BLASTX nr result
ID: Rehmannia25_contig00026414
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rehmannia25_contig00026414
(560 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006485550.1| PREDICTED: uncharacterized protein LOC102627... 59 1e-15
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 61 9e-13
gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana] 60 1e-12
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana] 60 1e-12
ref|XP_006471307.1| PREDICTED: uncharacterized protein LOC102611... 50 7e-12
gb|AAM01128.1|AC108884_10 putative non-LTR retroelement reverse ... 54 2e-11
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 55 4e-11
gb|EMJ00096.1| hypothetical protein PRUPE_ppa015748mg, partial [... 52 2e-10
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 48 4e-10
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 49 6e-10
gb|ADB85341.1| putative retrotransposon protein [Phyllostachys e... 45 6e-10
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 64 8e-10
gb|AAD17395.1| putative non-LTR retroelement reverse transcripta... 55 1e-09
emb|CAN63032.1| hypothetical protein VITISV_024672 [Vitis vinifera] 44 1e-09
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 53 2e-09
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 53 5e-09
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid... 56 5e-09
gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indi... 49 6e-09
gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza ... 49 6e-09
gb|ABF94843.1| retrotransposon protein, putative, unclassified, ... 45 8e-09
>ref|XP_006485550.1| PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
Length = 473
Score = 58.5 bits (140), Expect(2) = 1e-15
Identities = 33/103 (32%), Positives = 50/103 (48%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F F+ + + + V D W +GN IQ KI AC +L+W + L+R+ KRI
Sbjct: 244 FRFENLWLCEPDCQPIVQDSWASSGN----VSIQSKINACGSDLLRWGSYLSRDFHKRIR 299
Query: 130 DCKNELEELRKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
DCK + LR L + + + + NE E+FW Q+S
Sbjct: 300 DCKQRIGVLRGLRDVVSLGDFTEARNRYNELLHSHEIFWKQRS 342
Score = 50.1 bits (118), Expect(2) = 1e-15
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGY-FTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFK 378
F D ++D+ + + L +GY FTW ++ + ++EE+LD S +W+ F QA+VS++
Sbjct: 162 FKDVVSDLGLHD-LGMEGYQFTWEMSKGNKNWLEERLDHGLASINWIRLFPQAKVSSLKA 220
Query: 377 TASDHVLLVLNSSP 336
+ SDH+ + + +P
Sbjct: 221 SCSDHLHIFFDPNP 234
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
[Arabidopsis thaliana]
Length = 1333
Score = 60.8 bits (146), Expect(2) = 9e-13
Identities = 40/106 (37%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWD---RNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEK 140
F FDKRL Q KET+V W+ RN N + +K+K CR + +W N NS
Sbjct: 242 FRFDKRLFNQPNVKETIVQAWNGSQRNEN----LLVLDKLKHCRSALSRWKKENNINSST 297
Query: 139 RILDCKNELEELRKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
RI + L EL + G + LK + +A EE+FWSQKS
Sbjct: 298 RITQARAAL-ELEQSSGFPRADLVFSLKNDLCKANHDEEVFWSQKS 342
Score = 38.1 bits (87), Expect(2) = 9e-13
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
F D + M E+ S FTW + E +++ +LDR FG+ +W F + + K
Sbjct: 162 FTDMLDSCDMLELPSIGNPFTWGG-KTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKR 220
Query: 374 ASDH 363
SDH
Sbjct: 221 GSDH 224
>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 60.1 bits (144), Expect(2) = 1e-12
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F FDKR + ++ KE ++ W R +GT + + ++++ACR + W N NS L
Sbjct: 203 FRFDKRFLFKEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNS----L 257
Query: 130 DCKNELEELRKLGGDRDW---NKWGDLKYQMNEAYKQEELFWSQKS 2
D N+LE + W + LK + +AY++EE +W QKS
Sbjct: 258 DKINQLEAALEKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKS 303
Score = 38.1 bits (87), Expect(2) = 1e-12
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
FN+ I + E+ + FTWA R + +++ +LDR FG+ +W F + + +
Sbjct: 123 FNEMIKGCDLVEMPAHGNGFTWAGRRGDH-WIQCRLDRAFGNKEWFCFFPVSNQTFLDFR 181
Query: 374 ASDH--VLLVLNSS 339
SDH VL+ L SS
Sbjct: 182 GSDHRPVLIKLMSS 195
>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 60.1 bits (144), Expect(2) = 1e-12
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F FDKR + ++ KE ++ W R +GT + + ++++ACR + W N NS L
Sbjct: 206 FRFDKRFLFKEDVKEAIIRTWSRGKHGTNI-SVADRLRACRKSLSSWKKQNNLNS----L 260
Query: 130 DCKNELEELRKLGGDRDW---NKWGDLKYQMNEAYKQEELFWSQKS 2
D N+LE + W + LK + +AY++EE +W QKS
Sbjct: 261 DKINQLEAALEKEQSLVWPIFQRVSVLKKDLAKAYREEEAYWKQKS 306
Score = 38.1 bits (87), Expect(2) = 1e-12
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
FN+ I + E+ + FTWA R + +++ +LDR FG+ +W F + + +
Sbjct: 126 FNEMIKGCDLVEMPAHGNGFTWAGRRGDH-WIQCRLDRAFGNKEWFCFFPVSNQTFLDFR 184
Query: 374 ASDH--VLLVLNSS 339
SDH VL+ L SS
Sbjct: 185 GSDHRPVLIKLMSS 198
>ref|XP_006471307.1| PREDICTED: uncharacterized protein LOC102611747 [Citrus sinensis]
Length = 323
Score = 50.4 bits (119), Expect(2) = 7e-12
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
F ++D + +I FTW +R + +VEE+LDR + W+ RF +AQV ++ +
Sbjct: 59 FKQAVSDSGLLDIGMEGYQFTWERSRGTDNWVEERLDRVLATDLWISRFKEAQVWSLESS 118
Query: 374 ASDHVLLVLNSSP 336
SDH+ + ++ P
Sbjct: 119 TSDHLPIFIDPKP 131
Score = 45.4 bits (106), Expect(2) = 7e-12
Identities = 24/103 (23%), Positives = 47/103 (45%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F F+ + + E V W + + IQ+KI C +L+W +L ++ I
Sbjct: 141 FRFENMWLREANCAEVVRSSWSSSRG----YLIQQKILECGSALLRWGGHLAQDFRNHIS 196
Query: 130 DCKNELEELRKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
+C+ + LR ++ +++ + NE +E+FW Q+S
Sbjct: 197 ECRRRMTLLRGRRDSAGLEEFLEVRKRFNELLHSQEVFWKQRS 239
>gb|AAM01128.1|AC108884_10 putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1228
Score = 54.3 bits (129), Expect(2) = 2e-11
Identities = 26/71 (36%), Positives = 43/71 (60%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
FN FIA++ + EI S FTW N ++ V+E LDR ++DW + A +S++ +
Sbjct: 681 FNSFIANLDLREIYRSGPKFTWTNK--QDSLVQEVLDRILVTTDWDDMYPTALLSSILRV 738
Query: 374 ASDHVLLVLNS 342
SDH+ L+L++
Sbjct: 739 GSDHIPLLLDT 749
Score = 40.0 bits (92), Expect(2) = 2e-11
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNS---EK 140
F F+ + ++ FKE V+ N + +K + R ++ W N NR+ EK
Sbjct: 760 FKFESAWLAEESFKELVIQRLLPRDNSYILEFWNKKQSSLRRFLVGWGKN-NRSKKLREK 818
Query: 139 RILDCKNELEELRK------LGGDRDWNKWGDLKYQMNEAYKQEELFWSQK 5
R L CK +EEL K L D +WN+ + + Y+ EEL+W ++
Sbjct: 819 RTLQCK--IEELDKKALTEELTSD-EWNQRYSWENDLEHIYEMEELYWHKR 866
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1374
Score = 55.1 bits (131), Expect(2) = 4e-11
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F +DKR + ++GFK+ + + W + T + EKI +CR I KW +S RI
Sbjct: 240 FKYDKRWVQREGFKDLLCNFWSQQSTKTNAL-MMEKIASCRREISKWKRVSKPSSAVRIQ 298
Query: 130 DCKNELEELRK-LGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
+ + +L+ K + DR + LK ++++ Y EE FW +KS
Sbjct: 299 ELQFKLDAATKQIPFDR--RELARLKKELSQEYNNEEQFWQEKS 340
Score = 38.1 bits (87), Expect(2) = 4e-11
Identities = 22/72 (30%), Positives = 37/72 (51%)
Frame = -1
Query: 560 VKFNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVF 381
++F + + E+ S F+W NR +E V+ +LDR + W+ F QA+ + +
Sbjct: 158 LEFRQMLNSCGLWEVNHSGYQFSWYGNRNDE-LVQCRLDRTVANQAWMELFPQAKATYLQ 216
Query: 380 KTASDHVLLVLN 345
K SDH L+ N
Sbjct: 217 KICSDHSPLINN 228
>gb|EMJ00096.1| hypothetical protein PRUPE_ppa015748mg, partial [Prunus persica]
Length = 949
Score = 52.4 bits (124), Expect(2) = 2e-10
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGY-FTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFK 378
F +F+A+ + + L GY FTW+N R E ++E+LDR SS W+ RF +A+VS+
Sbjct: 17 FRNFVANCGLLD-LGFVGYPFTWSNRREGER-IQERLDRALASSSWVHRFGEAKVSHHLV 74
Query: 377 TASDHVLLVLNSSP 336
+ SDH +++L P
Sbjct: 75 SGSDHAVILLEVEP 88
Score = 38.5 bits (88), Expect(2) = 2e-10
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F +D R + G + V D W G+ +++ EK+KA R + +W N++ RI
Sbjct: 97 FIYDHRWGKEVGCRTAVQDSWRWKCRGSACYRLVEKLKAARGNMRQWRRGAKTNTQCRIR 156
Query: 130 DCKNELE 110
+ EL+
Sbjct: 157 EINKELQ 163
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1319
Score = 48.1 bits (113), Expect(2) = 4e-10
Identities = 30/103 (29%), Positives = 49/103 (47%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F +DKR + + W NG + +K CR I W N + N++ RIL
Sbjct: 203 FCYDKRFAEDPQCAASTLSSWIGNGISDVSSSMLRMVK-CRKAISGWKKNSDFNAQNRIL 261
Query: 130 DCKNELEELRKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
++EL+E K W++ ++ Q+ A+++EE FW KS
Sbjct: 262 RLRSELDE-EKSKQYPCWSRISVIQTQLGVAFREEESFWRLKS 303
Score = 42.0 bits (97), Expect(2) = 4e-10
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
F + + + M ++ SS FTW R ++ +++ KLDR FG+S+W F+ + + K
Sbjct: 123 FKNMLLNCDMHQMGSSGNSFTWGGTRNDQ-WIQCKLDRCFGNSEWFTMFSNSHQWFLEKL 181
Query: 374 ASDHVLLVLN 345
S H +++N
Sbjct: 182 GSHHRPVLVN 191
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 49.3 bits (116), Expect(2) = 6e-10
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F F+ + ++ FKE V + WD + G + + G+ W++N+ + EKR+
Sbjct: 494 FRFEAAWLEEEKFKEVVKEAWDVSA-GLQGLPVHASLAGVAAGLSSWSSNVLGDLEKRVK 552
Query: 130 DCKNELEELRKLGGDRDWNKWGD-LKYQMNEAYKQEELFWSQKS 2
K ELE R+ RD + L+Y++ + +Q +++W Q++
Sbjct: 553 KVKKELETCRRQPISRDQVVREEVLRYRLEKLEQQVDIYWKQRA 596
Score = 40.0 bits (92), Expect(2) = 6e-10
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -1
Query: 557 KFNDFIADMQMEEILSSDGYFTWANN-RVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVF 381
+F + D ++++ FTW N+ +EG++ E+LDR + +W F A+V N
Sbjct: 406 EFRHALTDCGLDDLGFEGDAFTWRNHSHSQEGYIRERLDRAVANPEWRAMFPAARVINGD 465
Query: 380 KTASDH 363
SDH
Sbjct: 466 PRHSDH 471
>gb|ADB85341.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 486
Score = 45.4 bits (106), Expect(2) = 6e-10
Identities = 26/75 (34%), Positives = 36/75 (48%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
FN+FI + + EI G +TW N + V LDR F S DW +F V + +
Sbjct: 175 FNEFIYENDLIEIKKGGGKYTWTNKQKCPILVN--LDRVFVSLDWEAKFPLCHVQCLLRV 232
Query: 374 ASDHVLLVLNSSPRD 330
SDH ++L S D
Sbjct: 233 GSDHCPILLTSGETD 247
Score = 43.9 bits (102), Expect(2) = 6e-10
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWD--RNGNGTPMFQIQEK---IKACRVGILKWNANLN--- 155
F+++++ + QD F+ + + W +N + + + I A R + W ANLN
Sbjct: 254 FFYEQKWMCQDNFRNVIQNKWTEFKNRSSGDFYSLDTWNGIIAALRCFLRGWGANLNGAY 313
Query: 154 RNSEKRILDCKNELEELRKLGGDRD-----WNKWGDLKYQMNEAYKQEELFWSQK 5
R S+ RIL N+L+ L L D D W++ L+ ++ + Y EE W Q+
Sbjct: 314 RKSKDRIL---NQLKVLDSLVDDNDSNSEIWSQRFALEIELEKVYDLEEKHWQQR 365
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1225
Score = 63.5 bits (153), Expect(2) = 8e-10
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLW--DRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKR 137
F FDKR I + GFKE+V + W G G P FQ KIK CR I W + N+EK
Sbjct: 248 FIFDKRWINKPGFKESVQEGWAFPSRGEGVPFFQ---KIKNCRQTISIWKKSNKTNTEKL 304
Query: 136 ILDCKNELEELRKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
IL+ ++L +L + LK+++ +AY+ EE+FW K+
Sbjct: 305 ILELHSQL-DLAYEDENFSTEDLLALKWKLCQAYRDEEIFWKLKN 348
Score = 25.4 bits (54), Expect(2) = 8e-10
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Frame = -1
Query: 542 IADMQMEEILSSDGYFTWANNRV-------EEGFVEEKLDRFFGSSDWLLRFNQAQVSNV 384
I + M + S+ F+W R ++ +LDR G+ +W ++ V +
Sbjct: 164 IENCGMIDFPSTGSLFSWVGKRSCGVAGRKRRDLIKCRLDRAMGNEEWHSIYSHTNVEYL 223
Query: 383 FKTASDH 363
SDH
Sbjct: 224 QHRGSDH 230
>gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 55.1 bits (131), Expect(2) = 1e-09
Identities = 37/103 (35%), Positives = 50/103 (48%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F FDKRL Q KE + W+ N M Q+ E++K CR + +W N NS I
Sbjct: 206 FRFDKRLFNQPLVKEAIQQAWNGNQRVGGM-QVLERLKKCRSALSRWKQENNSNSLTCIS 264
Query: 130 DCKNELEELRKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
+ LE + G R + LK + +A + EE FWSQKS
Sbjct: 265 QARAALELEQSSGFPRSKVVF-TLKNDLCKANQDEETFWSQKS 306
Score = 33.5 bits (75), Expect(2) = 1e-09
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -1
Query: 560 VKFNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVF 381
+ F D + M E+ S F+W R +++ +LDR FG+ +W F + +
Sbjct: 124 ISFKDMLECCDMLELPSKGNPFSWGGKR-NSLWIQCRLDRCFGNKNWFRHFPVSNQEFLD 182
Query: 380 KTASD 366
K SD
Sbjct: 183 KRGSD 187
>emb|CAN63032.1| hypothetical protein VITISV_024672 [Vitis vinifera]
Length = 1413
Score = 44.3 bits (103), Expect(2) = 1e-09
Identities = 23/89 (25%), Positives = 40/89 (44%)
Frame = -2
Query: 268 ETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRILDCKNELEELRKLGG 89
E V W NG+ + K+ C + W L + RI + KN+++ L+ G
Sbjct: 598 EVVRQSWGPNGDS----DVMSKLVRCSKDLEDWGKRLRLKWKSRIKELKNQIKVLKWAGA 653
Query: 88 DRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
D +Y++N +QEE +W Q++
Sbjct: 654 SGDVALLNHAEYELNLVLRQEEEYWKQRA 682
Score = 43.9 bits (102), Expect(2) = 1e-09
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Frame = -1
Query: 515 LSSDGY----FTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKTASDHVLLVL 348
LS GY +TW R +VEE+LDR S+DW F+Q+++ ++F + SDH+ ++L
Sbjct: 511 LSDLGYVGYAYTWERGRGTTRWVEERLDRALVSADWKHLFHQSRLIHLFVSTSDHLPVLL 570
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 53.1 bits (126), Expect(2) = 2e-09
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLW--DRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKR 137
F FD RLI FK V W +RN TP I E+I +CR + + N NSE+R
Sbjct: 621 FRFDNRLIDIPTFKRIVQTSWRTNRNSRSTP---ITERISSCRQAMARLKHASNLNSEQR 677
Query: 136 ILDCKNELEELRKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
I ++ L + D L+ + +A+ EE++W QKS
Sbjct: 678 IKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKS 722
Score = 34.3 bits (77), Expect(2) = 2e-09
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
F + ++ +E++ S F+W R V+ LDR F +S W F A++ + T
Sbjct: 541 FRNMVSHCDIEDMRSKGDRFSWVGER-HTHTVKCCLDRVFINSAWTATFPYAEIEFLDFT 599
Query: 374 ASDH--VLLVLNSS 339
SDH VL+ N S
Sbjct: 600 GSDHKPVLVHFNES 613
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 53.1 bits (126), Expect(2) = 5e-09
Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLW--DRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKR 137
F FD RLI FK V W +RN TP I E+I +CR + + N NSE+R
Sbjct: 395 FRFDNRLIDIPTFKRIVQTSWRTNRNSRSTP---ITERISSCRQAMARLKHASNLNSEQR 451
Query: 136 ILDCKNELEELRKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
I ++ L + D L+ + +A+ EE++W QKS
Sbjct: 452 IKKLQSSLNRAMESTRRVDRQLIPQLQESLAKAFSDEEIYWKQKS 496
Score = 33.1 bits (74), Expect(2) = 5e-09
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
F + ++ +E++ S F+W R V+ LDR F +S W F A+ + T
Sbjct: 315 FRNMVSHCDIEDMRSKGDRFSWVGER-HTHTVKCCLDRVFINSAWTATFPYAETEFLDFT 373
Query: 374 ASDH--VLLVLNSS 339
SDH VL+ N S
Sbjct: 374 GSDHKPVLVHFNES 387
>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|7267666|emb|CAB78094.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Score = 56.2 bits (134), Expect(2) = 5e-09
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRIL 131
F FD+RL ++ + V ++W+ + ++ KI CR I+KW N NS K I
Sbjct: 184 FRFDRRLREKEEIRALVKEVWELARQDSVLY----KISRCRQSIIKWTKEQNSNSAKAIK 239
Query: 130 DCKNELEELRKLGGD-RDWNKWGDLKYQMNEAYKQEELFWSQKS 2
+ LE L D D + G + ++ AY+QEELFW Q S
Sbjct: 240 KAQQALES--ALSADIPDPSLIGSITQELEAAYRQEELFWKQWS 281
Score = 30.0 bits (66), Expect(2) = 5e-09
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
F F++ + +I + +W R F++ +LDR G+ W F ++ +
Sbjct: 104 FRSFVSQNGLWDINHTGNSLSWRGTRYSH-FIKSRLDRALGNCSWSELFPMSKCEYLRFE 162
Query: 374 ASDHVLLV 351
SDH LV
Sbjct: 163 GSDHRPLV 170
>gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 49.3 bits (116), Expect(2) = 6e-09
Identities = 23/94 (24%), Positives = 47/94 (50%)
Frame = -2
Query: 283 QDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRILDCKNELEEL 104
+ E + + W + + + I +K+K ++ W+ + N K+I D + +L EL
Sbjct: 207 ESSLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGEL 266
Query: 103 RKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
R +G N+ +K ++ E +EE++W Q+S
Sbjct: 267 RNIGLLDTDNEVHSVKKELEEMLHREEIWWKQRS 300
Score = 36.6 bits (83), Expect(2) = 6e-09
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
F + +++ + +I +T+ N + E V+ +LDR S W RF QA ++++
Sbjct: 116 FREVLSECDLHDIGFQGAPWTFCNMQREGRNVKVRLDRGVASPAWSSRFPQAVITHLTTP 175
Query: 374 ASDHVLLVL 348
+SDH L+L
Sbjct: 176 SSDHAPLLL 184
>gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 49.3 bits (116), Expect(2) = 6e-09
Identities = 23/94 (24%), Positives = 47/94 (50%)
Frame = -2
Query: 283 QDGFKETVVDLWDRNGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRILDCKNELEEL 104
+ E + + W + + + I +K+K ++ W+ + N K+I D + +L EL
Sbjct: 232 ESSLPEVIQEAWTMGADASTLGDINDKMKVTMTKLVSWSKDKIGNVRKKIKDLREKLGEL 291
Query: 103 RKLGGDRDWNKWGDLKYQMNEAYKQEELFWSQKS 2
R +G N+ +K ++ E +EE++W Q+S
Sbjct: 292 RNIGLLDTDNEVHSVKKELEEMLHREEIWWKQRS 325
Score = 36.6 bits (83), Expect(2) = 6e-09
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
F + +++ + +I +T+ N + E V+ +LDR S W RF QA ++++
Sbjct: 141 FREVLSECDLHDIGFQGAPWTFCNMQREGRNVKVRLDRGVASPAWSSRFPQAVITHLTTP 200
Query: 374 ASDHVLLVL 348
+SDH L+L
Sbjct: 201 SSDHAPLLL 209
>gb|ABF94843.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1686
Score = 45.4 bits (106), Expect(2) = 8e-09
Identities = 27/71 (38%), Positives = 40/71 (56%)
Frame = -1
Query: 554 FNDFIADMQMEEILSSDGYFTWANNRVEEGFVEEKLDRFFGSSDWLLRFNQAQVSNVFKT 375
FN I + + E+ SS FTWAN+ + F EKLDR S+++ +F + VS + +
Sbjct: 1074 FNAVIDTLNLRELESSGRSFTWANHLQNQTF--EKLDRILVSTEFETKFPLSTVSILTRE 1131
Query: 374 ASDHVLLVLNS 342
SDH L+ NS
Sbjct: 1132 ISDHTPLLYNS 1142
Score = 40.0 bits (92), Expect(2) = 8e-09
Identities = 28/109 (25%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Frame = -2
Query: 310 FYFDKRLIGQDGFKETVVDLWDR-NGNGTPMFQIQEKIKACRVGILKWNANLNRNSEKRI 134
F F+ + +DGF + V ++W + GTP+ + Q KI+ R + W N+ +K
Sbjct: 1153 FKFELGWLRRDGFSDIVKEVWQGVSIEGTPLERWQRKIRRLRQFLRGWAKNITGAYKKEK 1212
Query: 133 LDCKNELEELRKLGGDRDWNKWG-DLKYQMN----EAYKQEELFWSQKS 2
+ ++L+ L K N++ ++K+ +N E ++EE+ W Q++
Sbjct: 1213 KELLDKLDTLDKKAEHTILNEFELNVKHVLNDRLAELLREEEIKWYQRA 1261