BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rehmannia25_contig00024199
         (751 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]    69   1e-26
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]    69   1e-26
emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]    67   2e-25
gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]                 65   8e-21
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]      62   2e-20
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]    59   8e-20
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...    65   8e-20
gb|AAP94600.1| putative copia-like retrotransposon Hopscotch pol...    65   9e-20
emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera]    63   1e-19
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...    60   1e-19
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc...    60   2e-19
emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]    55   2e-19
emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]    61   3e-19
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat...    71   3e-19
gb|AAX95626.1| Zinc knuckle, putative [Oryza sativa Japonica Gro...    56   4e-19
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...    60   7e-19
gb|ABA95720.1| retrotransposon protein, putative, Ty1-copia subc...    56   2e-18
dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica G...    55   9e-18
gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japo...    55   9e-18
emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera]    56   1e-17

>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score = 68.9 bits (167), Expect(3) = 1e-26
 Identities = 32/79 (40%), Positives = 50/79 (63%)
 Frame = -1

Query: 751 QLQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSR 572
           +LQ+ KKG M M +++ KIK   D L   G+ +S+ + +  ++ GLG DYN+V   IN R
Sbjct: 142 ELQSTKKGSMSMIDYIMKIKGAADNLAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIR 201

Query: 571 VEPYSLREVHALLLSFESR 515
            +  SL  +H++LL+FE R
Sbjct: 202 DDKISLEAIHSMLLAFEHR 220



 Score = 63.5 bits (153), Expect(3) = 1e-26
 Identities = 33/93 (35%), Positives = 53/93 (56%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 107
           +  HTA  C++R D+++       ++S NN + N       P +  ++SN  +++   W+
Sbjct: 294 KFGHTAQICYHRFDISFQGGQTTISHSLNNGNQNNI-----PAMVASASNNPADES--WY 346

Query: 106 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 8
            DSGA++H+T + GNL   S Y G DKV IGNG
Sbjct: 347 LDSGASHHLTQNLGNLTSTSPYTGTDKVTIGNG 379



 Score = 34.3 bits (77), Expect(3) = 1e-26
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = -3

Query: 461 SVNYINQGSRTGG---FNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG---RIAC 300
           S NY +  +  GG   FN G RG G +P  NN   R   RGG N   GR       +  C
Sbjct: 231 SANYASSSNNRGGGRKFN-GGRGQGYSPNNNNYTYRGRGRGGRNGQGGRQNSSPSEKPQC 289

Query: 299 QIC 291
           Q+C
Sbjct: 290 QLC 292


>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
          Length = 1365

 Score = 68.9 bits (167), Expect(3) = 1e-26
 Identities = 32/79 (40%), Positives = 49/79 (62%)
 Frame = -1

Query: 751 QLQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSR 572
           + Q+ KKG M M +++ K+K   D L   G+ +S+ + I  ++ GLG DYN+V   IN R
Sbjct: 139 EFQSTKKGSMSMIDYIMKVKGAADSLAAIGEPVSEQDQIMNLLGGLGSDYNAVVTAINIR 198

Query: 571 VEPYSLREVHALLLSFESR 515
            +  SL  VH++LL+FE R
Sbjct: 199 EDKISLEAVHSMLLAFEQR 217



 Score = 65.5 bits (158), Expect(3) = 1e-26
 Identities = 34/93 (36%), Positives = 53/93 (56%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 107
           +  HT   C++R D+T+ +T N  T   N+ ++N       P +  +S+N+    D  W+
Sbjct: 292 KFGHTVQVCYHRFDITFQSTQNNTTGVSNSGNSNSM-----PAMVASSNNL---ADDNWY 343

Query: 106 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 8
            DSGA++H+T +  NL  A+ Y G DKV IGNG
Sbjct: 344 LDSGASHHLTQNVANLTNATPYTGADKVTIGNG 376



 Score = 32.3 bits (72), Expect(3) = 1e-26
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = -3

Query: 461 SVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG---RIACQIC 291
           S NY +  +  GG  + N G G N    N   R   RGG     GR       R  CQ+C
Sbjct: 231 SANYASSSNNRGGGRKYNGGRGPNFMMTNSNFRGRGRGGRYGQSGRQNSSSSERPQCQLC 290


>emb|CAN67546.1| hypothetical protein VITISV_027734 [Vitis vinifera]
          Length = 1635

 Score = 67.0 bits (162), Expect(3) = 2e-25
 Identities = 34/93 (36%), Positives = 53/93 (56%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 107
           +  HT   C++R D++Y ++ ++NT   N  + N       P +  +S+N+    D  W+
Sbjct: 190 KFGHTVQICYHRFDISYQSSQSINTSPSNAGNPNSI-----PAMVASSNNL---ADDTWY 241

Query: 106 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 8
            DSGA++H+T   GNL  +S Y G DKV IGNG
Sbjct: 242 LDSGASHHLTQSVGNLTSSSPYTGTDKVTIGNG 274



 Score = 65.9 bits (159), Expect(3) = 2e-25
 Identities = 30/79 (37%), Positives = 49/79 (62%)
 Frame = -1

Query: 751 QLQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSR 572
           +LQ+ KKG + M +++ K+K   D L   G+ I + + +  ++ GLG DYN+V   IN R
Sbjct: 35  ELQSTKKGSLSMIDYIMKVKGAADSLAAIGEPILEQDQVMNLLDGLGSDYNAVVTAINIR 94

Query: 571 VEPYSLREVHALLLSFESR 515
            +  S+  VH++LL+FE R
Sbjct: 95  DDKISIEAVHSMLLAFEHR 113



 Score = 29.6 bits (65), Expect(3) = 2e-25
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
 Frame = -3

Query: 461 SVNYINQGSRTGGFNQGNRGSGSN--PFFNNRGGRASPRGGMNRGRGRFKHG---RIACQ 297
           S NY +  +  GG  + N G G N  P  +N   R   RGG     GR       +  CQ
Sbjct: 127 SANYASSXNSRGGGRRYNGGRGQNHTPNISNYTYRGRGRGGRYGXNGRHNSNSFEKPQCQ 186

Query: 296 IC 291
           +C
Sbjct: 187 LC 188


>gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]
          Length = 1012

 Score = 64.7 bits (156), Expect(3) = 8e-21
 Identities = 31/81 (38%), Positives = 48/81 (59%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRV 569
           L T  KG   + EF  K+K   D +  AG+ + DDE +SYI+ G+G ++ SV   + +R 
Sbjct: 105 LATATKGSSTVAEFFTKMKGLADEMASAGKKLDDDEVVSYILMGVGEEFESVTSAVANRT 164

Query: 568 EPYSLREVHALLLSFESRWKV 506
           +P SL E+ A L+S E R ++
Sbjct: 165 DPISLPELQAQLVSHEQRREI 185



 Score = 48.9 bits (115), Expect(3) = 8e-21
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
 Frame = -1

Query: 235 GATNNVNTYSQNN--------DSANLSQSGPDPNLANNSSNMDSNQDTIWFPDSGATNHV 80
           G  NN N ++ N           A  S SG  P  + +++      DT W+ D+GAT+H+
Sbjct: 236 GGHNNNNNFTNNTFLEGKAMVRIAATSMSGYPPKKSASAAATSYGVDTNWYMDTGATDHI 295

Query: 79  TYDFGNLNLASEYNGGDKVQIGNGT 5
           T +   L +   YNG D V   +G+
Sbjct: 296 TSELDQLTIRDRYNGNDHVHTASGS 320



 Score = 33.5 bits (75), Expect(3) = 8e-21
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -3

Query: 473 GTTPSVNYINQGSRTGG---FNQGNRGSGSNPFF--NNRGGRASPRGGMNRGRGRF 321
           G+  SVN   +G R GG   +++G RG G    F     GGR   RGG +     F
Sbjct: 189 GSHSSVNSAEKGGRRGGRPSYSRGGRGGGGRAGFGRGRNGGRNGGRGGGHNNNNNF 244


>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1210

 Score = 62.4 bits (150), Expect(3) = 2e-20
 Identities = 30/80 (37%), Positives = 48/80 (60%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRV 569
           L T +KG+  + ++++K+K   D +  AG+ + D+E  SYI+ GL  DY  V   I  R 
Sbjct: 134 LATTQKGESSVSDYISKMKTLADEMASAGKPLDDEEFTSYILAGLDSDYEQVVSSIVGRS 193

Query: 568 EPYSLREVHALLLSFESRWK 509
           E  ++ EV++ LLSFE  W+
Sbjct: 194 EGVTISEVYSQLLSFEELWQ 213



 Score = 44.7 bits (104), Expect(3) = 2e-20
 Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -3

Query: 482 GTEGTTPSVNYINQGSRTGGFNQGNRGSGSNPFFNN--RGGRASPRGGMNRGR-GRFKHG 312
           G+ G+  SVN  N G   GG    N G G   +F+N  RGG    RGG  RG  GR    
Sbjct: 216 GSSGSYSSVNSANHGRNNGGGGNFNNGGG---YFSNRGRGGGRGDRGGCGRGNGGRNFKP 272

Query: 311 RIACQICHR 285
           R  CQ+C +
Sbjct: 273 RPTCQLCSK 281



 Score = 38.9 bits (89), Expect(3) = 2e-20
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -1

Query: 169 PDPNLANNSS-NMDSNQDTIWFPDSGATNHVTYDFGNLNLASEYNGGDKVQIGNGT 5
           PD  +A  +S  +DSN    W+ D+GAT+H+T +   L     YNG +++   +G+
Sbjct: 299 PDARVAAAASYGVDSN----WYVDTGATDHITNELEKLTTRDRYNGKEQIHTASGS 350


>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
          Length = 1455

 Score = 59.3 bits (142), Expect(3) = 8e-20
 Identities = 32/94 (34%), Positives = 54/94 (57%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 107
           ++ H   +C+YR D T+    N++  S+N+         P  N    +S + S+ +  W+
Sbjct: 315 KIGHVVAQCYYRFDHTFQVPQNLS--SRNSSPRAYYSFSPQVNGVIPTSEVFSDDN--WY 370

Query: 106 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNGT 5
           PDSGA+NHVT +  NL  ++E+ G ++V +GNGT
Sbjct: 371 PDSGASNHVTPNPENLMKSAEFAGQNQVHVGNGT 404



 Score = 57.8 bits (138), Expect(3) = 8e-20
 Identities = 31/79 (39%), Positives = 45/79 (56%)
 Frame = -1

Query: 751 QLQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSR 572
           QLQ  KKG   + E+L KIK   D L   G ++S  +H+  I+ GL  DY S    +  R
Sbjct: 127 QLQHTKKGGSTIDEYLAKIKVCVDSLASVGVSLSTKDHVESILDGLPNDYESFVTSVILR 186

Query: 571 VEPYSLREVHALLLSFESR 515
            + +S+ E+ ALL++ ESR
Sbjct: 187 NDDFSVEEIEALLMAHESR 205



 Score = 26.6 bits (57), Expect(3) = 8e-20
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 20/72 (27%)
 Frame = -3

Query: 446 NQGSRTG---GFNQGNRGSGSNPFFNNRGGRASPRGGMNRG--RGRFKHG---------- 312
           +QGS +G   GF +G        F+  RG   +  G  NRG  RGR   G          
Sbjct: 242 SQGSHSGYNGGFGRGGDFGRRGGFYGGRGFNWNYNGRSNRGGFRGRGNKGSFQARPPWNS 301

Query: 311 -----RIACQIC 291
                + ACQ+C
Sbjct: 302 DNQNEKPACQLC 313


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 1313

 Score = 64.7 bits (156), Expect(3) = 8e-20
 Identities = 29/78 (37%), Positives = 51/78 (65%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRV 569
           L T KKG M + E+  K+K Y D +  AG+ + D+E + YI+TGL  ++  +   + +RV
Sbjct: 103 LSTTKKGSMTVAEYYTKMKGYGDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRV 162

Query: 568 EPYSLREVHALLLSFESR 515
           +P SL ++++ LL+FE++
Sbjct: 163 DPISLEDLYSQLLNFETK 180



 Score = 46.6 bits (109), Expect(3) = 8e-20
 Identities = 20/55 (36%), Positives = 35/55 (63%)
 Frame = -1

Query: 169 PDPNLANNSSNMDSNQDTIWFPDSGATNHVTYDFGNLNLASEYNGGDKVQIGNGT 5
           PD  LA  ++N   + DT W+ D+GAT+H+T +   L++  +Y GGD++   +G+
Sbjct: 277 PDEKLAGAATN-SYHVDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTASGS 330



 Score = 32.3 bits (72), Expect(3) = 8e-20
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 446 NQGSRTGGFNQ-GNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHGRIACQICHR 285
           NQ   +GG  Q G RGS      +  GGR S +GG  R        R  CQ+C +
Sbjct: 205 NQRGGSGGRGQRGGRGSSRGGRASWSGGRQSNQGGYIRRSNNSSDERPVCQVCFK 259


>gb|AAP94600.1| putative copia-like retrotransposon Hopscotch polyprotein [Zea
           mays]
          Length = 969

 Score = 64.7 bits (156), Expect(3) = 9e-20
 Identities = 29/78 (37%), Positives = 51/78 (65%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRV 569
           L T KKG M + E+  K+K Y D +  AG+ + D+E + YI+TGL  ++  +   + +RV
Sbjct: 103 LSTTKKGSMTVAEYYTKMKGYGDEMAAAGRPLQDEEMVEYILTGLEEEFLPMVSALVTRV 162

Query: 568 EPYSLREVHALLLSFESR 515
           +P SL ++++ LL+FE++
Sbjct: 163 DPISLEDLYSQLLNFETK 180



 Score = 46.6 bits (109), Expect(3) = 9e-20
 Identities = 20/55 (36%), Positives = 35/55 (63%)
 Frame = -1

Query: 169 PDPNLANNSSNMDSNQDTIWFPDSGATNHVTYDFGNLNLASEYNGGDKVQIGNGT 5
           PD  LA  ++N   + DT W+ D+GAT+H+T +   L++  +Y GGD++   +G+
Sbjct: 277 PDEKLAGAATN-SYHVDTNWYTDTGATDHITGELEKLSIREKYAGGDQIHTASGS 330



 Score = 32.3 bits (72), Expect(3) = 9e-20
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -3

Query: 446 NQGSRTGGFNQ-GNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHGRIACQICHR 285
           NQ   +GG  Q G RGS      +  GGR S +GG  R        R  CQ+C +
Sbjct: 205 NQRGGSGGRGQRGGRGSSRGGRASWSGGRQSNQGGYIRRSNNSSDERPVCQVCFK 259


>emb|CAN82452.1| hypothetical protein VITISV_003326 [Vitis vinifera]
          Length = 1139

 Score = 63.2 bits (152), Expect(3) = 1e-19
 Identities = 33/93 (35%), Positives = 51/93 (54%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 107
           +  HTA  C++R D+++       ++S NN + N       P +  ++SN  S  D  W+
Sbjct: 265 KFGHTAQICYHRFDISFQGGQTTTSHSLNNGNQNNI-----PTMVASASN--SPADESWY 317

Query: 106 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNG 8
            DSG ++H+T + GNL   S Y G D+V IGNG
Sbjct: 318 LDSGTSHHLTQNLGNLTSTSLYTGTDRVTIGNG 350



 Score = 52.0 bits (123), Expect(3) = 1e-19
 Identities = 24/66 (36%), Positives = 39/66 (59%)
 Frame = -1

Query: 718 MREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRVEPYSLREVHA 539
           +  ++ KIK   D L   G+ IS+ + +  ++ GLG DYN V   IN R +  SL  +H+
Sbjct: 124 LENYIMKIKGAADNLAAIGELISEQDQVMNLLGGLGSDYNVVVTAINIRDDKISLEAIHS 183

Query: 538 LLLSFE 521
           +LL+F+
Sbjct: 184 MLLAFK 189



 Score = 28.1 bits (61), Expect(3) = 1e-19
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
 Frame = -3

Query: 461 SVNYINQGSRTGGFNQGNRGSGSNPFFNNRG--GRASPRGGMNRGRGRFKHG---RIACQ 297
           S NY +  +  GG  + N G G     NN     R   RGG N   GR       +  CQ
Sbjct: 202 SANYASFSNNRGGGRKFNGGHGQGYTLNNNNYTYRGRGRGGRNGQGGRQNSSPSEKPQCQ 261

Query: 296 IC 291
           +C
Sbjct: 262 LC 263


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group]
          Length = 1621

 Score = 60.5 bits (145), Expect(3) = 1e-19
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAG-QNISDDEHISYIITGLGRDYNSVKVIINSR 572
           L   KKG+M   E+  K+K+  D +  AG + I ++E I YIITGLG  Y+ V   + +R
Sbjct: 218 LTNTKKGNMSTPEYFAKMKSLGDEMATAGGRPIDEEELIQYIITGLGEGYSEVVSAVCAR 277

Query: 571 VEPYSLREVHALLLSFESR 515
           VEP S+ ++++ +L+FE+R
Sbjct: 278 VEPISVSDLYSQVLNFEAR 296



 Score = 46.2 bits (108), Expect(3) = 1e-19
 Identities = 28/90 (31%), Positives = 46/90 (51%)
 Frame = -1

Query: 277 HTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDS 98
           HTA  C+YR D  Y             D+ +++ +      A NS  +D+N    W+ D+
Sbjct: 371 HTAADCWYRYDEDYVP-----------DAKHVAAA------AVNSYGVDTN----WYIDT 409

Query: 97  GATNHVTYDFGNLNLASEYNGGDKVQIGNG 8
           GAT+HVT +   L +  +YNGG+++   +G
Sbjct: 410 GATDHVTGELDKLTMKEKYNGGEQIHTASG 439



 Score = 36.2 bits (82), Expect(3) = 1e-19
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = -3

Query: 449 INQGSRTGGFNQGNRGSGSNPFFNNR----GGRASPRGGMNRGRGRFKHG---RIACQIC 291
           +N  +R GGF+ G RG+ +     +R    GG     GG  RGRGR   G   R  CQ+C
Sbjct: 308 VNVANR-GGFSHGGRGNSNGGQGGSRGGGGGGHGRGNGGGGRGRGRTPGGVDKRPICQVC 366

Query: 290 HR 285
            +
Sbjct: 367 FK 368


>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1478

 Score = 60.5 bits (145), Expect(3) = 2e-19
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAG-QNISDDEHISYIITGLGRDYNSVKVIINSR 572
           L   KKG+M   E+  K+K+  D +  AG + I ++E I YIITGLG  Y+ V   + +R
Sbjct: 250 LTNTKKGNMSTPEYFAKMKSLGDEMATAGGRPIDEEELIQYIITGLGEGYSEVVSAVCAR 309

Query: 571 VEPYSLREVHALLLSFESR 515
           VEP S+ ++++ +L+FE+R
Sbjct: 310 VEPISVSDLYSQVLNFEAR 328



 Score = 46.2 bits (108), Expect(3) = 2e-19
 Identities = 28/90 (31%), Positives = 46/90 (51%)
 Frame = -1

Query: 277 HTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDS 98
           HTA  C+YR D  Y             D+ +++ +      A NS  +D+N    W+ D+
Sbjct: 402 HTAADCWYRYDEDYVP-----------DAKHVAAA------AVNSYGVDTN----WYIDT 440

Query: 97  GATNHVTYDFGNLNLASEYNGGDKVQIGNG 8
           GAT+HVT +   L +  +YNGG+++   +G
Sbjct: 441 GATDHVTGELDKLTMKEKYNGGEQIHTASG 470



 Score = 35.4 bits (80), Expect(3) = 2e-19
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
 Frame = -3

Query: 449 INQGSRTGGFNQGNRGSGSNPFFNNRGG---RASPRGGMNRGRGRFKHG---RIACQICH 288
           +N  +R GGF+ G RG+ +     +RGG        GG  RGRGR   G   R  CQ+C 
Sbjct: 340 VNVANR-GGFSHGGRGNSNGGQGGSRGGGGGHGRRNGGGVRGRGRTPGGVDKRPICQVCF 398

Query: 287 R 285
           +
Sbjct: 399 K 399


>emb|CAN71996.1| hypothetical protein VITISV_023485 [Vitis vinifera]
          Length = 1087

 Score = 54.7 bits (130), Expect(3) = 2e-19
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNL-ANNSSNMDSNQDTIW 110
           +  HTA  C++  D+++     + + S NN + N        N+ A  +S+ +S  D  W
Sbjct: 144 KFGHTAQICYHXFDISFQGGQTITSPSLNNGNQN--------NIXAMVASSSNSPADESW 195

Query: 109 FPDSGATNHVTYDFGNLNLASEYNGGDKVQIGN 11
           + D GA++H+T + GN    S Y G D+V IGN
Sbjct: 196 YLDFGASHHLTQNLGNXTSTSPYTGTDRVTIGN 228



 Score = 54.3 bits (129), Expect(3) = 2e-19
 Identities = 26/68 (38%), Positives = 41/68 (60%)
 Frame = -1

Query: 724 MPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRVEPYSLREV 545
           M M +++ KIK   D L   G+ +S  + +  ++ GLG DYN+V   IN R +  SL  +
Sbjct: 1   MSMIDYIMKIKEAIDNLAAIGEPVSKQDQVMNLLGGLGFDYNAVVTAINIRDDNISLEAI 60

Query: 544 HALLLSFE 521
           H++LL+FE
Sbjct: 61  HSILLAFE 68



 Score = 33.1 bits (74), Expect(3) = 2e-19
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = -3

Query: 461 SVNYINQGSRTGG---FNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG---RIAC 300
           S NY +  +  GG   FN G RG G  P  NN   R   RGG N   GR       +  C
Sbjct: 81  SANYASSSNNRGGGRKFN-GGRGQGYAPNNNNYTYRGHGRGGRNGQGGRQNSNPSEKPQC 139

Query: 299 QIC 291
           Q+C
Sbjct: 140 QLC 142


>emb|CAN62182.1| hypothetical protein VITISV_044400 [Vitis vinifera]
          Length = 920

 Score = 60.8 bits (146), Expect(3) = 3e-19
 Identities = 33/92 (35%), Positives = 50/92 (54%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 107
           +  HTA  C++R D+++       + S NN + N         LA  +S  +S+ D  W+
Sbjct: 144 KFGHTAQICYHRFDISFQGGXTTTSPSLNNGNQNNI-------LAMVASFSNSSADESWY 196

Query: 106 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGN 11
            DSGA++H+T + GNL   S Y G D+V IGN
Sbjct: 197 LDSGASHHLTQNLGNLTSTSPYTGTDRVTIGN 228



 Score = 53.9 bits (128), Expect(3) = 3e-19
 Identities = 26/70 (37%), Positives = 41/70 (58%)
 Frame = -1

Query: 724 MPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRVEPYSLREV 545
           M M +++ KIK   D L   G+ + + + +  ++ GLG DYN V   IN R +  SL  +
Sbjct: 1   MSMIDYIMKIKGATDNLAAIGEPVLEQDWVMNLLGGLGSDYNVVVTAINIRDDKISLEAI 60

Query: 544 HALLLSFESR 515
           H++LL+FE R
Sbjct: 61  HSMLLAFEHR 70



 Score = 26.9 bits (58), Expect(3) = 3e-19
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
 Frame = -3

Query: 461 SVNYINQGSRTGG---FNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHG----RIA 303
           S NY +  +  GG   FN G  G G  P  NN    +   GG N G+GR ++     +  
Sbjct: 81  SANYASSSNNRGGGRKFN-GGCGQGYAPNNNNYTYXSHGXGGRN-GQGRRQNSSPSEKPQ 138

Query: 302 CQIC 291
           CQ+C
Sbjct: 139 CQLC 142


>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
           gi|31430072|gb|AAP52036.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1058

 Score = 70.9 bits (172), Expect(3) = 3e-19
 Identities = 33/82 (40%), Positives = 52/82 (63%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRV 569
           L   KKG+  + E++ K+K   D +  AG+ + D+E +SYI+ GL  DYNSV   +  R 
Sbjct: 96  LSNTKKGNRSVAEYVGKMKALADEMASAGKALDDEELVSYILAGLDFDYNSVVTTVTGRT 155

Query: 568 EPYSLREVHALLLSFESRWKVL 503
           +P S+ E++ LL+ FESR ++L
Sbjct: 156 DPISVNELYGLLVGFESRLELL 177



 Score = 41.6 bits (96), Expect(3) = 3e-19
 Identities = 25/94 (26%), Positives = 48/94 (51%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 107
           ++ HT  KC+ R D          ++++   SAN + +       ++S  +D+N    W+
Sbjct: 227 KVGHTVAKCWKRFD---------PSFTREEKSANTAAT-------SSSYGIDTN----WY 266

Query: 106 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNGT 5
            DS AT+H+T +   L++  +Y+G ++V    GT
Sbjct: 267 VDSNATDHITGEMEKLSVKDKYHGSEQVHNAGGT 300



 Score = 29.3 bits (64), Expect(3) = 3e-19
 Identities = 21/57 (36%), Positives = 26/57 (45%)
 Frame = -3

Query: 461 SVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHGRIACQIC 291
           S N +++G   GG  QG          NNRGG      G  RGRG  K  +  CQ+C
Sbjct: 184 SANAMSRGGCGGGHGQGGN--------NNRGG------GSGRGRGDGK-PKPTCQLC 225


>gb|AAX95626.1| Zinc knuckle, putative [Oryza sativa Japonica Group]
           gi|108709341|gb|ABF97136.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 535

 Score = 55.8 bits (133), Expect(3) = 4e-19
 Identities = 27/83 (32%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSV--KVIINS 575
           L T +KG + + E++ K+++  D +  AG+ + D+E I+YII GL  D+++    ++  +
Sbjct: 247 LTTTQKGPISISEYIAKMRSLGDEMAGAGKPLDDEELIAYIINGLNSDFDATVEGLMATA 306

Query: 574 RVEPYSLREVHALLLSFESRWKV 506
           R+ P S+  V++ LLS+E+R ++
Sbjct: 307 RIAPLSISHVYSQLLSYENRIRI 329



 Score = 50.1 bits (118), Expect(3) = 4e-19
 Identities = 27/61 (44%), Positives = 31/61 (50%)
 Frame = -3

Query: 467 TPSVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHGRIACQICH 288
           T S N  N+G R G    GNRG  S+     RGG     GG N GRGR    R  CQ+CH
Sbjct: 335 TTSANAANRGGRGG--RGGNRGGRSSAPHGGRGGGRGNTGGANPGRGRGNDTRPVCQVCH 392

Query: 287 R 285
           +
Sbjct: 393 K 393



 Score = 35.4 bits (80), Expect(3) = 4e-19
 Identities = 23/90 (25%), Positives = 35/90 (38%)
 Frame = -1

Query: 277 HTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDS 98
           H A+ C++R D  YG                     PD  L   ++      DT W+ D+
Sbjct: 396 HVASDCWHRYDENYG---------------------PDEKLGG-AATYAYGVDTNWYVDT 433

Query: 97  GATNHVTYDFGNLNLASEYNGGDKVQIGNG 8
            AT+H+T     L    +Y G D +   +G
Sbjct: 434 RATDHITGQLDKLTTREKYKGTDLIHTVSG 463


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1460

 Score = 60.5 bits (145), Expect(3) = 7e-19
 Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAG-QNISDDEHISYIITGLGRDYNSVKVIINSR 572
           L   KKG+M   E+  K+K+  D +  AG + I ++E I YIITGLG  Y+ V   + +R
Sbjct: 132 LTNTKKGNMSTPEYFAKMKSLGDEMATAGGRPIDEEELIQYIITGLGEGYSEVVSAVCAR 191

Query: 571 VEPYSLREVHALLLSFESR 515
           VEP S+ ++++ +L+FE+R
Sbjct: 192 VEPISVSDLYSQVLNFEAR 210



 Score = 46.2 bits (108), Expect(3) = 7e-19
 Identities = 28/90 (31%), Positives = 46/90 (51%)
 Frame = -1

Query: 277 HTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWFPDS 98
           HTA  C+YR D  Y             D+ +++ +      A NS  +D+N    W+ D+
Sbjct: 286 HTAADCWYRYDEDYVP-----------DAKHVAAA------AVNSYGVDTN----WYIDT 324

Query: 97  GATNHVTYDFGNLNLASEYNGGDKVQIGNG 8
           GAT+HVT +   L +  +YNGG+++   +G
Sbjct: 325 GATDHVTGELDKLTMKEKYNGGEQIHTASG 354



 Score = 33.9 bits (76), Expect(3) = 7e-19
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
 Frame = -3

Query: 449 INQGSRTGGFNQGNRGSGSNPFFNNR-----GGRASPRGGMNRGRGRFKHG---RIACQI 294
           +N  +R GGF+ G RG+ +     +R     GG     GG   GRGR   G   R  CQ+
Sbjct: 222 VNVANR-GGFSHGGRGNSNGGQGGSRGGGGGGGHGRGNGGGGHGRGRTPGGVDKRPICQV 280

Query: 293 CHR 285
           C +
Sbjct: 281 CFK 283


>gb|ABA95720.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 358

 Score = 56.2 bits (134), Expect(3) = 2e-18
 Identities = 27/60 (45%), Positives = 40/60 (66%)
 Frame = -1

Query: 682 DMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRVEPYSLREVHALLLSFESRWKVL 503
           D +  AG+ + D+E ++YI+ GL  DYNSV   + +R EP S+ E+HA L  FESR ++L
Sbjct: 110 DEMSSAGKPMDDEELVTYILAGLDFDYNSVVSSVANRAEPISVSELHAQLTGFESRMELL 169



 Score = 48.1 bits (113), Expect(3) = 2e-18
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLA--NNSSNMDSNQDTI 113
           ++ HT  KC+ R D +Y                    SG + ++A   NS  +D+N    
Sbjct: 228 KIGHTVVKCWKRFDTSY--------------------SGEEKSVAAATNSYGVDTN---- 263

Query: 112 WFPDSGATNHVTYDFGNLNLASEYNGGDKVQIGNGT 5
           W+ D+GAT+H+T +   L +  +Y GGD+V   +GT
Sbjct: 264 WYIDTGATDHITGELEKLTVRDKYTGGDQVHTASGT 299



 Score = 35.0 bits (79), Expect(3) = 2e-18
 Identities = 22/57 (38%), Positives = 26/57 (45%)
 Frame = -3

Query: 461 SVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHGRIACQIC 291
           S N  ++G R GG   G  G    P   NRG     RGG  RG G+ K     CQ+C
Sbjct: 176 SANSASRGGRGGG---GGGGGHGGPNSGNRGRGGFGRGGGGRGDGKLKP---ICQLC 226


>dbj|BAG98101.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 572

 Score = 54.7 bits (130), Expect(3) = 9e-18
 Identities = 26/78 (33%), Positives = 47/78 (60%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRV 569
           L   KKG++ + E++ K++   D +  AG+ + DD+ +S I+ GL  D++ V   +  R 
Sbjct: 90  LTATKKGNLKVAEYVAKMRGLADDMASAGKKLDDDDIVSDILAGLDDDFDPVVSAVAQRS 149

Query: 568 EPYSLREVHALLLSFESR 515
           EP S+ E+ + L++FE R
Sbjct: 150 EPISVGELFSQLVTFEQR 167



 Score = 48.1 bits (113), Expect(3) = 9e-18
 Identities = 28/94 (29%), Positives = 44/94 (46%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 107
           +L HT  KC+ R D ++       T  + + +A  S  G   N               W+
Sbjct: 232 KLGHTVVKCYKRFDASF-------TGEEKSAAAATSSYGVGTN---------------WY 269

Query: 106 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNGT 5
            D+GAT+H+T D   L +  +YNGGD+V   +G+
Sbjct: 270 IDTGATDHITSDLDKLTVREKYNGGDQVHTASGS 303



 Score = 33.9 bits (76), Expect(3) = 9e-18
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -3

Query: 473 GTTPSVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHGR----I 306
           G   S N  ++G   GG   G    G N    NRG     RGG  RGRG F + +     
Sbjct: 174 GIQSSTNSASRGGNGGGRGHGQPNQGQNL---NRG-----RGGQGRGRGGFTNNQGGDHP 225

Query: 305 ACQICHR 285
            CQ+C +
Sbjct: 226 KCQLCDK 232


>gb|EEE57553.1| hypothetical protein OsJ_07890 [Oryza sativa Japonica Group]
          Length = 499

 Score = 54.7 bits (130), Expect(3) = 9e-18
 Identities = 26/78 (33%), Positives = 47/78 (60%)
 Frame = -1

Query: 748 LQTIKKGDMPMREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRV 569
           L   KKG++ + E++ K++   D +  AG+ + DD+ +S I+ GL  D++ V   +  R 
Sbjct: 17  LTATKKGNLKVAEYVAKMRGLADDMASAGKKLDDDDIVSDILAGLDDDFDPVVSAVAQRS 76

Query: 568 EPYSLREVHALLLSFESR 515
           EP S+ E+ + L++FE R
Sbjct: 77  EPISVGELFSQLVTFEQR 94



 Score = 48.1 bits (113), Expect(3) = 9e-18
 Identities = 28/94 (29%), Positives = 44/94 (46%)
 Frame = -1

Query: 286 ELNHTANKCFYRGDLTYGATNNVNTYSQNNDSANLSQSGPDPNLANNSSNMDSNQDTIWF 107
           +L HT  KC+ R D ++       T  + + +A  S  G   N               W+
Sbjct: 159 KLGHTVVKCYKRFDASF-------TGEEKSAAAATSSYGVGTN---------------WY 196

Query: 106 PDSGATNHVTYDFGNLNLASEYNGGDKVQIGNGT 5
            D+GAT+H+T D   L +  +YNGGD+V   +G+
Sbjct: 197 IDTGATDHITSDLDKLTVREKYNGGDQVHTASGS 230



 Score = 33.9 bits (76), Expect(3) = 9e-18
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -3

Query: 473 GTTPSVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRFKHGR----I 306
           G   S N  ++G   GG   G    G N    NRG     RGG  RGRG F + +     
Sbjct: 101 GIQSSTNSASRGGNGGGRGHGQPNQGQNL---NRG-----RGGQGRGRGGFTNNQGGDHP 152

Query: 305 ACQICHR 285
            CQ+C +
Sbjct: 153 KCQLCDK 159


>emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera]
          Length = 763

 Score = 56.2 bits (134), Expect(3) = 1e-17
 Identities = 26/68 (38%), Positives = 43/68 (63%)
 Frame = -1

Query: 718 MREFLNKIKNYCDMLGVAGQNISDDEHISYIITGLGRDYNSVKVIINSRVEPYSLREVHA 539
           M E+L KI+ + D+L + G N+   +HI  I  G   +Y++  + INSR+E Y + E+ +
Sbjct: 1   MNEYLLKIRGFVDLLALVGVNLFVKDHIDVITDGFPSEYDTFFLTINSRIEDYLIEEIES 60

Query: 538 LLLSFESR 515
           LLL+ E+R
Sbjct: 61  LLLAQEAR 68



 Score = 52.8 bits (125), Expect(3) = 1e-17
 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
 Frame = -1

Query: 307 LLVKYAIELNHTANKCFYRGDLTYGATNNVN-TYSQNNDSANLSQSGPDPNLANNSSNMD 131
           ++ +  +++ H+ ++C+Y+ D ++     +  T S         Q G  PN+    + ++
Sbjct: 154 MVCQLCMKIGHSVDRCYYKYDPSFQGPRTLGFTPSFQRSPQTQVQGGNKPNMQVLMATLE 213

Query: 130 SNQDTIWFPDSGATNHVTYDFGNLNLASEYNGGDKVQ 20
           +  DT W+PDSGA+ HVT +  NL   + Y G ++V+
Sbjct: 214 NICDTNWYPDSGASXHVTANANNLVEHTXYYGNEQVR 250



 Score = 27.3 bits (59), Expect(3) = 1e-17
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = -3

Query: 500 VVQNNFGTEGTTPSVNYINQGSRTGGFNQGNRGSGSNPFFNNRGGRASPRGGMNRGRGRF 321
           + ++N   +  T SVN I QGS  G F +GN   G     NN+    SP    N GRG F
Sbjct: 69  IEKHNKNVDSETASVN-ITQGS--GNFGRGNFSQGRGFISNNQ---FSP----NFGRGNF 118