+  +  ++ K+++  D L A G  +++ E I YI 
Sbjct: 114  QGMFGSMTRARTINTRLSLSTLQKGDMNITTYVGKMRALADDLMAVGKPVDDDELIGYIF 173

Query: 859  SGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQ 680
            +GL  E+  V+ T+  R    T+ + ++ L+SFE RL +  S      G Q SVN A+  
Sbjct: 174  AGLDDEFEPVISTIVGRPDPVTIGETYAQLISFEQRLAHRRS------GDQSSVNSASRS 227

Query: 679  --QNRRGGFTLQGGRRRTPNQYFNGRG-GRTNHRGSYXXXXXXXXXXXXXRCQICHYSNH 509
              Q +RGG    G   R      NG   GR     S              +CQ+C+   H
Sbjct: 228  RGQPQRGGSRSGGDSNRGRGAPSNGANRGRGRGNPSGGRANVGGGTDNRPKCQLCYKRGH 287

Query: 508  TADKCFYRCDLNFVPSNNNAG---NYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGA 338
            T   C+YR D NFVP    AG   +Y V +N                      WY D+GA
Sbjct: 288  TVCDCWYRYDENFVPDERFAGTAVSYGVDTN----------------------WYLDTGA 325

Query: 337  TNHVTYDLSNLNLAADYQGNEKVQIGNGTG 248
            T+HVT +L  L +   Y GN++V   +G G
Sbjct: 326  TDHVTGELDKLTVRDKYHGNDQVHTASGAG 355


>emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]
          Length = 1635

 Score =  177 bits (448), Expect = 1e-41
 Identities = 105/286 (36%), Positives = 154/286 (53%), Gaps = 7/286 (2%)
 Frame = -1

Query: 1090 LVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTMRKGNQCMRDFLNKVKSCCDLL 911
            +  ++G N+S   W  LE  F+S + A++MQ RL+LQ+ +KG+  M D++ KVK   D L
Sbjct: 1    MAQIIGHNSSHFAWNALEKTFSSSSRARIMQLRLELQSTKKGSLSMIDYIMKVKGAADSL 60

Query: 910  AAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFTLSDAHSMLLSFENRLENTESS 731
            AA G  I E +Q+M +L GLGS+YN+V+  +  R    ++   HSMLL+FE+RLE  +SS
Sbjct: 61   AAIGEPILEQDQVMNLLDGLGSDYNAVVTAINIRDDKISIEAVHSMLLAFEHRLEQ-QSS 119

Query: 730  LGNFDGTQFSVNIATHQQNRRGGFTLQGGR--RRTPN-----QYFNGRGGRTNHRGSYXX 572
            +  F  +  S N A+   +R GG    GGR    TPN         GRGGR    G +  
Sbjct: 120  IEQF--SPISANYASSXNSRGGGRRYNGGRGQNHTPNISNYTYRGRGRGGRYGXNGRH-- 175

Query: 571  XXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNNAGNYQVQSNNVHNPTVNIAN 392
                       +CQ+C    HT   C++R D+++  S     +     +N  NP    A 
Sbjct: 176  ---NSNSFEKPQCQLCGKFGHTVQICYHRFDISYQSSQ----SINTSPSNAGNPNSIPAM 228

Query: 391  VGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQGNEKVQIGNG 254
            V ++ N  D  WY DSGA++H+T  + NL  ++ Y G +KV IGNG
Sbjct: 229  VASSNNLADDTWYLDSGASHHLTQSVGNLTSSSPYTGTDKVTIGNG 274


>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
            Group] gi|108710062|gb|ABF97857.1| retrotransposon
            protein, putative, Ty1-copia subclass, expressed [Oryza
            sativa Japonica Group]
          Length = 1021

 Score =  176 bits (445), Expect = 3e-41
 Identities = 113/373 (30%), Positives = 180/373 (48%), Gaps = 12/373 (3%)
 Frame = -1

Query: 1330 QLITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKVN-PAYI 1154
            Q +  +LT +N+L+WK Q+   ++G  ++GYLTG  + P   +     E T K + PA+ 
Sbjct: 15   QAVAEKLTRTNFLLWKAQILPVIRGARMEGYLTGATQAPLAVIDAKDGEATVKASKPAFE 74

Query: 1153 SWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQTM 974
             WI  DQ          S+ IL  V+   ++ +VWK +    +SQ+ A+ +  RL L T 
Sbjct: 75   MWITADQQVLGFLLSTLSKEILTQVISMESAAQVWKAITEMLSSQSRARALNTRLALATT 134

Query: 973  RKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHFT 794
             KG+  + D+++K+K   D +A AG  +++ E I Y+L+GL  +Y  V+ +L  +    +
Sbjct: 135  LKGDLSVSDYISKMKVLADEMAFAGKPLDDEELISYVLAGLDDDYEPVVSSLVGKSEVVS 194

Query: 793  LSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQNRRGGFT--LQGGR------- 641
            L++ +S LLSF++R +   ++         SVN A     + GG+T   +GGR       
Sbjct: 195  LAECYSQLLSFKSRQKLRHAAAHQAS----SVNAARRGGGKGGGYTPFNRGGRSGGNNNG 250

Query: 640  RRTPNQYFNGRGGRTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPS 461
            RR+ N    GRGGR N+ G                C +C  + H    C+YR D NFVP 
Sbjct: 251  RRSNNG--GGRGGRGNNNGD-------RGGKPHPVCHLCGKTGHVVADCWYRYDENFVPE 301

Query: 460  NN--NAGNYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADY 287
            N    A +Y V +N                      WY D+GAT+H+T +L  L     Y
Sbjct: 302  NKIAAAASYGVDTN----------------------WYVDTGATDHITGELDKLTTREKY 339

Query: 286  QGNEKVQIGNGTG 248
             G +++   +G G
Sbjct: 340  NGKDQIYTASGAG 352


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  175 bits (443), Expect = 5e-41
 Identities = 112/371 (30%), Positives = 177/371 (47%), Gaps = 12/371 (3%)
 Frame = -1

Query: 1324 ITCRLTESNYLVWKMQVWAAVKGYSLDGYLTGEVKVPKEFLSETTTENTKKV----NPAY 1157
            I+ +L++SN+ +WK QV AAV+G  L+G+LTG  K P   ++ T  +  +K     NP +
Sbjct: 18   ISEKLSKSNHALWKAQVMAAVRGARLEGHLTGATKTPNALITTTAGDKGEKEVTVRNPEF 77

Query: 1156 ISWIRQDQXXXXXXXXXXSENILVSVVGSNTSMEVWKWLENNFASQNAAKVMQYRLQLQT 977
              W+  DQ          + ++L  V    T+   W+ LE  ++S   A+ +  R+ L  
Sbjct: 78   DDWVATDQQVLGFLLSTLARDVLAQVATCGTAAAAWQMLEEMYSSVTRARFINTRIALSN 137

Query: 976  MRKGNQCMRDFLNKVKSCCDLLAAAGHKIEEPEQIMYILSGLGSEYNSVLVTLTSRLAHF 797
             +KG   + ++++K+K+  D + AAG  +++ + I YI++GL   Y  V+ T+  +    
Sbjct: 138  TKKGTLSINEYVSKMKALADEMTAAGKIVDDDDLISYIIAGLDDTYEPVISTIVGK-DTM 196

Query: 796  TLSDAHSMLLSFENRLENTESSLGNFDGTQFSVNIATHQQ-----NRRGGFTLQGGRRRT 632
            TL +A+S LLSFE RL           G   SVN+A   +      +RGG T  GGR R 
Sbjct: 197  TLGEAYSQLLSFEQRLALRH-------GGDSSVNLANRGRGGGGGQQRGGNTGNGGRGRG 249

Query: 631  PNQYFNGRGGRTNHRGSYXXXXXXXXXXXXXRCQICHYSNHTADKCFYRCDLNFVPSNNN 452
             N   N    R   RG+              +CQ+C+   HT   C+YR D +FVP    
Sbjct: 250  GN---NNGANRGRGRGNNGGARPPGGVDNRPKCQLCYKRGHTVINCWYRYDEDFVPDEKY 306

Query: 451  AG---NYQVQSNNVHNPTVNIANVGNNENAEDLCWYPDSGATNHVTYDLSNLNLAADYQG 281
            AG   +Y + +N                      WY D+ AT+HVT +L  L +   Y+G
Sbjct: 307  AGSATSYGIDTN----------------------WYVDTSATDHVTGELDKLTVRDRYKG 344

Query: 280  NEKVQIGNGTG 248
             ++V   +G G
Sbjct: 345  QDQVHTASGAG 355