BLASTX nr result

ID: Rehmannia25_contig00024411 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00024411
         (403 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004143230.1| PREDICTED: putative F-box/LRR-repeat protein...    62   8e-08
gb|AGO67237.1| f-box family protein [Silene vulgaris]                  60   4e-07
ref|XP_004300788.1| PREDICTED: F-box/LRR-repeat protein At3g0303...    57   2e-06
ref|XP_004298789.1| PREDICTED: F-box/LRR-repeat protein At4g1409...    57   2e-06

>ref|XP_004143230.1| PREDICTED: putative F-box/LRR-repeat protein At3g18150-like
           [Cucumis sativus] gi|449503744|ref|XP_004162155.1|
           PREDICTED: putative F-box/LRR-repeat protein
           At3g18150-like [Cucumis sativus]
          Length = 512

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 28/61 (45%), Positives = 38/61 (62%)
 Frame = -1

Query: 184 CPKRLKTCEVNKDFINDLPDPILVQILSFLPLRDAIRTVLLPRFGKLWLSMPVLDLDNCV 5
           C KR +T E   D+I+ LP+ +LV ILS+LP RDA++  L+ RF  LW  +  L  D C 
Sbjct: 4   CSKRTRTEEDRNDWISQLPESVLVDILSYLPTRDAVKMALISRFRNLWTYIHHLSFDECA 63

Query: 4   Y 2
           Y
Sbjct: 64  Y 64


>gb|AGO67237.1| f-box family protein [Silene vulgaris]
          Length = 456

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 27/59 (45%), Positives = 41/59 (69%)
 Frame = -1

Query: 178 KRLKTCEVNKDFINDLPDPILVQILSFLPLRDAIRTVLLPRFGKLWLSMPVLDLDNCVY 2
           KRL   + ++D +++LPD ++V+ILS++P+ DA+RTVLL RFG LW  +  L  D   Y
Sbjct: 7   KRLCLSKEDRDRLSELPDTVIVRILSYMPIIDAVRTVLLRRFGNLWTLVDTLKFDEDTY 65


>ref|XP_004300788.1| PREDICTED: F-box/LRR-repeat protein At3g03030-like [Fragaria vesca
           subsp. vesca]
          Length = 169

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = -1

Query: 178 KRLKTCEVNKDFINDLPDPILVQILSFLPLRDAIRT-VLLPRFGKLWLSMPVLDLD 14
           KRLK C  ++D I+ LPD IL  ILSFL  R+A++T VL  R+  +W S+P+LDLD
Sbjct: 15  KRLKPCSNHEDRISGLPDEILCHILSFLFTREAVKTSVLSHRWTNVWTSVPILDLD 70


>ref|XP_004298789.1| PREDICTED: F-box/LRR-repeat protein At4g14096-like [Fragaria vesca
           subsp. vesca]
          Length = 516

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
 Frame = -1

Query: 214 SSNEEKETGWCPKRLKTCEVNKDFINDLPDPILVQILSFLPLRDAIRT-VLLPRFGKLWL 38
           S+++ ++      RLK C  N+D I+ +PD +L  ILSFL  R+A++T VL  R+  +W 
Sbjct: 3   SNSKRRKMASYSNRLKLCSDNEDRISGMPDAVLCHILSFLSTREAVKTSVLSHRWNNVWA 62

Query: 37  SMPVLDLDNCVY 2
           S+P++D+D   Y
Sbjct: 63  SVPIVDVDEEQY 74


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